Table 3

Summary statistics of PARE libraries
Trimmed Genome matched cDNA matched cDNA locig
Tissue Code Totala Distinctb Totalc Distinctd Totale Distinctf
Root BDI20 10,748,481 2,342,429 9,279,374 1,605,048 4,298,418 1,021,275 22,762
Leaf BDI21 13,772,836 1,238,807 12,266,285 684,817 4,930,319 391,613 20,333
Stem BDI23 16,367,640 3,847,003 12,740,059 1,422,289 5,534,630 656,849 24,168
Panicle BDI25 29,050,139 4,820,607 26,566,704 3,419,993 15,078,495 2,203,450 20,538
Total 69,939,096 60,852,422 5,202,600 29,841,862 3,165,429 25,129

aThe total number of sequences obtained from a single run after trimming. bThe number of different sequences found in a set after trimming. cThe total number of sequences that match the genome at least once. dThe number of different sequences that match the genome at least once. eThe total number of sequences that match the sense strand of the coding sequence BdiCDSv1.2, the coding sequence minus UTR, at least once. fThe number of different sequences that match the sense strand of the coding sequence at least once. gThe total number of cDNA loci with at least one matching PARE sequence.

PARE, parallel analysis of RNA ends; UTR, untranslated region.

Jeong et al.

Jeong et al. Genome Biology 2013 14:R145   doi:10.1186/gb-2013-14-12-r145

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