Table 4

microRNA targets with PARE sequences at the expected site
Prediction programs Predicted targets Targets with precise PAREa
Sitesb Locic Sitesb Locic
CleaveLand 1,033 967 206 154
CleaveLandMd 794 746 170 127
psRNATarget 1,225 1,153 211 149
Totale 2,141 1,968 262 246

aPARE sequences that start at the precise cleavage site predicted. bDistinct cleavage sites. cThe total number of genes the cleavage sites correspond to. dCleaveLand with the modified scoring systems described in Materials and methods. eThe number of (non-redundant) sites or loci.

PARE, parallel analysis of RNA ends.

Jeong et al.

Jeong et al. Genome Biology 2013 14:R145   doi:10.1186/gb-2013-14-12-r145

Open Data