Table 2

Confirmed fusion events from two bladder cancer cell lines

Sample ID

Fusion genes (5'-3')

Chromosome (5'-3')

5' position

3' position

Fusion reads (span/junc)

Detected in both cell lines

Potential chromosomal rearrangement


5637

BDKRB2-BDKRB1

14-14

96703518

96728989

2/3

Yes

No

5637

CIRH1A-TMCO7

16-16

69184807

69117388

20/20

Yes

Yes

5637

CLN6-CALML4

15-15

68521840

68489966

4/4

Yes

No

5637

GATSL1-GTF2I

7-7

74867229

74143124

3/15

No

Yes

5637

HADHB-RBKS

2-2

26502983

28070964

12/10

Yes

Yes

5637

POLA2-CDC42EP2

11-11

65063461

65088015

3/5

No

No

5637

PSMD8-SIPA1L3

19-19

38871639

38673159

5/5

Yes

Yes

5637

TIAM1-ATP5O

21-21

32537279

35276325

9/21

Yes

Yes

T24

BDKRB2-BDKRB1

14-14

96703518

96728989

3/3

Yes

No

T24

CIRH1A-TMCO7

16-16

69184807

69117388

19/24

Yes

Yes

T24

CLN6-CALML4

15-15

68521840

68489966

6/5

Yes

No

T24

CTBS-GNG5

1-1

85028940

84967653

3/6

No

No

T24

HADHB-RBKS

2-2

26502983

28070964

6/7

Yes

Yes

T24

PSMD8-SIPA1L3

19-19

38871639

38673159

6/5

Yes

Yes

T24

TIAM1-ATP5O

21-21

32537279

35276325

8/28

Yes

Yes


All information is based on release 59 of the Ensembl hg19 annotation database. Six fusions were detected in both bladder cell lines, and five events may be derived from potential chromosomal rearrangements on the genome. For Fusion reads (span/junc), numbers of span-reads and junc-reads are separated by a slash.

Jia et al. Genome Biology 2013 14:R12   doi:10.1186/gb-2013-14-2-r12

Open Data