Table 2 |
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|
Confirmed fusion events from two bladder cancer cell lines |
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|
Sample ID |
Fusion genes (5'-3') |
Chromosome (5'-3') |
5' position |
3' position |
Fusion reads (span/junc) |
Detected in both cell lines |
Potential chromosomal rearrangement |
|
|
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|
5637 |
BDKRB2-BDKRB1 |
14-14 |
96703518 |
96728989 |
2/3 |
Yes |
No |
|
5637 |
CIRH1A-TMCO7 |
16-16 |
69184807 |
69117388 |
20/20 |
Yes |
Yes |
|
5637 |
CLN6-CALML4 |
15-15 |
68521840 |
68489966 |
4/4 |
Yes |
No |
|
5637 |
GATSL1-GTF2I |
7-7 |
74867229 |
74143124 |
3/15 |
No |
Yes |
|
5637 |
HADHB-RBKS |
2-2 |
26502983 |
28070964 |
12/10 |
Yes |
Yes |
|
5637 |
POLA2-CDC42EP2 |
11-11 |
65063461 |
65088015 |
3/5 |
No |
No |
|
5637 |
PSMD8-SIPA1L3 |
19-19 |
38871639 |
38673159 |
5/5 |
Yes |
Yes |
|
5637 |
TIAM1-ATP5O |
21-21 |
32537279 |
35276325 |
9/21 |
Yes |
Yes |
|
T24 |
BDKRB2-BDKRB1 |
14-14 |
96703518 |
96728989 |
3/3 |
Yes |
No |
|
T24 |
CIRH1A-TMCO7 |
16-16 |
69184807 |
69117388 |
19/24 |
Yes |
Yes |
|
T24 |
CLN6-CALML4 |
15-15 |
68521840 |
68489966 |
6/5 |
Yes |
No |
|
T24 |
CTBS-GNG5 |
1-1 |
85028940 |
84967653 |
3/6 |
No |
No |
|
T24 |
HADHB-RBKS |
2-2 |
26502983 |
28070964 |
6/7 |
Yes |
Yes |
|
T24 |
PSMD8-SIPA1L3 |
19-19 |
38871639 |
38673159 |
6/5 |
Yes |
Yes |
|
T24 |
TIAM1-ATP5O |
21-21 |
32537279 |
35276325 |
8/28 |
Yes |
Yes |
|
|
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|
All information is based on release 59 of the Ensembl hg19 annotation database. Six fusions were detected in both bladder cell lines, and five events may be derived from potential chromosomal rearrangements on the genome. For Fusion reads (span/junc), numbers of span-reads and junc-reads are separated by a slash. |
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|
Jia et al. Genome Biology 2013 14:R12 doi:10.1186/gb-2013-14-2-r12 |
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