Additional file 12.

Analysis of RNA secondary structure in starvation conditions. (A) Mean unpaired probability scores for Ts ranked and binned by CLSs. Control lines represent mean unpaired probability of randomly ranked and binned Ts with no CLS, repeated ten times. (B) Heatmaps of pairedness of 5' UTR and CDS crosslinking sites ranked by average crosslinking site CLS. (C) Percentage of Ts ranked and binned by CLSs in conserved secondary structural elements as defined by RNAz [43,44]. Control lines represent percentage of randomly ranked and binned Ts with no CLS in conserved secondary structural elements, repeated ten times.

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Freeberg et al. Genome Biology 2013 14:R13   doi:10.1186/gb-2013-14-2-r13