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Retrotransposition of gene transcripts leads to structural variation in mammalian genomes

Adam D Ewing1, Tracy J Ballinger1, Dent Earl1, Broad Institute Genome Sequencing and Analysis Program and Platform3, Christopher C Harris4, Li Ding4, Richard K Wilson4 and David Haussler12*

Author Affiliations

1 Center for Biomolecular Science and Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA

2 Howard Hughes Medical Institute, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA

3 Broad Institute of MIT and Harvard, 5 Cambridge Center, Cambridge, MA 02142, USA

4 The Genome Institute, Washington University, 4444 Forest Park Avenue, St. Louis, MO 63108, USA

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Genome Biology 2013, 14:R22  doi:10.1186/gb-2013-14-3-r22

Published: 13 March 2013

Additional files

Additional file 1:

See Supplemental Data (Additional file 3) for individual table and column descriptions.

Format: XLS Size: 462KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

Contains splice junctions detected in inserted sequences. The FASTA-formatted file can be opened with any text editor.

Format: PDF Size: 923KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 3:

Contains descriptions of supplemental tables (Additional file 1), supplemental figures, and sequences.

Format: FA Size: 21KB Download file

Open Data

Additional file 4:

Archival version of GRIPper. We recommend downloading the latest version from github [78].

Format: GZ Size: 23KB Download file

Open Data