Table 1

List of all features considered.

Features

Description


Nucleotide level

Microdeletion/microinsertion positions (2)

Distances to nearest 5' and 3' splicing positions

DNA conservation scores (3)

Maximum, minimum, average

Protein level

Evolution feature (30)

Maximum, minimum, average values (7 transition probabilities between match (M), microdeletion (D), and microinsertion (I) (MM, MI, MD, IM, II, DM, DD), 3 effective numbers of match/microinsertion/microdeletion)

Length (4)

Protein length, Microdeletion/microinsertion length, Distances to terminals

ΔS (1)

The indel-induced change to the HMM match score

Disorder score (3)

Maximum, minimum, average

Secondary structure (12)

Maximum, minimum, average probability (C, H, E), Predicted secondary structure (C, H, E)

Accessible surface area (3)

Maximum, minimum, average


Zhao et al. Genome Biology 2013 14:R23   doi:10.1186/gb-2013-14-3-r23

Open Data