Table 1

Detection of allele-specific copy numbers in cell line HCC1187 using Patchwork, with (Affymetrix SNP 6

Total copies, n

Minor alleles, n

True positives, n

True negatives, n

False positives, n

False negatives, n

Sensitivity, %

Specificity, %


1

0

16

679

0

0

100.0

100.0

2

0

480

208

0

7

98.6

100.0

1

7

688

0

0

100.0

100.0

3

0

39

649

6

1

97.5

99.1

1

46

646

2

1

97.9

99.7

4

1

10

684

1

0

100.0

99.9

2

69

618

3

5

93.2

99.5


aNumber of segments, sensitivity and specificity are shown.

Mayrhofer et al. Genome Biology 2013 14:R24   doi:10.1186/gb-2013-14-3-r24

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