The number of spliced-read alignments from TopHat2, GSNAP, RUM, MapSplice, and STAR. The RNA-seq reads are from Chen et al. . TopHat2, GSNAP, and STAR were run in both de novo and gene-mapping modes while MapSplice was run only in de novo mode and RUM was run only in gene-mapping mode. For each mapping mode, the two panels on the left show the number of spliced alignments whose splice sites were found in the gene annotations, and the two panels on the right show the number of all spliced alignments including novel splice sites.
Kim et al. Genome Biology 2013 14:R36 doi:10.1186/gb-2013-14-4-r36