Table 2

Annotation summary of the top 200 clusters inferred from PAR-CLIP experiments with snoRNA core proteins.

PAR-CLIP library

C/D box snoRNAs

H/ACA box snoRNAs

scaRNAs

mRNA exons

Other


FBL

123 (61.5%)

9 (4.5%)

10 (5.0%)

5 (2.5%)

53 (26.5%)

FBL (MNase)

106 (53.0%)

16 (8.0%)

10 (5.0%)

26 (13.0%)

42 (21.0%)

NOP56

115 (57.5%)

28 (14.0%)

15 (7.5%)

2 (1.0%)

40 (20.0%)

NOP58 rep A

114 (57.0%)

14 (7.0%)

10 (5.0%)

9 (4.5%)

52 (26.0%)

NOP58 rep B

125 (62.5%)

4 (2.0%)

10 (5.0%)

9 (4.5%)

52 (26.0%)

DKC1

11 (5.5%)

62 (32.0%)

18 (9.0%)

7 (3.5%)

102 (51.0%)

Ago2 rep A

0 (0.0%)

0 (0.0%)

1 (0.5%)

59 (29.5%)

140 (70.0%)

HuR rep A

0 (0.0%)

0 (0.0%)

0 (0.0%)

117 (58.5%)

83 (41.5%)


Ago2: Argonaute 2; DKC1: Dyskerin; FBL: Fibrillarin; MNase: micrococcal nuclease; PAR-CLIP: photoactivatable-ribonucleoside-enhanced cross-linking and immunoprecipitation; scaRNA: small Cajal body-specific RNA; snoRNA: small nucleolar RNA;

Kishore et al. Genome Biology 2013 14:R45   doi:10.1186/gb-2013-14-5-r45

Open Data