Table 1 |
|||||
|
Genome resources in forest trees |
|||||
|
Family |
Genus |
Species |
Sequence access |
Genome |
Related publications |
|
|
|||||
|
Pinaceae |
Pinus |
taeda (loblolly pine) |
Resequenced amplicons |
||
|
[20] |
BACs |
||||
|
Fosmids |
|||||
|
|
[23] |
Draft genome complete |
|||
|
|
|||||
|
Pinus |
lambertiana (sugar pine) |
Resequenced amplicons |
[24] |
||
|
|
[23] |
Draft genome (in progress) |
|||
|
|
|||||
|
Pseudotsuga |
menziesii (Douglas-fir) |
Resequenced amplicons |
[25] |
||
|
|
[23] |
Draft genome (in progress) |
|||
|
|
|||||
|
Pinus |
sylvestris (Scots pine) |
[26] |
Draft genome (in progress) |
||
|
|
|||||
|
Pinus |
pinsater (maritime pine) |
[26] |
Draft genome (in progress) |
||
|
|
Resequenced amplicons |
[27] |
|||
|
|
|||||
|
Pinus |
sibirica (Siberian pine) |
[28] |
Draft genome (in progress) |
||
|
|
|||||
|
Pinus |
radiata (Monterey pine) |
Draft genome (in progress) |
|||
|
|
Resequenced amplicons |
[29] |
|||
|
|
|||||
|
Picea |
abies (Norway spruce) |
Resequenced amplicons |
[30] |
||
|
|
[31] |
Draft genome complete (restricted) |
|||
|
|
|||||
|
Picea |
glauca (white spruce) |
[32] |
Draft genome complete |
||
|
BACs |
[33] |
||||
|
|
|||||
|
Larix |
sibirica (Siberian larch) |
[28] |
Draft genome (in progress) |
||
|
|
|||||
|
Salicaceae |
Populus |
trichocarpa (black cottonwood) |
[34] |
Genome complete |
[6] |
|
[19] |
BACs |
[35] |
|||
|
Genome resequencing (restricted) |
[36] |
||||
|
Populus |
tremula (European aspen) |
[37] |
Draft genome complete |
||
|
|
|||||
|
Populus |
tremula x tremuloides |
[37] |
Draft genome complete |
||
|
|
|||||
|
Populus |
tremuloides (quaking aspen) |
[37] |
Draft genome complete |
||
|
|
[19] |
BACs |
[38] |
||
|
|
|||||
|
Populus |
grandidentata (bigtooth aspen) |
[37] |
Draft genome complete |
||
|
|
|||||
|
Populus |
nigra (black poplar) |
[39] |
Draft genome complete (restricted) |
||
|
|
|||||
|
Salix |
purpurea (purpleosier willow) |
[40] |
Draft genome complete (restricted) |
||
|
|
|||||
|
Myrtaceae |
Eucalytpus |
grandis (rose gum) |
[19] |
BACs |
[41] |
|
|
[34] |
Draft genome complete |
|||
|
Eucalyptus |
globulus (blue gum) |
[42] |
Draft genome (in progress) |
||
|
|
|||||
|
Eucalyptus |
camaldulensis (river red gum) |
[43] |
Draft genome complete |
[44] |
|
|
|
|||||
|
Corymbia |
citriodora (lemon-scented gum) |
[45] |
Draft genome complete (restricted) |
||
|
|
|||||
|
Fagaceae |
Quercus |
robur (English oak) |
[19] |
BACs |
|
|
[48] |
Draft genome (in progress) |
||||
|
|
|||||
|
Castanea |
mollissima (Chinese chestnut) |
[49] |
Draft genome (in progress) |
||
|
[50] |
BACs |
[51] |
|||
|
|
|||||
|
Betulaceae |
Betula |
nana (dwarf birch) |
[52] |
Draft genome complete |
[53] |
|
|
|||||
|
Oleaceae |
Fraxinus |
excelsior (European ash) |
[54] |
Draft genome complete |
|
|
|
|||||
|
Details current genome sequencing projects in forest trees with sequence access information and relevant publications. |
|||||
|
Neale et al. Genome Biology 2013 14:120 doi:10.1186/gb-2013-14-6-120 |
|||||