Table 3 |
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|
Summary of the microarray data available for sugarcane and Sorghum |
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|
Platform |
Record GEO/NCBI |
Features |
No. of samples |
Sample description |
Variety |
Reference |
|
|
||||||
|
Sugarcane ESTs nylon arrays I |
GPL210 |
1,536 |
12 |
Plantlet samples exposed to cold for up to 48 h |
Saccharum hybrid cv.SP80-3280 |
[112] |
|
SUCAST Sugarcane 2208 v1.0 (cDNA microarray) |
GPL3799 |
2,208 |
16 |
Roots from six plants harvested 6, 12, 24 and 48 h after exposure to phosphate starvation |
Saccharum hybrid cv.SP80-3280 |
[113] |
|
8 |
Response to herbivory by Diatraea saccharalis |
|||||
|
28 |
Hormone treatment |
|||||
|
8 |
Response to N2-fixing endophytic bacteria association |
Saccharum hybrid cv.SP70-1143 |
||||
|
12 |
Leaves collected 24, 72 and 120 h after exposure to drought conditions for the control and experimental groups |
Saccharum hybrid cv.SP90-1638 |
||||
|
SUCAST 1920v3 (cDNA microarray) |
GPL1376 |
1,920 |
26 |
The abundance of transcripts among six different sugarcane tissues (flowers, roots, leaves, lateral buds, 1st and 4th internodes) |
Saccharum hybrid cv.SP80-3280 |
[114] |
|
4 |
Leaves from sugarcane population segregated in relation to high and low brix |
|||||
|
Affymetrix Sugarcane Genome Array |
GPL3844 |
6,024 |
12 |
Leaves of sugarcane in response to sugar accumulation in meristem, internodes 1 to 3, internode 8, internode 20 |
Saccharum hybrid cv.Q117 |
[115] |
|
8 |
Cold-girdles were attached to sugarcane leaves (n = 4) for a period of 56 h prior to harvest |
Saccharum hybrid cv.N19 |
[116] |
|||
|
SUCEST-FUN Agilent 44k (oligo array) |
GPL14862 |
21,902 |
6 |
Leaves were collected 24, 72 and 120 h after exposure to drought conditions for the control and experimental groups |
Saccharum hybrid cv.SP90-1638 |
[86] |
|
cDNA microarray |
12,982 |
118 |
Seedlings exposed to high salinity, osmotic stress, and ABA for 3 and 27 h |
Seedlings of Sorghum bicolor L. Moench cv BTx623 |
[117] |
|
|
12,982 |
>102 |
Seedlings exposed to salicylic acid, methyl jasmonate, and the ethylene precursor aminocyclopropane for 3 and 27 h |
Seedlings of S. bicolor L. Moench cv BTx623 |
[118] |
||
|
cDNA glass slide |
Not available |
672 |
>6 |
Herbivory with Schizaphis graminum |
Seedlings of S. bicolor ATx399 _ RTx430 |
[119] |
|
3,508 |
>4 |
Herbivory with Schizaphis graminum |
Seedlings of S. bicolor M627 and Tx7000 |
[120] |
||
|
Sorghum Agilent 44k (oligo array) |
GPL15369 |
41,977 |
12 |
Leaves were collected 24, 72 and 120 h after exposure to drought conditions for the control and experimental groups |
Grain of S. bicolor L. sweet Keller cv BTx623 |
[74] |
|
|
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|
ABA, abscisic acid; GEO, Gene Expression Omnibus; NCBI, National Center for Biotechnology Information. |
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|
de Siqueira Ferreira et al. Genome Biology 2013 14:210 doi:10.1186/gb-2013-14-6-210 |
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