Table 2

Analysis of Morex and Barke sequence alignments in regions showing CNV

Sequence present in Barke (%)

Fragments with NoCNV (n, %)

DownCNV/PAVs (n, %)

UpCNVs (n, %)

0

156 (6)

114 (34)

7 (11)

0-24

31 (1)

16 (5)

0 (0)

25-49

42 (2)

18 (5)

3 (5)

50-74

59 (2)

25 (7)

2 (3)

75-99

280 (10)

84 (25)

8 (13)

100

2,130 (79)

80 (24)

49(79)

Total number of contig fragments analyzed

2,698 (100)

337 (100)

69 (100)

For all contig fragments showing UpCNV and DownCNV/PAV, we calculated the percentage of the sequence that was present in Barke. Contig fragments not affected by CNV (NoCNV) were also analyzed.

Muñoz-Amatriaín et al. Genome Biology 2013 14:R58   doi:10.1186/gb-2013-14-6-r58