Table 3

Direction and length of priming-induced stable differences in H3K27me3

Gene ID

Description (from TAIR)

P/Ca

24 hb

Lengthc 24 h/bp

Length 10 d/bp

P/Ca

10 dd


AT1G05291

Unknown protein

Down

200

200

Down

AT1G09380

Integral membrane family/MtN21-related

Down

200

200

Down

AT1G12190

F-box family protein

Down

800

400

Down

AT1G12260

ANAC007; transcription factor

Down

600

400

Down

AT1G18710

AtMYB47 transcription factor

Down

600

200

Down

AT1G19800

TGD1; lipid transporter

Down

200

200

Down

AT1G30795

Hydroxyproline-rich glycoprotein family protein

Down

200

200

Down

AT1G31875

Unknown protein

Down

600

200

Down

AT1G47370

Toll-Interleukin-Resistance (TIR) domain

Down

600

200

Down

AT1G47786

Acyl-protein thioesterase-related

Down

400

200

Down

AT1G51460

ABC transporter family protein

Down

600

200

Down

AT1G51490

BGLU36 (beta glucosidase 36); hydrolase

Down

200

400

Down

AT1G52070

Jacalin lectin family protein

Down

200

200

Down

AT1G52140

Unknown protein

Down

1,800

200

Down

AT1G52410

TSA1; calcium ion binding/protein binding

Down

800

200

Down

AT1G56650

PAP1; transcription factor

Down

600

200

Down

AT1G57830

Toll-Interleukin-Resistance (TIR) domain

Down

400

400

Down

AT1G59722

Unknown protein

Down

1,000

200

Down

AT1G61630

ENT7 equilibrative nucleoside transporter

Down

800

600

Down

AT1G61750

Molecular_function unknown

Down

200

200

Down

AT1G62030

DC1 domain-containing protein

Up

200

400

Up

AT1G65342

Unknown protein

Down

200

200

Down

AT1G67710

ARR11; transcription factor/ two-component

Down

400

200

Down

AT1G69090

F-box family protein

Down

800

200

Down

AT1G69120

AP1 (Apetala 1); DNA binding

Down

800

200

Down

AT1G75920

Family II extracellular lipase 5 (EXL5)

Down

400

200

Down

AT2G14710

F-box family protein

Down

200

200

Down

AT2G14960

GH3.1

Up

400

200

Up

AT2G16220

F-box family protein

Down

600

200

Down

AT2G21890

CAD3 cinnamyl alcohol dehydrogenase

Down

400

400

Down

AT2G22180

Hydroxyproline-rich glycoprotein family protein

Down

400

200

Down

AT2G23170

GH3.3; indole-3-acetic acid amido synthetase

Up

400

200

Up

AT2G23171

Unknown protein

Down

200

200

Down

AT2G24205

ECA1 gametogenesis related family protein

Down

200

200

Down

AT2G25697

Unknown protein

Down

600

200

Down

AT2G25700

ASK3 (SKP1-like 3); ubiquitin-protein ligase

Down

600

200

Down

AT2G26580

YAB5 (YABBY5); transcription factor

Down

600

1,000

Down

AT2G30300

Nodulin-related

Down

200

200

Down

AT2G30760

Unknown protein

Down

200

200

Down

AT2G31083

CLE5 (Clavata3/ESR-related 5)

Down

1,200

200

Down

AT2G32870

Meprin and TRAF homology domain protein

Down

200

200

Down

AT2G34790

MEE23; FAD binding

Down

800

200

Down

AT2G39010

PIP2E; water channel

Down

600

400

Down

AT3G03200

Anac045; transcription factor

Down

400

200

Down

AT3G09390

MT2A; copper ion binding

Down

400

400

Down

AT3G16360

AHP4; histidine phosphotransfer kinase

Down

200

200

Down

AT3G18010

WOX1 (Wuschel related); transcription factor

Down

600

200

Down

AT3G18550

BRC1 (Branched 1); transcription factor

Down

1,800

200

Down

AT3G20160

Geranylgeranyl pyrophosphate synthase, putative

Up

600

200

Up

AT3G21840

ASK7 (SKP1-LIKE 7); ubiquitin-protein ligase

Down

400

400

Down

AT3G21850

ASK9 (SKP1-LIKE 9); ubiquitin-protein ligase

Down

400

200

Down

AT3G22080

Meprin and TRAF homology domain protein

Down

200

200

Down


AT3G25710

BHLH32; transcription factor

Down

600

200

Down

AT3G29260

Short-chain dehydrogenase/reductase family

Down

800

200

Down

AT3G29970

Germination protein-related

Down

800

400

Down

AT3G44780

Unknown protein

Down

1,000

200

Down

AT3G45560

Zinc finger (C3HC4-type RING finger) family

Down

600

200

Down

AT3G50480

HR4 (homolog of RPW8 4)

Down

600

200

Down

AT3G51200

Auxin-responsive family protein

Down

400

200

Down

AT3G55700

UDP-glucoronosyl/UDP-glucosyl transferase

Down

200

400

Down

AT4G00300

Fringe-related protein

Up

400

200

Up

AT4G01420

CBL5 (Calcineurin B-like protein 5)

Down

400

200

Down

AT4G01520

Anac067; transcription factor

Down

200

200

Down

AT4G04840

Methionine sulfoxide reductase domain protein

Down

1,000

200

Down

AT4G04890

PDF2; transcription factor

Down

800

200

Down

AT4G10220

Unknown protein

Down

1,000

200

Down

AT4G10350

ANAC070; transcription factor

Down

400

200

Down

AT4G11170

Disease resistance protein (TIR-NBS-LRR class)

Down

1,200

200

Down

AT4G12510

Lipid transfer protein (LTP) family protein

Down

600

400

Down

AT4G12520

Lipid transfer protein (LTP) family protein

Down

400

200

Down

AT4G13420

HAK5 (high affinity K+ transporter 5)

Up

400

200

Up

AT4G19730

Glycosyl hydrolase family 18 protein

Down

600

400

Down

AT4G19740

Catalytic/ cation binding/chitinase/ hydrolase

Down

1,600

200

Down

AT4G22030

F-box family protein

Down

200

200

Down

AT4G22070

WRKY31; transcription factor

Down

200

200

Down

AT4G28840

Unknown protein

Down

800

200

Down

AT4G29033

Encodes a defensin-like (DEFL) family protein.

Down

800

200

Down

AT4G30590

Plastocyanin-like domain-containing protein

Down

200

200

Down

AT5G04386

Unknown protein

Down

200

200

Down

AT5G11520

ASP3 (aspartate aminotransferase 3)

Down

400

400

Down

AT5G15160

bHLH family protein

Down

600

200

Down

AT5G15210

ATHB30; transcription factor

Up

200

400

Up

AT5G15800

SEP1 (Sepallata 1); transcription factor

Down

600

200

Down

AT5G17100

Molecular_function unknown

Down

400

400

Down

AT5G17810

WOX12 (Wuschel related); transcription factor

Down

1,600

600

Down

AT5G17960

DC1 domain-containing protein

Up

1,000

200

Down

AT5G24070

Peroxidase family protein

Down

200

200

Down

AT5G24820

Aspartyl protease family protein

Up

200

400

Up

AT5G24910

CYP714A1; electron carrier/ heme binding

Down

200

400

Down

AT5G25390

SHN2 (shine2); transcription factor

Down

1,000

200

Down

AT5G25990

Unknown protein

Down

200

200

Down

AT5G35770

SAP (sterile apetala); transcription factor

Down

1,000

400

Down

AT5G39560

Molecular_function unknown

Up

600

200

Up

AT5G40040

60S acidic ribosomal protein P2 (RPP2E)

Up

400

200

Up

AT5G40790

Unknown protein

Down

800

200

Down

AT5G42590

CYP71A16; electron carrier/ heme binding

Down

600

200

Down

AT5G43120

Tetratricopeptide repeat (TPR)-containing protein

Up

400

400

Up

AT5G45200

Disease resistance protein (TIR-NBS-LRR class)

Down

1,000

200

Down

AT5G46350

WRKY8; transcription factor

Down

400

400

Down

AT5G57785

Unknown protein

Down

800

400

Down

AT5G60010

FAD binding/calcium ion binding

Down

800

200

Down

AT5G60970

TCP5; transcription factor

Down

600

200

Down


aP/C: Direction of H3K27me3 change in primed versus non-primed plants.

b24 h: Immediately after the priming treatment.

cFor exact genome coordinates see Additional File 1, Table S1.

d10 d: After 10 days of growth in control conditions.

Sani et al. Genome Biology 2013 14:R59   doi:10.1186/gb-2013-14-6-r59

Open Data