Table 3 |
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|
Direction and length of priming-induced stable differences in H3K27me3 |
|||||
|
Gene ID |
Description (from TAIR) |
P/Ca 24 hb |
Lengthc 24 h/bp |
Length 10 d/bp |
P/Ca 10 dd |
|
|
|||||
|
AT1G05291 |
Unknown protein |
Down |
200 |
200 |
Down |
|
AT1G09380 |
Integral membrane family/MtN21-related |
Down |
200 |
200 |
Down |
|
AT1G12190 |
F-box family protein |
Down |
800 |
400 |
Down |
|
AT1G12260 |
ANAC007; transcription factor |
Down |
600 |
400 |
Down |
|
AT1G18710 |
AtMYB47 transcription factor |
Down |
600 |
200 |
Down |
|
AT1G19800 |
TGD1; lipid transporter |
Down |
200 |
200 |
Down |
|
AT1G30795 |
Hydroxyproline-rich glycoprotein family protein |
Down |
200 |
200 |
Down |
|
AT1G31875 |
Unknown protein |
Down |
600 |
200 |
Down |
|
AT1G47370 |
Toll-Interleukin-Resistance (TIR) domain |
Down |
600 |
200 |
Down |
|
AT1G47786 |
Acyl-protein thioesterase-related |
Down |
400 |
200 |
Down |
|
AT1G51460 |
ABC transporter family protein |
Down |
600 |
200 |
Down |
|
AT1G51490 |
BGLU36 (beta glucosidase 36); hydrolase |
Down |
200 |
400 |
Down |
|
AT1G52070 |
Jacalin lectin family protein |
Down |
200 |
200 |
Down |
|
AT1G52140 |
Unknown protein |
Down |
1,800 |
200 |
Down |
|
AT1G52410 |
TSA1; calcium ion binding/protein binding |
Down |
800 |
200 |
Down |
|
AT1G56650 |
PAP1; transcription factor |
Down |
600 |
200 |
Down |
|
AT1G57830 |
Toll-Interleukin-Resistance (TIR) domain |
Down |
400 |
400 |
Down |
|
AT1G59722 |
Unknown protein |
Down |
1,000 |
200 |
Down |
|
AT1G61630 |
ENT7 equilibrative nucleoside transporter |
Down |
800 |
600 |
Down |
|
AT1G61750 |
Molecular_function unknown |
Down |
200 |
200 |
Down |
|
AT1G62030 |
DC1 domain-containing protein |
Up |
200 |
400 |
Up |
|
AT1G65342 |
Unknown protein |
Down |
200 |
200 |
Down |
|
AT1G67710 |
ARR11; transcription factor/ two-component |
Down |
400 |
200 |
Down |
|
AT1G69090 |
F-box family protein |
Down |
800 |
200 |
Down |
|
AT1G69120 |
AP1 (Apetala 1); DNA binding |
Down |
800 |
200 |
Down |
|
AT1G75920 |
Family II extracellular lipase 5 (EXL5) |
Down |
400 |
200 |
Down |
|
AT2G14710 |
F-box family protein |
Down |
200 |
200 |
Down |
|
AT2G14960 |
GH3.1 |
Up |
400 |
200 |
Up |
|
AT2G16220 |
F-box family protein |
Down |
600 |
200 |
Down |
|
AT2G21890 |
CAD3 cinnamyl alcohol dehydrogenase |
Down |
400 |
400 |
Down |
|
AT2G22180 |
Hydroxyproline-rich glycoprotein family protein |
Down |
400 |
200 |
Down |
|
AT2G23170 |
GH3.3; indole-3-acetic acid amido synthetase |
Up |
400 |
200 |
Up |
|
AT2G23171 |
Unknown protein |
Down |
200 |
200 |
Down |
|
AT2G24205 |
ECA1 gametogenesis related family protein |
Down |
200 |
200 |
Down |
|
AT2G25697 |
Unknown protein |
Down |
600 |
200 |
Down |
|
AT2G25700 |
ASK3 (SKP1-like 3); ubiquitin-protein ligase |
Down |
600 |
200 |
Down |
|
AT2G26580 |
YAB5 (YABBY5); transcription factor |
Down |
600 |
1,000 |
Down |
|
AT2G30300 |
Nodulin-related |
Down |
200 |
200 |
Down |
|
AT2G30760 |
Unknown protein |
Down |
200 |
200 |
Down |
|
AT2G31083 |
CLE5 (Clavata3/ESR-related 5) |
Down |
1,200 |
200 |
Down |
|
AT2G32870 |
Meprin and TRAF homology domain protein |
Down |
200 |
200 |
Down |
|
AT2G34790 |
MEE23; FAD binding |
Down |
800 |
200 |
Down |
|
AT2G39010 |
PIP2E; water channel |
Down |
600 |
400 |
Down |
|
AT3G03200 |
Anac045; transcription factor |
Down |
400 |
200 |
Down |
|
AT3G09390 |
MT2A; copper ion binding |
Down |
400 |
400 |
Down |
|
AT3G16360 |
AHP4; histidine phosphotransfer kinase |
Down |
200 |
200 |
Down |
|
AT3G18010 |
WOX1 (Wuschel related); transcription factor |
Down |
600 |
200 |
Down |
|
AT3G18550 |
BRC1 (Branched 1); transcription factor |
Down |
1,800 |
200 |
Down |
|
AT3G20160 |
Geranylgeranyl pyrophosphate synthase, putative |
Up |
600 |
200 |
Up |
|
AT3G21840 |
ASK7 (SKP1-LIKE 7); ubiquitin-protein ligase |
Down |
400 |
400 |
Down |
|
AT3G21850 |
ASK9 (SKP1-LIKE 9); ubiquitin-protein ligase |
Down |
400 |
200 |
Down |
|
AT3G22080 |
Meprin and TRAF homology domain protein |
Down |
200 |
200 |
Down |
|
|
|||||
|
AT3G25710 |
BHLH32; transcription factor |
Down |
600 |
200 |
Down |
|
AT3G29260 |
Short-chain dehydrogenase/reductase family |
Down |
800 |
200 |
Down |
|
AT3G29970 |
Germination protein-related |
Down |
800 |
400 |
Down |
|
AT3G44780 |
Unknown protein |
Down |
1,000 |
200 |
Down |
|
AT3G45560 |
Zinc finger (C3HC4-type RING finger) family |
Down |
600 |
200 |
Down |
|
AT3G50480 |
HR4 (homolog of RPW8 4) |
Down |
600 |
200 |
Down |
|
AT3G51200 |
Auxin-responsive family protein |
Down |
400 |
200 |
Down |
|
AT3G55700 |
UDP-glucoronosyl/UDP-glucosyl transferase |
Down |
200 |
400 |
Down |
|
AT4G00300 |
Fringe-related protein |
Up |
400 |
200 |
Up |
|
AT4G01420 |
CBL5 (Calcineurin B-like protein 5) |
Down |
400 |
200 |
Down |
|
AT4G01520 |
Anac067; transcription factor |
Down |
200 |
200 |
Down |
|
AT4G04840 |
Methionine sulfoxide reductase domain protein |
Down |
1,000 |
200 |
Down |
|
AT4G04890 |
PDF2; transcription factor |
Down |
800 |
200 |
Down |
|
AT4G10220 |
Unknown protein |
Down |
1,000 |
200 |
Down |
|
AT4G10350 |
ANAC070; transcription factor |
Down |
400 |
200 |
Down |
|
AT4G11170 |
Disease resistance protein (TIR-NBS-LRR class) |
Down |
1,200 |
200 |
Down |
|
AT4G12510 |
Lipid transfer protein (LTP) family protein |
Down |
600 |
400 |
Down |
|
AT4G12520 |
Lipid transfer protein (LTP) family protein |
Down |
400 |
200 |
Down |
|
AT4G13420 |
HAK5 (high affinity K+ transporter 5) |
Up |
400 |
200 |
Up |
|
AT4G19730 |
Glycosyl hydrolase family 18 protein |
Down |
600 |
400 |
Down |
|
AT4G19740 |
Catalytic/ cation binding/chitinase/ hydrolase |
Down |
1,600 |
200 |
Down |
|
AT4G22030 |
F-box family protein |
Down |
200 |
200 |
Down |
|
AT4G22070 |
WRKY31; transcription factor |
Down |
200 |
200 |
Down |
|
AT4G28840 |
Unknown protein |
Down |
800 |
200 |
Down |
|
AT4G29033 |
Encodes a defensin-like (DEFL) family protein. |
Down |
800 |
200 |
Down |
|
AT4G30590 |
Plastocyanin-like domain-containing protein |
Down |
200 |
200 |
Down |
|
AT5G04386 |
Unknown protein |
Down |
200 |
200 |
Down |
|
AT5G11520 |
ASP3 (aspartate aminotransferase 3) |
Down |
400 |
400 |
Down |
|
AT5G15160 |
bHLH family protein |
Down |
600 |
200 |
Down |
|
AT5G15210 |
ATHB30; transcription factor |
Up |
200 |
400 |
Up |
|
AT5G15800 |
SEP1 (Sepallata 1); transcription factor |
Down |
600 |
200 |
Down |
|
AT5G17100 |
Molecular_function unknown |
Down |
400 |
400 |
Down |
|
AT5G17810 |
WOX12 (Wuschel related); transcription factor |
Down |
1,600 |
600 |
Down |
|
AT5G17960 |
DC1 domain-containing protein |
Up |
1,000 |
200 |
Down |
|
AT5G24070 |
Peroxidase family protein |
Down |
200 |
200 |
Down |
|
AT5G24820 |
Aspartyl protease family protein |
Up |
200 |
400 |
Up |
|
AT5G24910 |
CYP714A1; electron carrier/ heme binding |
Down |
200 |
400 |
Down |
|
AT5G25390 |
SHN2 (shine2); transcription factor |
Down |
1,000 |
200 |
Down |
|
AT5G25990 |
Unknown protein |
Down |
200 |
200 |
Down |
|
AT5G35770 |
SAP (sterile apetala); transcription factor |
Down |
1,000 |
400 |
Down |
|
AT5G39560 |
Molecular_function unknown |
Up |
600 |
200 |
Up |
|
AT5G40040 |
60S acidic ribosomal protein P2 (RPP2E) |
Up |
400 |
200 |
Up |
|
AT5G40790 |
Unknown protein |
Down |
800 |
200 |
Down |
|
AT5G42590 |
CYP71A16; electron carrier/ heme binding |
Down |
600 |
200 |
Down |
|
AT5G43120 |
Tetratricopeptide repeat (TPR)-containing protein |
Up |
400 |
400 |
Up |
|
AT5G45200 |
Disease resistance protein (TIR-NBS-LRR class) |
Down |
1,000 |
200 |
Down |
|
AT5G46350 |
WRKY8; transcription factor |
Down |
400 |
400 |
Down |
|
AT5G57785 |
Unknown protein |
Down |
800 |
400 |
Down |
|
AT5G60010 |
FAD binding/calcium ion binding |
Down |
800 |
200 |
Down |
|
AT5G60970 |
TCP5; transcription factor |
Down |
600 |
200 |
Down |
|
|
|||||
|
aP/C: Direction of H3K27me3 change in primed versus non-primed plants. b24 h: Immediately after the priming treatment. cFor exact genome coordinates see Additional File 1, Table S1. d10 d: After 10 days of growth in control conditions. |
|||||
|
Sani et al. Genome Biology 2013 14:R59 doi:10.1186/gb-2013-14-6-r59 |
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