Table 4

Functional annotation of the predicted proteome from the N.

N. sylvestris merged

N. tomentosiformis merged


Unique IDs

38,940

38,648

EC numbers

    Any EC assignment

12,220

11,951

    3×EC assignments

7,793

7,611

    ... to unique proteins

7,554

7,397

    3×EC assignments HC

4,117

4,069

    ...to unique proteins

4,061

4,008

    Unique 3×EC numbers

148

150

    4×EC assignments

4,427

4,340

    ...to unique proteins

4,203

4,120

    4×EC assignments HC

3,096

3,120

    ...to unique proteins

2,989

3,007

    Unique 4×EC

635

635

GO terms

    Unique protein IDs

22,497

22,196

    Unique protein IDs with a molecular function

19,852

19,551

    Biological process

48,896

48,365

    Molecular function

24,680

24,136

    Cellular component

8,414

8,419


sylvestris and N. tomentosiformis assemblies

EFICAz2.5 was used to assign Enzyme Commission (EC) numbers and InterProScan was used to assign GO terms assignments to the ORFs derived from the assemblies. HC, high confidence.

Sierro et al. Genome Biology 2013 14:R60   doi:10.1186/gb-2013-14-6-r60

Open Data