Open Access Research

A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat

Romain Philippe1, Etienne Paux1, Isabelle Bertin1, Pierre Sourdille1, Fréderic Choulet1, Christel Laugier1, Hana Šimková2, Jan Šafář2, Arnaud Bellec3, Sonia Vautrin3, Zeev Frenkel4, Federica Cattonaro5, Federica Magni5, Simone Scalabrin5, Mihaela M Martis6, Klaus FX Mayer6, Abraham Korol4, Hélène Bergès3, Jaroslav Doležel2 and Catherine Feuillet1*

Author Affiliations

1 INRA-UBP UMR 1095 Genetics, Diversity and Ecophysiology of Cereals, 5 Chemin de Beaulieu 63039 Clermont-Ferrand, France

2 Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany, Sokolovska 6, CZ-77200 Olomouc, Czech Republic

3 Centre National des Ressources Génomiques Végétales, INRA UPR 1258, 24 Chemin de Borde Rouge - Auzeville 31326 Castalnet Tolosan, France

4 University of Haifa, Institute of Evolution and Department of Evolutionary and Environmental Biology, Haifa 31905, Israel

5 Instituto di Genomica Applicata, Via J. Linussio 51, Udine, 33100, Italy

6 MIPS/IBIS; Helmholtz-Zentrum München, 85764 Neuherberg, Germany

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Genome Biology 2013, 14:R64  doi:10.1186/gb-2013-14-6-r64

Published: 25 June 2013

Additional files

Additional file 1:

Information on the 5,489 markers assigned to the physical map of wheat chromosome 1BL. Table listing the marker name, the marker type, the names of the deletion bin,the ID of the BAC clones andthe name of the physical contigsto which the marker is assigned,the position (in cM) of the markerson the Chinese Spring ×RenanF2 genetic map,the order of the geneand the level of confidence in this order, the unigene length, the ID of the orthologous genes in rice, sorghum and Brachypodium and the gene islands number for the 1,161 genes assigned to the physical map of the wheat chromosome 1BL.

Format: XLSX Size: 409KB Download file

Open Data

Additional file 2:

Features of the 616 contigs of the final LTC physical map of the wheat chromosome 1BL. Table listing the contig name, the number of clones, the contig size, the total number of markers, the number of genes, the name of the deletion bin to which the contig is assigned, the position on the 1BL neighbor genetic map and the number of the ordered contigs.

Format: XLSX Size: 41KB Download file

Open Data

Additional file 3:

GenomeZipper of wheat chromosome 1BL. Table listing the marker name, the position on the genotyping by sequencing genetic map, the ID of the orthologous genes in rice, sorghum and Brachypodium, the ID of the full-length cDNA matching the marker or the orthologous genes, the wheat Illumina reads matching the marker or orthologous gene and the ID of the wheat ESTs matching the marker or orthologous gene.

Format: XLSX Size: 297KB Download file

Open Data