Table 1

Distribution of the number of markers, genes and physical contigs in 9 deletion bins along the centromere-telomere axis of chromosome 1BL

Markers assigneda

Contigsb

Contigs sizec

Markersd

Genese

Gene densityf

Non-syntenic genesg

Genes in islandsh


Centromere

3

02.5

02.03

6

2

0.98

2

1

C-1BL11-0.23

115

75.5

93.15

722

168

1.80

99

115

1BL11-0.23-0.32

37

24.0

35.67

354

77

2.16

52

48

1BL6-0.32-0.47

36

27.0

29.05

247

68

2.34

24

37

1BL1-0.47-0.61

109

76.0

93.14

1160

232

2.49

114

158

1BL14-0.61-0.69

34

24.0

29.52

311

80

2.71

57

65

1BL2-0.69-0.74

79

55.0

53.71

714

155

2.89

102

105

1BL8-0.74-0.85

48

34.0

22.35

418

66

2.95

52

48

1BL3-0.85-0.89

51

35.5

23.88

507

81

3.39

47

62

1BL4-0.89-1.00

37

26.5

15.10

302

57

3.77

40

45

Total

549

380

397.6

4741

986

2.48

587

683


a Number of markers assigned to the deletion bins; bnumber of contigs assigned to the deletion bins; ccumulated size of the assigned contigs in Mb; dtotal number of markers in the assigned contigs; enumber of genes in the assigned contigs; fthe gene density in genes per Mb was estimated in each bin using the number of genes anchored divided by the cumulated contigs size; ggenes not conserved in syntenic regions of rice, Brachypodium or sorghum are indicated for each bin; hthe number of gene islands was calculated for each bin using the number of genes in the same BAC or overlapping BACs in each bin.

Philippe et al. Genome Biology 2013 14:R64   doi:10.1186/gb-2013-14-6-r64

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