Table 1

The T. urartu and T. turgidum final assembly statistics

T.urartu

T.turgidum


100-bp paired-end reads (n)

248.5 million

488.9 million

Reads after digital normalizationa (n)

47.3 million

110.7 million

Contigs (n)

86,247

140,118

Mean contig size (bp)

1,417 bp

1,299 bp

Min contig size (bp)

212 bp

298 bp

Max contig size (bp)

17,959 bp

26,226 bp

GC content (%)

49%

49%

Total transcriptome size (Mb)

122 Mb

181 Mb

Reads mapping to the assembly (% of total reads)

82.2%

81.5%

Reads mapped in proper pairs (% of total reads)

73.0%

71.5%

Unique alignments (% of total mapped)

52.8%

76.7%

Benchmark genesb assembled > 50% length in a single contig

12,693 (94%)

12,961 (96%)

Benchmark genesb assembled > 90% length in a single contig

10,727 (80%)

10,197 (76%)


aElimination of Homo sapiens,Escherichia coli, wheat mitochondrial, rRNA, and chloroplast sequences resulted in the elimination of 0.5% of the digitally normalized reads in T. urartu and 0.6% in T. turgidum.

b13,472 full-length cDNAs from the RIKEN Plant Science Center Japan [35].

Krasileva et al. Genome Biology 2013 14:R66   doi:10.1186/gb-2013-14-6-r66

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