Table 3

Comparison of predicted ORFs (excluding pseudogenes) with T. aestivum genomic DNA contigs

Transcriptome

T. urartu

T. turgidum


Putative correct homoeolog (Id ≥ 99% identity)

≥95% coverage in one CS contig

14,678

32,554

≥95% coverage in more than one CS contig

489

911

≥65% coverage in one or more CS contigs

2,094

3,136

Putative homoeolog from different genome (94%≤ Id < 99%)

≥95% coverage in one CS contig

12,239

17,437

≥95% coverage in more than one CS contig

1,146

1,549

≥65% coverage in one or more CS contigs

2,416

3,262

Not aligned

Id <94% or coverage <65%)

4,549

7,370

Number of query sequences with no significant BLAST hits (e-10)

195

414


Total number of query sequences

37,806

66,633


Krasileva et al. Genome Biology 2013 14:R66   doi:10.1186/gb-2013-14-6-r66

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