Associated material
Tools
Share this article
Email updates
Keep up to date with the latest news and articles from Genome Biology and BioMed Central.
Research
Retrospective genomic analysis of sorghum adaptation to temperate-zone grain production
1 Energy Biosciences Institute, University of Illinois, Urbana, IL, USA
2 Department of Crop Sciences, University of Illinois, Urbana, IL, USA
Genome Biology 2013, 14:R68 doi:10.1186/gb-2013-14-6-r68
Published: 26 June 2013Additional files
Additional File 1:
Table S1. SC and EP lines used in this study. Principal components analysis in the EP lines was used to assign SC-EP pairs to subpopulations. Plant height and flowering time phenotypes used for association mapping in the SC lines are also provided.
Format: XLSX Size: 92KB Download file
Additional File 2:
Figure S1. Enzyme effects on SNP output. Combining two double digests (PstI-HF/HinP1I and PstI-HF/BfaI) nearly doubles the number of SNPs called per sample over one double digest (Pst1-HF/HinP1I).
Format: PDF Size: 38KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional File 3:
Figure S2. Principal Component Analysis (PCA) of BTx406 seed source libraries. Twenty-eight libraries were created for BTx406 seed from three different sources (GRIN, Cornell, and Lubbock). The three outlier libraries from the GRIN collection were removed due to low concordance.
Format: PDF Size: 5KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional File 4:
Figure S3. Introgression maps for 390 SC lines.
Format: ZIP Size: 12.9MB Download file
Additional File 5:
Table S2. Number and percentage of introgressed, unexpected, and informative markers for each SC-EP pair.
Format: XLSX Size: 80KB Download file
Additional File 6:
Table S3. Physical map positions of unanchored SNPs
Format: XLSX Size: 60KB Download file
Additional File 7:
Figure S4. Introgression frequency, phenotypic associations, and population differentiation in the Ma1-Dw2 region on sorghum chromosome 6. Panels are the same as in Figures 3 to 6. The locations of Ma1 at 40.3 Mb is shown with a vertical dashed gray line.
Format: PDF Size: 64KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional File 8:
Figure S5. PCA of SC lines with and without SNPs in the three major introgressed regions.
Format: PDF Size: 90KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional File 9:
Figure S6. Subpopulation-specific introgression frequencies.
Format: PDF Size: 1.2MB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional File 10:
Table S4. Phenotypic associations with plant height and flowering time in 580 SC lines.
Format: XLSX Size: 1.4MB Download file
Additional File 11:
Table S5. List of barcoded adapters used in library preparation.
Format: XLSX Size: 38KB Download file
