Table 1 |
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|
Summary of key parameters of seven sequenced ant genomes |
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|
Harpegnathos saltator |
Linepithema humile |
Camponotus floridanus |
Pogonomyrmex barbatus |
Solenopsis invicta |
Atta cephalotes |
Acromyrmex echinatior |
Average |
Range |
|
|
|
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|
Depth of coverage |
104x |
23x |
102x |
12x |
70x |
19x |
123x |
64.7x |
(12x-123x) |
|
Assembly size (Mb) |
297 |
215.6 |
240 |
235 |
353 |
317 |
300 |
279.7 |
(215.6-353) |
|
Total genome size (Mb) |
330 |
250.8 |
313 |
267 |
608.15 |
303 |
335 |
343.9 |
(250.8-608.15) |
|
Contig N50 (bp) |
38,027 |
35,858 |
24,134 |
11,606 |
14,674 |
14,240 |
62,705 |
28,749.1 |
(11,606-62,705) |
|
Scaffold N50 (bp) |
59,8192 |
138,6360 |
602,923 |
793,749 |
720,578 |
5,154,504 |
1,094,267 |
1,478,653.3 |
(598192-5154504) |
|
G+C composition (%) |
45 |
38 |
34 |
37 |
36 |
33 |
34 |
36.7 |
(33-45) |
|
Protein-coding genes |
18,564 |
16,123 |
17,064 |
17,177 |
16,569 |
18,093 |
17,278 |
17,266.9 |
(16,123-18,564) |
|
Orthologs + co-orthologs |
11,695 |
12,860 |
11,433 |
12,857 |
12,590 |
12,617 |
12,121 |
- |
- |
|
Species-specific genes |
6,869 |
3,263 |
5,631 |
4,320 |
3,979 |
5,476 |
5,157 |
4,956.4 |
(3,263-6,869) |
|
Manually curated genes |
400 |
1,000 |
400 |
1,200 |
0 |
522 |
200 |
531.7 |
(0-1,200) |
|
Genes with EST support (%) |
84 |
51 |
81 |
43 |
56 |
40 |
84 |
62.7 |
(40-84) |
|
microRNA |
159 |
71 |
96 |
100 |
NA |
68 |
93 |
97.8 |
(68-159) |
|
Total repeat content (%) |
26.9 |
23.5 |
15.1 |
11.5 |
NA |
25.1 |
28 |
21.7 |
(11.5-28) |
|
|
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|
EST, expressed sequence tag; NA, not available. |
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|
Libbrecht et al. Genome Biology 2013 14:212 doi:10.1186/gb-2013-14-7-212 |
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