Table 1

Introns detected by whole transcriptome mapping

Sample

Introns

Confirm annotation (%)a

Match 5'

Match 3'

Novel


Trophozoite

1,628

1,345 (23%)

19

11

253

Cyst_8h

2,163

1,771 (30%)

23

10

359

Cyst_24h

1,955

1,536 (26%)

21

12

386

Cyst_48h

1,047

811 (14%)

15

5

216

Cyst_72h

1,272

1,027 (17%)

9

6

230

Excyst_2h

1,438

1,229 (21%)

12

6

191

Excyst_8h

764

666 (11%)

5

2

91

All

3,239

2,470 (42%)

35

17

717


aPercentage of 5,894 introns predicted from genome annotation.

Ehrenkaufer et al. Genome Biology 2013 14:R77   doi:10.1186/gb-2013-14-7-r77

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