Table 3

Gene Ontology terms associated with temporal gene expression profiles during excystation

Profile/clustera

GO category name

Fold enrichmentb

Corrected P-valuec


Profile 45

Protein binding

3.1

0.002

Catalytic activity

3.4

0.002

Metabolic process

3.4

0.05

Cluster (profiles 49, 40, 41, 37, 48, 44)

Zinc ion binding

1.7

<0.001

Catalytic activity

1.7

<0.001

Pyridoxal phosphate binding

3.7

0.024

Nucleic acid binding

1.6

0.028

Heat shock protein binding

3

0.032

Profile 49

Helicase activity

4.3

0.042

Ubiquitin-dependent protein catabolic process

4.1

0.05

Profile 40

Binding

2.1

0.01

Zinc ion binding

2

0.038

Profile 41

Membrane

3.7

0.006

Profile 37

Protein binding

2.4

0.022

Catalytic activity

2.5

0.048

Profile 47

Oxidoreductase activity

6.3

0.018

Cluster (profiles 0, 4, 7, 8, 11, 15, 16, 17, 18)

Ribosome

3.7

<0.001

Structural constituent of ribosome

3.6

<0.001

Translation

3.1

<0.001

Intracellular

1.5

<0.001

DNA binding

2.1

<0.001

Nucleosome

5.6

<0.001

Nucleus

2.1

<0.001

Nucleosome assembly

4

0.002

Signal transduction

1.6

0.024

Threonine-type endopeptidase activity

4.2

0.044

Proteasome core complex

4.2

0.044

Proteolysis involved in cellular protein catabolic process

4.2

0.044

Profile 17

Ribosome

7.1

<0.001

Structural constituent of ribosome

6.8

<0.001

Translation

6.3

<0.001

Intracellular

1.9

0.002

Profile 18

Intracellular

2.1

0.006

Ribosome

5

0.006

Structural constituent of ribosome

4.8

0.008

Translation

4.2

0.02

Signal transduction

3

0.024

Profile 7

Ribosome

5.3

0.002

Structural constituent of ribosome

5.1

0.002

Translation

4

0.012

DNA binding

3.1

0.04

Profile 8

Intracellular

2.3

0.01

Protein transport

3.6

0.012

GTP binding

3

0.024

Catalytic activity

3.2

0.024

Small GTPase mediated signal transduction

2.9

0.032

Profile 16

DNA binding

4.4

<0.001


aSee Figure 4 and Additional file 1 for profiles/clusters. bRatio of the observed number of genes with associated GO term to the number expected for a profile of the same size. cP-value Bonferroni-corrected for multiple tests.

Ehrenkaufer et al. Genome Biology 2013 14:R77   doi:10.1186/gb-2013-14-7-r77

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