Table 1

Performance of the algorithms on simulated data with one tumor population (n = 2)

% correct C

Copy number error (median)

Purity error (median)

k

THetA

ASCAT

CNAnorm

ABSOLUTE

THetA

ASCAT

CNAnorm

ABSOLUTE

THetA

ASCAT

CNAnorm

ABSOLUTE


3

100.0

85.0

40.0

70.0

0.0

0.0

0.103

0.000

0.004

0.040

0.068

0.010

4

90.0

55.0

8.3

50.0

0.0

0.0

0.163

0.013

0.004

0.037

0.064

0.010

5

85.0

50.0

6.7

15.0

0.0

0.013

0.185

0.160

0.004

0.062

0.038

0.075

6

55.0

40.0

0.0

15.0

0.0

0.026

0.291

0.433

0.006

0.063

0.066

0.157

7

30.0

15.0

0.0

10.0

0.031

0.036

0.445

0.471

0.005

0.069

0.108

0.149


Oesper et al. Genome Biology 2013 14:R80   doi:10.1186/gb-2013-14-7-r80

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