Table 1

Spectral counts of substrate composition-specific nucleic acid-binding proteins

U937

HepG2

HaCat




ssDNA

dsDNA

ssDNA

dsDNA

ssDNA

dsDNA







AC

Name

dN

dCdGm

dAdTs

dCmdG:dCmdG

dCdG:dCmdG

dCdG:dCdG

dAdT:dAdT

dN

dCdGm

dAdTs

dCmdG:dCmdG

dCdG:dCmdG

dCdG:dCdG

dAdT:dAdT

dN

dCdGm

dAdTs

dCmdG:dCmdG

dCdG:dCmdG

dCdG:dCdG

dAdT:dAdT


Q9UFW8

CGGBP1

0

23

0

6

5

7

0

0

0

0

4

10

13

0

0

0

0

0

0

1

0

P17096

HMGA1

0

0

12

0

0

0

4

0

0

10

0

0

0

14

0

0

2

0

0

0

0

P52926

HMGA2

0

0

0

0

0

0

0

0

0

4

0

0

0

10

0

0

0

0

0

0

0

Q9HBE1

PATZ1

0

0

0

0

0

0

0

2

0

0

0

0

0

0

0

0

0

0

0

0

0

Q8IVW6

ARID3B

0

0

0

0

0

0

0

0

0

2

0

0

0

9

0

0

0

0

0

0

0

Q99856

ARID3A

0

0

0

0

0

0

0

0

0

10

0

0

0

59

0

0

0

0

0

0

0

Q01826

SATB1

0

0

0

0

0

0

9

0

0

0

0

0

0

0

0

0

0

0

0

0

0


Nucleotide subtypes not displayed had zero spectral count (dN indicates ssDNA random sequences). AC=UniProt accession code.

D├╝rnberger et al. Genome Biology 2013 14:R81   doi:10.1186/gb-2013-14-7-r81

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