Table 1

Coding single-nucleotide polymorphisms and small indels identified in the comparison between C57BL/6N and C57BL/6J

Chr

Position

B6J

base

B6N

base

Strain

Gene name

B6J

amino acid

B6N

amino acid


Nonsense polymorphism

13

65023280

C

T

B6N

Spata31

Arginine

*(stop)

Missense polymorphisms

1

59904011

G

A

B6N

Bmpr2

Arginine

Glutamine

3

95538799

T

C

B6J

Ecm1

Isoleucine

Valine

3

96658480

A

G

B6J

Pdzk1

Asparagine

Aspartic acid

4

21800831

C

G

B6J

Sfrs18

Arginine

Glycine

4

137777588

C

T

B6N

Hp1bp3

Leucine

Phenylalanine

4

140354038

A

G

B6N

Padi3

Leucine

Proline

4

148318468

T

C

B6J

Casz1

Leucine

Proline

5

90204376

C

T

B6N

Adamts3

Valine

Isoleucine

5

97187161

T

C

B6J

Fras1

Leucine

Proline

5

113191741

C

T

B6N

Myo18b

Arginine

Histidine

6

39350455

T

A

B6J

Mkrn1

Asparagine

Tyrosine

7

3222538

T

C

B6J

Nlrp12

Lysine

Arginine

7

63386662

G

A

B6J

Herc2

Glycine

Aspartic acid

7

86256240

A

C

B6J

Acan

Histidine

Proline

7

110121823

C

T

B6N

Olfr577

Valine

Isoleucine

7

127278693

G

A

B6N+Spretus

Zp2

Alanine

Valine

7

129311164

C

T

B6N

Plk1

Arginine

Tryptophan

9

24935069

C

G

B6N

Herpud2

Valine

Leucine

10

66700922

T

C

B6J

Jmjd1c

Leucine

Proline

10

78632222

A

G

B6N

Vmn2r80

Asparagine

Serine

10

87554578

T

C

B6N

Pmch

Isoleucine

Threonine

11

46036117

G

A

B6N

Cyfip2

Serine

Phenylalanine

11

90341985

C

T

B6N

Stxb4

Stxb4

Threonine

13

21560172

A

G

B6J

Nkapl

Glycine

Arginine

13

73465884

A

G

B6J

Ndufs6

Valine

Alanine

13

93833534

C

G

B6J

Cmya5

Alanine

Proline

14

70986011

G

T

B6N

Fam160b2

Serine

Arginine

15

11266138

G

T

B6N

Adamts12

Cysteine

Phenylalanine

15

77468437

A

C

B6J

Apol11b

Isoleucine

Arginine

16

35291630

G

A

B6N

Adcy5

Valine

Methionine

17

47537359

T

C

B6J

Guca1a

Isoleucine

Valine

X

131227581

C

A

B6N

Armcx4

Alanine

Aspartic acid

Splice site polymorphism

5

54280548

A

G

B6J

Tbc1d19

-

-

Frameshift 1 bp deletions

1

141133664

G

-

B6N

Crb1

-

-

9

65127938

G

-

B6J

Cilp

-

-


Abbreviations: Chr, chromosome.

Simon et al. Genome Biology 2013 14:R82   doi:10.1186/gb-2013-14-7-r82

Open Data