Table 1
Phenotype annotation resources
	URL
Representation
Adult Mouse Ontology	http://bioportal.bioontology.org/ontologies/1000 webcite
FMA	http://sig.biostr.washington.edu/projects/fm webcite
FYPO	http://bioportal.bioontology.org/ontologies/1689 webcite
GO	http://www.geneontology.org webcite
HPO	http://www.human-phenotype-ontology.org webcite
MP	http://www.obofoundry.org/cgi-bin/detail.cgi?id=mammalian_phenotype webcite
OMIM	http://www.ncbi.nlm.nih.gov/omim webcite
PATO	http://obofoundry.org/wiki/index.php/PATO:Main_Page webcite
WP	http://www.obofoundry.org/cgi-bin/detail.cgi?id=worm_phenotype webcite
Acquisition
DECIPHER	http://decipher.sanger.ac.uk webcite
FlyBase	http://flybase.org webcite
MetaMap	http://www.nlm.nih.gov/research/umls/implementation_resources/metamap.html webcite
MIPS ATD	http://mips.helmholtz-muenchen.de/plant/athal webcite
MPD	http://phenome.jax.org webcite
NCBO Annotator	http://bioportal.bioontology.org/annotator webcite
OrphaNET	http://www.orpha.net webcite
PhenomicDB	http://www.phenomicdb.de webcite
PhenoHM	http://phenome.cchmc.org/phenoBrowser/Phenome webcite
PhenoScape	http://phenoscape.github.io webcite
Textpresso	http://www.textpresso.org webcite
WormBase	http://www.wormbase.org webcite
ZFIN	http://zfin.org webcite

DECIPHER, Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources; FMA, Foundation Model of Anatomy; FYPO, Worm Phenotype Ontology; GO, Gene Ontology; HPO, Human Phenotype Ontology; MIPS, Munich Information Center for Protein Sequence; MP, Mouse Phenotype Ontology; MPD, Mouse Phenome Database; NCBO, National Center for Biomedical Ontology; OMIM, Online Mendelian Inheritance of Man database; PATO, Phenotype and Trait Ontology; WP, Worm Phenotype Ontology; ZFIN, Zebrafish Information Network.

Collier et al.

Collier et al. Genome Biology 2013 14:214   doi:10.1186/gb-2013-14-9-214