Table 3
Chromosome level breakdown of haplotype statistics
Chrom	Number of clones	Number of heterozygous. variants	Fraction of heterozygous variants phased	Number of contigs	N50 Haplotype length
		(BAC + CGI WGS)
1	6,892	148,691	0.973	219	2,166,488
2	7,632	156,474	0.978	195	2,905,522
3	6,677	147,498	0.985	146	3,015,997
4	6,937	159,704	0.982	106	4,113,256
5	6,101	127,746	0.983	117	2,700,783
6	5,818	142,863	0.981	119	3,005,140
7	4,781	113,746	0.974	150	2,621,008
8	4,589	98,664	0.982	114	2,413,181
9	3,485	80,480	0.966	125	2,276,528
10	4,104	99,111	0.969	109	2,264,959
11	4,233	90,557	0.979	113	3,368,062
12	4,150	93,795	0.979	116	2,641,808
13	3,395	75,463	0.984	51	2,945,506
14	2,846	62,844	0.967	69	3,059,729
15	2,520	55,794	0.967	71	2,067,670
16	2,031	59,080	0.956	123	1,252,516
17	1,965	47,238	0.96	116	1,485,600
18	2,547	56,853	0.981	43	3,345,667
19	1,155	32,849	0.956	110	660,242
20	1,649	39,551	0.958	66	1,608,505
21	1,170	34,095	0.958	36	3,226,907
22	768	19,020	0.956	65	1,057,117
Total	85,445	1,942,116	0.975	2,379	2,640,036

Abbreviations:BAC, bacterial artificial chromosome; Chrom, chromosome; CGI, Complete Genomics Institute; WGS, whole genome sequencing.

Lo et al.

Lo et al. Genome Biology 2013 14:R100   doi:10.1186/gb-2013-14-9-r100