Table 3

Chromosome level breakdown of haplotype statistics
Chrom Number of clones Number of heterozygous. variants Fraction of heterozygous variants phased Number of contigs N50 Haplotype length
(BAC + CGI WGS)
1 6,892 148,691 0.973 219 2,166,488
2 7,632 156,474 0.978 195 2,905,522
3 6,677 147,498 0.985 146 3,015,997
4 6,937 159,704 0.982 106 4,113,256
5 6,101 127,746 0.983 117 2,700,783
6 5,818 142,863 0.981 119 3,005,140
7 4,781 113,746 0.974 150 2,621,008
8 4,589 98,664 0.982 114 2,413,181
9 3,485 80,480 0.966 125 2,276,528
10 4,104 99,111 0.969 109 2,264,959
11 4,233 90,557 0.979 113 3,368,062
12 4,150 93,795 0.979 116 2,641,808
13 3,395 75,463 0.984 51 2,945,506
14 2,846 62,844 0.967 69 3,059,729
15 2,520 55,794 0.967 71 2,067,670
16 2,031 59,080 0.956 123 1,252,516
17 1,965 47,238 0.96 116 1,485,600
18 2,547 56,853 0.981 43 3,345,667
19 1,155 32,849 0.956 110 660,242
20 1,649 39,551 0.958 66 1,608,505
21 1,170 34,095 0.958 36 3,226,907
22 768 19,020 0.956 65 1,057,117
Total 85,445 1,942,116 0.975 2,379 2,640,036

Abbreviations:BAC, bacterial artificial chromosome; Chrom, chromosome; CGI, Complete Genomics Institute; WGS, whole genome sequencing.

Lo et al.

Lo et al. Genome Biology 2013 14:R100   doi:10.1186/gb-2013-14-9-r100

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