|E. coli correctness on GAGE metrics|
|Organism||Assembled by||Number of contigs||N50||Number of structural differences||Number of discordant bases||QV||Number of indels > 5 bp|
|E. coli K12||MiSeq 100×||139||113,852||1||59||49.00||4|
|MiSeq 100× + 200× CLR||2||2,367,319||2||11||56.26||2|
|454 50× + 200× CLR||1||4,649,004||2||11||56.26||2|
|CCS 25X + 200× CLR||1||4,653,267||0||14||55.22||2|
Organism: the genome being assembled. Assembled by: the short-read data used for correction and/or assembly. Number of contigs: the number of contigs comprising the assembly. N50: N such that 50% of the genome is contained in contigs of length ≥N. Number of structural differences: the sum of inversions, relocations, and translocations versus the reference using GAGE metrics . Number of discordant bases: total number of different bases when compared to the reference. QV: estimated from the number of indels and SNPs as . Indels >5 bp: the number of indels >5 bp reported by GAGE metrics . Assemblies were generated as in Tables 2 and 3.
Koren et al.
Koren et al. Genome Biology 2013 14:R101 doi:10.1186/gb-2013-14-9-r101