Additional file 7: Figure S3.
Marey maps and recombination landscapes along the chromosomes for three examples illustrating the imputation of regions with missing or unreliable data: CFD01 chromosome 1, CFF07 chromosome 1, and CFF01 chromosome 3. The x-axis indicates physical position of the SNPs on the B73 physical map in megabase pairs. The left y-axis indicates genetic map position in centiMorgans. The right y-axis indicates recombination rate in cM/Mbp. Each black empty circle corresponds to a SNP. Red dots indicate the outlier markers removed from the smoothing analysis. Dark blue dotted line: smoothed Marey map. Red dotted line: first derivative of the smoothed Marey map. Hatched rectangles: regions masked when going from bare to masked Marey maps (see Materials and methods). Light blue solid line: imputed smoothed Marey map obtained after imputation in the excluded regions, using data from all maps pooled. Pink solid curve: recombination rate computed as the first derivative of the imputed smoothed Marey map.
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Bauer et al. Genome Biology 2013 14:R103 doi:10.1186/gb-2013-14-9-r103