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Open Access Research

Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure

Dale Muzzey1, Katja Schwartz2, Jonathan S Weissman1* and Gavin Sherlock2*

Author Affiliations

1 Department of Cellular and Molecular Pharmacology, California Institute for Quantitative Biomedical Research, and Howard Hughes Medical Institute, University of California, San Francisco, San Francisco, CA 94158, USA

2 Department of Genetics, Stanford University, Stanford, CA 94305, USA

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Genome Biology 2013, 14:R97 doi:10.1186/gb-2013-14-9-r97

Published: 11 September 2013

Additional files

Additional file 1:

Figures S1 to S5, Table S1.

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Additional file 2:

Table listing characteristics of C. albicans ORFs, including coordinates in phased assembly, allele-specific expression levels, number of SNPs and indels in coding region, and number of indels in promoter.

Format: XLSX Size: 759KB Download file

Open Data

Additional file 3:

Phased FASTA file (SNPs only).

Format: ZIP Size: 7.9MB Download file

Open Data

Additional file 4:

Phased FASTA file (SNPs plus indels).

Format: ZIP Size: 7.9MB Download file

Open Data