Table 3

Gene expression and methylation correlation
Gene region Neg PCCsa Pos PCCsb PCCs < -0.5c PCCs >0.5d Totale
Global 5,710 4,410 1,713 1,090 10,120
56.42% 43.58% 16.93% 10.77%
Promoter + CGI 3,048 2,325 618 567 5,373
56.73% 43.27% 11.50% 10.55%
TSS1500 4,175 4,581 958 1,064 8,756
47.68% 52.32% 10.94% 12.15%
TSS200 4,157 3,199 979 747 7,356
56.51% 43.49% 13.31% 10.15%
5’UTR 1,500 1,604 382 442 3,104
48.32% 51.68% 12.31% 14.24%
1st exon 1,330 1,409 272 357 2,739
48.56% 51.44% 9.93% 13.03%
Body 5,156 4,620 1,573 1,185 9,776
52.74% 47.26% 16.09% 12.12%
3’UTR 3,302 3,494 903 854 6,796
48.59% 51.41% 13.29% 12.57%
Shores 4,534 3,365 1,362 792 7,899
57.40% 42.60% 17.24% 10.03%
Shelves 2,342 2,201 718 576 4,543
51.55% 48.45% 15.80% 12.68%

aNegative Pearson Correlation coefficients (PCCs).

bPositive PCCs.

cStrong negative PCCs, smaller than -0.5.

dStrong positive PCCs, larger than 0.5.

eTotal number of tDMRs in named category.

Lokk et al.

Lokk et al. Genome Biology 2014 15:r54   doi:10.1186/gb-2014-15-4-r54

Open Data