Table 4

Gene expression and methylation correlation in tDMRs
Gene region Neg PCCsa Pos PCCsb PCCs < -0.5c PCCs >0.5d Totale
Global 2,288 1,332 749 372 3,620
63.2% 36.8% 20.7% 10.3%
Promoter + CGI 489 134 76 37 623
78.5% 21.5% 12.2% 5.9%
5’UTR 264 279 57 77 543
48.6% 51.4% 10.5% 14.2%
1st exon 212 217 41 61 429
49.4% 50.6% 9.6% 14.2%
Body 1,148 737 377 224 1,885
60.9% 39.1% 20.0% 11.9%
3’UTR 190 209 51 62 399
47.6% 52.4% 12.8% 15.5%
Shores 1,275 745 423 202 2,020
63.1% 36.9% 20.9% 10.0%
Shelves 445 269 169 82 714
62.3% 37.7% 23.7% 11.5%

aNegative Pearson Correlation coefficients (PCCs).

bPositive PCCs.

cStrong negative PCCs, smaller than -0.5.

dStrong positive PCCs, larger than 0.5.

eTotal number of tDMRs in named category.

Lokk et al.

Lokk et al. Genome Biology 2014 15:r54   doi:10.1186/gb-2014-15-4-r54

Open Data