|
SeqFEATURE models built from PROSITE motifs |
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| PROSITE pattern |
Position(s) |
Residue |
Atom(s) |
|
|
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| 2FE2S_FERREDOXIN |
1, 6, 9 |
Cys |
SG |
| 4FE4S_FERREDOXIN |
1, 3, 5, 7 |
Cys |
SG |
| AA_TRANSFER_CLASS_1 |
4 |
Lys |
NZ |
| AA_TRANSFER_CLASS_2 |
4 |
Lys |
NZ |
| AA_TRANSFER_CLASS_3 |
19 |
Lys |
NZ |
| ADH_SHORT |
3 |
Tyr |
OH |
| ADH_ZINC |
2 |
His |
ND1, NE2 |
| ADX |
6, 9 |
Cys |
SG |
| ALDEHYDE_DEHYDR_CYS |
6 |
Cys |
SG |
| ALDEHYDE_DEHYDR_GLU |
2 |
Glu |
OE1, OE2 |
| ASP_PROTEASE |
4 |
Asp |
OD1, OD2 |
| ASX_HYDROXYL |
3 |
Asn |
ND2, OD1 |
| BETA_LACTAMASE_A |
5 |
Ser |
OG |
| BETA_LACTAMASE_B_1 |
4, 6 |
His |
ND1, NE2 |
| 8 |
Asp |
OD1, OD2 |
|
| BPTI_KUNITZ_1 |
4, 8 |
Cys |
SG |
| C_TYPE_LECTIN_1 |
1 |
Cys |
SG |
| CARBOXYLESTERASE_B_1 |
11 |
Ser |
OG |
| CARBOXYLESTERASE_B_2 |
3 |
Cys |
SG |
| CHITINASE_18 |
9 |
Glu |
OE1, OE2 |
| COPPER_BLUE |
11 |
His |
ND1, NE2 |
| 7 |
Cys |
SG |
|
| CYTOCHROME_P450 |
8 |
Cys |
SG |
| EF_HAND |
1, 3, 5, 9 |
Asp |
OD1, OD2 |
| 7, 12 |
Tyr |
OH |
|
| 3, 5, 9 |
Asn |
ND2, OD1 |
|
| 5, 9 |
Ser |
OG |
|
| 7, 9 |
Thr |
OG1 |
|
| 7 |
Glu |
OE1, OE2 |
|
| 7 |
Lys |
NZ |
|
| EGF_1 |
1, 3, 7 |
Cys |
SG |
| EGF_2 |
1, 3, 8 |
Cys |
SG |
| GLYCOSYL_HYDROL_F10 |
7 |
Glu |
OE1, OE2 |
| GLYCOSYL_HYDROL_F5 |
7 |
Glu |
OE1, OE2 |
| HIPIP |
1, 7 |
Cys |
SG |
| HMA_1 |
5, 8 |
Cys |
SG |
| IG_MHC |
3 |
Cys |
SG |
| IMP_1 |
4 |
Asp |
OD1, OD2 |
| KAZAL |
1, 3, 7, 9 |
Cys |
SG |
| LIPASE_SER |
7 |
Ser |
OG |
| LIPOYL |
9 |
Lys |
NZ |
| PA2_HIS |
4 |
His |
ND1, NE2 |
| PEROXIDASE_1 |
8 |
His |
ND1, NE2 |
| PEROXIDASE_2 |
8 |
His |
ND1, NE2 |
| PHOSPHOPANTETHEINE |
6 |
Ser |
OG |
| PROTEIN_KINASE_ST |
5 |
Asp |
OD1, OD2 |
| PTS_HPR_SER |
5 |
Ser |
OG |
| RNASE_T2_1 |
4 |
His |
ND1, NE2 |
| SHIGA_RICIN |
5 |
Glu |
OE1, OE2 |
| 8 |
Arg |
NE, NH1, NH2 |
|
| SMALL_CYTOKINES_CC |
1, 2, 11, 17 |
Cys |
SG |
| SNAKE_TOXIN |
2, 4, 7, 8 |
Cys |
SG |
| SUBTILASE_ASP |
5 |
Asp |
OD1, OD2 |
| THIOL_PROTEASE_ASN |
6 |
Asn |
ND2, OD1 |
| THIOL_PROTEASE_HIS |
3 |
His |
ND1, NE2 |
| THIOREDOXIN |
8, 11 |
Cys |
SG |
| TRYPSIN_HIS |
5 |
His |
ND1, NE2 |
| TRYPSIN_SER |
6 |
Ser |
OG |
| TYR_PHOSPHATASE_1 |
3 |
Cys |
SG |
| UBIQUITIN_CONJUGAT_1 |
10 |
Cys |
SG |
| ZINC_FINGER_C2H2_1 |
1, 3 |
Cys |
SG |
| 7, 9 |
His |
ND1, NE2 |
|
| ZINC_PROTEASE |
3, 7 |
His |
ND1, NE2 |
| 4 |
Glu |
OE1, OE2 |
|
|
Some PROSITE patterns have multiple functional residues, and so more than one model was built for these patterns (for example, multiple EF_HAND models are built). Many hits will score high on all models, but distantly related sites may hit only a subset. SeqFEATURE models are named by concatenating the PROSITE-PATTERN, POSITION, RESIDUE and ATOM for unambiguous identification. | |||
Wu et al. Genome Biology 2008 9:R8 doi:10.1186/gb-2008-9-1-r8 |
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