GSMN-TB [Model 1]

Sheet 1 (reactions)

Row 7, column F: Rv0162c or Rv0761c or Rv1530 or Rv1862 or Rv3086 or Rv2259 should be Rv0162c OR Rv0761c OR Rv1530 OR Rv1862 OR Rv3086 OR Rv2259

Row 462, column E: 2.7.- should be 2.7.-.-

Row 738, column B: 1.01 PHOSPHO-PENTA-METHYL-TRICONTANOYL-COA + 1.01 GDPMAN = 1 MPM + 1.01 GDP + 1.01 COA should be 1.01 PHOSPHO-PENTA-METHYL-TRICONTANOYL-COA + 1.01 GDPMAN = 1 MPD + 1.01 GDP + 1.01 COA

Row 867, column B: 1 TAGxt = 1 TAGcat should be 1 TAGcatxt = 1 TAGcat

Sheet 2 (metabolites)

Row 98, column A: ARAbr1brGALACTANDPP should be ARA[1]GALACTANDPP

Row 118, column A: brn-1brPOLYP should be (n-1)POLYP

Row 119, column A: brnbrPOLYP should be (n)POLYP

Row 420, column A: MOLYBDENUM should be MOLYBDENUM-CO

Row 607, column A: TAG should be TAGcat

Row 630, column A: TREHALOSEMONOMYCOLATEbrCYbr should be TREHALOSEMONOMYCOLATE(CY)

Row 641, column A: UDPbrNAM:NGMbrAGMDAPIM should be UDP[NAM:NGM]AGMDAPIM

Row 642, column A: UDPbrNAM:NGMbrAGMDAPIMAA should be UDP[NAM:NGM]AGMDAPIMAA

Row 643, column A: UDPbrNAM:NGMbrALA should be UDP[NAM:NGM]ALA

Row 644, column A: UDPbrNAM:NGMbrALAGLU should be UDP[NAM:NGM]ALAGLU

Errors (summarized):

No enzymes found in: hypothetical, No EC, no ec (a total of 59 reactions)

Some metabolites in the metabolite list remain unused in the reactions

5PARAPP; CATECHOL; CROTONOYLCOA; DGLN; DPPARA; FUC1P; GUAIACOL; IDP; ITP; LACTAL; MBTA-HOLO; MBTB-HOLO; MBTCD-HOLO; MBTE-HOLO; MBTF-HOLO; MYCOTHIONE; PPPI; PURI5P; RHYDROXYBUTANOYL; SUGARS; THPTGLU

Some metabolites in the reactions remain unlisted in the metabolite list

APO-LIPO, BSA, CISACONITATE, DC, DU, ELECTROPHILE-X, GLUC, GLUCAN, GLYN, H2X, HBARHAM1, HBARHAM2, HYDROXYGLU, MBT-HOLO, METHYLISOCITRATE, MYCOTHIOL-S-CONJUGATE, N-ACETYL-S-CONJUGATE, OCTANOYL-ACP, PHBAD1, PHBAD2, RTHIO*, SDLIPO, TAGbio, URI

Jamshidi and Palsson [Model 2]

Errors (summarized):

A total of 18 gene combinations were ambiguous - resolved by assuming they are in DNF for