# Spivakov et al. Analysis of variation at transcription factor binding sites in Drosophila and humans # Additional file 6. Relationship between CTCF binding and motif conservation # and variation in three individuals from Maurano et al., 2012 [44]. # # ALLELES - a codified string indicating whether the CTCF binding site on # each strand of each profiled individual corresponds to the reference (0) or alternative (1) allele. # 9 indicates undetected sequence. # Individuals are listed in the following order: GM12872, GM12873, GM12874. # (the same as the order of their ChIP signals in subsequent columns) # SEQ:COUNT - the number of detected strands corresponding to each allele (max 12) # REF_ALT_HOMOZ_ChIP_DELTA - the difference between the ChIP signals in # homozygous individuals with the reference and alternative alleles, respectively # (mean values are used if the number of individuals of either type is higher than one). # NA indicates that no homozygous individuals for either (or both) # alleles have been detected. # WHICH_MAJOR - specifies whether the REF or ALT variant of the polymorphic SNP mapping to the binding site # is globally the most frequent based on the data from ref 77. CHR START END STRAND BLS REF ALT REF_PWM_SCORE ALT_PWM_SCORE REF_ALT_SCORE_DELTA SEQ:COUNT ALLELES GM12872_norm_ChIP_signal GM12873_norm_ChIP_signal GM12874_norm_ChIP_signal REF_ALT_HOMOZ_ChIP_DELTA WHICH_MAJOR 1 3481967 3481985 1 0.834302984510767 AGGCCACCAGGGGGTGCCA AGCCCACCAGGGGGTGCCA 13.7715161645128 11.4891337788362 2.28238238567653 AGGCCACCAGGGGGTGCCA:3,AGCCCACCAGGGGGTGCCA:3 101100 238.523205761237 186.340881414467 251.855333517059 65.51445 REF 1 8435045 8435063 1 0.278050623347185 CCACCACTGGATGGCATCA CAACCACTGGATGGCATCA 8.66995640204004 8.78773943769643 -0.11778303565638 CCACCACTGGATGGCATCA:4,CAACCACTGGATGGCATCA:2 101000 51.8287499735804 48.5621937275193 72.238064704577 NA REF 1 15455191 15455209 1 0.51681148469966 TCGCCACTAGATGGCAGGA TTGCCACTAGATGGCAGGA 13.384541374014 13.6076849253282 -0.223143551314209 TCGCCACTAGATGGCAGGA:4,TTGCCACTAGATGGCAGGA:2 100001 262.021376989514 237.620878427272 250.39601413473 NA REF 1 20539507 20539525 1 1 CTTCCACTAGATGGCGCTG CTTCCACTAGATGGCGCTG 14.0211930269648 12.2481256907489 1.7730673362159 CTTCCACTAGATGGCGATG:5,CTTCCACTAGATGGCGCTG:1 101111 221.25953537491 143.184669520964 132.581458420283 NA REF 1 20901907 20901925 1 0.145296562145825 GGTCCAGTAGGGGGCGCAC GGTCCAGTAGGGGGCACAC 12.318131696259 12.0063520722281 0.311779624030841 GGTCCAGTAGGGGGCGCAC:5,GGTCCAGTAGGGGGCACAC:1 000010 188.243544662443 112.231075448177 114.056191044579 NA REF 1 28417892 28417910 1 0.0184359652436721 CCTCCACCAGAGGGAGCCC CCTCCACCAGAAGGAGCCC 11.8641344007574 9.64856068475299 2.21557371600442 CCTCCACCAGAGGGAGCCC:4,CCTCCACCAGAAGGAGCCC:2 001001 138.794233723185 101.040944524556 109.161111952012 NA REF 1 38455881 38455899 1 0.838685304117869 ATGCCTCCAGGGGGCATAG ATGCCTCCAGCGGGCATAG 9.01419120781243 4.88705682276733 4.12713438504509 ATGCCTCCAGGGGGCATAG:4,ATGCCTCCAGCGGGCATAG:2 000110 536.112695711158 443.958705261057 397.343728258506 NA REF 1 40138497 40138515 1 0.99335096335474 TGGTCAGCAGAGGGCGCGC TGGTCAGCAGAGGGCGCGC 11.5083451787288 12.0245616511296 -0.516216472400867 TGGTCAGCAGGGGGCGCGC:4,TGGTCAGCAGAGGGCGCGC:2 001111 0 140.82785708683 191.422182571698 -166.12502 REF 1 41898566 41898584 -1 0.926482810729127 GGGCCAGCAGGGGGCGCTG GGGACAGCAGGGGGCGCTG 15.3593342894105 12.6737569441604 2.68557734525015 GGGCCAGCAGGGGGCGCTG:4,GGGACAGCAGGGGGCGCTG:2 001100 343.282719461098 244.864761672439 327.495246073637 90.524225 REF 1 54535909 54535927 1 0.876463921420476 TAATCACTAGGGGGCAATA TAATCACTAGAGGGCAATA 11.2416927526342 10.7254762802333 0.516216472400867 TAATCACTAGGGGGCAATA:5,TAATCACTAGAGGGCAATA:1 000010 78.259627281781 52.8938368917076 59.3813348856731 NA REF 1 55257756 55257774 -1 0.857650170003778 GTGCCACCAGGTGGTGGTA CTGCCACCAGGTGGTGGTA 12.1259373078869 13.5122316690067 -1.38629436111989 GTGCCACCAGGTGGTGGTA:4,CTGCCACCAGGTGGTGGTA:2 101000 141.579859277391 156.047614620254 139.212468150857 NA REF 1 78580218 78580236 -1 0 CAGCCTCCAGAGGGCAGTT CAGCCTCCAGAGGGCAGTT 11.339535108754 11.6513147327848 -0.311779624030841 CAGCCTCCAGAGGGCGGTT:4,CAGCCTCCAGAGGGCAGTT:2 011101 80.334208395382 73.6896058215063 90.5004935628272 NA REF 1 85219364 85219382 1 0.553456743483189 TCACCAGCGGGGGACAGCG TCACCAGCGGGGGACAGCG 8.91825938731155 6.82639532563316 2.09186406167839 TCACCTGCGGGGGACAGCG:5,TCACCAGCGGGGGACAGCG:1 101111 299.98572497449 343.913468557271 313.220532181855 NA REF 1 85219407 85219425 -1 0.418738194182093 TGGCCACTTGGTGTCGCTG TGGCCACTTGGTGTCGCTG 10.7757348878151 8.94315342406674 1.83258146374831 GGGCCACTTGGTGTCGCTG:5,TGGCCACTTGGTGTCGCTG:1 101111 299.98572497449 343.913468557271 313.220532181855 NA REF 1 85238204 85238222 -1 0.602720060445788 CCACCACTAGGTGGCGCAA CCACCACTAGGTGGCGCAA 14.2378564789095 13.9260768548786 0.311779624030841 CCACCACTAGGTGGCACAA:3,CCACCACTAGGTGGCGCAA:3 010101 310.342776694841 287.003798360447 231.262285856559 NA REF 1 93770369 93770387 1 0.145296562145825 CAGCCACTAGAGGGTGCCA CAGGCACTAGAGGGTGCCA 13.2355311067895 9.4513414728712 3.78418963391826 CAGCCACTAGAGGGTGCCA:4,CAGGCACTAGAGGGTGCCA:2 101000 131.487001489116 141.754862041566 123.512709710763 NA REF 1 110075084 110075102 -1 0.652058934642992 CAACCACAAGGGGGCAGTG AAACCACAAGGGGGCAGTG 13.7000779580441 12.5369271482384 1.16315080980568 CAACCACAAGGGGGCAGTG:4,AAACCACAAGGGGGCAGTG:2 011000 409.774501616311 445.779325821986 407.045162875604 NA REF 1 111765655 111765673 1 0.11696259916887 CAACCACGAGAGGGCGCCC CAACCACGAGAGGGCGACC 12.4636986323948 10.6906312961789 1.7730673362159 CAACCACGAGAGGGCGCCC:5,CAACCACGAGAGGGCGACC:1 000001 319.591600799045 365.489926509812 302.761215174579 NA REF 1 153590248 153590266 -1 0.573403853418965 CCACCACCAGAGGGAGCAG CCACCACCAGAGTGAGCAG 11.9712362565449 7.38626877787437 4.58496747867057 CCACCACCAGAGGGAGCAG:4,CCACCACCAGAGTGAGCAG:2 000011 287.11963415535 246.936501423991 11.2948873951811 255.733175 REF 1 156326888 156326906 1 0 CCGCCGCTAGGTGGCGGGC CCGCCGCTAGGTGGCGGGC 10.5292540018359 9.43064171316779 1.09861228866811 CCGCCGCAAGGTGGCGGGC:5,CCGCCGCTAGGTGGCGGGC:1 011111 347.541283074673 165.008193718715 223.453861143037 NA REF 1 157281101 157281119 1 0.0787306384586324 CTCCCACTAGGGGTCATCA CTCCCACTAGGGGTCATCA 8.76427782351521 4.63714343847012 4.12713438504509 CTCCCACTAGTGGTCATCA:4,CTCCCACTAGGGGTCATCA:2 011011 174.669567842854 109.954289181274 221.15805868099 NA REF 1 158087740 158087758 1 0.391839818662637 TCTCCCCCAGGGGGAGCTG TCTCCCCCATGGGGAGCTG 9.03259394997558 4.43747409984099 4.59511985013459 TCTCCCCCAGGGGGAGCTG:4,TCTCCCCCATGGGGAGCTG:2 011000 63.2609801281242 0 115.746850043883 NA REF 1 159791457 159791475 -1 0 GCGCCACCAGACGGCAGCC GCGCCACCAGAGGGCAGCC 8.89511982032072 12.9024530055532 -4.00733318523247 GCGCCACCAGACGGCAGCC:5,GCGCCACCAGAGGGCAGCC:1 000100 0 138.487993129 11.2948873951811 NA REF 1 160070943 160070961 1 0 CGGCCAGCAGAGGGAGCCC TGGCCAGCAGAGGGAGCCC 13.6324531673942 14.0787402700226 -0.446287102628419 CGGCCAGCAGAGGGAGCCC:5,TGGCCAGCAGAGGGAGCCC:1 000100 376.80361629624 360.370227262852 356.846371890921 NA REF 1 160804931 160804949 1 0.288779750661126 TGGCCACCAGGAGGCAGTG TGGCCACCAGGAGGCAGTG 14.6701561220898 10.8859664881716 3.78418963391826 TGGGCACCAGGAGGCAGTG:5,TGGCCACCAGGAGGCAGTG:1 111011 72.2690070986968 91.0455495096513 46.9569496672787 NA REF 1 167509787 167509805 -1 0.408915753683415 TAGCCACTAGGGGGCACTG TAGCCCCTAGGGGGCACTG 16.1467418319021 11.7522926772297 4.39444915467244 TAGCCACTAGGGGGCACTG:5,TAGCCCCTAGGGGGCACTG:1 001000 111.441786744541 106.777845873368 107.733036841706 NA REF 1 205110938 205110956 -1 0.293842085379675 TAGCCAGCAGATGGCAGCA TAGCCAGCAGATGGCAGCA 14.7953344948317 15.3115509672326 -0.516216472400867 TAGCCAGCAGGTGGCAGCA:4,TAGCCAGCAGATGGCAGCA:2 010111 191.773201514456 190.53904829263 148.380475092584 NA REF 1 211526412 211526430 -1 0.319607102380053 CTGCCACTAGGGGGCTCCG CTGCCACTAGGGGGCTCCA 12.5565487863583 12.9734425902901 -0.416893803931787 CTGCCACTAGGGGGCTCCG:5,CTGCCACTAGGGGGCTCCA:1 010000 253.52107729991 264.155072695609 182.077835042537 NA REF 1 212955961 212955979 -1 0.32550056667926 TATGCAGCAGGTGGCAGTA TATGCAGCAGGTGGCAGTA 10.5724328087348 10.3058041454808 0.266628663253947 TATGCAGTAGGTGGCAGTA:4,TATGCAGCAGGTGGCAGTA:2 111100 43.8320260401241 51.314196751695 42.6353583840547 -4.937755 REF 1 237725707 237725725 -1 0.794182092935398 ATGCCACTAGAGGGCAGTC ACGCCACTAGAGGGCAGTC 13.3109530173565 13.0878094660423 0.223143551314209 ATGCCACTAGAGGGCAGTC:4,ACGCCACTAGAGGGCAGTC:2 000011 47.003702594606 23.3802513268826 61.3803443615034 -26.188365 REF 2 3427846 3427864 1 0.0395919909331318 CCTCCACTAGGTGGCGCAT CCTCCGCTAGGTGGCGCAT 11.5194893108363 9.0709503052192 2.44853900561712 CCTCCACTAGGTGGCGCAT:5,CCTCCGCTAGGTGGCGCAT:1 000010 378.812188638128 430.359961383128 351.990668189513 NA REF 2 7184589 7184607 -1 0.11696259916887 GCACCACAAGAGGGAGCCA GCACCACAAGAGGGAGCGA 10.6269934514627 9.15108693165308 1.47590651980958 GCACCACAAGAGGGAGCCA:5,GCACCACAAGAGGGAGCGA:1 000100 360.123627537289 311.537957251734 229.734694809001 NA REF 2 17852497 17852515 -1 1 TAACCACTAGGTGTCACTA TAACCGCTAGGTGTCACTA 13.3461775548097 10.8976385491926 2.44853900561712 TAACCACTAGGTGTCACTA:5,TAACCGCTAGGTGTCACTA:1 000100 39.0855653187658 21.5317064768107 11.2948873951811 NA REF 2 20595941 20595959 1 0.418738194182093 AGCCCAGCAGGTGGCTCTC AGCCCAGCAGGTGGCTCTC 9.19991211585229 8.97107054342344 0.228841572428848 AGCCCAGCAGGTGGCTCCC:3,AGCCCAGCAGGTGGCTCTC:3 111000 68.996900161402 96.2451268511604 56.0703481845866 -12.92655 REF 2 38104813 38104831 -1 0 TTGACAGTAGATGGCGCTG TTGACAGTAGATGGCGCTG 12.5161477834493 12.9330415873811 -0.416893803931787 TTGACAGTAGATGGCGCTA:4,TTGACAGTAGATGGCGCTG:2 100111 53.9490672933702 74.5389371166494 63.4142566552721 NA REF 2 42316647 42316665 -1 0.343785417453721 CGCCCGCTAGGGGGCAGCA CGCCCGGTAGGGGGCAGCA 11.6299449124212 11.180419814519 0.449525097902193 CGCCCGCTAGGGGGCAGCA:5,CGCCCGGTAGGGGGCAGCA:1 000100 187.609812766495 157.945338517829 252.635121081897 NA REF 2 43419493 43419511 1 0.278050623347185 TCCCCTGTAGGAGGCAGCA TCCCCTGTAGGAGGCAGCA 8.73373437755116 8.28744727492274 0.446287102628419 CCCCCTGTAGGAGGCAGCA:3,TCCCCTGTAGGAGGCAGCA:3 001101 67.8804400545829 11.035977099323 83.8694367075426 56.84446 REF 2 65396612 65396630 -1 0.404986777483944 CAGCCAGAAGGGGGCGTGC TAGCCAGAAGGGGGCGTGC 9.80378776563108 10.2500748682595 -0.446287102628421 CAGCCAGAAGGGGGCGTGC:5,TAGCCAGAAGGGGGCGTGC:1 100000 45.0035457293063 46.792635175164 75.0942362199866 NA REF 2 69603067 69603085 1 0.11696259916887 TAAACACTAGAGGGCAGCA TAAACACTAGAGGGCAGCA 12.2312357631926 12.4600773356214 -0.228841572428848 TAAACACTAGAGGGCAGTA:5,TAAACACTAGAGGGCAGCA:1 011111 73.0651393023155 72.3870830509382 67.1815960580653 NA REF 2 71299198 71299216 1 0.0787306384586324 GGACCACCTGGGGGCGGTG GGACCACCTGGGGGCGTTG 11.067642592158 8.92757642866171 2.14006616349627 GGACCACCTGGGGGCGGTG:4,GGACCACCTGGGGGCGTTG:2 000110 44.7334621523459 53.2490735945392 73.3324250635175 NA REF 2 72343423 72343441 -1 0.138647525500567 TGGCCTGCAGGTGGCCCTG TGGCTTGCAGGTGGCCCTG 10.6782847281571 6.08316487802247 4.59511985013459 TGGCCTGCAGGTGGCCCTG:5,TGGCTTGCAGGTGGCCCTG:1 000100 23.618645253373 0 11.2948873951811 NA REF 2 73847253 73847271 1 0 TGGCCTCCAGGGGGCACTC TGGCCTCTAGGGGGCACTC 14.8662336089193 14.5996049456654 0.266628663253947 TGGCCTCCAGGGGGCACTC:5,TGGCCTCTAGGGGGCACTC:1 100000 46.9416640347056 0 11.2948873951811 NA REF 2 98391102 98391120 1 0.326256139025312 TGGCCACTGGGGGCCGCTG TGGCCACTGGGGGCCACTG 9.78585579928341 9.47407617525257 0.311779624030841 TGGCCACTGGGGGCCGCTG:4,TGGCCACTGGGGGCCACTG:2 101000 54.1065652540523 0 91.5479633856614 NA REF 2 100877359 100877377 -1 0.94030978466188 TGGCCACATGGGGTCACTG TGGCCACGTGGGGTCACTG 9.76175824770435 8.88628951035045 0.8754687373539 TGGCCACATGGGGTCACTG:4,TGGCCACGTGGGGTCACTG:2 010100 0 52.9212739539565 97.0587901372152 NA REF 2 103089566 103089584 1 0.852512278050623 TGCCCACTAGGTGTCAGCA TGCCCACCAGGTGTCAGCA 11.765146033268 12.0317746965219 -0.266628663253947 TGCCCACTAGGTGTCAGCA:4,TGCCCACCAGGTGTCAGCA:2 000011 200.662290348626 144.952381882254 156.403825667149 16.403505 REF 2 119250115 119250133 1 0.327993955421232 CTTCCACAAGGTGGTAGTT CTTCCACAAGGTGATAGTT 8.65901083135523 6.00811904409296 2.65089178726226 CTTCCACAAGGTGGTAGTT:5,CTTCCACAAGGTGATAGTT:1 000010 23.9004699005873 0 11.2948873951811 NA REF 2 120048628 120048646 -1 0.871099357763506 CAGCCACCAGGTGGCAGCA CAGCCACCAGGTGGTAGCA 15.3147889625064 12.8662499568892 2.44853900561713 CAGCCACCAGGTGGCAGCA:4,CAGCCACCAGGTGGTAGCA:2 000110 420.312462330738 222.692581654083 208.44540645599 NA ALT 2 122288656 122288674 1 0.819871552701171 AAACCAGTAGAGGGTGCAC GAACCAGTAGAGGGTGCAC 9.38616604106397 9.16302248974976 0.223143551314211 AAACCAGTAGAGGGTGCAC:5,GAACCAGTAGAGGGTGCAC:1 100000 69.9680248424974 38.768252321784 44.0172346836808 NA REF 2 133408857 133408875 1 0.0395919909331318 TGTCCACCAGAGGGCTCTA TGTCCACCAGAGGGCTCTA 13.0261435754083 9.01881039017587 4.00733318523247 TGTCCACCAGACGGCTCTA:4,TGTCCACCAGAGGGCTCTA:2 100111 52.4067083909156 0 11.2948873951811 NA REF 2 161851096 161851114 -1 0.445032111824707 TTGTCACTAGGGGGCAGCC TTGTCACTAGGGGGCAGCC 12.1167233764043 12.5606547653403 -0.44393138893596 TTGTCACTAGGGGGCACCC:4,TTGTCACTAGGGGGCAGCC:2 111100 147.357054947659 131.411208560435 109.299897335042 -30.08423 REF 2 182438058 182438076 1 1 TAACCACCAGGGGTCAGAG TAACCACCAGGGGTCAGAG 11.9291560213274 11.4796309234252 0.449525097902193 TAACCAGCAGGGGTCAGAG:3,TAACCACCAGGGGTCAGAG:3 110001 46.5024188306121 41.5046689917467 11.2948873951811 -4.99775 REF 2 189848337 189848355 1 0.0184359652436721 TGACCACTAGGCGGCAAAA TGACCACTAGGTGGCAAAA 10.0224524761775 13.6333703888217 -3.61091791264423 TGACCACTAGGCGGCAAAA:5,TGACCACTAGGTGGCAAAA:1 100000 42.5526309074272 0 11.2948873951811 NA REF 2 200604717 200604735 -1 0.94030978466188 TCGCCAGCAGGGGGCAGTG TTGCCAGCAGGGGGCAGTG 15.4021309726615 15.6252745239757 -0.223143551314209 TCGCCAGCAGGGGGCAGTG:4,TTGCCAGCAGGGGGCAGTG:2 010100 229.504380747463 190.055356685404 135.984518041447 NA REF 2 218899631 218899649 -1 0 TCGCCACCAGGGGGCACAG TCGCCACCAGGGGGCAGAG 15.0763471830429 14.632415794107 0.44393138893596 TCGCCACCAGGGGGCACAG:4,TCGCCACCAGGGGGCAGAG:2 100001 204.031718623355 205.141820009591 184.052477702874 NA ALT 2 228904656 228904674 1 0.437400831129581 CGTCCACTAGGGGGAAATC TGTCCACTAGGGGGAAATC 11.291790589617 11.7380776922454 -0.446287102628419 CGTCCACTAGGGGGAAATC:4,TGTCCACTAGGGGGAAATC:2 101000 97.0018765833954 78.7956158534501 76.569635558502 NA REF 2 236655148 236655166 -1 0.436720816018134 TGAACACTAGAGGGTGCAT TGAACACTAGAGGGTGCAT 8.47186963369833 10.9204086393155 -2.44853900561712 TGAACACTAGAGGGCGCAT:4,TGAACACTAGAGGGTGCAT:2 101101 129.4392865325 176.227915063447 100.875124372632 NA REF 2 236675029 236675047 1 0.430071779372875 CCGCCACTAGGGGGCATTG CCACCACTAGGGGGCATTG 12.9986741411851 12.5408410475596 0.457833093625478 CCGCCACTAGGGGGCATTG:4,CCACCACTAGGGGGCATTG:2 001100 191.490626641146 171.358487498453 144.166422072858 -3.52996499999998 REF 2 241673433 241673451 -1 0.0345296562145825 TGTCCAGCAGGAGGCTCCC TGCCCAGCAGGAGGCTCCC 9.85996230110948 8.76135001244137 1.09861228866811 TGTCCAGCAGGAGGCTCCC:5,TGCCCAGCAGGAGGCTCCC:1 000010 43.9223037233898 48.7048548986745 69.6756507593087 NA REF 3 27722856 27722874 -1 0.661428031734038 TGCCCACTAGAGGGCAGGC TGCCCACTAGGGGGCAGGC 11.744190668092 12.2604071404929 -0.516216472400867 TGCCCACTAGAGGGCAGGC:5,TGCCCACTAGGGGGCAGGC:1 000100 75.5902343441442 41.7355478854658 77.7945871433004 NA REF 3 42141462 42141480 -1 0.94030978466188 GGCCCACTAGATGGTGCTG GGCCCACTAGATGGTGCTG 9.89867758777602 10.4148940601769 -0.516216472400867 GGCCCACTAGGTGGTGCTG:5,GGCCCACTAGATGGTGCTG:1 111110 283.688504574639 347.733744536408 300.976696035609 NA REF 3 45698444 45698462 -1 0.769097091046468 CCGCCACTAGGTGGTGCCA CCACCACTAGGTGGTGCCA 13.2375492709457 12.7797161773202 0.45783309362548 CCGCCACTAGGTGGTGCCA:3,CCACCACTAGGTGGTGCCA:3 011010 268.079441191393 274.843583631552 231.322827509747 NA REF 3 46890127 46890145 1 0.761390253116736 AGTCCAACAGGGGGCAGCG AGTCCAACAGGGGGCAGCA 11.1895316067963 11.6064254107281 -0.416893803931787 AGTCCAACAGGGGGCAGCG:5,AGTCCAACAGGGGGCAGCA:1 000100 99.0696621406967 127.245745844265 114.715317645821 NA REF 3 108125608 108125626 -1 0.458859085757461 GTACCACTAGATGGCAACA GTACCACTAGATAGCAACA 11.4640409404841 6.87907346181349 4.58496747867057 GTACCACTAGATGGCAACA:5,GTACCACTAGATAGCAACA:1 000100 149.598787045877 89.2891449712029 136.181564877169 NA REF 3 115538773 115538791 -1 0.145296562145825 TTACCACAAGATGGCAACA TTACCACAAGATGGCAGCA 12.1980101155643 13.5271460628442 -1.32913594727994 TTACCACAAGATGGCAACA:5,TTACCACAAGATGGCAGCA:1 000100 263.891407495659 262.519574747407 185.000542919392 NA REF 3 133540906 133540924 -1 0.458859085757461 GGGCCACAAAAGGGCACCA GGGCCACAAAAGGGCACCA 9.20855472032731 13.8036745704619 -4.59511985013459 GGGCCACAAGAGGGCACCA:4,GGGCCACAAAAGGGCACCA:2 011101 46.0200351149275 70.1462200171898 11.2948873951811 NA REF 3 136751447 136751465 1 0.126407253494522 ACGCCACTAGGTGACAATG ACGCCACTAGGTGTCAATG 9.5991464877452 9.88682856019699 -0.287682072451783 ACGCCACTAGGTGACAATG:3,ACGCCACTAGGTGTCAATG:3 011010 496.464009102224 512.508036971562 402.233186861295 NA REF 3 137787597 137787615 1 0.857650170003778 CTGCCACCAGAGGTCGCCG CTGCCACCAGAGGTCGCCG 13.2759557725761 13.6928495765079 -0.416893803931787 CTGCCACCAGAGGTCGCCA:5,CTGCCACCAGAGGTCGCCG:1 111011 556.045518210484 519.18158337788 501.883769421946 NA REF 3 139239093 139239111 -1 0.0787306384586324 CCAACAGCAGGGGGCAGTA CCAACAGCAGGGGACAGTA 12.2293272350892 9.57843544782698 2.65089178726226 CCAACAGCAGGGGGCAGTA:5,CCAACAGCAGGGGACAGTA:1 000010 114.370784915427 92.1801964728805 56.491740635187 NA REF 3 143494394 143494412 1 1 TTCCCACCAGAGGGCATAA TTCCCACCAGAGGGCACAA 10.3337881277793 12.9177856802115 -2.58399755243223 TTCCCACCAGAGGGCATAA:5,TTCCCACCAGAGGGCACAA:1 010000 52.2691449117256 48.8534012145248 56.824441585352 NA REF 3 150439265 150439283 1 0.797431054023423 CGAACACTAGAGGGAAGCA TGAACACTAGAGGGAAGCA 10.7046855105642 11.1509726131927 -0.446287102628419 CGAACACTAGAGGGAAGCA:5,TGAACACTAGAGGGAAGCA:1 001000 55.8731650134575 79.3487019883816 76.78207607361 NA REF 3 171547902 171547920 -1 0.505477899508878 CTGCCTCCAGGTGGCCCTG CTGCCTCCAGGTGGCCTTG 9.87059250721451 7.28659495478227 2.58399755243223 CTGCCTCCAGGTGGCCCTG:4,CTGCCTCCAGGTGGCCTTG:2 100001 190.359422153844 136.080261155112 217.113010284884 NA REF 3 178787126 178787144 1 0.0395919909331318 TCCCCCCCAGATGGCGCCG TCCCCTCCAGATGGCGCCG 8.78906222576358 11.0916473187576 -2.30258509299405 TCCCCCCCAGATGGCGCCG:5,TCCCCTCCAGATGGCGCCG:1 000100 23.8852918341224 41.1143938011962 47.0975364547358 NA REF 4 3882501 3882519 -1 0 TGGACAGCAGGTGGCAGCA TGGTCAGCAGGTGGCAGCA 13.5422643538566 13.1367992457484 0.405465108108164 TGGACAGCAGGTGGCAGCA:5,TGGTCAGCAGGTGGCAGCA:1 001000 117.463758576614 121.168480764132 119.312600367941 NA REF 4 4184781 4184799 -1 0 CAACCAGCAGGGGGCGCCA CAACCAGCAGGGGGCGGCA 15.5595570565337 15.1156256675978 0.44393138893596 CAACCAGCAGGGGGCGCCA:4,CAACCAGCAGGGGGCGGCA:2 100010 186.941216138683 147.826334825818 169.67684375471 NA REF 4 20396982 20397000 1 0.340460899131092 GTACCTGCAGGGGGCAGAG TTACCTGCAGGGGGCAGAG 10.0237556284668 11.8563370922151 -1.83258146374831 GTACCTGCAGGGGGCAGAG:5,TTACCTGCAGGGGGCAGAG:1 000001 107.752734071106 130.635487743084 106.181056470211 NA REF 4 27320564 27320582 -1 0 TAGCCACACGGTGTCGCTA TAGCCACACGGTGTAGCTA 8.48457849064464 6.48802460877057 1.99655388187407 TAGCCACACGGTGTCGCTA:5,TAGCCACACGGTGTAGCTA:1 010000 0 81.3830012240073 100.726479209146 NA REF 4 44929574 44929592 1 0.470041556479033 TGTCCACCTGGTGGCACTA TGTCCACCTGGTGGCACTA 12.326917348772 11.2283050601039 1.09861228866811 TGCCCACCTGGTGGCACTA:3,TGTCCACCTGGTGGCACTA:3 001101 45.5740107131618 43.8531646270867 11.2948873951811 1.72085 REF 4 57167828 57167846 -1 0.481979599546657 CAGGCACTAGAGGGCAGCC CAGGCACTAGAGGGCAGCC 10.3557121051573 9.02657615787732 1.32913594727994 CAGGCACTAGAGGGCAACC:4,CAGGCACTAGAGGGCAGCC:2 111010 190.350581084115 221.652545334647 173.12305498501 NA REF 4 70183815 70183833 1 0 ATGACAGCAGAGGGAGCAA ATGACAGCAGAGGGAGCCA 8.77085345245839 9.76125215648627 -0.990398704027877 ATGACAGCAGAGGGAGCAA:5,ATGACAGCAGAGGGAGCCA:1 100000 85.5218444694919 75.1679152806953 69.9680248424974 NA REF 4 71371044 71371062 -1 0.0787306384586324 CCACCACCAGAGGGTGCCT CCGCCACCAGAGGGTGCCT 10.9341134760713 11.3919465696968 -0.45783309362548 CCACCACCAGAGGGTGCCT:5,CCGCCACCAGAGGGTGCCT:1 000001 387.861788308633 314.054626986948 302.611231556203 NA REF 4 77654811 77654829 -1 0.661428031734038 GGACCACTAGATGCCACTG GGACCACTAGATGCCACCG 9.41733500492303 9.18849343249418 0.228841572428848 GGACCACTAGATGCCACTG:4,GGACCACTAGATGCCACCG:2 100100 44.5130172617235 21.0462596193763 11.2948873951811 NA REF 4 78161826 78161844 1 0 TGGCCAGGAGAGGGCAGTA TGGCCAGGAGAGGGCAGTA 14.096172382447 13.8673308100182 0.228841572428848 TGGCCAGGAGAGGGCAGCA:4,TGGCCAGGAGAGGGCAGTA:2 011110 219.069872743459 298.495021041336 229.476028281142 NA REF 4 84566016 84566034 1 0.761390253116736 TTGCCAGTAGGGGGTGCTG TTGCCAGTAGGTGGTGCTG 13.6658178680714 13.2694025954832 0.396415272588246 TTGCCAGTAGGGGGTGCTG:4,TTGCCAGTAGGTGGTGCTG:2 000110 125.54893549424 135.021312265678 111.743197571141 NA ALT 4 85892675 85892693 -1 0.496411031356252 TAGTCAGCAGATGGCAGTG TACTCAGCAGATGGCAGTG 11.5162398099705 9.23385742429394 2.28238238567653 TAGTCAGCAGATGGCAGTG:4,TACTCAGCAGATGGCAGTG:2 000011 25.3783311250837 0 11.2948873951811 1.394275 REF 4 86048923 86048941 1 0.0395919909331318 CTGCCACCAGGTGGCTGCT CTGCCACCAGGGGGCTGCT 10.4072944273296 10.8037096999179 -0.396415272588246 CTGCCACCAGGTGGCTGCT:4,CTGCCACCAGGGGGCTGCT:2 010100 123.783554807234 113.353485433321 136.227945714453 NA REF 4 96126206 96126224 -1 0.145296562145825 TCACCACTAGGGGATACCG TCACCACTAGGGGATACCG 10.242853337312 10.6597471412438 -0.416893803931787 TCACCACTAGGGGATACCA:5,TCACCACTAGGGGATACCG:1 110111 0 0 55.8409853270991 NA REF 4 123835653 123835671 -1 0.950056667925954 TGACCAGCAGAGGTCGCTC TGACCAGCAGAGGTCTCTC 13.4830929158895 10.1508884057143 3.3322045101752 TGACCAGCAGAGGTCGCTC:3,TGACCAGCAGAGGTCTCTC:3 001110 62.0030135141638 0 50.582357209267 62.00301 ALT 4 128886743 128886761 -1 0.0184359652436721 TGGCCGCCAGGTGGAAGCC TGGCCGCCAGGTGGAACCC 11.4438165491535 11.8877479380894 -0.44393138893596 TGGCCGCCAGGTGGAAGCC:5,TGGCCGCCAGGTGGAACCC:1 000001 63.5924811271837 41.0548972966898 107.541223392924 NA REF 4 132351643 132351661 -1 0 TGGTCAGAAGGTGGAGCTG TGGTCAAAAGGTGGAGCTG 10.3426631934162 8.11803964189182 2.22462355152433 TGGTCAGAAGGTGGAGCTG:5,TGGTCAAAAGGTGGAGCTG:1 000100 0 0 88.6727247855694 NA REF 4 143761868 143761886 -1 1 TTAGCACTAGGTGGCAGTG TTAGCACTAGGTGGCAGTG 11.169732958492 11.5866267624238 -0.416893803931787 TTAGCACTAGGTGGCAGTA:3,TTAGCACTAGGTGGCAGTG:3 101010 25.0459300284331 22.773968344615 11.2948873951811 NA REF 4 144480231 144480249 1 0.103135625236116 CATCCGCGAGATGGCAGTG TATCCGCGAGATGGCAGTG 8.73750146670105 9.18378856932947 -0.446287102628419 CATCCGCGAGATGGCAGTG:5,TATCCGCGAGATGGCAGTG:1 000001 172.059608653398 167.087017108394 113.474708857705 NA REF 4 183727677 183727695 -1 0.971666037023045 GCGTCACTAGGGGGCGCCG GCGTCACTAGGGGGCGCCA 11.1882729307411 11.6051667346729 -0.416893803931787 GCGTCACTAGGGGGCGCCG:5,GCGTCACTAGGGGGCGCCA:1 010000 206.250674356716 181.567977397758 294.108399768637 NA REF 4 185021624 185021642 -1 0.790782017378164 ATGTCACTAGGTGGCGCTG ATGTCACTAGGTGGCTCTG 11.4669863332101 8.1347818230349 3.3322045101752 ATGTCACTAGGTGGCGCTG:5,ATGTCACTAGGTGGCTCTG:1 010000 120.419255203404 287.458184674591 259.42550442306 NA REF 5 17203629 17203647 -1 0.82523611635814 TAACCACAAGGTGGCAGGC TAACCGCAAGGTGGCAGGC 11.6736381394134 9.22509913379627 2.44853900561712 TAACCACAAGGTGGCAGGC:5,TAACCGCAAGGTGGCAGGC:1 000010 77.4291794650048 114.289480348943 86.7537916483163 NA REF 5 18466383 18466401 1 0.775292784284095 CTGCCAGCAGAGGGCAGTA CTGCCAGCAGAGGACAGTA 15.0796647528782 12.428772965616 2.65089178726226 CTGCCAGCAGAGGGCAGTA:4,CTGCCAGCAGAGGACAGTA:2 001010 89.6751104462885 38.8019809274419 42.0008583913871 NA REF 5 36507619 36507637 -1 0.391839818662637 TCACCACCAGGTGGCGCCC TCACCACCAGATGGCGCCC 15.1527135884554 14.6364971160546 0.516216472400867 TCACCACCAGGTGGCGCCC:5,TCACCACCAGATGGCGCCC:1 000100 227.361656479645 181.977878870817 174.752153539283 NA REF 5 73944798 73944816 -1 0.533811862485833 TAGCCAGAAGAGGGCACTA TAACCAGAAGAGGGCACTA 14.4992817768627 14.0414486832372 0.457833093625482 TAGCCAGAAGAGGGCACTA:5,TAACCAGAAGAGGGCACTA:1 010000 64.3226346000366 86.3865148732087 90.7125898732476 NA REF 5 94304384 94304402 1 0.686437476388364 AAACCACAAGATGGCAATA AAACCACAAGATGGCAATA 10.7120532599012 10.5942702242448 0.117783035656384 ACACCACAAGATGGCAATA:4,AAACCACAAGATGGCAATA:2 111100 92.4305082561642 78.6918932729536 57.4221644295026 -28.13904 REF 5 102307590 102307608 -1 0.872383830751794 AGACCACTAGATGGCTATC AGACCACTAGATGGCTGTC 8.91807403393481 10.2472099812148 -1.32913594727994 AGACCACTAGATGGCTATC:5,AGACCACTAGATGGCTGTC:1 000100 21.1551249416257 38.8802219380496 11.2948873951811 NA REF 5 112379434 112379452 1 0.472912731394031 TGGGCACCGGGTGGCGCCC TGGGCACCGGGTGGCGCCC 9.71412568365984 8.10468777122574 1.6094379124341 AGGGCACCGGGTGGCGCCC:4,TGGGCACCGGGTGGCGCCC:2 101110 25.2297358898531 0 11.2948873951811 NA REF 5 119991711 119991729 1 0.403853418964866 TTGCCACCAGGTGGTGCCA TTGCCACCTGGTGGTGCCA 14.1736085881423 10.334156275549 3.83945231259331 TTGCCACCAGGTGGTGCCA:4,TTGCCACCTGGTGGTGCCA:2 000011 93.4911824896116 86.3621879831114 11.2948873951811 78.631795 REF 5 132623384 132623402 -1 0.427276161692482 CGGGCAGCAGGAGGCAGTG CGGGCAGCAGGAGGCAGTG 9.99015428764095 12.2057280036454 -2.21557371600441 CGGGCAGCAGGGGGCAGTG:4,CGGGCAGCAGGAGGCAGTG:2 011011 46.4502120496767 52.8556569240649 99.7321735556713 NA REF 5 134540200 134540218 -1 0.343785417453721 CTTCCACCAGGGGGCATTT CTTCCACCAGGGGGAATTT 10.7291398979864 8.73258601611232 1.99655388187407 CTTCCACCAGGGGGCATTT:4,CTTCCACCAGGGGGAATTT:2 110000 0 0 39.8477622451128 19.92388 REF 5 145826632 145826650 1 1 TTACCGCGAGAGGGCGCCG TTACCGCGAGAGGGAGCCG 10.9383708014964 8.94181691962237 1.99655388187407 TTACCGCGAGAGGGCGCCG:4,TTACCGCGAGAGGGAGCCG:2 010010 149.862641378704 177.809607071823 167.328434832249 NA REF 5 159626515 159626533 1 0.794182092935398 CGGCCACCAGAGGGCGCGC CAGCCACCAGAGGGCGCGC 14.6026256273608 13.6863348954867 0.916290731874152 CGGCCACCAGAGGGCGCGC:5,CAGCCACCAGAGGGCGCGC:1 100000 194.71941424292 210.619973360275 268.903576975345 NA REF 5 169527540 169527558 1 1 CGGCCGCCAGAGGGGGGTA TGGCCGCCAGAGGGGGGTA 9.80891153073802 10.2551986333664 -0.446287102628419 CGGCCGCCAGAGGGGGGTA:5,TGGCCGCCAGAGGGGGGTA:1 000100 87.6838960378789 78.3833305438105 88.927171526193 NA REF 5 172721111 172721129 1 0.600982244049868 TGGCCGCCAGGTGGCGATG CGGCCGCCAGGTGGCGATG 13.0234192366398 12.5771321340113 0.446287102628421 TGGCCGCCAGGTGGCGATG:5,CGGCCGCCAGGTGGCGATG:1 001000 169.52900317955 177.058923470318 183.282819678629 NA REF 5 179297718 179297736 1 0.145296562145825 CAGCCTGCAGGGGGCAGAG CAGCCTGCAGGGGGCCGAG 11.7625225675544 8.04895050085005 3.71357206670431 CAGCCTGCAGGGGGCAGAG:5,CAGCCTGCAGGGGGCCGAG:1 010000 48.5247229812131 0 78.9626227702755 NA REF 6 797682 797700 1 0.747487721949377 CTGCCAGCAGGGGTCACAA CTGCCAGCAGGGGTCAGAA 12.4573626229478 12.0134312340119 0.44393138893596 CTGCCAGCAGGGGTCACAA:5,CTGCCAGCAGGGGTCAGAA:1 010000 124.858635632982 92.0115148831995 78.8877306699755 NA REF 6 13455143 13455161 -1 0.0787306384586324 CAGCCAGGAGGTGATGCTA CAGCCAGGAGGTGACGCTA 8.50967596784447 10.9582149734616 -2.44853900561712 CAGCCAGGAGGTGATGCTA:3,CAGCCAGGAGGTGACGCTA:3 100011 25.6351556819884 0 11.2948873951811 -11.29489 ALT 6 29670462 29670480 1 0.0345296562145825 TGGCCACACGGGGGCGCCG TGGCCACACGGGGGCGTCG 11.5147588335569 8.93076128112465 2.58399755243223 TGGCCACACGGGGGCGCCG:3,TGGCCACACGGGGGCGTCG:3 100011 202.544157014068 316.908868816489 112.118759741772 204.79011 ALT 6 31334841 31334859 -1 0.0184359652436721 CGACCACCAGGTGGCGCTG CGACCACAAGGTGGCGCTG 16.3409053822189 14.9756644302968 1.36524095192206 CGACCACCAGGTGGCGCTG:3,CGACCACAAGGTGGCGCTG:3 011010 362.562523459562 337.614399727673 356.038843319852 NA REF 6 32383393 32383411 1 0.509633547412165 TGGCCAGTAGATGACAGGT TGGCCAGTAGATGACAGTT 9.32576809168988 11.0305161839283 -1.70474809223843 TGGCCAGTAGATGACAGGT:5,TGGCCAGTAGATGACAGTT:1 100000 468.224618197902 496.464009102224 407.997214462777 NA REF 6 32590400 32590418 1 0.0184359652436721 CCTCCAGCAGGGGGCTCTT CCTCCAGCAGGAGGCTCTT 9.62004391505785 7.40447019905344 2.21557371600441 CCTCCAGCAGGGGGCTCTT:5,CCTCCAGCAGGAGGCTCTT:1 100000 0 170.228642636769 141.068442726518 NA REF 6 32659991 32660009 -1 0 TGGACTGTAGAGGGCGTTG TGGACTGTAGAGGGCATTG 9.04763165814326 8.73585203411242 0.311779624030841 TGGACTGTAGAGGGCGTTG:3,TGGACTGTAGAGGGCATTG:3 010011 122.469386163076 185.693580655507 66.6330454498032 119.06053 ALT 6 33050665 33050683 -1 0.0184359652436721 TGACCTCCAGGGTGCGCTG TGACCTCCAGGGGGCGCTG 10.5067762170866 15.0917436957572 -4.58496747867057 TGACCTCCAGGGTGCGCTG:5,TGACCTCCAGGGGGCGCTG:1 000001 159.232584187396 101.620346325188 155.632093223321 NA ALT 6 39315785 39315803 1 0.119758216849263 TAGCCACCAGGTGGCAGGC TAGCCACAAGGTGGCAGGC 13.4967121849609 12.1314712330389 1.36524095192206 TAGCCACCAGGTGGCAGGC:5,TAGCCACAAGGTGGCAGGC:1 001000 268.690547789624 300.409472740007 234.655071749473 NA ALT 6 53593563 53593581 -1 0.38058179070646 CCACCGCTAGAGGGCAGAG CCACCGCTAGAGAGCAGAG 10.4969114565811 5.91194397791057 4.58496747867057 CCACCGCTAGAGGGCAGAG:4,CCACCGCTAGAGAGCAGAG:2 010010 244.533443611108 251.146385973948 204.05500457004 NA REF 6 53821066 53821084 -1 0.430525122780506 TAGCCACTGGGGGGAGCTG TAGCCACTCGGGGGAGCTG 11.3156624420255 9.92936808090561 1.38629436111989 TAGCCACTGGGGGGAGCTG:4,TAGCCACTCGGGGGAGCTG:2 001010 206.325196866472 58.2531880401058 140.019159581885 NA REF 6 87987042 87987060 1 0.661428031734038 AGGCCACAAGATGGCAAAC AGGCCACAAGATGGCAAAT 10.0784794485798 8.87450664425389 1.20397280432594 AGGCCACAAGATGGCAAAC:5,AGGCCACAAGATGGCAAAT:1 100000 0 11.0506848002496 11.2948873951811 NA REF 6 105131100 105131118 1 0.533811862485833 TCACCAGCAGAGGGCGCCA TTACCAGCAGAGGGCGCCA 15.3718446511049 15.5949882024191 -0.223143551314209 TCACCAGCAGAGGGCGCCA:5,TTACCAGCAGAGGGCGCCA:1 100000 202.682215931136 226.962069894522 224.934378134471 NA REF 6 106892974 106892992 1 0.721571590479788 CAACCACTAGATGGCAGAG CAACCACTAGATGGCAGGG 12.6668182252664 12.1813104094847 0.4855078157817 CAACCACTAGATGGCAGAG:4,CAACCACTAGATGGCAGGG:2 000101 109.327747226523 95.2036841794731 139.904234873867 NA REF 6 114417912 114417930 1 0.936154136758594 GTGCCACTAGGGGGCTCTC GTGCCACTAGGGGGCTCTC 11.0275324412348 14.35973695141 -3.3322045101752 GTGCCACTAGGGGGCGCTC:4,GTGCCACTAGGGGGCTCTC:2 111010 49.5578444147794 49.3331946343007 60.6634225669807 NA REF 6 116433265 116433283 1 0.11696259916887 CGCCCACTAGAGAGCGCCA CGCCCACTAGAGAGCGCCA 9.73301097993365 10.1792980825621 -0.446287102628419 TGCCCACTAGAGAGCGCCA:4,CGCCCACTAGAGAGCGCCA:2 100111 145.054461618276 137.266803245393 147.147220089993 NA REF 6 135203769 135203787 -1 0 ATCCCAGCAGGTGACGCTG ATCCCAGCGGGTGACGCTG 9.44185817898139 6.29555304694802 3.14630513203337 ATCCCAGCAGGTGACGCTG:5,ATCCCAGCGGGTGACGCTG:1 001000 287.022784530129 155.602891900424 262.928406918603 NA REF 6 135857239 135857257 1 1 ATCCCACAAGAGGTCGCTA AACCCACAAGAGGTCGCTA 9.11091700153247 9.00555648587464 0.105360515657825 ATCCCACAAGAGGTCGCTA:5,AACCCACAAGAGGTCGCTA:1 000001 88.7711402083468 75.3452755924429 54.0053748045479 NA REF 6 137982943 137982961 1 0.551190026445032 TAGCCACTAGGTGGAGCCG TAGCCACTAGGTGGAGCCG 13.8367107290418 14.7530014609159 -0.916290731874154 TGGCCACTAGGTGGAGCCG:4,TAGCCACTAGGTGGAGCCG:2 110110 148.962612484779 100.436396242698 53.4354850530396 NA REF 6 138266237 138266255 -1 0.781790706460143 ATTCCAGCAGGTGGAGCTA ATTCCAGCAGGTGGAGCTA 11.6117021769695 11.3450735137155 0.266628663253949 ATTCCAGTAGGTGGAGCTA:5,ATTCCAGCAGGTGGAGCTA:1 011111 148.497077021949 161.714178274671 131.487001489116 NA REF 6 148786061 148786079 -1 0.815715904797884 ATGCCAGCAGATGGCACTG ATGCCAGCAGATGGCACCG 13.5471362554885 13.3182946830596 0.228841572428848 ATGCCAGCAGATGGCACTG:5,ATGCCAGCAGATGGCACCG:1 100000 136.421650112199 186.809113339373 128.506168746344 NA REF 6 149753304 149753322 -1 1 CAACCATTAGGTGGCGCCG CAACCATTAGGTGGCGCCG 10.8687014041155 11.2855952080473 -0.416893803931787 CAACCATTAGGTGGCGCCA:4,CAACCATTAGGTGGCGCCG:2 101101 252.816773847874 303.411827592897 271.227768819997 NA REF 6 161188595 161188613 -1 0.0582546278806196 AAGCCGGCAGGGGGCGGCA AAGCCGGCAGGGGGCGGCA 11.9617689458004 11.7386253944862 0.223143551314209 GAGCCGGCAGGGGGCGGCA:4,AAGCCGGCAGGGGGCGGCA:2 111100 261.425745130797 248.807738863385 142.91419151995 -112.202555 REF 7 1209684 1209702 -1 0.0395919909331318 CTGCCGCCAGGGGGAGCTG CTGCCGCCAGGGGGTGCTG 11.9391306447251 11.487145520982 0.451985123743057 CTGCCGCCAGGGGGAGCTG:4,CTGCCGCCAGGGGGTGCTG:2 110000 199.305590622353 339.584571914462 304.35182042586 122.662605 ALT 7 1852166 1852184 1 0.0582546278806196 GCCCCGGCAGGTGGCACTG ACCCCGGCAGGTGGCACTG 8.88614423396726 9.10928778528147 -0.223143551314209 GCCCCGGCAGGTGGCACTG:4,ACCCCGGCAGGTGGCACTG:2 010001 52.4899336059234 61.165418357757 65.8575932346097 NA REF 7 8317200 8317218 1 0.343785417453721 TTTCCATCAGGTGGCAGTA TTTCCATCAGGTTGCAGTA 10.8510650456666 6.26609756699604 4.58496747867057 TTTCCATCAGGTGGCAGTA:5,TTTCCATCAGGTTGCAGTA:1 000001 0 24.9879009808226 11.2948873951811 NA REF 7 22134366 22134384 1 0.145296562145825 TGGCCAGCAGGAGACAAAG TGGCCAGCAGGAGACAAAG 9.0213630131887 10.8405214566049 -1.81915844341617 TGGCCAGCAGGTGACAAAG:5,TGGCCAGCAGGAGACAAAG:1 110111 0 23.0022084769577 11.2948873951811 NA REF 7 25935144 25935162 -1 0.661428031734038 GGGCCAGCAGGGGGCGAGT AGGCCAGCAGGGGGCGAGT 10.3059825001978 10.529126051512 -0.223143551314209 GGGCCAGCAGGGGGCGAGT:5,AGGCCAGCAGGGGGCGAGT:1 001000 147.735185561382 150.559763357381 174.613792650408 NA REF 7 26416801 26416819 1 0.345976577257272 AGGACAGAAGGGGGCGCTG AGGACAGAAGGGGGCGCTG 11.5316595435525 9.31608582754812 2.21557371600442 AGGACAGAAGGAGGCGCTG:4,AGGACAGAAGGGGGCGCTG:2 101110 335.613717789115 328.864771592036 408.659614024605 NA REF 7 26721610 26721628 1 1 GAGCCACTAGATGGCGTAA GAGTCACTAGATGGCGTAA 10.3269642222383 7.23592176888003 3.09104245335832 GAGCCACTAGATGGCGTAA:4,GAGTCACTAGATGGCGTAA:2 101000 86.1135534284437 99.8457359810278 68.2972928519882 NA ALT 7 31174255 31174273 1 0.815715904797884 CGGCCACTAGATGGCACTA TGGCCACTAGATGGCACTA 16.1210075200905 16.5672946227189 -0.446287102628418 CGGCCACTAGATGGCACTA:5,TGGCCACTAGATGGCACTA:1 010000 104.383210234227 118.942168286543 104.150478253106 NA REF 7 33756394 33756412 1 1 CAGCCAGTAGAGGGCAACA CATCCAGTAGAGGGCAACA 13.1496980542577 11.9659279572492 1.18377009700842 CAGCCAGTAGAGGGCAACA:5,CATCCAGTAGAGGGCAACA:1 001000 39.0435580769232 22.9443779726888 41.4966631080086 NA REF 7 38451223 38451241 -1 0 TCCCCTACAGGTGGCAGTG TCCCCTGCAGGTGGCAGTG 8.40684570119401 10.6314692527183 -2.22462355152433 TCCCCTACAGGTGGCAGTG:5,TCCCCTGCAGGTGGCAGTG:1 100000 69.20774509049 48.3706950752938 11.2948873951811 NA REF 7 48464558 48464576 1 0.271401586701927 TTGCCACTTGATGGCACGC TTGCCACTTGATGGCATGC 9.42370664130659 6.83970908887436 2.58399755243223 TTGCCACTTGATGGCACGC:5,TTGCCACTTGATGGCATGC:1 000001 69.9543568246636 48.7491756671476 91.5804971684431 NA REF 7 62476199 62476217 -1 0.0184359652436721 CGGCCACAAGAGGGAGATG CGGCCACAAGAGGGGGATG 11.5440751060197 9.14617983322136 2.39789527279837 CGGCCACAAGAGGGAGATG:3,CGGCCACAAGAGGGGGATG:3 100101 209.401097240606 193.901187202246 197.051559952119 NA REF 7 70294309 70294327 1 0.979523989421987 TGGACACCAGAGGGAGCCA TGGACACCAGAGGGCGCCA 12.6311453830389 14.627699264913 -1.99655388187407 TGGACACCAGAGGGAGCCA:5,TGGACACCAGAGGGCGCCA:1 000100 338.135395000594 242.01457965803 303.285660843295 NA REF 7 73831891 73831909 1 0.727691726482811 TTACCAGCAGGTGTCACCC TTACCAGCAGGTGTCACCC 12.2513427030261 12.0281991517119 0.223143551314209 TCACCAGCAGGTGTCACCC:5,TTACCAGCAGGTGTCACCC:1 101111 467.935566252528 536.762007847106 527.050877159224 NA REF 7 77669684 77669702 -1 0.145296562145825 GGGCCGCCAGGGGGCGCCC GGGCCGTCAGGGGGCGCCC 12.7599152528343 8.69947224228786 4.06044301054642 GGGCCGCCAGGGGGCGCCC:4,GGGCCGTCAGGGGGCGCCC:2 010100 123.934134062828 220.594448953433 308.176381212103 NA REF 7 97798105 97798123 -1 0.613146958821307 AGGACACTAGATGGCAGCA AGGACATTAGATGGCAGCA 11.5995064036699 7.53906339312345 4.06044301054642 AGGACACTAGATGGCAGCA:4,AGGACATTAGATGGCAGCA:2 000101 106.570097910183 68.1089725081332 83.3484768110599 NA REF 7 99728772 99728790 -1 0 CCTGCAGAAGGGGGCGCCA ACTGCAGAAGGGGGCGCCA 9.56640643165409 8.40325562184841 1.16315080980568 CCTGCAGAAGGGGGCGCCA:5,ACTGCAGAAGGGGGCGCCA:1 000010 234.54132822045 221.714483620494 254.280259112399 NA REF 7 101054669 101054687 -1 0.51681148469966 CTACCACCAGAGGGCGCGC CTACCACCAGAGGGCGCCC 13.333862317519 14.8097688373286 -1.47590651980958 CTACCACCAGAGGGCGCGC:5,CTACCACCAGAGGGCGCCC:1 000100 169.918800823893 266.31456994448 248.647876373738 NA REF 7 102107688 102107706 1 0.38927087268606 CTTCCAGCAGGTGGCGGGA CTTCCAGCAGGTGGCGGGA 12.6227273874748 8.02760753734025 4.59511985013459 CTTCCAGCACGTGGCGGGA:5,CTTCCAGCAGGTGGCGGGA:1 110111 0 58.9876970726597 11.2948873951811 NA REF 7 107519995 107520013 -1 0.326256139025312 TGCCCAGAAGAGGGCAACG TGCCCAGAAGAGGGCAATG 10.7143874104838 10.9432289829127 -0.228841572428848 TGCCCAGAAGAGGGCAACG:4,TGCCCAGAAGAGGGCAATG:2 101000 96.5128828197253 129.598199666701 83.0182107167298 NA REF 7 128101605 128101623 -1 0 GGTCCACTAGGTGGCACTA GGTCCACTAGGTGGTACTA 14.0671595343631 11.6186205287459 2.44853900561712 GGTCCACTAGGTGGCACTA:4,GGTCCACTAGGTGGTACTA:2 001001 66.4313033875525 20.6714206161891 39.4334825231665 NA REF 7 129650862 129650880 -1 1 CGGCCACTAGATGTCCCCC CGGCCACTAGATGTCCCCC 9.0269268057826 9.47321390841102 -0.446287102628418 TGGCCACTAGATGTCCCCC:4,CGGCCACTAGATGTCCCCC:2 110101 301.781223669615 379.056619838804 290.064638040603 NA REF 7 134043171 134043189 -1 0.0582546278806196 TTGCCACCAGGTGGTGGTG TTGCCACCAGGTGGTGGCG 13.5416249677034 13.3127833952745 0.228841572428848 TTGCCACCAGGTGGTGGTG:5,TTGCCACCAGGTGGTGGCG:1 010000 146.264339225606 144.47647939239 151.136800155897 NA ALT 7 142023638 142023656 1 0.119758216849263 TGGCCACTTGGGGGCGCTG TGGCCACTTGGGGGCGCCG 13.5353598752138 13.3065183027849 0.228841572428848 TGGCCACTTGGGGGCGCTG:4,TGGCCACTTGGGGGCGCCG:2 000101 94.0119841004335 85.270819623785 74.9501075468941 NA REF 8 3142279 3142297 1 0.661428031734038 GCCCCGCTAGGTGGCAGCA GCCCCACTAGGTGGCAGCA 8.81316151118249 11.2617005167996 -2.44853900561713 GCCCCGCTAGGTGGCAGCA:4,GCCCCACTAGGTGGCAGCA:2 100010 161.107784301095 219.918709318596 177.098734146914 NA REF 8 6188966 6188984 -1 0.293842085379675 GAGCCAGCAGAGGGGGCTG GAGCCAGCAGAAGGGGCTG 9.53237793046308 7.31680421445866 2.21557371600442 GAGCCAGCAGAGGGGGCTG:5,GAGCCAGCAGAAGGGGCTG:1 010000 49.3029704147244 111.574414363437 101.175056326057 NA REF 8 27713170 27713188 1 0.645561012466944 CTGCCACTAGGTGGTGGTG CTGCCACTAGGTGGTGGTG 12.828709201821 13.2749963044494 -0.446287102628421 TTGCCACTAGGTGGTGGTG:5,CTGCCACTAGGTGGTGGTG:1 110111 49.5052229197212 53.9678595724515 52.9324174378104 NA REF 8 28491404 28491422 1 0 AGACCTCCAGGGGCCGCTA AGACCTCCAGGGGCTGCTA 9.45654833076454 7.00800932514741 2.44853900561712 AGACCTCCAGGGGCCGCTA:4,AGACCTCCAGGGGCTGCTA:2 001010 48.066752341898 23.647161159741 45.2148313842054 NA REF 8 29504988 29505006 1 0.145296562145825 CTATCAGCAGGGGGCAGCA CTATCAGCAGGGGGCAGCA 11.8181641058664 14.9092065592248 -3.09104245335832 CTACCAGCAGGGGGCAGCA:4,CTATCAGCAGGGGGCAGCA:2 110011 148.573037830486 82.6674357186337 150.388186596782 -66.813175 REF 8 61145964 61145982 1 1 TGACCACTAGGGGGAGCTA TGACCACTAGGGGGAGCTA 15.3373190162393 14.8933876273034 0.44393138893596 TGACCACTAGGGGGAGGTA:3,TGACCACTAGGGGGAGCTA:3 011010 24.5474760478306 50.8162374082357 44.1462810374601 NA REF 8 66474443 66474461 -1 0.94030978466188 AATCCACGAGATGGCAGCA AACCCACGAGATGGCAGCA 10.2109418940154 9.11232960534733 1.09861228866811 AATCCACGAGATGGCAGCA:4,AACCCACGAGATGGCAGCA:2 010100 52.8654029243443 39.5090326998717 11.2948873951811 NA REF 8 90629445 90629463 -1 0.950056667925954 ATAACAGTAGGTGTCGCTA ATAACAGTAGGTGTCGCCA 9.0187773389119 8.78993576648305 0.228841572428847 ATAACAGTAGGTGTCGCTA:5,ATAACAGTAGGTGTCGCCA:1 100000 46.312959023573 39.0855653187658 42.7728750616972 NA REF 8 96771060 96771078 -1 1 CCGCCACTAGAGGTCAGGG CCACCACTAGAGGTCAGGG 10.5545660252316 10.0967329316061 0.457833093625478 CCGCCACTAGAGGTCAGGG:4,CCACCACTAGAGGTCAGGG:2 001010 99.9730185331897 78.7822875920776 76.7335985170856 NA REF 8 104137302 104137320 1 0.347865508122403 CCGGCACTAGGGGGTGCTG CCGGCACTAGGGGGTGCTG 9.66172267811275 7.07772512568052 2.58399755243223 CCGGCACTAGGGGGTGTTG:3,CCGGCACTAGGGGGTGCTG:3 110010 0 163.758827403833 108.108897281789 163.75883 REF 8 107775457 107775475 1 1 CATCCACTAGATGGCGAAC CATCCACTAGATGGCGATC 10.5519613422019 11.7712016186586 -1.21924027645673 CATCCACTAGATGGCGAAC:5,CATCCACTAGATGGCGATC:1 010000 67.4583390946189 55.3423976804649 11.2948873951811 NA REF 8 133491058 133491076 -1 1 CGGCCACCAGGTGGGGGCG CGGCCACCAGGTGGGGGCA 11.7315163598071 12.1484101637389 -0.416893803931787 CGGCCACCAGGTGGGGGCG:5,CGGCCACCAGGTGGGGGCA:1 000100 25.5022230340119 87.3152129310456 63.5739089057911 NA REF 8 143864078 143864096 1 0.059841329807329 TGGCCACCAGAGGGCGCTC TGGCCACCAGAGGGCGCTC 16.7536608222277 17.2698772946286 -0.516216472400867 TGGCCACCAGGGGGCGCTC:4,TGGCCACCAGAGGGCGCTC:2 111001 260.654154318651 257.531106288321 271.389837982345 NA REF 9 1009271 1009289 -1 0.94030978466188 GCACCACTAGATGGCGCCA GCACCACAAGATGGCGCCA 13.3257443494166 12.2271320607485 1.09861228866811 GCACCACTAGATGGCGCCA:3,GCACCACAAGATGGCGCCA:3 011100 409.944051456662 359.206279486329 343.812472447081 -15.39381 REF 9 1732867 1732885 -1 0.145296562145825 TTGCCCGTAGGTGGCACTC TTGCCCGTAGGTGGCACTC 10.6401492659646 12.9427343589586 -2.30258509299405 TTGCCTGTAGGTGGCACTC:4,TTGCCCGTAGGTGGCACTC:2 011101 44.7239310091264 85.9264965411974 40.6005326934615 NA REF 9 19174434 19174452 -1 0.373932754061201 TGGCCATTAGATGTCGCTC TGGCCATTAGATGTCGCTC 9.6669641610286 8.46299135670266 1.20397280432594 TGGCCATTAGATGTCGCTT:4,TGGCCATTAGATGTCGCTC:2 011101 74.2180798895277 47.0204362526558 60.1411335204841 NA REF 9 35604040 35604058 1 0.788439743105402 CCGCCGCTAGGTGGCAGGC CCGCCACTAGGTGGCAGGC 10.2174743778051 12.6660133834222 -2.44853900561712 CCGCCGCTAGGTGGCAGGC:5,CCGCCACTAGGTGGCAGGC:1 010000 280.510992514746 171.290236467363 229.945179933078 NA REF 9 72164520 72164538 -1 1 TTACCACGAGAGGTCACCT TCACCACGAGAGGTCACCT 9.13638410751382 8.91324055619961 0.223143551314209 TTACCACGAGAGGTCACCT:3,TCACCACGAGAGGTCACCT:3 110100 164.91024807656 150.388186596782 129.246504623583 -35.66375 REF 9 88225175 88225193 -1 1 TTACCACCAGATGGCAGTC TTACCACTAGATGGCAGTC 14.3327712268308 14.0661425635769 0.26662866325395 TTACCACCAGATGGCAGTC:5,TTACCACTAGATGGCAGTC:1 010000 136.534262334201 121.095555934243 78.574657990821 NA ALT 9 95491842 95491860 1 0 GGGCCGGCAGAGGGAGCTC GGGCCGGCGGAGGGAGCTC 10.026461373086 6.88015624105263 3.14630513203337 GGGCCGGCAGAGGGAGCTC:5,GGGCCGGCGGAGGGAGCTC:1 001000 179.7825143386 130.512718055348 252.777842445813 NA REF 9 100161597 100161615 -1 0.110313562523612 TGGCCACCAGGAGGCGGTC TGGCCACCAGGAGGCGGTC 14.6103721896882 12.8186127204601 1.79175946922806 TGGCCACCAGGCGGCGGTC:5,TGGCCACCAGGAGGCGGTC:1 111101 563.149218855296 578.029175509767 536.320247728816 NA REF 9 118353953 118353971 1 0.345976577257272 TGACCACTAGAGGGAAGCA TGACCACTAGAGGAAAGCA 13.8365499584428 11.1856581711806 2.65089178726226 TGACCACTAGAGGGAAGCA:5,TGACCACTAGAGGAAAGCA:1 000010 142.67174170543 100.066898398337 81.5049963369957 NA REF 9 136303116 136303134 -1 0 TCCCCTGCAGAGGGCACTG TCCCCTGCAGACGGCACTG 10.9555994418417 6.94826625660921 4.00733318523247 TCCCCTGCAGAGGGCACTG:3,TCCCCTGCAGACGGCACTG:3 001110 104.807624100965 0 46.2276926962342 104.80762 REF 9 136647451 136647469 1 0.386777483944088 CGACCACGAGAGGGCAGTA CGACCACGAGAGGGCGGTA 13.6415772840953 13.9533569081261 -0.311779624030841 CGACCACGAGAGGGCAGTA:5,CGACCACGAGAGGGCGGTA:1 000010 212.247759425989 169.638939683912 233.037411128394 NA REF 9 139526035 139526053 -1 0.395919909331318 CAGCCACAGGAGGGCAGCA CAGCCACAGGAGGGCAGCA 10.6834416787383 11.1996581511392 -0.516216472400867 CAGCCACAGGGGGGCAGCA:5,CAGCCACAGGAGGGCAGCA:1 011111 244.022421977946 230.201214137949 276.709726122136 NA REF 10 6128536 6128554 1 0.0395919909331318 CAGCCCCGAGGGGGCGCTC CAGCCCCGAGGTGGCGCTC 9.27214061617759 8.87572534358934 0.396415272588246 CAGCCCCGAGGGGGCGCTC:3,CAGCCCCGAGGTGGCGCTC:3 110001 321.437504121691 306.016557519694 317.031403383302 -15.42094 REF 10 12889758 12889776 -1 0.551190026445032 CTGCCAGCGGGGGGCGCTG CTGCCAGCGGGGGTCGCTG 12.7883933022807 10.4251835874703 2.36320971481048 CTGCCAGCGGGGGGCGCTG:5,CTGCCAGCGGGGGTCGCTG:1 000010 66.1755596399203 66.523582471617 55.3512000866292 NA REF 10 13414059 13414077 1 0.51681148469966 TGGCCGGTAGGAGGCAGCA TGGCCGGTAAGAGGCAGCA 11.6935155868195 7.09839573668491 4.59511985013459 TGGCCGGTAGGAGGCAGCA:3,TGGCCGGTAAGAGGCAGCA:3 010110 233.92850609652 246.278447245746 225.2764953368 NA REF 10 24846259 24846277 -1 0.661428031734038 TGACCACCAGATGGCAGGA TGACCACCAGATGGCAGCA 14.227410711173 15.7033172309826 -1.47590651980958 TGACCACCAGATGGCAGGA:5,TGACCACCAGATGGCAGCA:1 000001 70.1462200171898 90.2120470593727 131.839851938393 NA REF 10 29734545 29734563 1 0.0395919909331318 TCCCCAGCAGAGGGCAGGC TCCCTAGCAGAGGGCAGGC 10.5272204659132 5.93210061577862 4.59511985013459 TCCCCAGCAGAGGGCAGGC:5,TCCCTAGCAGAGGGCAGGC:1 001000 60.1580125349732 21.4299549395809 92.7127818399482 NA REF 10 43362283 43362301 1 0.46913486966377 TAGCCACGAGGTGGCACCG TAGCCATGAGGTGGCACCG 13.547403960863 9.48696095031658 4.06044301054642 TAGCCACGAGGTGGCACCG:4,TAGCCATGAGGTGGCACCG:2 001100 130.075134648055 54.3757257203592 119.513149128866 70.41841 REF 10 59937294 59937312 1 0.408386853041179 ACACCACTAGGTGGTACTA ACACCACTAGGTGGAACTA 11.5336273159126 11.9856124396556 -0.451985123743057 ACACCACTAGGTGGTACTA:5,ACACCACTAGGTGGAACTA:1 100000 24.2582760215828 24.579749367678 42.266178686623 NA REF 10 63510876 63510894 1 0.138647525500567 CCCCCAGCAGAGGGAGCAG CTCCCAGCAGAGGGAGCAG 9.6971618665917 9.92030541790592 -0.223143551314211 CCCCCAGCAGAGGGAGCAG:5,CTCCCAGCAGAGGGAGCAG:1 000100 292.921485890074 233.600143949455 176.176865889363 NA REF 10 65632262 65632280 1 0.94030978466188 GGAGCAGCAGATGGCAGCA GGAGCAGCAGATAGCAGCA 9.63702103541382 5.05205355674325 4.58496747867057 GGAGCAGCAGATGGCAGCA:4,GGAGCAGCAGATAGCAGCA:2 001010 226.610017079464 126.607161416846 134.716833597085 NA REF 10 74124207 74124225 1 0.930789573101624 TTGCCAGCAGGTGGCACTT GTGCCAGCAGGTGGCACTT 14.097254279565 12.2646728158167 1.83258146374831 TTGCCAGCAGGTGGCACTT:5,GTGCCAGCAGGTGGCACTT:1 000010 368.806771594552 455.783614125378 365.22940558475 NA REF 10 82204610 82204628 1 0.244654325651681 CTGCCTCTAGGTGGCAGTG CTGCCTCTAGCTGGCAGTG 12.8736045217289 8.74647013668381 4.12713438504509 CTGCCTCTAGGTGGCAGTG:4,CTGCCTCTAGCTGGCAGTG:2 100010 386.875587561668 290.858649956399 317.180267022655 NA ALT 10 87898988 87899006 -1 0 CAACCTGTAGGGGGAGACA CAACCTGTGGGGGGAGACA 9.43144311351142 6.28513798147806 3.14630513203336 CAACCTGTAGGGGGAGACA:4,CAACCTGTGGGGGGAGACA:2 100001 193.299971714887 316.728356794641 191.709267079621 NA REF 10 92412468 92412486 -1 0.0395919909331318 ACACCAGTAGAGGGTGCCT ACGCCAGTAGAGGGTGCCT 9.05480890510952 9.512641998735 -0.45783309362548 ACACCAGTAGAGGGTGCCT:4,ACGCCAGTAGAGGGTGCCT:2 101000 0 23.9689033909232 11.2948873951811 NA ALT 10 99313438 99313456 -1 0.986173026067246 GAGCCAGCAGAGGGCAGCC GAGCCAGCAGAGGGCAGCG 12.5707109433074 12.9422744997399 -0.371563556432482 GAGCCAGCAGAGGGCAGCC:4,GAGCCAGCAGAGGGCAGCG:2 001100 279.70277016513 179.027898855519 195.413665413516 58.53032 REF 10 103929348 103929366 1 0.0787306384586324 GGGCCAGTAGGTGGCGATG GGGCCAGTAGGTGGCGATC 12.9232230173524 12.55165946092 0.371563556432482 GGGCCAGTAGGTGGCGATG:5,GGGCCAGTAGGTGGCGATC:1 001000 331.866521756816 372.454673523602 316.221478712254 NA REF 10 125319036 125319054 -1 0.930789573101624 GGACCACCAGGGAGCAGCC GGACCACCAGGGAGCAGCC 9.40994267318855 13.9949101518591 -4.58496747867057 GGACCACCAGGGGGCAGCC:4,GGACCACCAGGGAGCAGCC:2 101011 287.366618224502 356.375913786704 358.677056695723 NA REF 10 127671066 127671084 1 0.483868530411787 TTGACGCTAGGTGGCAGAA TTGACGCTAGGTGGCAGAA 9.4752928626435 11.9238318682606 -2.44853900561713 TTGACACTAGGTGGCAGAA:3,TTGACGCTAGGTGGCAGAA:3 001011 68.6677159695654 59.8920702664839 59.520503304823 9.14722 REF 10 130062351 130062369 1 1 CCGCCACTTGGGGGCAGCA CGGCCACTTGGGGGCAGCA 11.487340223591 12.5214139911215 -1.03407376753054 CCGCCACTTGGGGGCAGCA:5,CGGCCACTTGGGGGCAGCA:1 000010 105.358463333427 112.846007884894 133.108910276619 NA REF 11 2449606 2449624 1 0.454023422742728 CAGCCACCAGAGGGCGCTA CAGCCACCAGAGGGTGCTA 16.1795403480894 13.7310013424723 2.44853900561713 CAGCCACCAGAGGGCGCTA:4,CAGCCACCAGAGGGTGCTA:2 001001 193.436627135355 259.468313087206 192.099307476527 NA REF 11 8121033 8121051 -1 0.930789573101624 TGGTCAGCAGGTGGCACCA TGGTCAGCAGGTGGCATCA 13.5807306346844 10.9967330822522 2.58399755243223 TGGTCAGCAGGTGGCACCA:5,TGGTCAGCAGGTGGCATCA:1 000010 148.724054656975 136.352529944921 136.146641002148 NA REF 11 21533577 21533595 -1 0.533811862485833 TCGCCACCAGGTGGCACCA TTGCCACCAGGTGGCACCA 16.0872244184144 16.3103679697286 -0.223143551314212 TCGCCACCAGGTGGCACCA:3,TTGCCACCAGGTGGCACCA:3 110010 174.626481483205 197.450044160195 169.057887893003 22.82356 REF 11 26298558 26298576 -1 0.707366830374008 CAGCCACTAGAGGGCAAGC AAGCCACTAGAGGGCAAGC 11.334859271986 10.1717084621803 1.16315080980568 CAGCCACTAGAGGGCAAGC:5,AAGCCACTAGAGGGCAAGC:1 100000 200.057830299103 243.958291839793 204.634601479874 NA REF 11 26775603 26775621 1 1 AGACCACCAGATGGCAGCC AGACCACCAGATGGCAGCC 13.3054219581842 13.7632550518097 -0.457833093625482 AGGCCACCAGATGGCAGCC:3,AGACCACCAGATGGCAGCC:3 101010 58.9691855779681 50.6789802267643 54.3477682752025 NA REF 11 31128707 31128725 1 1 TAACCAGCAGGGGGGGCCA TAACCAGCAGGGGGGGCCA 11.6113950044897 13.557305153545 -1.94591014905531 TAACCAGCAGGGGGTGCCA:4,TAACCAGCAGGGGGGGCCA:2 101011 91.4201985288641 108.077652607066 97.7728207069367 NA REF 11 35164099 35164117 -1 0 CTCCCAGCAGGGGGCGGAG CTCCCAGCAGGGGGCGGAG 11.9891443832449 7.3940245331103 4.59511985013459 CTCCCAGCAAGGGGCGGAG:5,CTCCCAGCAGGGGGCGGAG:1 011111 41.7630944301184 0 11.2948873951811 NA REF 11 35413948 35413966 -1 0.73449187759728 TGGACACATGGGGGCGCTG TGCACACATGGGGGCGCTG 9.75117024129552 7.468787855619 2.28238238567653 TGGACACATGGGGGCGCTG:5,TGCACACATGGGGGCGCTG:1 000010 210.195634187204 183.891839760616 204.547513682107 NA REF 11 59570218 59570236 -1 0.43203626747261 TCACCACATGGTGGCACCA TTACCACATGGTGGCACCA 10.4246980602735 10.6478416115877 -0.223143551314209 TCACCACATGGTGGCACCA:5,TTACCACATGGTGGCACCA:1 000100 63.0275587474157 39.5384031928789 62.4614545300591 NA REF 11 66263234 66263252 -1 0.0395919909331318 CCGCCTCCAGGGGGCTCCA CCGCCTCCAAGGGGCTCCA 10.9250636405514 6.32994379041684 4.59511985013459 CCGCCTCCAGGGGGCTCCA:4,CCGCCTCCAAGGGGCTCCA:2 001001 0 43.9644078614003 39.7659182539399 NA REF 11 68593248 68593266 1 0.0184359652436721 TCCCCAGAAGAGGGCACAC TCCCCAGAAGGGGGCACAC 10.0914187187088 10.6076351911097 -0.516216472400867 TCCCCAGAAGAGGGCACAC:4,TCCCCAGAAGGGGGCACAC:2 110000 50.4325785679538 0 41.1788971797884 -29.84313 REF 11 68869033 68869051 1 1 AAGCCAGCGGAGGGCAGCA AAGCCAGCGGAGGGCAGCA 10.4360067229525 11.3522974548267 -0.916290731874156 AGGCCAGCGGAGGGCAGCA:5,AAGCCAGCGGAGGGCAGCA:1 011111 546.351597340816 692.882305838957 600.078331250056 NA REF 11 72953830 72953848 -1 0.131469588213071 TGGCCACCAGGGGGAAGCA TGGCCACCGGGGGGAAGCA 15.0772281877231 11.9309230556897 3.14630513203337 TGGCCACCAGGGGGAAGCA:5,TGGCCACCGGGGGGAAGCA:1 001000 329.535573106914 272.862603551194 345.725080861452 NA REF 11 94336426 94336444 -1 0.587910842463166 CGCCCAGCAGGTGACAGGA CGCCCAGCAGGTGACAGGA 9.37237390372996 12.0232656909922 -2.65089178726226 CGCCCAGCAGGTGGCAGGA:4,CGCCCAGCAGGTGACAGGA:2 111100 122.776009889846 68.2340976594389 11.2948873951811 -84.210165 REF 11 113160485 113160503 -1 0.418738194182093 CGGCCACTTGGTGGCAGTC TGGCCACTTGGTGGCAGTC 11.5653829305978 12.0116700332263 -0.446287102628421 CGGCCACTTGGTGGCAGTC:4,TGGCCACTTGGTGGCAGTC:2 100001 327.403572782048 384.681027373816 301.118366744417 NA REF 11 124285428 124285446 1 0.0649036645258784 TAGCCACTAGGTTGTGCTG TAGCCACTAGGTTGTGCTG 9.028599699057 4.43347984892241 4.59511985013459 TAGCCACTAAGTTGTGCTG:3,TAGCCACTAGGTTGTGCTG:3 010101 58.9224014333409 62.5158012866883 78.4756953333115 NA REF 11 126310897 126310915 1 0 TATCCAGTAGAGGGCGCCC TATCCAGTAGAGGGCGTCC 13.7086046597601 11.1246071073279 2.58399755243223 TATCCAGTAGAGGGCGCCC:5,TATCCAGTAGAGGGCGTCC:1 001000 236.641698936971 292.250111065184 290.805018809315 NA REF 11 133705264 133705282 -1 0.94030978466188 AAACCACCAGATGGTGACG AAACCACCAGATGGTGACG 9.29479945387632 11.0678667900922 -1.7730673362159 AAACCACCAGATGGTGCCG:3,AAACCACCAGATGGTGACG:3 100011 107.32749875187 75.8836482071275 169.782924275179 -93.89927 REF 12 1059127 1059145 -1 0.131469588213071 GGCCCACCAGGGGGCAGCA GGCCCACCAGGGGGCAGCA 12.9588182201723 14.0574305088405 -1.09861228866811 GGTCCACCAGGGGGCAGCA:5,GGCCCACCAGGGGGCAGCA:1 110111 280.321624567681 237.643762896818 326.623247127011 NA REF 12 12186450 12186468 -1 0.522856063468077 TGGTCACCAGGTGGCGCTA TGGTCACCAGGTGGCGCTA 14.5708769290463 14.2590973050154 0.311779624030841 TGGTCACCAGGTGGCACTA:4,TGGTCACCAGGTGGCGCTA:2 111001 159.793037309089 199.375129713114 153.550538746171 NA REF 12 47426531 47426549 1 1 AAGCCACTAGATGGCCCTA AAACCACTAGATGGCCCTA 10.3279939117064 9.87016081808088 0.457833093625478 AAGCCACTAGATGGCCCTA:4,AAACCACTAGATGGCCCTA:2 001001 20.6294618992189 0 11.2948873951811 NA REF 12 48336295 48336313 1 0.0649036645258784 CCGCCTGCAGGGGGCAGCC CCGCCTGCAGGGGGCATCC 12.2635746794934 10.1235085159971 2.14006616349627 CCGCCTGCAGGGGGCAGCC:5,CCGCCTGCAGGGGGCATCC:1 000010 54.1805035222672 89.724834818435 53.3420575588157 NA REF 12 48583474 48583492 -1 0.871099357763506 TTCCCGACAGGTGGCACCA TTCCCGACAGGTGGCACCA 8.90529792900839 8.68215437769418 0.223143551314211 TCCCCGACAGGTGGCACCA:5,TTCCCGACAGGTGGCACCA:1 111101 176.380946708715 161.187013340018 174.401509626258 NA REF 12 50464453 50464471 -1 0.658179070646014 TTCCCACTAGAGGGCACTG TTCCCACTAGAGGGCACTG 13.4535034894825 13.2303599381683 0.223143551314212 TCCCCACTAGAGGGCACTG:3,TTCCCACTAGAGGGCACTG:3 101010 394.352241250364 386.488143593474 307.927042773644 NA REF 12 51441680 51441698 1 0.94030978466188 GCACCATTAGAGGGCGCCG TCACCATTAGAGGGCGCCG 9.24482280752663 11.0774042712749 -1.83258146374831 GCACCATTAGAGGGCGCCG:5,TCACCATTAGAGGGCGCCG:1 010000 293.49165831011 305.77627326196 350.119547004891 NA REF 12 53273886 53273904 -1 0.533585190782017 CATCCACTAGGAGGCAGCA TATCCACTAGGAGGCAGCA 12.0452317588278 12.4915188614562 -0.446287102628418 CATCCACTAGGAGGCAGCA:5,TATCCACTAGGAGGCAGCA:1 001000 352.150229060761 325.066717029018 245.164398830594 NA REF 12 101127792 101127810 -1 1 AATCCACAAGAGGGCGATC AATCCACAAGAGGGCAATC 9.90585379277306 9.59407416874222 0.311779624030841 AATCCACAAGAGGGCGATC:5,AATCCACAAGAGGGCAATC:1 000001 67.096784247299 20.6970153878308 11.2948873951811 NA REF 12 101135076 101135094 -1 0.458859085757461 TTACCTCTAGGTGGCAGCA TTACCTCTAGGTGGCAGGA 13.0501107622348 11.5742042424252 1.47590651980958 TTACCTCTAGGTGGCAGCA:5,TTACCTCTAGGTGGCAGGA:1 001000 83.6448226940988 83.3931422128815 73.1066417276945 NA REF 12 103096493 103096511 -1 0.145296562145825 CAGCCACCAGGGGGCGGGT CAGCCACCAGGGGGTGGGT 12.5546471746257 10.1061081690085 2.44853900561713 CAGCCACCAGGGGGCGGGT:5,CAGCCACCAGGGGGTGGGT:1 000001 108.965154914719 123.790953765178 51.3333700802432 NA REF 12 103277165 103277183 1 0.714771439365319 CGAACGCCAGAGGGCAGCA TGAACGCCAGAGGGCAGCA 10.5193290500751 10.9656161527036 -0.446287102628418 CGAACGCCAGAGGGCAGCA:5,TGAACGCCAGAGGGCAGCA:1 000001 188.870521945898 244.828688979422 242.831291131425 NA REF 12 107528534 107528552 1 0.277446165470344 AGGCCACCAGGGGTAGGCA AGGCCACCAGGGGTAGGCA 11.4163601845094 9.9404536646998 1.47590651980958 AGGCCACCAGGGGTAGGGA:3,AGGCCACCAGGGGTAGGCA:3 010110 91.407913439482 54.3505800898067 59.9871368125703 NA REF 12 113430819 113430837 1 0.686059690215338 CTGCCACTAGATGGTGGTA CTGCCACTAGATGGTGGTA 12.7293865333519 11.0246384411135 1.70474809223843 CTGCCACTAGATGGTGGGA:5,CTGCCACTAGATGGTGGTA:1 011111 274.407253107183 197.264606745139 174.658912787131 NA REF 12 119851163 119851181 -1 0.633094068757083 ATAACAGTAGGTGGCGCTA AAAACAGTAGGTGGCGCTA 11.3819870537224 11.2766265380646 0.105360515657829 ATAACAGTAGGTGGCGCTA:4,AAAACAGTAGGTGGCGCTA:2 010010 216.456330887233 210.27143628405 177.867158043233 NA REF 12 121668254 121668272 -1 1 TCACCACTAGGGGGAGGCA TCACCACTAGGGGGAGGCG 13.630472287344 13.2135784834122 0.416893803931787 TCACCACTAGGGGGAGGCA:5,TCACCACTAGGGGGAGGCG:1 100000 235.370975203367 164.210424582609 227.649548606527 NA REF 12 125383126 125383144 -1 0.0395919909331318 GTACCCGCAGGTGGCGCCA GTACCCGCAGGTGGCGCCA 9.48775878381098 6.15555427363578 3.3322045101752 GTACCCGCAGGTGGCTCCA:4,GTACCCGCAGGTGGCGCCA:2 011110 226.098017928633 150.9506318449 215.157986213302 NA REF 12 128744210 128744228 1 0.728976199471099 GGACCACCAGGGAGCGCTG GGGCCACCAGGGAGCGCTG 10.7660588150167 11.2238919086422 -0.45783309362548 GGACCACCAGGGAGCGCTG:5,GGGCCACCAGGGAGCGCTG:1 000100 61.9500330773591 118.55939085563 60.0603415826898 NA REF 12 131490135 131490153 -1 0 AAGTCAACAGGGGGCAGTG AAGTCAACGGGGGGCAGTG 8.59481009100114 5.44850495896778 3.14630513203336 AAGTCAACAGGGGGCAGTG:5,AAGTCAACGGGGGGCAGTG:1 010000 0 55.5519376525081 54.2573638794365 NA REF 13 25268399 25268417 1 0.811409142425387 ATGCCAGTAGGTGGCACTG ATGCCAGTAGGTGGCACTA 13.7967240646354 14.2136178685672 -0.416893803931787 ATGCCAGTAGGTGGCACTG:4,ATGCCAGTAGGTGGCACTA:2 100100 172.026197914187 169.544959891064 156.610603773282 NA REF 13 42790440 42790458 -1 0.661428031734038 CGAACTCTAGGTGGCGGCA TGAACTCTAGGTGGCGGCA 11.0409561546034 11.4872432572318 -0.446287102628421 CGAACTCTAGGTGGCGGCA:5,TGAACTCTAGGTGGCGGCA:1 100000 121.752011214235 23.5300523012431 88.7429108634221 NA REF 13 48612204 48612222 1 0.0329429542878731 CGCCCAGGAGGGGGCGCTG CGCCCAGGAGAGGGCGCTG 12.2225365755779 11.7063201031771 0.516216472400867 CGCCCAGGAGGGGGCGCTG:5,CGCCCAGGAGAGGGCGCTG:1 100000 606.249427849879 481.345758091361 516.461380633186 NA REF 13 50244024 50244042 1 0.0787306384586324 CAACCACAGGATGGCACTG CAACCACAGGATGGCACTG 10.0850724699576 9.85623089752876 0.228841572428848 CAACCACAGGATGGCACCG:4,CAACCACAGGATGGCACTG:2 111100 93.4237218897225 68.9023260576807 139.165480507851 58.002455 REF 13 53542392 53542410 1 0.430525122780506 CCGCCGGTAGAGGGCAGCT CCGCCCGTAGAGGGCAGCT 9.92008179557388 7.97417164651857 1.94591014905532 CCGCCGGTAGAGGGCAGCT:4,CCGCCCGTAGAGGGCAGCT:2 100001 444.914328931713 567.531862611142 382.390657617049 NA REF 13 82904826 82904844 -1 0.11696259916887 CATCCACCAGATGTCGCAG TATCCACCAGATGTCGCAG 10.6000111832937 11.0462982859222 -0.446287102628418 CATCCACCAGATGTCGCAG:5,TATCCACCAGATGTCGCAG:1 001000 59.9349416794666 47.4829906591396 60.3497841249607 NA REF 13 107857838 107857856 1 0.82115602568946 TCGCCACCAGGGGGCGCCC TCGCCACCAGGGGGCGACC 16.0069619546692 14.2338946184533 1.7730673362159 TCGCCACCAGGGGGCGCCC:5,TCGCCACCAGGGGGCGACC:1 100000 279.896410064283 282.572996359945 293.379516762377 NA REF 14 21325980 21325998 1 0.0787306384586324 TTGCCGGCAGGGGGCGCTC TTGCCGGCAGGGGGCGCTC 13.5608829748929 16.00942198051 -2.44853900561712 TTGCCAGCAGGGGGCGCTC:5,TTGCCGGCAGGGGGCGCTC:1 011111 214.265453801404 210.487823714958 224.314188446835 NA REF 14 22370957 22370975 1 0.0787306384586324 TGGCCTCCAGAGAGCGATG TGGCCTCCAGAGGGCGATG 8.67532550209531 13.2602929807659 -4.58496747867057 TGGCCTCCAGAGAGCGATG:3,TGGCCTCCAGAGGGCGATG:3 101010 47.1031713802588 48.5247229812131 41.7630944301184 NA REF 14 24058365 24058383 1 0.811409142425387 CAGCCACCAGGGGTCAGGA CAGCCACCAGGGGTCAGTA 11.8720880004745 13.576836092713 -1.70474809223843 CAGCCACCAGGGGTCAGGA:5,CAGCCACCAGGGGTCAGTA:1 100000 354.988946511625 275.444093975674 283.610004753105 NA REF 14 24527660 24527678 1 0.769097091046468 TTTCCACCAGAGGGCAGGA TTTCCACCAGAGAGCAGGA 13.086958764162 8.50199128549142 4.58496747867057 TTTCCACCAGAGGGCAGGA:4,TTTCCACCAGAGAGCAGGA:2 001001 198.294777667993 136.396643172164 116.498017159315 NA REF 14 67894013 67894031 1 0.803173403853419 TTGCCACTAGAGGGTGACC TTGCCACTAGAGGGTGGCC 11.2256540284955 12.5547899757755 -1.32913594727994 TTGCCACTAGAGGGTGACC:5,TTGCCACTAGAGGGTGGCC:1 010000 168.734328738563 156.074072861618 171.176428400456 NA REF 14 68303923 68303941 1 0.11696259916887 CTGCCACCAGGTGGTGCCA CTACCACCAGGTGGTGCCA 13.7273214855139 13.2694883918884 0.45783309362548 CTGCCACCAGGTGGTGCCA:3,CTACCACCAGGTGGTGCCA:3 110001 53.3359370438781 82.2845325607518 80.8304394300206 28.94859 REF 14 77342527 77342545 1 0.917340385341896 TTCCCAGCAGAGGGTGCTC TTCCCAGCAGAGGGTGTTC 10.7622841168155 8.17828656438329 2.58399755243223 TTCCCAGCAGAGGGTGCTC:5,TTCCCAGCAGAGGGTGTTC:1 000100 267.013275509231 182.098637442251 323.222996963118 NA REF 14 79426218 79426236 1 0.794182092935398 CAGCCACTAGATGGCGACC CAGCCGCTAGATGGCGACC 12.7261301432382 10.277591137621 2.44853900561712 CAGCCACTAGATGGCGACC:4,CAGCCGCTAGATGGCGACC:2 110000 162.104847235983 217.703645826443 194.91509847619 44.204525 REF 14 93153403 93153421 1 0.299659992444276 CGGCCACAAGGGGGCAGCC CGGCCACAAAGGGGCAGCC 14.4737966546824 9.87867680454784 4.59511985013459 CGGCCACAAGGGGGCAGCC:4,CGGCCACAAAGGGGCAGCC:2 101000 230.121051905319 254.641738660078 464.462219863264 NA REF 14 94373257 94373275 -1 0.86203248961088 TGGCCACGAGAGGGAGCCC TGGCCATGAGAGGGAGCCC 12.2875556786488 8.2271126681024 4.06044301054642 TGGCCACGAGAGGGAGCCC:5,TGGCCATGAGAGGGAGCCC:1 000001 280.722441019753 263.044761784649 172.001897383981 NA REF 14 95156003 95156021 1 0.477219493766528 CCGCCACGAGGCGGCGCCA CTGCCACGAGGCGGCGCCA 10.1010893378966 10.3242328892108 -0.223143551314207 CCGCCACGAGGCGGCGCCA:5,CTGCCACGAGGCGGCGCCA:1 001000 357.318041284964 355.890619023977 520.375018413283 NA REF 14 96150341 96150359 -1 0.425009444654326 CCTCCAGCAGAGGGAGCCC CCTCCCGCAGAGGGAGCCC 11.4146093028552 7.02016014818277 4.39444915467244 CCTCCAGCAGAGGGAGCCC:5,CCTCCCGCAGAGGGAGCCC:1 000010 306.208499531413 299.903830192612 183.650160930668 NA REF 14 100844351 100844369 -1 0.455610124669437 AGGACAGCAGAGGGCGCGG AGGACAGCAGAGGGCGCGG 10.6759359308353 9.75964519896115 0.916290731874152 AAGACAGCAGAGGGCGCGG:4,AGGACAGCAGAGGGCGCGG:2 011011 256.681750352476 264.932671257173 274.858771494826 NA REF 14 106974424 106974442 -1 0 TCAGCTGCAGGGGGCGCTC CCAGCTGCAGGGGGCGCTC 9.45239163997369 9.00610453734527 0.446287102628419 TCAGCTGCAGGGGGCGCTC:4,CCAGCTGCAGGGGGCGCTC:2 110000 124.158257221091 195.665319107303 237.152618563737 92.25071 REF 14 107108798 107108816 1 0 TCACCAGTAGAGGGAGGGC TCACCAGGAGAGGGAGGGC 10.4003668368671 8.42628581084507 1.97408102602201 TCACCAGTAGAGGGAGGGC:4,TCACCAGGAGAGGGAGGGC:2 000101 0 10.6468419217993 11.2948873951811 NA REF 15 25955428 25955446 -1 0.0787306384586324 TGCCCAGCAGGGGGCGCCG TGCCCAGCAGGGGGCGCAG 14.6806917950535 13.6902930910256 0.990398704027877 TGCCCAGCAGGGGGCGCCG:3,TGCCCAGCAGGGGGCGCAG:3 100110 25.1530736213105 98.9206653368036 309.27041301849 NA REF 15 27134637 27134655 1 0.770230449565546 CGGCCACTTGAGGGCAGCA CGGCCACTTGGGGGCAGCA 12.0051975187206 12.5214139911215 -0.516216472400867 CGGCCACTTGAGGGCAGCA:4,CGGCCACTTGGGGGCAGCA:2 100010 57.2637454459435 46.6345577516503 11.2948873951811 NA ALT 15 29432181 29432199 1 0.458859085757461 CTGCCTGTAGGGGGTGCCA CCGCCTGTAGGGGGTGCCA 11.3157189352676 11.0925753839534 0.223143551314211 CTGCCTGTAGGGGGTGCCA:4,CCGCCTGTAGGGGGTGCCA:2 000101 316.048900873574 384.120115588387 318.14835131133 NA REF 15 31421663 31421681 -1 0.0649036645258784 CGGCCAGGTGGGGGCAGCA CGGCCGGGTGGGGGCAGCA 10.0978078671973 7.64926886158017 2.44853900561713 CGGCCAGGTGGGGGCAGCA:5,CGGCCGGGTGGGGGCAGCA:1 010000 341.761787888831 316.400321254585 329.344620635249 NA REF 15 34030079 34030097 -1 0.425462788061957 TCGCCAGTAGAGGGCAGAA TCGCCAGTAGAGGGCAGAA 13.8169393644818 14.040082915796 -0.223143551314212 TTGCCAGTAGAGGGCAGAA:5,TCGCCAGTAGAGGGCAGAA:1 111011 188.282475875858 192.165725288799 152.285373448756 NA REF 15 34502389 34502407 -1 0.413675859463544 TAGCCACCAGGGGGCACTG TGGCCACCAGGGGGCACTG 16.413370495156 17.3296612270302 -0.916290731874156 TAGCCACCAGGGGGCACTG:4,TGGCCACCAGGGGGCACTG:2 100001 232.293216512467 309.088445191217 284.379699670241 NA REF 15 58505313 58505331 1 0.950056667925954 TGCCCAGCAGAGGGAGCAG TGCCCAGCAGAAGGAGCAG 11.1775227367507 8.96194902074625 2.21557371600442 TGCCCAGCAGAGGGAGCAG:5,TGCCCAGCAGAAGGAGCAG:1 000001 0 20.7129500234593 11.2948873951811 NA REF 15 74010301 74010319 -1 0.293842085379675 AATCCACTAGGAGGCAGAC AATCCACTAGGAGGCAGAT 9.10322488463 7.89925208030406 1.20397280432594 AATCCACTAGGAGGCAGAC:5,AATCCACTAGGAGGCAGAT:1 010000 39.7959282927828 25.4438785834829 11.2948873951811 NA REF 15 75976237 75976255 -1 0.0329429542878731 CAGCCACCAGGTGGTGCCA CGGCCACCAGGTGGTGCCA 13.621960969856 14.5382517017302 -0.916290731874154 CAGCCACCAGGTGGTGCCA:5,CGGCCACCAGGTGGTGCCA:1 100000 288.793829648568 274.899051134267 310.679210827009 NA ALT 15 81567561 81567579 1 0.455610124669437 TGACCACGAGATGGCGCTG TGACCACGAGATGGCACTG 14.0302663231705 13.7184866991397 0.311779624030841 TGACCACGAGATGGCGCTG:4,TGACCACGAGATGGCACTG:2 010100 267.595867507427 303.882129403922 270.824579832158 NA REF 15 84403522 84403540 1 0.670646014355874 TTGCCCCCAGGGGTCACTC TTGCCCCCAGGGGTCACTC 9.38950858489847 8.94322148227005 0.446287102628421 CTGCCCCCAGGGGTCACTC:4,TTGCCCCCAGGGGTCACTC:2 001111 0 40.1732705178143 11.2948873951811 -25.73408 REF 15 85712268 85712286 -1 0.0395919909331318 CCTCCACTGGGGGGCGATG CCTCCACTGGGGGGCGATG 9.79130875239045 9.47952912835961 0.311779624030841 CCTCCACTGGGGGGCAATG:3,CCTCCACTGGGGGGCGATG:3 101010 50.4552302441819 48.4238511077612 57.1011358959309 NA REF 16 2969838 2969856 -1 0.0184359652436721 TGGCCACAAGATGGTGGTG GGGCCACAAGATGGTGGTG 12.4710977595968 10.6385162958485 1.83258146374831 TGGCCACAAGATGGTGGTG:4,GGGCCACAAGATGGTGGTG:2 011000 140.390573719317 148.573037830486 138.401458672789 NA REF 16 22910316 22910334 1 0.930789573101624 TACCCACTAGGGGGCGCTG TACCCACTAGGGGACGCTG 14.1761390702564 11.5252472829942 2.65089178726226 TACCCACTAGGGGGCGCTG:5,TACCCACTAGGGGACGCTG:1 100000 87.4205107172335 160.934683680679 100.544936493131 NA REF 16 31171169 31171187 -1 0.633094068757083 TTGCCACGAGAGGGAGCAC TTGCCACGAGAGGGAGCAC 10.4862267584046 7.83533497114235 2.65089178726226 TTGCCACGAGAGGAAGCAC:4,TTGCCACGAGAGGGAGCAC:2 011110 98.3337714599469 0 75.7751631151228 NA REF 16 66440534 66440552 1 0.797431054023423 TGACCACTAGGGGGCGCGC TGAGCACTAGGGGGCGCGC 14.8406674455107 11.0564778115924 3.78418963391826 TGACCACTAGGGGGCGCGC:4,TGAGCACTAGGGGGCGCGC:2 100010 163.155685402517 156.217439632375 179.406380843825 NA REF 16 77709802 77709820 1 0.546354363430298 TATCCAGCAGAGGGCAGGA TACCCAGCAGAGGGCAGGA 12.532073150602 11.4334608619339 1.09861228866811 TATCCAGCAGAGGGCAGGA:4,TACCCAGCAGAGGGCAGGA:2 101000 177.211085925771 176.792532160588 157.383903947958 NA ALT 16 81400127 81400145 1 0.610955799017756 CTACCAGAAGAGGGTGCCA CTACCAGAAGAGGGTGCCA 11.3349211422515 11.7812082448799 -0.446287102628419 TTACCAGAAGAGGGTGCCA:4,CTACCAGAAGAGGGTGCCA:2 111100 42.3768959530895 52.0615632307693 40.3594022700337 -6.85983 REF 16 84311019 84311037 1 0.597657725727238 CTTCCAGCAGGGGGCGCTG CTTCCAGCAGGGGGCGTTG 14.7509283373057 12.1669307848735 2.58399755243223 CTTCCAGCAGGGGGCGCTG:4,CTTCCAGCAGGGGGCGTTG:2 010100 255.504129012251 213.95968585822 183.266440040457 NA REF 16 84545119 84545137 1 0 TGTCCACCAGGTGGCGCTC TGTCCACGAGGTGGCGCTC 15.6896919250319 13.4489822357559 2.24070968927596 TGTCCACCAGGTGGCGCTC:4,TGTCCACGAGGTGGCGCTC:2 100001 287.083749697754 282.320558442216 180.023611373003 NA REF 16 84759812 84759830 -1 0.339327540612014 ACGGCACTAGGGGGCGCTG AAGGCACTAGGGGGCGCTG 10.9471108739242 11.0648939095806 -0.117783035656384 ACGGCACTAGGGGGCGCTG:5,AAGGCACTAGGGGGCGCTG:1 100000 285.828145989121 241.385796147149 206.065026422406 NA REF 16 85120492 85120510 -1 0.0787306384586324 TGGCCACCAGGGGTCGTGT TGGCCACCAGGGGTCGTGT 9.41394913082149 8.89773265842062 0.516216472400867 TGGCCACCAGAGGTCGTGT:3,TGGCCACCAGGGGTCGTGT:3 110001 177.769455059039 240.422607223319 187.575971292319 62.65315 REF 16 87812848 87812866 1 0.74695882130714 CGGCCGCCAGGGGTCACTC CGGCCGCCAGGGGTCACTC 11.7000618475417 11.2561304586057 0.44393138893596 CGGCCGCCAGGGGTCAGTC:4,CGGCCGCCAGGGGTCACTC:2 111100 402.062421692104 425.537678983442 334.657943209992 -79.14211 REF 16 89682152 89682170 1 0.404004533434076 TGGCCACCAGAGGGCAGGA TGGCCACCAGAGGGCAGCA 15.0816590773867 16.5575655971963 -1.47590651980958 TGGCCACCAGAGGGCAGGA:5,TGGCCACCAGAGGGCAGCA:1 000001 81.9304617751077 111.743197571141 219.945829726167 NA REF 17 603934 603952 -1 0.651001133358519 TGTCCATTAGGGGGCACCA TGTCCATTAGGGGGCACCG 12.0068716877244 11.5899778837926 0.416893803931787 TGTCCATTAGGGGGCACCA:5,TGTCCATTAGGGGGCACCG:1 001000 0 11.0403114947429 11.2948873951811 NA REF 17 7184037 7184055 1 0.815489233094069 CGCCCTCCAGGTGGCAGCA CGCCCTCCAAGTGGCAGCA 11.8568332470256 7.26171339689101 4.59511985013459 CGCCCTCCAGGTGGCAGCA:5,CGCCCTCCAAGTGGCAGCA:1 000010 363.56169525924 404.801715436725 229.928645788942 NA REF 17 9672129 9672147 -1 1 TAGCCACAAGGGAGCACTG TAGCCACAAGGGGGCACTG 10.4631620645634 15.048129543234 -4.58496747867057 TAGCCACAAGGGAGCACTG:4,TAGCCACAAGGGGGCACTG:2 001100 0 25.1239342872962 11.2948873951811 -19.476485 ALT 17 10220745 10220763 1 0.0787306384586324 CTGGCAGCAGGGGGCGCTG CTGGCAGCAGGGGGCGCTG 12.1505088003958 11.838729176365 0.311779624030841 CTGGCAGCAGGGGGCACTG:3,CTGGCAGCAGGGGGCGCTG:3 001110 303.882129403922 96.0666993283094 212.602702900769 207.81543 REF 17 43099503 43099521 -1 0.971666037023045 CGGCCGGCAGGTGGCAGCA CGGCCGGGAGGTGGCAGCA 13.3330155908612 11.0923059015852 2.24070968927596 CGGCCGGCAGGTGGCAGCA:4,CGGCCGGGAGGTGGCAGCA:2 100001 246.488544325915 199.036410446385 270.747334341052 NA REF 17 43971774 43971792 -1 0.88492633169626 CGGCCACTAGTGGGCGCGC CGGCCACCAGTGGGCGCGC 10.7250790514627 10.9917077147166 -0.266628663253947 CGGCCACTAGTGGGCGCGC:4,CGGCCACCAGTGGGCGCGC:2 100001 339.42839701387 327.07797977306 439.487278131003 NA REF 17 46891960 46891978 1 0.60173781639592 TGGCCACCAGGGGGAGGGA TGCCCACCAGGGGGAGGGA 13.9131012919444 11.6307189062678 2.28238238567653 TGGCCACCAGGGGGAGGGA:5,TGCCCACCAGGGGGAGGGA:1 010000 161.97744571434 200.536104961515 200.500513740184 NA ALT 17 47269298 47269316 -1 0.0649036645258784 AAACCACCAGGTGGGACTG AAACCACCAGCTGGGACTG 9.55523506183578 5.42810067679069 4.12713438504509 AAACCACCAGGTGGGACTG:5,AAACCACCAGCTGGGACTG:1 100000 66.3440403983453 25.1680243621649 76.2665495539125 NA REF 17 53591550 53591568 -1 0.291273139403098 TGGCCACTAGATGGCACCA TGGCCACTAGATGGCGCCA 16.3384530502901 16.6502326743209 -0.311779624030844 TGGCCACTAGATGGCACCA:4,TGGCCACTAGATGGCGCCA:2 100100 153.393715138869 171.214971082612 154.536438150286 NA REF 17 64563503 64563521 -1 0.682357385719683 CTGCCAGCAGGGGTCAGTC CCGCCAGCAGGGGTCAGTC 12.4442141501043 12.2210705987901 0.223143551314209 CTGCCAGCAGGGGTCAGTC:4,CCGCCAGCAGGGGTCAGTC:2 100100 259.292805031398 243.258624785273 284.921914168876 NA ALT 17 71187777 71187795 1 0 CTGCCAACAGAGGGTGCTC CCGCCAACAGAGGGTGCTC 10.3737558483393 10.1506122970251 0.223143551314209 CTGCCAACAGAGGGTGCTC:4,CCGCCAACAGAGGGTGCTC:2 001001 244.279043643058 199.395419599206 177.315657625978 NA ALT 17 77038618 77038636 -1 0.389497544389875 TGGCCACCAGGCGGCGCAT TGGCCACCAGGCGGCGCAT 10.8393310286134 6.25436354994286 4.58496747867057 TGGCCACCAGGCAGCGCAT:3,TGGCCACCAGGCGGCGCAT:3 100011 185.840232377807 298.549412516991 11.2948873951811 287.25452 REF 17 80452726 80452744 -1 0.11696259916887 TGGCCAGTAGGGGTCGCCG TGGCCAGTAGGGGTCGCCA 14.3332358026656 14.7501296065974 -0.416893803931787 TGGCCAGTAGGGGTCGCCG:5,TGGCCAGTAGGGGTCGCCA:1 000001 459.590784055123 338.996255706259 442.681295268275 NA REF 18 3998926 3998944 -1 0.394559879108425 TGTCCAGTAGGTGGCAGAA TGTCCAGTAGATGGCAGAA 13.7870442348165 13.2708277624156 0.516216472400867 TGTCCAGTAGGTGGCAGAA:4,TGTCCAGTAGATGGCAGAA:2 000011 113.516019833658 83.3703354785835 11.2948873951811 87.14829 REF 18 5073441 5073459 1 0.445032111824707 CGGTCACCAGGTGACAGCA CTGTCACCAGGTGACAGCA 10.4891454537599 9.67821523754361 0.810930216216329 CGGTCACCAGGTGACAGCA:3,CTGTCACCAGGTGACAGCA:3 001110 143.165586767693 70.7945140578768 133.691554969064 72.37108 REF 18 14074373 14074391 1 0.0395919909331318 TGGCCAGCAGGGAGTGATG TGGCCAGCACGGAGTGATG 8.38534193265525 3.79022208252066 4.59511985013459 TGGCCAGCAGGGAGTGATG:5,TGGCCAGCACGGAGTGATG:1 001000 55.644437080011 20.7264090217149 90.027697514174 NA REF 18 29321298 29321316 1 0.0395919909331318 CCTCCACTAGATGGCGCTG CCTCCACTAGATTGCGCTG 13.7980494756506 9.21308199698003 4.58496747867057 CCTCCACTAGATGGCGCTG:5,CCTCCACTAGATTGCGCTG:1 000100 0 106.440935775069 148.843945964641 NA REF 18 39632282 39632300 1 0.661428031734038 TTTCCACTAGAGGGTGCTC TTTCCACTAAAGGGTGCTC 12.0437928401319 7.44867298999728 4.59511985013459 TTTCCACTAGAGGGTGCTC:4,TTTCCACTAAAGGGTGCTC:2 100010 0 21.870867872924 11.2948873951811 NA REF 18 49936307 49936325 -1 0.596297695504345 GAACCACCAGAGGGTGCCC GAATCACCAGAGGGTGCCC 10.8695749549338 7.77853250157546 3.09104245335832 GAACCACCAGAGGGTGCCC:4,GAATCACCAGAGGGTGCCC:2 001010 23.1928368236996 0 11.2948873951811 NA REF 18 56724620 56724638 -1 0 CAGCCACATGGGGGCGCTC CAGCCACATGGGGACGCTC 10.7026061956106 8.05171440834836 2.65089178726226 CAGCCACATGGGGGCGCTC:4,CAGCCACATGGGGACGCTC:2 000101 174.537635950038 136.561852699605 147.721013192649 NA REF 19 862006 862024 1 0.0329429542878731 GGGCCTGCAGAGGGAGCGC GGGCCTGCAGAGGGAGCGG 8.6783882247863 9.04995178121879 -0.371563556432482 GGGCCTGCAGAGGGAGCGC:3,GGGCCTGCAGAGGGAGCGG:3 001110 37.9742441089607 0 11.2948873951811 37.97424 ALT 19 1929477 1929495 1 0 CGGCCGCCAGAGGGCGACC CCGCCGCCAGAGGGCGACC 11.8569258053374 10.8228520378069 1.03407376753054 CGGCCGCCAGAGGGCGACC:5,CCGCCGCCAGAGGGCGACC:1 001000 326.531858990796 300.479667173937 336.386889037655 NA REF 19 4352760 4352778 -1 0.0345296562145825 TGACCACTAGAGGGAGGGA TGACCACTAGAGGGAAGGA 12.6724230626641 12.3606434386332 0.311779624030841 TGACCACTAGAGGGAGGGA:4,TGACCACTAGAGGGAAGGA:2 101000 288.651841539138 218.806649263693 314.668304757592 NA ALT 19 6733532 6733550 1 0 TGGCCTGCAGGGGGCGCTC TGGCCTGCAGGGGCCGCTC 14.728488135048 10.2858368785577 4.44265125649031 TGGCCTGCAGGGGGCGCTC:5,TGGCCTGCAGGGGCCGCTC:1 001000 39.1102928318866 0 100.400929343829 NA REF 19 12943620 12943638 1 0.533811862485833 CGTCCAGCAGGGGTCGCTG CGTCCAGCAGGGGTCGCTC 13.1986488387115 12.8270852822791 0.371563556432482 CGTCCAGCAGGGGTCGCTG:5,CGTCCAGCAGGGGTCGCTC:1 000100 390.194558321956 353.473959727658 386.343282324872 NA REF 19 16032679 16032697 -1 0.0184359652436721 AGGCCAGCAGGGGATGGTT AGGCCAGCAGGGGATGGTT 8.46357929815098 9.62673010795666 -1.16315080980568 CGGCCAGCAGGGGATGGTT:4,AGGCCAGCAGGGGATGGTT:2 001111 0 10.1814919332079 11.2948873951811 -10.73819 REF 19 17316246 17316264 1 0.131469588213071 CAGCCAGTAGGGGGCGGCT CAGCCAGCAGGGGGCGGCT 13.3143999332791 13.581028596533 -0.266628663253947 CAGCCAGTAGGGGGCGGCT:5,CAGCCAGCAGGGGGCGGCT:1 001000 186.385979084887 144.491190164659 211.444076205854 NA ALT 19 18572831 18572849 -1 0.0649036645258784 TGGGCAGCAGGTGGCGCTC TGGGCAGCAGGTGGCGCTC 12.6397472902199 12.327967666189 0.311779624030841 TGGGCAGCAGGTGGCACTC:3,TGGGCAGCAGGTGGCGCTC:3 011001 414.945853419836 399.951839546611 363.092650907983 NA REF 19 38042813 38042831 -1 0.0395919909331318 GGACCACAAGAGGGCGCAT GGACCACAAGAGGGCGCGT 10.6747922321492 10.1892844163675 0.4855078157817 GGACCACAAGAGGGCGCAT:5,GGACCACAAGAGGGCGCGT:1 000010 48.3542211941836 79.1973160673877 65.6581448559236 NA REF 19 41076735 41076753 1 0.287193048734416 CCTCCAGCAGGTGGCGGTA CCTCCAGCAGGTGGCGGTA 14.1043319283991 9.70988277372662 4.39444915467244 CCTCCAGCAGGTGGGGGTA:3,CCTCCAGCAGGTGGCGGTA:3 001110 140.086293460993 0 110.826891498541 140.08629 REF 19 42205789 42205807 -1 0.0582546278806196 CGCCCACTAGAGGACGCCA CGCCCACTAGAGGACGCTA 11.667086671342 11.8959282437708 -0.228841572428848 CGCCCACTAGAGGACGCCA:4,CGCCCACTAGAGGACGCTA:2 010001 160.318199279179 95.820138520186 94.9828995159411 NA REF 19 46513172 46513190 1 0 TGGCCACAAGGGGGCGCCC TGGCCACAAGGGGGCGCCC 15.6757947702777 15.2793794976894 0.396415272588246 TGGCCACAAGGTGGCGCCC:3,TGGCCACAAGGGGGCGCCC:3 010011 220.748193847862 183.252549966832 259.709208010414 -76.45666 REF 19 51925346 51925364 1 0 CCGCCCCCAGGGGGCGCTC CCGCCACCAGGGGGCGCTC 11.3950672697972 15.7895164244696 -4.39444915467244 CCGCCCCCAGGGGGCGCTC:4,CCGCCACCAGGGGGCGCTC:2 100001 509.918258255155 595.069067602562 575.752107987567 NA REF 20 719836 719854 -1 0.661428031734038 AGGCCAGTAGGTGGTGGTG AGGCCAGTAGGTGGTGGTG 12.0269635103295 11.8038199590153 0.223143551314211 GGGCCAGTAGGTGGTGGTG:4,AGGCCAGTAGGTGGTGGTG:2 111010 190.285970909178 252.249064832279 256.121727813347 NA REF 20 2668801 2668819 1 0.360936909709105 GGGCCTCCGGGGGGCGCTA GGGCCTCCGGGAGGCGCTA 10.9875839975328 8.77201028152835 2.21557371600442 GGGCCTCCGGGGGGCGCTA:5,GGGCCTCCGGGAGGCGCTA:1 100000 141.803983854011 123.512709710763 91.2851146767147 NA REF 20 4270703 4270721 1 0 TCTCCAGCAGGGGACGCCA TCTCCAGCAGGGGATGCCA 12.5112323328606 10.0626933272434 2.44853900561712 TCTCCAGCAGGGGACGCCA:4,TCTCCAGCAGGGGATGCCA:2 011000 22.273266538715 10.5159111676484 76.9818000612881 NA REF 20 5984156 5984174 -1 0.0395919909331318 TGGCCCCTAGAGGGTAGTA TGGCCCCTAGAGGGTAGTA 9.67679034608165 8.86586012986532 0.810930216216329 TTGCCCCTAGAGGGTAGTA:5,TGGCCCCTAGAGGGTAGTA:1 111101 22.4350306760408 43.0818918629462 47.2943299448265 NA REF 20 8703143 8703161 -1 0.661428031734038 TTGCCACTAGATGGCAGAA TTGCCACTAGATGGCACAA 14.0931927411099 14.5371241300459 -0.44393138893596 TTGCCACTAGATGGCAGAA:3,TTGCCACTAGATGGCACAA:3 110100 106.321937461267 113.265666114977 144.099649307704 37.77771 ALT 20 9893677 9893695 -1 0.797431054023423 TGGCCGACAGGTGGAGCAC TGGCAGACAGGTGGAGCAC 8.53498020866587 3.93986035853128 4.59511985013459 TGGCCGACAGGTGGAGCAC:4,TGGCAGACAGGTGGAGCAC:2 001001 108.825796544295 138.857324566424 116.815860538503 NA REF 20 13283460 13283478 -1 0.60173781639592 CAGCCACTAGAGGGCCGTG CAGCCACTAGAGGGCCGTG 11.0267348012325 8.88666863773627 2.14006616349627 CAGCCACTAGAGGGCCTTG:3,CAGCCACTAGAGGGCCGTG:3 100011 245.124561008377 189.898182191095 189.793574339271 0.104610000000008 REF 20 37419277 37419295 -1 0.797431054023423 TGGCCACCAAGTGGCAGTA TGGCCACCAAGTGGCAGTA 12.3110885193032 16.9062083694378 -4.59511985013459 TGGCCACCAGGTGGCAGTA:4,TGGCCACCAAGTGGCAGTA:2 101011 98.4475924368037 110.896537373984 194.414033928749 NA REF 20 37554771 37554789 1 0.326256139025312 CGACCGGCAGGGGGCGCGC CGACCGGCAGTGGGCGCGC 11.7629449026169 7.63581051757182 4.12713438504509 CGACCGGCAGGGGGCGCGC:5,CGACCGGCAGTGGGCGCGC:1 000010 259.981382024367 299.018155282873 227.326573753857 NA REF 20 43312353 43312371 -1 0.145296562145825 TGCCCACTGGAGGGCAGCA TGCCCACTGGACGGCAGCA 10.8622494162325 6.854916231 4.00733318523247 TGCCCACTGGAGGGCAGCA:5,TGCCCACTGGACGGCAGCA:1 100000 76.2040254974662 205.547668788928 178.31131918303 NA REF 20 45834495 45834513 1 0.430525122780506 TGGCCACCAGATAGCGAGC TGGCCACCAGATGGCGAGC 8.29446264251455 12.8794301211851 -4.58496747867057 TGGCCACCAGATAGCGAGC:4,TGGCCACCAGATGGCGAGC:2 100001 323.789741781909 125.259447849463 305.220254511819 NA REF 20 46415410 46415428 1 0.0395919909331318 TGGACTCAAGGGGGTGCTG TGGACTCAAGGGGGTGCTG 9.05021948659331 8.01614571906278 1.03407376753054 TCGACTCAAGGGGGTGCTG:3,TGGACTCAAGGGGGTGCTG:3 011010 56.5108507110447 101.245022306477 62.543863931946 NA REF 21 22372074 22372092 1 0.533811862485833 GGTCCAGCAGGGGGTGGTA GGTCCAGCAGGGGGTGGTA 11.6999876017808 7.69265441654835 4.00733318523247 GGTCCAGCAGGCGGTGGTA:4,GGTCCAGCAGGGGGTGGTA:2 111100 0 61.4774678781386 64.4907178848466 33.751985 REF 21 34199084 34199102 -1 0.145296562145825 TCACCAGTAGGTGGAGGAC TCACCGGTAGGTGGAGGAC 11.0056758524614 8.55713684684427 2.44853900561712 TCACCAGTAGGTGGAGGAC:5,TCACCGGTAGGTGGAGGAC:1 010000 38.818208086343 100.012860770716 72.9990542491187 NA REF 21 38955056 38955074 -1 0.343785417453721 TGACCACTAGGTGGGACAT TAACCACTAGGTGGGACAT 9.01955840567494 8.10326767380079 0.916290731874156 TGACCACTAGGTGGGACAT:4,TAACCACTAGGTGGGACAT:2 001010 87.087771621147 53.8377074426074 48.8106734388896 NA REF 21 44238529 44238547 -1 0 ATGCCACCAGGGGGCCCAC ATGCCACCAGGGGGCCCAC 9.60491719878626 9.08870072638539 0.516216472400867 ATGCCACCAGAGGGCCCAC:3,ATGCCACCAGGGGGCCCAC:3 011010 132.581458420283 138.459168110482 153.918662857705 NA REF 22 19132372 19132390 1 0.94030978466188 TGAACACGAGGGGGTGCTG TGAACACGTGGGGGTGCTG 9.80878171729233 5.96932940469902 3.83945231259331 TGAACACGAGGGGGTGCTG:5,TGAACACGTGGGGGTGCTG:1 100000 90.027697514174 198.213036152863 213.642467880157 NA REF 22 19949951 19949969 1 0.0787306384586324 CAAACACAAGGGGGCGATG CGAACACAAGGGGGCGATG 9.99714428954488 10.913435021419 -0.916290731874156 CAAACACAAGGGGGCGATG:4,CGAACACAAGGGGGCGATG:2 001010 126.311814526734 158.825366368513 108.098226276976 NA REF 22 20772593 20772611 1 0.126407253494522 CAGCCGCCAGATGGCAGCA CAGCCGCCAGATGGCAGCA 12.3500334844884 14.7985724901055 -2.44853900561712 CAGCCACCAGATGGCAGCA:4,CAGCCGCCAGATGGCAGCA:2 011110 323.286705755348 326.183057167694 351.432072161129 NA REF 22 21052004 21052022 -1 0 CAGCCACCTGAGGGCGCCC CAGCCACCCGAGGGCGCCC 11.322789102703 10.629641922143 0.693147180559944 CAGCCACCTGAGGGCGCCC:4,CAGCCACCCGAGGGCGCCC:2 001001 124.311772483117 100.814930497865 132.927988716031 NA REF 22 22763817 22763835 1 0 TGGACACTAGAGGGCACTT TGGACACTAGAGGGCACGT 12.2857023853668 10.5809542931284 1.70474809223843 TGGACACTAGAGGGCACTT:5,TGGACACTAGAGGGCACGT:1 000001 193.806661947091 60.6377029179601 198.378477794761 NA REF 22 23152641 23152659 1 0 CCACCAGCAAGGGGCAGCA CCACCAGCAAGGGGCAGCA 10.090943157776 14.6860630079105 -4.59511985013459 CCACCAGCAGGGGGCAGCA:5,CCACCAGCAAGGGGCAGCA:1 111110 181.528156462863 207.366174548307 235.770560383001 NA REF 22 25164953 25164971 1 0.0736683037400831 GAGCCGCAAGGTGGTGCTA GAGCCGCAAGGTGGTGCTA 8.65072822362581 7.77525948627191 0.875468737353899 GAGCCGCGAGGTGGTGCTA:3,GAGCCGCAAGGTGGTGCTA:3 011010 118.993437290581 124.940203971312 102.158752380659 NA REF 22 35340019 35340037 1 0.43203626747261 TGTCCAGCAGAGGGTGTCA TGTCCAGCAGAGGGTGTCA 10.6474448572031 9.65704615317527 0.990398704027877 TGTCCAGCAGAGGGTGTAA:4,TGTCCAGCAGAGGGTGTCA:2 010111 25.2157145983358 0 11.2948873951811 NA REF 22 36682706 36682724 -1 0.059841329807329 CGGCCAGCAGGTGGCAGCG CGGCCAGCAGGTGGCAGCA 15.3646607925465 15.7815545964783 -0.416893803931787 CGGCCAGCAGGTGGCAGCG:5,CGGCCAGCAGGTGGCAGCA:1 000100 354.406553115672 352.189501192251 337.517284818988 NA REF 22 42062822 42062840 1 0.0184359652436721 CATCCGCCAGGTGGCGACA CATCCGCCAGGTGGCGACA 10.6651235366317 11.1114106392601 -0.446287102628418 TATCCGCCAGGTGGCGACA:5,CATCCGCCAGGTGGCGACA:1 110111 551.139548140115 538.592451240518 549.488887926402 NA REF 22 45216668 45216686 1 0.730336229693993 CGTCCACTAGGGGGAGCCA TGTCCACTAGGGGGAGCCA 13.9362533377991 14.3825404404275 -0.446287102628419 CGTCCACTAGGGGGAGCCA:4,TGTCCACTAGGGGGAGCCA:2 010100 265.595919279277 253.418200982094 247.037699432309 NA REF 22 45497894 45497912 1 0 CTGCCACCGGGTGGCGCAA CTGCCACCGGGCGGCGCAA 12.0391566550697 8.42823874242552 3.61091791264422 CTGCCACCGGGTGGCGCAA:4,CTGCCACCGGGCGGCGCAA:2 001010 81.6404041448874 57.4923356676523 64.8889468102959 NA RE