Additional data file 1
The F-box protein family
Edward T Kipreos* and Michele Pagano†
Addresses: *Department of Cellular Biology, University of Georgia, Athens, GA 30602, USA. †Department of Pathology, New York University School of Medicine, New York, NY 10016, USA. E-mail: paganm02@med.nyu.edu; ekipreos@cb.uga.edu
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The C. elegans F-box proteins with FTH/DUF38, Pfam-B45, or other motifs

Proteins with FTH/DUF38 motifs (135)
B0391.6
B0511.3
C02H6.2
C06C3.9
C06H5.1
C06H5.2
C08E3.10
C08E3.5
C08E3.6
C08E3.7
C08E3.8
C08F11.5
C17B7.11
C25D7.4
C31C9.3
C31C9.4
C33E10.2
C36C9.3
C38D9.1
C38D9.6
C38D9.7
C38D9.9
C39B5.4
C39B5.7
C39B5.8
C39B5.9
C47B2.1
C52E2.c
CTEL54X.1
D1025.3
F09C3.4
F09C6.2
F09C6.6
F10A3.2
F14D2.8
F14H3.7
F23D12.2
F28F8.4
F31E9.1
F31E9.3
F35E12.3
F36G9.14
F42G2.4
F44E7.6
F44G3.8
F45C12.8 
F47H4.2
F47H4.6
F47H4.7
F47H4.8
F47H4.9
F52D2.1
F52D2.10
F52D2.8
F54B8.3
F54D10.6
F56C3.2
F57G4.4
F57G4.8
F58E2.3
F59A1.7
H03G16.4
K03D7.7
M162.8
R08A2.4
R09B5.1
R10E8.6
T05H4.2
T06C12.5
T06E6.3
T06E6.5
T08E11.1
T08E11.7
T09F5.11
T12B5.1
T12B5.10
T12B5.11
T12B5.12
T12B5.2
T12B5.3
T12B5.4
T12B5.6
T12B5.8
T13F3.5
T20H9.5
T20H9.5
T24C2.4
T28A11.21
T28C12.3
W05F2.5
Y102A5C.1
Y102A5C.14
Y102A5C.19
Y102A5C.3
Y102A5C.8
Y113G7B.1
Y113G7B.3
Y113G7B.4
Y113G7B.5 = FOG-2
Y113G7B.6
Y113G7B.7
Y18D10A.18
Y20C6A.1
Y36E3A.1
Y37H2A.4
Y37H2A.5
Y37H2A.6
Y37H2A.7
Y37H2C.3
Y38A10A.4
Y38H6C.11
Y45F10C.3
Y51A2A.9
Y53C10A.7
Y53C10A.8
Y59A8B.u
Y59E1A.b
Y6G8.2
Y75B8A.21
ZC47.1
ZC47.10
ZC47.12
ZC47.13
ZC47.14
ZC47.2
ZC47.3A
ZC47.3B
ZC47.4
ZC47.5
ZC47.6
ZC47.7
ZC47.9
ZC513.10
ZK1290.9
ZK250.5

Proteins with Pfam-B45 motifs (56)*
C08F1.3
C08F8.5
C16C4.6
C24H12.1
C24H12.11
C33C12.5
C33E10.1
C33F10.8
C41H7.2
E04A4.1
F07E5.2
F08D12.10
F08D12.11
F08D12.6
F08D12.8
F08D12.9
F09C3.3
F29A7.1
F29G9.7
F30B5.5
F36H5.5
F36H5.9
F38H4.2
F40F4.1
F45C12.14
F45C12.5
F49B2.1
F49B2.2
K05F6.2
K05F6.4
K05F6.5
K05F6.9
M01D1.7
M01D1.8
M01D1.9
M01D7.1
M117.5
R08C7.9
R17.1
T02G6.5
T04B8.2
T04D1.2
T08E11.6
T16A1.8
T17A3.3
T17A3.4
T17A3.7
T26H2.1
T26H2.2
T26H2.3
T26H2.4
T27E9.8
W08F4.2
ZC204.10
ZC204.8
ZC204.9

*Because of an inability to search directly for Pfam-B motifs, some F-box/Pfam-B45 proteins may not have been identified and instead would be listed in the other two F-box protein categories.


Proteins with other/no motifs (129)
B0294.3
C05B5.5
C10E2.2
C14B1.3
C17C3.6
C17F4.5
C18D4.8
C24H12.10
C24H12.7
C24H12.8
C26E6.5
C27F2.7
C30A5.1
C31C9.5
C32B5.15
C33E10.8
C38D9.8
C43D7.2
C43D7.6
C43D7.8
C44B9.5
C44C8.1
C44C8.3
C44C8.4
C47D12.4
C47F8.1
C53A3.1
C56G7.2
DY3.6
EEED8.10
F07E5.1
F08F3.6
F10A3.3
F15A4.2
F16B4.2
F21D9.1
F21D9.6
F22E5.16
F22G12.3
F23D12.4
F23F12.4
F25E5.5
F31D5.6
F31E9.4
F34D6.1
F35E2.2
F35E2.8
F36H5.5
F36H5.8
F37D6.4
F40G9.9
F43C9.1
F48C1.2
F49B2.4
F53C3.2
F54D5.9
F54H12.5
F55C9.1
F55C9.10
F55C9.11
F55C9.4
F55C9.7
F55C9.8
F55C9.9
F56A8.5
F56G4.3 = PES-2
F58E1.14
F58E1.2
F58E1.3
F58E1.5
F58E1.9
F58H7.7
F59B2.8
F59B2.9
H02I12.2
K02A6.3
K04A8.6
K04C2.1
K05F6.8
K06A9.2
K06H7.2
K08C7.7
K08C9.5
R03H10.1
R05H11.1
R13H4.5
T05B11.1
T05F1.11
T07E3.4
T08A9.4
T08A9.6
T10C6.10
T10C6.7
T10C6.8
T10E9.1
T14G8.2
T22G5.3
T25D1.3
T26E3.5
T27A1.3
T27F6.8
T28B11.1
T28B4.1
W03D2.2
W03G1.9
W04A8.5
W10D9.2
Y102A5C.10
Y102A5C.12
Y106G6H.10
Y106G6H.9
Y113G7B.8
Y26E6A.2
Y38H6C.10
Y39A1A.16
Y40B1B.3
Y46G5A.6
Y46G5A.7
Y46G5A.8
Y47H10A.2
Y47H9C.11
Y56A3A.10
Y56A3A.14
Y56A3A.15
Y63D3A.1
Y63D3A.2
Y63D3A.9
Y8A9A.5
ZK328.6