AraRINGs-Table
Edited set of Arabidopsis RING finger domain proteins

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446 RING domains picked up in Arabidopsis by InterPro analysis (version 3.2) were manually curated and completed, if applicable. The original starting set of 446 domains can be found here. False positives(i.e. PHD domains, partial domains, cysteine rich domains, etc.) were eliminated from the set. See a list of proteins with false positive domains and the reason for their rejection here.

A graphic presentation of the genomic locations of RING domain proteins in the genome can be found here.

Additional domains in the RING proteins predicted by InterPro analysis can be found here.

According to their zinc ligation scheme, we classified the domains into RING-HC domains (all metal ligands cysteine or histidine, metal ligand 5 cysteine), RING-H2 domains (all metal ligands cysteine or histidine, metal ligand 5 histidine) or RING domain variants (one metal ligand substituted or missing).

The resulting set was subject to single linkage cluster analysis based on the similarity between the RING finger domains only, i.e. not based on full length similarity. However, proteins in one cluster frequently also display significant similarity outside the RING domain. The corresponding ClustalW alignments can be accessed via the respective links. Clusters are presented based on an E-value cut-off (threshold) = 1e-15.

The set was also classified with respect to more stringent criteria. These were defined according to recent structural data that allow for a better discrimination between LIM domains, PHD domains and RING domains. The different stringent patterns allow a classification of the domains in terms of their likeliness to form a RING domain type cross brace structure, i.e. domains that are positive for pattern Stringent 4 are highly likely to form a RING type structure, while domains that fail to test positive for Stringent 1 are questionable.

The stringent motifs are:

Stringent 1: [CT]-X2-C-X9,39-[CT]-X1,3-H-X2,3-[CH]-X2-C-X2,46-[KRCHDESTQNGPLVIMA]-X-C-X2-[CD]

Stringent 2: [CT]-X2-C-X9,39-[CT]-X1,3-H-X1,2-[WFYLVIMAST]-[CH]-X2-C-[WFYLVIMAST]-X1,45-[KRCHDESTQNGPLVIMA]-X-C-X2-[CD]

Stringent 3: [CT]-X2-C-X9,39-[CT]-X1,3-H-X1,2-[WFYLVIMAST]-[CH]-X2-C-[WFYLVIMA]-X1,45-[KRCHDESTQNGPLVIMA]-X-C-X2-[CD]

Stringent 4: [CT]-X2-C-X9,39-[CT]-X1,3-H-X1,2-[WFYLVIMAST]-[CH]-X2-C-[WFYLVIMA]-X1,45-[KRCHDESTQNGP]-X-C-X2-[CD]

The metal ligands are marked in red. Note that substitutions that have been demonstrated to be functionally equivalent (i.e threonine at metal ligands 1 or 3, histidine at metal ligand 5, aspartate at metal ligand 8) have been included.

Total number of motifs                               = 387
Total number of proteins                             = 374
Number of motif clusters (2 or more motifs)          = 54
Number of unique motifs                              = 92
 
Find a list of proteins with more than one RING motif here.

RING finger domains
     (1) RING-HC domains (118 domains)
     (2) RING-H2 domains (215 domains)
Variant RING finger domains
     (3) RING-HC, metal ligand positions 6 or 7 substituted or missing (41 domains)
     (4) RING-H2, metal ligand position 7 substituted or missing (2 domains)
     (5) Metal ligand positions 4 or 5 substituted or missing (9 domains)
     (6) metal ligand position 2 substituted or missing (2 domains)


RING finger domains

(1) RING-HC domains: 118 domains in 111 proteins
 

Cluster 1.1

8 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g19310 CNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSK-------------DCPVCK YES YES YES YES
At1g74990 CNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKS-------------NHCPVCK YES YES YES YES
At2g23780 CNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQ-------------ECPVCK YES YES YES YES
At2g42030 CYICLDLSKDPVVTNCGHLYCWSCLYQWLQVSEAK--------------ECPVCK YES YES YES YES
At3g58030 CNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAK--------------ECPVCK YES YES YES YES
At4g03510 RMA1 CNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHR-----QCPVCK YES YES YES YES ubiquitin ligase activity (Matsuda et al., 2001)
At4g27470 CNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNN------CPVCK YES YES YES YES
At4g28270 CNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCK YES YES YES YES
*  *           * *  *  *                          *  *

Cluster 1.2

6 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g62370 CCVCMGREKGAAFIPCGHTYCRVCSREIWMNRGTCPLCN YES YES NO NO
At3g07120 CCVCMVKIKGASFTPCGHTFCKLCSKELMAQKGHCPVCS YES YES NO NO
At3g25030 CCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCN YES YES NO NO
At4g03960 CCVCMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLCN YES YES NO NO
At4g13100 CCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCN YES YES NO NO
At4g22250 CCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCN YES YES NO NO
*  *           * *  *  *          *  *

Cluster 1.3

6 sequences: see cluster 1.4 for 2nd domain in subgroup
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g57800 CSFCMQSLQKPVSVRVLFALALMLVWFLESTPCGHNACLKCFLKW-MGQGHRSCGTCR YES YES YES YES 2nd domain in protein
At1g57820 CSFCMQLPERPVTK-----------------PCGHNACLKCFEKW-MGQGKRTCGKCR YES YES YES YES 2nd domain in protein
At1g66040 CSICIQLPERPVTT-----------------PCGHNFCLKCFEKWAVGQGKLTCMICR YES YES YES YES 2nd domain in protein
At1g66050 CSICIQLPERPVTT-----------------PCGHNFCLKCFEKWAVGQGKLTCMICR YES YES YES YES 2nd domain in protein
At4g08590 CSLCNQLPDRPVTI-----------------LCGHNFCLKCFDKW-IDQGNQICATCR YES YES YES YES
At5g39550 CSICIQLPERPITT-----------------PCGHNFCLKCFEKWAVGQGKLTCMICR YES YES YES YES 2nd domain in protein
*  *                            * *  *  *            *  *

Cluster 1.4

5 sequences: 2nd domain of subgroup from cluster 1.3
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g57800 CQICQKVMTNPVTTPCAHNFCKACLESKFAGTALVRERGSGGRKLRSQKSVMKCPCC YES YES YES NO 2nd domain in protein
At1g57820 CQICQQVLTLPVTTPCAHNFCKACLEAKFAGKTLVRERSTGGRTLRSRKNVLNCPCC YES YES YES NO 2nd domain in protein
At1g66040 CQICRKVLSLPVTTPCAHNFCKACLEAKFAGITQLRDRSNGVRKLRAKKNIMTCPCC YES YES YES NO 2nd domain in protein
At1g66050 CQICRKVLSLPVTTPCAHNFCKACLEAKFAGITQLRDRSNGVRKLRAKKNIMTCPCC YES YES YES NO 2nd domain in protein
At5g39550 CQICREVLSLPVTTPCAHNFCKACLEAKFAGITQLRERSNGGRKLRAKKNIMTCPCC YES YES YES NO 2nd domain in protein
*  *           * *  *  *                             *  *

Cluster 1.5

5 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At3g06140 CVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICR YES YES YES YES
At3g09770 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICR YES YES YES YES
At3g53410 CVICLSEPRDTTVLPCRHMCMCSGCAKLLRFQTNLCPICR YES YES YES YES
At5g03200 CVVCLSEPRDTTVLPCRHMCMCSGCAKALRFQTNLCPVCR YES YES YES YES
At5g19080 CVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICR YES YES YES YES
*  *           * *   *  *          *  *

Cluster 1.6

4 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g24440 CGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCR YES YES YES YES
At3g47160 CGICMEMNNMVVLPNCTHSLCIKCYRDWHGRSESCPFCR YES YES YES YES pot. RNA binding prot.
At5g01520 CGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSCPFCR YES YES YES YES
At5g58790 CGICMEMNSKVVLPNCTHSLCIKCYRDWRGRSQSCPFCR YES YES YES YES
*  *           * *  *  *          *  *

Cluster 1.7

4 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g66620 CPICCHALTSPIFQCDNGHIACSSCCTKLRNKCPSC YES NO NO NO
At1g66630 CPICYHKLGAPIYQCDNGHIACSSCCKKVKYKCPYC NO NO NO NO likely not a RING
At5g37870 CPICYQALKIPVFQCGNGHLACSSCCPKLRNKCPAC YES NO NO NO
At5g37910 CPICCEALTSPIFQCDNGHLACGSCCPKLSNKCPAC YES NO NO NO
*  *          *   *  *  *       *  *

Cluster 1.8

4 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At2g41980 CPVCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCR YES NO NO NO
At3g58040 CPVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCR YES NO NO NO
At3g61790 CPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCR YES NO NO NO seven in absentia-like
At4g27880 CPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCR YES NO NO NO
*  *          *   *  *  *       *  *

Cluster 1.9

3 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g69330 CPICWESFNIVENVPYVLWCGHTLCQNCVFGLQSAVL-RLSSQDIRIPFFVSCPWCQ YES YES YES NO
At1g74370 CPICWESFNVVENVPYVLWCGHTICKYCLLGLQRAIVIKSSALPFQLPFFVACPWCN YES YES YES NO
At3g29270 CPICWESFNIVENVPYVLWCGHTMCKNCILGLQWAIV-KLPTHPVQLPLFISCPWCN YES YES YES NO
*  *               * *  *  *                        *  *

Cluster 1.10

3 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g01350 CFICREPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCN YES YES YES YES
At4g01020 CSICQNPFLDPVVTNCNHYFCDKCALKHHTENDTCFVCN YES YES YES YES 2nd domain in protein
At5g06420 CFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCN YES YES YES YES
*  *           * *  *  *          *  *

Cluster 1.11

3 sequence:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g30860 CCVCDETQVEAVLYRCGHMCMCLKCANELHWSGGKCPIC YES YES YES YES
At2g34920 CCVCNETQVETLLYRCGHMCTCLRCANELQYNGGKCPIC YES YES YES YES
At5g44690 CSICFEMPIDSLLYRCGHMCTCLKCAHELQWSNMKCPIC YES YES YES NO
*  *           * *   *  *          *  *

Cluster 1.12

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At5g07270 CAVCLERTCTVAAEGCEHQLCVRCALYLCSSSNVPSVT-VGPPGSIPCPLCR YES YES YES NO
At5g57740 CAVCLERKCTVAADGCAHEFCTNCALYLSTTSITSSKTSNVTPGSVPCPLCR YES YES YES NO
*  *           * *  *  *                       *  *

Cluster 1.13

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g59560 CVVCLDQKYNTAFVECGHMCCCTPCSLQLRTCPLCR YES NO NO NO
At1g63900 CVICLEQEYNAVFVPCGHMCCCTACSSHLTSCPLCR YES NO NO NO
*  *           * *   *  *      *  *

Cluster 1.14

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g79110 CRNCGEEESCVLLLPCRHLCLCGVCGSSVHTCPICT YES NO NO NO
At3g12920 CRSCGKGEASVLLLPCRHMCLCSVCGSSLNTCPICK YES NO NO NO
*  *           * *   *  *      *  *

Cluster 1.15

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At5g22750 CPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCR YES YES YES YES
At5g43530 CPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPICR YES YES YES YES put. DNA repair protein
*  *           * *  *  *            *  *

Cluster 1.16

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g03370 CVMCLSEEMSVIFLPCAHQVLCFKCNQLHEKEGMMDCPSCR YES NO NO NO
At4g03000 CVMCLSEEMSVIFLPCAHQVLCSKCNQLHEKEAMEDCPSCR YES NO NO NO
*  *           * *   *  *           *  *

Cluster 1.17

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At3g01650 CPICLSNPKNMAFGCGHQTCCECGPDLKVCPICR YES NO NO NO
At5g14420 CPICLSNPKDMAFGCGHQTCCECGPDLQMCPICR YES NO NO NO
*  *          * *  *  *      *  *

Cluster 1.18

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g03770 CSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCR YES YES YES YES
At5g44280 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACR YES YES YES YES
*  *            * *  *  *           *  *

Cluster 1.19

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g32530 CIICMKDEVSVVFLPCAHQVVCGSCSDSFFASNNGGSKVTCPCCR YES YES NO NO
At2g35330 CLICMKDEVSVVFLPCAHQVVCASCSDSF----MGSGKATCPCCR YES YES NO NO
*  *           * *   *  *               *  *

Cluster 1.20

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g10650 CKMCNVKEVSVLIVPCRHLSLCKECDVFTKICPVCK YES NO NO NO apoptosis inhibitor-like
At1g60610 CKLCNVKNVSVLLVPCRHLSLCKDCDVFTGVCPVCQ YES NO NO NO
*  *           * *   *  *      *  *

Cluster 1.21

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At2g38190 CAICFDVPRDCFFLPCGHSVSCYECGTTMQEADGSCPICR YES NO NO NO
At5g01450 CAICYDAPRDCFFLSCGHCVACFQCGTRIAETSGFCPVCR YES NO NO NO
*  *           * *   *  *          *  *

Cluster 1.22

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At2g47090 CAVCAENLEWVGYGSCGHREVCSTCVVRLRFILNDRRCCICK YES YES YES YES
At3g62240 CAVCADNLEWVAYGSCGHREVCSTCVVRLRFVLDDPRCCICK YES YES YES YES
*  *           * *   *  *            *  *

Cluster 1.23

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At4g19700 CKRCGEREASVLVLPCRHLCLCTVCGGSALLRTCPVCD YES NO NO NO
At5g45100 CKRCGELTASVLVLPCRHLCLCTVCGSSALLRTCPVCD YES NO NO NO
*  *           * *   *  *        *  *

Cluster 1.24

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At3g23280 CAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCR NO NO NO NO likely not a RING
At4g14360 CVICVDAPSEAVCVPCGHVAGCISCLKEIENKKMGCPVCR YES NO NO NO ankyrin-like protein
*  *           * *   *  *          *  *

 

Unique RING-HC domains
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g05050 CFGCQQSLIGAGNKPVPCVTCRKCKHYFCLDCDIYIHESLHNCPGCE YES NO NO NO put. transcription factor
*  *                   * *  *  *          *  *
At1g05120 CGLCHDPAEDYVVTSCAHVFCKACLIGFSASLGKVTCPTCS YES YES YES NO
*  *           * *  *  *            *  *
At1g18660 CTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNKCPLCR YES YES YES YES
*  *           * *  *  *          *  *
At1g21650 CPVCLQSYDGESTVPRVLACGHTACEECLTNLPKKFPDTIRCPACT YES YES YES NO put. SecA-type plastid protein transport factor
*  *               * *  *  *             *  *
At1g32740 CKACREREATVVVLPCRHLSICPGCDRTALACPLC YES NO NO NO
*  *           * *   *  *      *  *
At1g55250 CGVCFDRPKEVVIVKCYHLFCQQCIQRSLEIRHRKCPGC YES YES YES YES
*  *           * *  *  *           *  *
At1g61620 CPSCKVTLTNTMSLVALSSCGHVFCKKCAEKFMPVDKVCLVCD YES YES YES YES
*  *               * *  *  *          *  *
At1g67180 CIICWTEFSSSRGILPCGHRFCYSCIQKWADRLVSERKKTTCPLCK YES YES YES YES
*  *            * *  *  *                *  *
At1g67800 CPVCLVSAKNMAFNCGHQTCAGCGEDLHVCPICR YES NO NO NO
*  *          * *  *  *      *  *
At1g68820 CRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICR YES NO NO NO
*  *           * *   *  *      *  *
At1g79380 CPICLTNRKDVAFSCGHMTCGDCGSKISNCPICR YES NO NO NO
*  *          * *  *  *      *  *
At1g79810 CPICQVDPAIPFIALPCQHRYCYYCIRTRCASAASFRCLRCN NO NO NO NO likely not a RING
*  *            * *  *  *            *  *
At2g22010 CCICYAGEANAMIAPCSHRSCYGCITRHLLNCQRC YES YES YES YES
*  *           * *  *  *       *  *
At2g25380 CVICLEETVADRMFFTDKCLHRYCFSCVKQTCVKCNGLFCIDCK YES YES YES YES
*  *              * *  *  *            *  *
At2g26350 CTLCLSTRQHPTATPCGHVFCWSCIMEWCNEKQECPLCR YES YES YES YES put. peroxisome membrane protein
*  *           * *  *  *          *  *
At2g28840 CCICFEQVCTIEVKDCGHQMCAQCTLALCCHNKPNPTTSTVTPPVCPFCR YES YES NO NO ankyrin repeat protein
*  *           * *  *  *                     *  *
At2g30580 CPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIESCPVCD YES YES YES YES
*  *            * *  *  *            *  *
At2g32950 COP1 CPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCS YES YES YES YES put. ubiquitin ligase (Osterlund et al., 2000)
*  *           * *  *  *          *  *
At2g39100 CPICLENLTERRSAAVITVCKHGYCLACIRKWSSFKRNCPLCN YES YES YES YES
*  *               * *  *  *          *  *
At2g40770 CPICHEILRNQKMVFQCGHSTCCNCFFAMTERKSVQETLQKWVMCPICR YES YES YES NO SNF2/SWI2-like protein
*  *            * *  *  *                   *  *
At2g44410 CNICLEKAEDPILTCCGHLFCWGCFYQLPLIYLNIKECPVCD YES YES YES YES
*  *           * *  *  *             *  *
At2g44950 CKACNDRPKEVVITKCYHLFCNPCVQKLTGTRQKKCPTCS YES YES YES YES
*  *           * *  *  *           *  *
At3g05250 CPICLGQFLRESYLDTCFHKFCFNCIKQWIKVVSSKASKQRSSVTCPLC YES YES YES NO
*  *            * *  *  *                    *  *
At3g05670 CGICLSEEDMRRLKGTLDCCSHYFCFTCIMEWSKVESRCPLCK YES YES YES YES
*  *               * *  *  *          *  *
At3g07200 CPICLCPFTQEVSTKCGHIFCKKCIKNALSLQAKCPTCR YES YES YES NO
*  *           * *  *  *          *  *
At3g24800 PRT1 CCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHCPIC YES YES YES YES N-end rule ubiquitin ligase (Potuschak et al., 1998), 2nd domain in prot.
*  *           * *  *  *            *  *
At3g24800 PRT1 CSACKELLVRPVVLNCGHVYCEGCVVDMAEESEKIKCQECN YES YES YES NO N-end rule ubiquitin ligase (Potuschak et al., 1998), 2nd domain in prot.
*  *           * *  *  *            *  *
At3g26730 CPICLEYPLCPQITSCGHIFCFPCILQYLLTGVDNHKVDCFKRCPLC YES YES YES YES
*  *           * *  *  *                   *  *
At3g27330 CAICLEICFEPSTTTCGHSFCKKCLRSAADKCGRKCPKCR YES YES YES YES
*  *           * *  *  *           *  *
At3g54360 CMLCQALLYESSRCVPCTHVFCKVCLTRFKDCPLC YES YES YES YES
*  *            * *  *  *      *  *
At4g01740 CNGCYKFKYGMLVCVEYECNHLICFNCATLPPVVKHRVDDHPLSLCYGEKASGICWCDIC YES YES YES YES
*  *              * *  *  *                             *  *
At4g17680 CRICRRKSATVMALPCQHLILCNGCDVGAVRVCPIC YES YES YES YES
*  *           * *   *  *       *  *
At4g21070 CPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCK YES YES YES NO
*  *           * *  *  *          *  *
At4g33940 CPICFGSFTVPCRGNCGHWYCGNCILQYWNYAAISRPCKCPMC YES YES YES YES
*  *           * *  *  *               *  *
At5g01160 CVRCDFPIAIYGRLIPCDHAFCLECARSDSICYLC YES YES YES YES
*  *            * *  *  *      *  *
At5g05130 CPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCR YES YES YES YES helicase-like protein
*  *           * *  *  *           *  *
At5g13530 CSVCHTRYNEDERVPLLLQCGHGFCKDCLSKMFSTSSDTTLTCPRCR YES YES YES NO ankyrin repeat protein
*  *               * *  *  *              *  *
At5g19430 CAICLSEIPLQETAMVKGCEHTYCVTCILRWASCKESPTCPQCK YES YES YES YES
*  *              * *  *  *            *  *
At5g23110 CQICQTKEVEVTIVPCGHVLCRHCSTSVSRCPFCR YES YES NO NO
*  *           * *  *  *      *  *
At5g47050 CRICRRRSATVLALPCRHLVMCTECDGSVRICPLC YES NO NO NO
*  *           * *   *  *      *  *
At5g63700 CYLCKKTPKLCCLCCSHAVCEGCVTHAEFIQLKGDKGLCNQC YES YES YES YES
*  *          * *  *  *               *  *

 
 

(2) RING-H2 domains: 215 domains in 214 proteins

Cluster 2.1

75 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g04360 CSVCLNEFQEDEKLRIIPN--------------------------------CCHVFHIDCIDIWLQGNAN-CPLCR YES YES YES NO
At1g20810 CAICLAEFSAGDELRVLPQ--------------------------------CGHGFHVACIDTWLGSHSS-CPSCR YES YES YES YES
At1g22500 CPVCLNEFEDDETLRLIPQ--------------------------------CCHVFHPGCIDAWLRSQTT-CPLCR YES YES YES YES
At1g23980 CAVCLCEFSEDDKLRLLPN--------------------------------CSHAFHIDCIDTWLLSNST-CPLCR YES YES YES YES
At1g28040 CPICLSEYASKETVRCMPE--------------------------------CDHCFHVQCIDEWLKIHSS-CPVCR YES YES YES YES
At1g32360 CSICLTEFMDDDTIRLIST--------------------------------CNHSFHTICIDLWFEGHKT-CPVCR YES YES YES YES
At1g33480 CSVCLGDYQPNDKLQQIPV--------------------------------CKHTFHMDCIDLWLTSHTT-CPLCR YES YES YES YES
At1g35330 CAICLNEFEDEETLRLMPP--------------------------------CSHAFHASCIDVWLSSRST-CPVCR YES YES YES YES
At1g49200 CVICLSDFVSGEQIRMLPK--------------------------------CHHGFHVRCIDKWLQQHLT-CPKCR YES YES YES YES
At1g49210 CVICLSDFVSGEQLRLLPK--------------------------------CNHGFHVRCIDKWLQHHLT-CPKCR YES YES YES YES
At1g49220 CVICLSDFVSGEQLRLLPK--------------------------------CNHGFHVRCIDKWLQQHLT-CPKCR YES YES YES YES
At1g49230 CAICLSEFVAEERVKLLPT--------------------------------CHHGFHVRCIDKWLSSHSS-CPTCR YES YES YES YES
At1g53820 CAVCLSDLVDGDKARVLPR--------------------------------CNHGFHVDCIDMWFQSHST-CPLCR YES YES YES YES
At1g72200 CSVCLNEFEDDETLRLIPK--------------------------------CCHVFHPGCIDAWLRSHTT-CPLCR YES YES YES YES
At1g72220 CPVCLNEFEEDESLRLLPK--------------------------------CNHAFHISCIDTWLSSHTN-CPLCR YES YES YES YES
At1g72310 ATL3 CSICLSELVKGDKARLLPK--------------------------------CNHSFHVECIDMWFQSHST-CPICR YES YES YES YES
At1g74410 CTICLQDIKTGEITRSLPK--------------------------------CDHTFHLVCVDKWLIRHGS-CPICR YES YES YES YES
At1g76410 CAICLTEFAAGDELRVLPQ--------------------------------CGHGFHVSCIDTWLGSHSS-CPSCR YES YES YES YES
At2g17460 CAICLTDFADGEEIRVLPL--------------------------------CGHSFHVECIDKWLVSRSS-CPSCR YES YES YES YES pseudogene
At2g17730 CSVCLQDFQLGETVRSLPH--------------------------------CHHMFHLPCIDNWLLRHGS-CPILT YES YES YES NO
At2g18650 CPVCLCEFETEDKLRLLPK--------------------------------CSHAFHVECIDTWLLSHST-CPLCR YES YES YES YES
At2g20030 CSVCLSKFEDVEILRLLPK--------------------------------CRHAFHIGCIDQWLEQHAT-CPLCR YES YES YES NO
At2g27940 CVICLSDFEEGETVKVIPH--------------------------------CGHVFHVDCVDTWLSSYVT-CPLCR YES YES YES NO
At2g34990 CAVCICEFEDHETLRLMPE--------------------------------CCHVFHADCVSVWLSDHST-CPLCR YES YES YES YES
At2g35000 CAVCLCEFEDDETLRLMPP--------------------------------CCHVFHADCVDVWLSEHST-CPLCR YES YES YES YES
At2g35420 CAICLSEFSDEDTVRLITV--------------------------------CRHPFHSNCIDLWFELHKT-CPVCR YES YES YES YES
At2g35910 CAICLGDYKGKHLLRQLPD--------------------------------CNHLFHLKCIDTWLRLNPT-CPVCR YES YES YES YES
At2g37580 CSVCLMVFTDSDELRQLSE--------------------------------CKHAFHVLCIETWLKDHPN-CPICR YES YES YES YES
At2g42350 CAVCLSLLEEKDNARMLPN--------------------------------CKHVFHVSCVDTWLTTQST-CPVCR YES YES YES YES
At2g42360 CAVCLSVLKEQDKARELPN--------------------------------CKHIFHVDCVDTWLTTCST-CPVCR YES YES YES YES
At2g46160 CSICLCEYKEAEMLRMMPE--------------------------------CKHYFHLCCLDAWLKLNGS-CPVCR YES YES YES YES
At2g47560 CSVCLSEFEEEDEGRLLPK--------------------------------CGHSFHVDCIDTWFRSRST-CPLCR YES YES YES YES
At3g03550 CSVCLSEFQENESLRLLPK--------------------------------CNHAFHVPCIDTWLKSHSN-CPLCR YES YES YES YES
At3g05200 ATL6 CAICLNEFEDDETLRLLPK--------------------------------CDHVFHPHCIDAWLEAHVT-CPVCR YES YES YES NO
At3g10910 CLICLGDFEDGEKVRVLPK--------------------------------CNHGFHVRCIDTWLLSRSS-CPTCR YES YES YES YES
At3g11110 CCICLGGFEEGEKMKVLPP--------------------------------CSHCYHCECVDRWLKTESS-CPLCR YES YES YES YES
At3g14320 CVVCLSELADGDKARVLPS--------------------------------CDHWFHVECIDSWLQSNST-CPICR YES YES YES YES
At3g16720 CAVCLSEFEESETGRVLPN--------------------------------CQHTFHVDCIDMWFHSHST-CPLCR YES YES YES YES
At3g18930 CAVCLLEFEEGDYVRTLPL--------------------------------CFHAFHLECIDEWLRSHPN-CPLCR YES YES YES YES
At3g19140 CVVCLSKFIDEDKARVLPS--------------------------------CNHCFHFDFTDTWLHSDYT-CPNCR NO NO NO NO likely not a RING
At3g48030 CAVCLNEFSDTDKLRLLPV--------------------------------CSHAFHLHCIDTWLLSNST-CPLCR YES YES YES YES
At3g60220 ATL4 CAVCLSKFEPEDQLRLLPL--------------------------------CCHAFHADCIDIWLVSNQT-CPLCR YES YES YES YES
At3g61550 CSICLCEYMEEEMLRMMPE--------------------------------CKHYFHVYCLDAWLKLNGS-CPVCR YES YES YES YES
At3g62690 ATL5 CSVCLSEFEEDDEGRVLPK--------------------------------CGHVFHVDCIDTWFRSRSS-CPLCR YES YES YES YES
At4g09100 CVVCLNEFKDDETLRLVPP--------------------------------CVHVFHADCVDIWLSHSST-CPICR YES YES YES YES
At4g09110 CAICLSEFVDKETLRWMPP--------------------------------CSHTFHANCIDVWLSSQST-CPACR YES YES YES YES
At4g09120 CAICLSEFEDQETLRWMPP--------------------------------CSHTFHANCIDVWLSSWST-CPVCR YES YES YES YES
At4g09130 CAICLCEFEDEEPLRWMPP--------------------------------CSHTFHANCIDEWLSSRST-CPVCR YES YES YES YES
At4g10150 CSVCLGDYQAEEKLQQMPS--------------------------------CGHTFHMECIDLWLTSHTT-CPLCR YES YES YES YES
At4g10160 CSVCLGDYQAEEKLQQMPS--------------------------------CGHTFHMECIDLWLTSHTT-CPLCR YES YES YES YES
At4g15970 CSVCLSEFKDNESGRVMPN--------------------------------CKHTFHVHCIDMWFHSHSS-CPLCR YES YES YES YES
At4g17910 CSICLGEFNEDESLRLLPK--------------------------------CNHTFHVVCIDRWLKSHSN-CPLCR YES YES YES YES
At4g17920 CAICLLEFDGDHVLRLLTT--------------------------------CYHVFHQECIDLWFESHRT-CPVCR YES YES YES YES
At4g28890 CSVCLSKFESVEILRLLPK--------------------------------CRHAFHIGCIDQWLEQHAT-CPLCR YES YES YES NO
At4g30400 CAVCLCEFETEDKLRLLPK--------------------------------CSHAFHMDCIDTWLLSHST-CPLCR YES YES YES YES
At4g35480 RHA3b CAICITEFSEGEEIRILPL--------------------------------CSHAFHVACIDKWLTSRSS-CPSCR YES YES YES YES
At4g35840 CSVCLQVFCSFQLKRNLNSPNAEPKGLVLDLLLCNFLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGS-CPMCR YES YES YES NO
At4g38140 CPICLVEFEAEDAVTHLPR--------------------------------CAHLFHINCIEPWLLRGHLTCPLCR YES YES YES NO
At4g40070 CAICLNELEDHETVRLLPI--------------------------------CNHLFHIDCIDTWLYSHAT-CPVCR YES YES YES NO
At5g01880 CAICLGEFADGERVRVLPP--------------------------------CNHSFHMSCIDTWLVSHSS-CPNCR YES YES YES YES
At5g05280 CLICLGDFVEGETVRVLPK--------------------------------CNHGFHVKCIDTWLLSHSS-CPTCR YES YES YES YES
At5g05810 CAVCLARFEPTEVLRLLPK--------------------------------CKHAFHVECVDTWLDAHST-CPLCR YES YES YES YES
At5g06490 CSICLADYKKMDMIRVLPD--------------------------------CNHLFHDNCVDPWLRLHPT-CPVCR YES YES YES YES
At5g07040 CSICLCDYEAREPVRCIPE--------------------------------CNHCFHTDCVDEWLRTSAT-CPLCR YES YES YES NO
At5g10380 CSVCLNEFEEDESLRLLPK--------------------------------CSHAFHLNCIDTWLLSHKN-CPLCR YES YES YES YES
At5g17600 CSVCLSEFEENESLRLLPK--------------------------------CNHAFHLPCIDTWLKSHSN-CPLCR YES YES YES YES
At5g27420 CAICLNEFEDDETLRLLPK--------------------------------CDHVFHPHCIGAWLQGHVT-CPVCR YES YES YES NO
At5g40250 CAVCLCEFSEKDKLRLLPM--------------------------------CSHAFHLNCIDTWLQSNST-CPLCR YES YES YES YES
At5g42200 CAVCLEDIESGQSTRLVPG--------------------------------CNHGFHQLCADTWLSNHTV-CPVCR YES YES YES YES
At5g43420 CSVCLSEFQDEEKLRIIPN--------------------------------CSHLFHIDCIDVWLQNNAN-CPLCR YES YES YES NO
At5g46650 CAICLLEFEEEHILLRLLTT-------------------------------CYHVFHQECIDQWLESNKT-CPVCR YES YES YES YES
At5g47610 CAICLSEFEQGESIQVLEK--------------------------------CQHGFHVKCIHKWLSTRSS-CPTCR YES YES YES YES
At5g57750 CAVCLREFTAEDELRLLPK--------------------------------CSHAFHVECIDTWLLTNST-CPLCR YES YES YES YES
At5g58580 CVICLGLWEAGDFGRKLRN--------------------------------CGHGFHVECIDMWLSSHST-CPLCR YES YES YES YES
At5g66070 CSVCLQDFQVGETVRSLPH--------------------------------CHHMFHLPCIDKWLRRHAS-CPLCR YES YES YES NO
*  *                                               * *  *  *           *  *

Cluster 2.2

26 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g14200 CAICLDEWSKGDVAAEMPCKHKFHSKCVEEWLGRHATCPMCR YES YES YES NO
At1g26800 CVICLEEWKSEETVKEMPCKHRFHGGCIEKWLGFHGSCPVCR YES YES YES YES
At1g55530 CSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCR YES YES YES YES
At1g60360 CTVCMEEFIVGGDATELPCKHIYHKDCIVPWLRLNNSCPICR YES YES YES YES
At1g68180 CAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICR YES YES YES YES
At2g03000 CVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCR YES YES YES YES
At2g39720 CAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCR YES YES YES YES
At2g40830 CPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCR YES YES YES YES
At2g44330 CAICREDFVVGESARRLPCNHLYHNDCIIPWLTSHNSCPLCR YES YES YES YES
At3g02340 CAVCKDEMLVEEKVRRLPCSHFYHGECIIPWLGIRNTCPVCR YES YES YES YES
At3g10810 CPVCQDQFEIGSDARKMPCKHIYHSECILPWLVQRNTCPVCR YES YES YES YES
At3g13430 CSVCLDDFEIGMEAKEMPCKHKFHSDCLLPWLELHSSCPVCR YES YES YES YES
At3g19950 CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCR YES YES YES YES
At3g30460 CAICREELAANERLSELPCRHYYHKECISNWLSNRNTCPLCR YES YES YES YES
At3g46620 CAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCR YES YES YES YES
At3g60080 CAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCR YES YES YES YES
At4g26400 CSICLDDFDKGSEAKEMPCKHKFHIRCIVPWLELHSSCPVCR YES YES YES YES
At5g01980 CAICKELFSLRNETTQLPCLHLYHAHCIVPWLSARNSCPLCR YES YES YES YES
At5g02750 CVICKEEMSEGRDVCEMPCQHFFHWKCILPWLSKKNTCPFCR YES YES YES YES
At5g08140 CAVCKDEMNIGNKAVQLPCNHKYHSECIVPWLKVRNTCPVCR YES YES YES YES
At5g15820 CAICKDEVVFKEKVKRLPCKHYYHGECIIPWLGIRNTCPVCR YES YES YES YES
At5g20910 AIP2 CCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR YES YES YES YES
At5g56340 CSVCLDDFEKGTEAKEMPCKHKFHVRCIVPWLELHSSCPVCR YES YES YES YES
At5g59550 CAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCR YES YES YES YES
At5g60820 CAVCKEEMIVGKEVAELPCRHKYHSECIVPWLGIRNTCPVCR YES YES YES YES
At5g64920 CIP8 CAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCR YES YES YES YES ubiquitin ligase activity (C. Hardtke, unpubl.)
*  *              * *  *  *          *  *

Cluster 2.3

11 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g17970 CSICQDEYEREDEVGELNCGHSFHVHCVKQWLSRKNACPVCK YES YES YES YES
At1g45180 CCVCQEEYKEEEEIGRLECGHDFHSQCIKEWLKQKNLCPICK YES YES YES YES
At1g53190 CTICQESFKNEEKIATLDCGHEYHAECLEKWLIVKNVCPICK YES YES YES YES
At1g73760 CIICQDEYEAKDEVGELRCGHRFHIDCVNQWLVRKNSCPVCK YES YES YES YES
At2g15530 CCICQEEYVEGDNLGTLKCGHEFHKDCIKQWVMIKNLCPICK YES YES YES YES
At3g15070 CTICQENYKNEDKIATLDCMHKYHAECLKKWLVIKNVCPICK YES YES YES YES
At4g31450 CSICQEEYTIGDEVGRLHCEHTYHVKCVQEWLRIKSWCPICK YES YES YES YES
At4g34040 CCVCQEEYAEGDDLGTLGCGHEFHTACVKQWLMLKNLCPICK YES YES YES YES
At5g10650 CSICQEEYVDGDELGTIPCQHMYHVSCVQQWLRMKNWCPICK YES YES YES YES
At5g24870 CSICQEEYVDGDEVGTLPCQHKYHVSCAQQWLRMKNWCPICK YES YES YES YES
At5g42940 CCVCQEEYTEGEDMGTLECGHEFHSQCIKEWLKQKNLCPICK YES YES YES YES
*  *              * *  *  *          *  *

Cluster 2.4

8 sequences:
(full length alignment of proteins in the cluster
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g12760 CCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCK YES YES YES NO
At1g63170 CCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCK YES YES YES NO
At1g68070 CCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLCK YES YES YES NO
At1g80400 CCICLTRYGDDEQVRELPCSHVFHVDCVDKWLKINATCPLCK YES YES YES NO
At3g61180 CSICLCAYEDGVELRELPCRHHFHSLCVDKWLRINATCPLCK YES YES YES NO
At4g11680 CCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCK YES YES YES YES
At4g26580 CCICLAKYKEKEEVRKLPCSHRFHLKCVDQWLRIISCCPLCK YES YES YES YES
At4g32600 CCICLAKYANNEELRELPCSHFFHKECVDKWLKINASCPLCK YES YES YES NO
*  *              * *  *  *          *  *

Cluster 2.5

7 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g63840 CAVCLYDFENDDEIRRLTNCRHIFHRGCLDRWMM-------------GYNQMTCPLCR YES YES YES NO
At3g43430 CAVCLGDLEDEDEIRELRNCTHVFHRDCIDRWLDYECCGGD------DDNHRTCPLCR YES YES YES YES
At3g61460 CAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDH--------------DQKTCPLCR YES YES YES YES
At4g11360 RHA1b CTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIV-------------DCNKITCPICR YES YES YES NO
At4g11370 CTVCLSDFESDDKVRQLPKCGHVFHHYCLDRWIV-------------DYNKMKCPVCR YES YES YES NO
At5g20880 CAVCLGDLEDGDEVRELRNCSHMFHRECIDRWLDYECCGGDENNEGEEDNHRTCPLCR YES YES YES YES
At5g41400 CAVCLHEFENDDEIRRLTNCQHIFHRSCLDRWMM-------------GYNQMTCPLCR YES YES YES NO
*  *               * *  *  *                         *  *

Cluster 2.6

5 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At5g37200 CSICIEKFSES----HED-IIRVPDCLHLFHQGCLFEWLGLQNSCPLCR YES YES YES YES
At5g37230 CSICMEDFSES----HDDNIILLPDCFHLFHQSCIFKWLKRQRSCPLCR YES YES YES YES
At5g37250 CSICLEDFSES----HDDNIILLPDCFHLFHQNCIFEWLKRQRSCPLCR YES YES YES YES
At5g37270 CSICLEDFSES----HDDNIILLPDCFHLFHQSCIFEWLKRQRSCPLCR YES YES YES YES
At5g37280 CSICFEKLSDSLSETYHNSIIQMPKCLHSFHQKCIFKWIGRQNSCPLCR YES YES YES YES
*  *                     * *  *  *          *  *

Cluster 2.7

5 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At3g02290 CPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVC YES YES YES YES
At4g23450 CPICLEEYEIDNPKLLTKCGHDFHLACILAWMERSEACPVC YES YES YES YES
At5g15790 CPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVC YES YES YES YES
At5g38890 CPTCLDDYTLENPKIITKCSHHFHLSCIYEWMERSETCPVC YES YES YES YES
At5g41350 CPICLEEYDIENPKLVAKCDHHFHLACILEWMERSETCPVC YES YES YES YES
*  *              * *  *  *          *  *

Cluster 2.8

5 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At4g05350 CSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCPLCR YES YES YES YES
At4g12140 CSICLQSLVSSSK-TGPTRMSCSHVFHSSCLVEWLKRKNTCPMCR YES YES YES YES
At4g12150 CSICLQSLVSSSK-TAPTRMSCSHVFHNGCLVEWLNRKNTCPMFH NO NO NO NO variant, ligand missing!
At4g12190 CSICLESLVSGPKPRDITRMTCSHVFHNGCLLEWLKRKNTCPLCR YES YES YES YES
At4g12210 CSICLENLVSGPKPSDLTRMTCSHVFHNPCLLEWFMRKNTCPLCR YES YES YES YES
*  *                 * *  *  *          *  *

Cluster 2.9

5 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g19680 CGRCSKLLTERS------PVARFDLPIPAVLACGHVYHAACLETMTNETEKYDPTCPICT YES YES YES YES
At1g75400 CGACSKLLTERS------SIATFELPIAAVLACGHVYHAECLETMTTDIEKYDPACPICT YES YES YES YES
At2g21500 CGACSRSLSEKSLLSSQKIFATNELSVAAILACGHVYHSECLEQMTPEIDKFDPSCPICT YES YES YES YES
At4g39140 CGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPICT YES YES YES YES
At5g18260 CGICKKLLSQKSPWSSYKILRSRDMPATGVFPCHHVYHVECLDKATPTAQTRDPSCPVCS YES YES YES YES
*  *                            * *  *  *              *  *

Cluster 2.10

5 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g22670 CAICLEDYIVGDKLRVLPCSHKFHVACVDSWLISWRTFCPVCK YES YES YES YES
At1g35630 CAICIDDYCVGEKLRILPCKHKYHAVCIDSWLGRCRSFCPVCK YES YES YES YES
At1g71980 RMRJR702 CAICLEDYTVGDKLRLLPCCHKFHAACVDSWLTSWRTFCPVCK YES YES YES YES
At4g09560 CCICLENYEKGDKLRILPCHHKFHVACVDLWLGQRKSFCPVCK YES YES YES YES
At5g66160 RMRJR700 CAICLEDYRFGESLRLLPCQHAFHLNCIDSWLTKWGTSCPVCK YES YES YES YES
*  *              * *  *  *           *  *

Cluster 2.11

4 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g51930 CPICLEEYEDDHQIRRLRNCGHVFHLLCIDSWLTQKQNCPSCR YES YES YES YES
At5g41430 CSICLEELEDGHEIIRIKKCRHVFHRSCIDSWLKQNRSCPNCR YES YES YES YES
At5g41440 CSICLEEFKIGHELMCIKKCRHVFHRFCMLSWIDANRNCPICR YES YES YES YES
At5g41450 CPICLEEFEDGHEIIRINMCRHVFHRFCIDPWLNQNLTCPNCR YES YES YES NO
*  *               * *  *  *          *  *

Cluster 2.12

4 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At3g62970 CPVCYEYLFDSVKAAHVMKCGHTMHMDCFEQMINENQYRCPIC NO NO NO NO
At5g18650 CPICYEYLFDSLKDTNVMKCGHTMHVECYNEMIKRDKFCCPIC NO NO NO NO
At5g22920 CPVCFEYLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVC NO NO NO NO PGPD14-like protein
At5g25560 CPICFEFLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLC NO NO NO NO
*  *               * *  *  *           *  *

Cluster 2.13

4 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g08050 CAICLYEIRKEDGKAIFTAECSHSFHFDCITSNVKHGNRICPLCR YES YES YES YES
At2g38970 CSICLNKMKEGGGHALFTAECSHSFHFHCIASNVKHGNQVCPVCR YES YES YES YES put. pol polyprotein
At3g54780 CSICLNKMKEGCGHAIFTAECSHMFHFHCIASNVKHGNQVCPVCR YES YES YES YES
At5g60710 CAICLTAMKAGQGHAIFTAECSHSFHFQCITTNVKHGNQICPVCR YES YES YES YES
*  *                * *  *  *           *  *

Cluster 2.14

3 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g18910 CPICHEYIFTSNSPVKALPCGHVMHSTCFQEYTCSHYTCPIC NO NO NO NO likely not a RING
At1g74760 CPICHEYIFTSSSPVKALPCGHLMHSTCFQEYTCSHYTCPVC NO NO NO NO likely not a RING
At3g18290 CPICCEFLFTSSEAVRALPCGHYMHSACFQAYTCSHYTCPIC NO NO NO NO likely not a RING
*  *               **  *  *          *  *

Cluster 2.15

3 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At2g24480 CAICLENMSRSENYCQMPYCKHCYHEGCVTKWVIGHNNSCPLCR YES YES YES YES
At3g28620 CAICLENLLRSEDYCEMPTCSHYFHEPCLTEWLTRDNNSCPLCR YES YES YES YES
At5g43200 CAICLEELSTSDDYCELPNCTHCFHEPCLTQWLIRGNNSCPLCR YES YES YES YES
*  *               * *  *  *           *  *

Cluster 2.16

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g15100 CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCR NO NO NO NO likely not a RING
At2g01150 RHA2b CIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCR NO NO NO NO likely not a RING
*  *              * *  *  *           *  *

Cluster 2.17

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g65040 CIICREEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTCR YES YES YES YES
At3g16090 CIICREEMTNAKKLICGHLFHVHCLRSWLERQQTCPTCR YES YES YES YES
*  *           * *  *  *          *  *

Cluster 2.18

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At3g14970 CVICMDKIRIGLDVAAGRMPCSHVFHRTCGEDWLRCSGICPVCR YES NO NO NO
At3g15740 CVICMDNIRVGSDVEAGRMPCSHVFHRTCGEEWLRNSGICPVCR YES NO NO NO
*  *                * *  *  *          *  *

Cluster 2.19

2 sequences:
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At2g44580 CTICLENATEGEKMRRIAACSHCFHVDCIDPWLEKKSMCPLCR YES YES YES YES 2nd nearly identical domain in protein
At2g44580 CTICLEDAAEGEKMRRITACSHCFHVDCIDPWLMKKSTCPLCR YES YES YES YES 2nd nearly identical domain in protein
*  *               * *  *  *          *  *

Cluster 2.20

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At2g22680 CGICLQSVKSGQGTAIFTAECSHTFHFPCVTSRAAANHNRLASCPVC YES YES YES NO put. pol polyprotein
At4g37890 CGICLQSAKAGRGTAIFTAECSHTFHFPCVASRA-GDRNLLSDCPVC YES YES YES YES
*  *                * *  *  *              *  *

Cluster 2.21

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At2g18670 CVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICR YES YES YES YES
At4g30370 CVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICR YES YES YES YES
*  *               * *  *  *          *  *

Cluster 2.22

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At4g25230 CAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCR NO NO NO NO likely not a RING
At5g51450 CAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCR NO NO NO NO likely not a RING
*  *           * *  *  *              *  *

Unique RING-H2 domains
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g04790 CVICLETPKIGDTIRHLPCLHKFHKDCIDPWLGRSKSCPVCK YES YES YES YES
*  *              * *  *  *          *  *
At1g24580 CCVCLCGFKEEEEVSELVSCKHFFHRACLDNWFGNNHTTCPLCR YES YES YES YES
*  *               * *  *  *           *  *
At1g27010 CVICLEDYMVSDIVRVLPHCGHQFHAFCIDKWFQLCSTCPSCR YES YES YES YES
*  *               * *  *  *          *  *
At1g49850 RHY1a CSICLESFTKGDMLISLPCTHSFHSSCLNPWLRACGDCPCCR YES YES YES YES
*  *              * *  *  *          *  *
At1g53010 CAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCPTCRKD YES YES YES NO
*  *               * *  *  *          *  *
At1g55410 CDVCGLSLSDAEDLVYSCLPCSHMVHRSCIYLPRVIQITRHSHRLSLTSSLPSGDFSCGVCR NO NO NO NO likely not a RING
*  *                * *  *  *                            *  *
At1g57730 CAICLEDMSQDVHDYQEMPNCPHVFHNDCIYKWLGHSNLCPLCR YES YES YES YES
*  *                * *  *  *          *  *
At1g70910 CGLCLLEEQHLFDMPNCAHVFHGDCIDKWLSTSNNCPLC YES YES YES YES
*  *            * *  *  *          *  *
At1g74620 CAICMEDYIEGSSIVAKLPCDHEFHGDCINKWLQLNHMCPLCR YES YES YES YES
*  *               * *  *  *          *  *
At2g04240 CSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCR YES YES YES NO
*  *              * *  *  *           *  *
At2g05170 CTACTFTLDIPAVHFMCMHSFHQRCLGDNEKECPEC YES YES YES YES
*  *            * *  *  *       *  *
At2g15260 CSICRGALVNENDVQRTLVTLKCVHKFHLDCIGSAYNAKGFMECPNCR YES YES YES NO
*  *                  * *  *  *            *  *
At2g15580 CAICLDRFKKGETLVHLPCAHKFHSICLLPWLDTNVYCPYCR YES YES YES NO
*  *              * *  *  *          *  *
At2g20650 CVICMTTIDLRHRINDCMVTPCEHIFHSGCLQRWMDIKMECPTCR YES YES YES NO
*  *                 * *  *  *          *  *
At2g26000 CPVCLERLDQDTGGILTTMCNHSFHCSCISNWPDSSCPVCR YES YES YES YES
*  *               * *  *  *        *  *
At2g28920 CVICLEDFKVNDVVRVLVRCKHVFHVDCIDSWCFYKLTCPICR YES YES YES NO
*  *               * *  *  *          *  *
At2g47700 CSICLESVLDDGTRSKAKLQCGHQFHLDCIGSAFNMKGAMQCPNCR YES YES YES NO
*  *                * *  *  *            *  *
At3g05870 CPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMC YES YES YES NO
*  *             * *  *  *             *  *
At3g47180 CVVCQMEFEERESLVVLRPCDHPYHSECITKWLETKKICPIC YES YES YES YES
*  *               * *  *  *          *  *
At3g47990 CLICLEEFHIGHEVRGLPCAHNFHVECIDQWLRLNVKCPRCR YES YES YES NO
*  *              * *  *  *          *  *
At3g55530 CSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVCK YES YES YES YES
*  *              * *  *  *          *  *
At3g58720 CSVCLEDFEPKETVMLTPCKHMFHEECIVPWLKTKGQCPVCR YES YES YES YES
*  *              * *  *  *          *  *
At4g01270 CSICYEDLKPVVENLQSISACGHVFHELCLQQWFEYCPSTNKRNCPICK YES YES YES YES
*  *                * *  *  *               *  *
At4g13490 CAVCLEPLANDADERTVVKLRCSHKFHLDCVGSSFNIKNKMECPCCR YES YES YES NO
*  *                 * *  *  *            *  *
At4g14220 RHF1a CSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPIC YES YES YES YES
*  *              * *  *  *          *  *
At4g18110 CIICLEELASSGSERRIMKLLCSHSFHKDCILPWLRCKRSCPTCR YES YES YES YES
*  *                 * *  *  *          *  *
At5g05530 CTICLEELCHDEESIETHDCCHVFHKLCLWRWIRTKSSCPLCR YES YES YES YES
*  *               * *  *  *          *  *
At5g05910 CPICLEDLKKVDNDDDKVVVCLSKCNHSFHMNCIFSWLRESQDCPICR YES YES YES YES
*  *                    * *  *  *          *  *
At5g54990 CPICLTELSSGVSRMKLPCSHVFHRDCIMTWLKKNPSCPICR YES YES YES YES
*  *              * *  *  *          *  *
At5g57820 CDLCQRDLAKDPERPNASLSGLQEACVLSCGHVYHFKCLRGTTLDIDNHSKDPSCIFC YES YES YES YES
*  *                         * *  *  *                *  *
At5g67120 CVICQQKLKDNEEVSKLGCGHDFHFGCIKNWLMVTNKCPLCN YES YES YES YES
*  *              * *  *  *          *  *

 
                 

Variant RING finger domains
 

(3) RING-HC, C6 or C7 position substituted or missing:  41 domains in 39 proteins

Cluster 3.1

10 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At2g26130 CNICLNDDINADQMFSVDKSGHMCCSECVKRHIEVRLLEGSLITCPSY NO NO NO NO 2nd domain in protein
At2g26130 CTICFDDDINADMMFYIDQCGHMFCSECVKRHIE-----GSLITCPSY NO NO NO NO 2nd domain in protein
At3g43180 CRICFDEDVKAEQMYSVALCGHQFCVDCVKQHIESRLLEGCVPRCPHD YES YES YES YES
At3g43750 CSICFNNVLEAEKMFSVAICGHQFCVECVKHYIEVKLLEGGVPRCLDY NO NO NO NO
At3g45510 CGICFVDDIEGQEMFSAALCSHYFCVECMKQRIEVSLNEGGVPRCPRH NO NO NO NO
At3g45540 CKICLDDDINENQMFCVGKCRHRFCSDCMRRHIEVRLLEGSVMRCPHY NO NO NO NO
At3g45560 CGICFNDDFKAEHMFSVDLCGHQFCVECMTQYIKVRLLEESEMRCPHY NO NO NO NO
At3g45570 CSICSGDNIEPEQIFSVALCGHEFCMECVKQHIEVKLLSGGVPRCLHY NO NO NO NO
At3g45580 CSICSDDNFEPELMFSVALCGHEFCVECVKRHIEVRLLAGGVPRCLHY NO NO NO NO
At5g60250 CAICFND-IVAEGMFSVDKCRHRFCFQCVKQHVEVKLLHGMAPKCPHD YES YES YES YES 2nd domain in protein
*  *               * *  *  *                *  ?

Cluster 3.2

6 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g05890 CGICFDSYTLEEIVSVSCGHPFCATCWTGYISTTINDGPGCLMLKCPDPSC NO NO NO NO
At1g65430 CGICFETFLSDKLHAAACGHPFCDSCWEGYITTAINDGPGCLTLRCPDPSC NO NO NO NO
At2g31510 CGICFDSYPPEKIASVSCGHPFCTTCWTGYISTTINDGPGCLMLRCPDPSC NO NO NO NO D.m. Ariadne-like
At2g31760 CGICFESYTRKEIASVSCGHPYCKTCWTGYITTKIEDGPGCLRVKCPEPSC NO NO NO NO D.m. Ariadne-like
At2g31770 CGICFESYTREEIARVSCGHPYCKTCWAGYITTKIEDGPGCLRVKCPEPSC NO NO NO NO D.m. Ariadne-like
At2g31780 CGICFESYTRKEIARVSCGHPYCKTCWTGYITTKIEDGPGCLRVKCPEPSC NO NO NO NO D.m. Ariadne-like
*  *             * *  *  *                     ?  *

Cluster 3.3

3 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g50410 CCVCHDPPEDPVVTLCGHIFCYQCVSDYITGDEDTCPAPRCREQLAHDVVFSKSTLRSCVAD YES YES YES YES put. DNA binding prot.
At3g16600 CSVCSDPPKDPVVTLCGHVFCYECVSVNINGDNNTCPALNCHSQLKHDVVFTESAVRSCIND YES YES YES YES put. DNA binding prot.
At3g20010 CYECNEPPEKPVVTLCGHIFCYECVLEYITGDENTCPVPRCKQQLARDVVFSESSLRNCTSD YES YES YES YES RUSH1-alpha-like prot.
*  *           * *  *  *                                  *  ?

Cluster 3.4

3 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At2g16090 CDICVED-VPGYQLTRMDCGHSFCNNCWTGHFTVKINEGQSKRIICMAHK NO NO NO NO
At3g27710 CDVCMEDDLPSNVMTRMECGHRFCNDCWIGHFTVKINEGESKRILCMAHE NO NO NO NO
At4g34370 CDVCMED-LPGDHMTRMDCGHCFCNNCWTEHFTVQINEGQSKRIRCMAHQ NO NO NO NO
*  *              * *  *  *                  *  ?

Cluster 3.5

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At5g63750 CGICFKTCDD-GDY--------LISTPFCSHMFCKSCWRKYLEKNFYLVEKTQTRISCPHGAC NO NO NO NO D.m. Ariadne-like
At5g63760 CGICSNIGDDDYDGDAVVVDGDLISTPFCSHKFCKACWSKYLKKNFFSVEKNHTAISCPDRDC NO NO NO NO
*  *                        * *  *  *                      ?  *

Cluster 3.6

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At4g01020 CPICLSEVDDGYSLEGCSHLFCKACLLEQFEASMRNFDAFPILCSHIDC NO NO NO NO 2nd domain in protein
At5g10370 CPICLSEVDDGYSLEGCSHLFCKACLLEQFEASMRNFDAFPILCSHIDC NO NO NO NO
*  *            * *  *  *                    ?  *

Cluster 3.7

2 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At2g25360 CSICFEETEGERMFFTTEKCVHRHCFPCVKQYVEVKLLSGTVPTCLDD NO NO NO NO
At3g45470 CVICLEETKADRMF-VMDKCLHRHCYPCVNQLVEVKLRNGTVPTCLDY NO NO NO NO
*  *               * *  *  *               *  ?


Unique RING-HC, C6 or C7 position substituted or missing:
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g11100 CGICNVRLSTHAVVSLCGHVFCNQCICECLTRDNNQCPLSYC NO NO NO NO RUSH1 alpha-like prot.
*  *            * *  *  *           *  ?
At1g32340 CCICFSESAGIDFVKLPCQHFFCLKCMKTYTDIHVTEGTVNKLKCPDSK NO NO NO NO
*  *             * *  *  *                  *  ?
At1g61140 CGICNDAPEDAVASVCGHVFCKQCIYERLTGDSNHCPFANC NO NO NO NO
*  *           * *  *  *           *  ?
At2g19610 CPVCYAYVSPNDKFEVQGCFHRICVTCMRKPFSSEQILRGNTAICPYPDC NO NO NO NO
*  *              * *  *  *                 *  ?
At3g14250 CMICMDEKPSSDIFRGTTNCTHAYCTDCTVRYVATKIKENASRIKCPDVIC NO NO NO NO
*  *               * *  *  *                 *  ?
At3g45480 CGNCFNDGIKGENMFSADLCSHYFCVECMKEHIEVSLNEGGLPRCPHD YES YES YES YES
*  *               * *  *  *                *  ?
At3g45580 CENCKNVIELSEGCMHITCRCGHQFCYKCGAKWITGRVFCTHS NO NO NO NO 2nd domain in protein
*  *                * *  *  *          *  ?
At3g53690 CEICVDSKSIIESFRIGGCSHFYCNDCVSKYIAAKLQDNILSIECPVSGC NO NO NO NO
*  *              * *  *  *                 *  ?
At3g54460 CKRCGEWCRLPVITPCRHLLCLDCVALDSERCTISGC NO NO NO NO
*  *           * *  *  *       *  ?
At4g19670 CSICCEDRQSEMMLSLKCTHKFCSHCMKTYVEGKVKTSEVPIRCPQVQ NO NO NO NO 2nd domain in protein
*  *             * *  *  *                 *  ?
At4g19670 CQQCRIMIELAQGCNHMTCRCGHEFCYSCGAEYREGQQTCTC NO NO NO NO 2nd domain in protein
*  *                * *  *  *         ?  *
At5g07640 CPVCYEHVTSDEKFEVPGCFHRFCFDCIKKQADVALEFAKPVVNCPSFGC NO NO NO NO
*  *              * *  *  *                   ?  *
At5g60250 CGKCQHMIELSQGCNHITCRCGHEFCYNCGGGWNKIMGTCLNRC NO NO NO NO 2nd domain in protein
*  *                * *  *  *           ?  *


(4) RING-H2, C7 position substituted or missing: 2 domains in 2 proteins
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At3g42830 CIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD YES YES YES YES Rbx1-like
*  *                  * *  *  *          *  ?
At5g37220 CSICMENLNSESSSENIISCLHLFHQSCIFESESSVRGNIMKPCEALK NO NO NO NO
*  *               * *  *  *               *  ?

 

(5) C4 or C5 position substituted or missing: 9 domains in 9 proteins
 

Cluster 5.1

6 sequences:
(full length alignment of proteins in the cluster)
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g18760 CTICLEEFNDGTKVMTLPCGHEFDDECVLTWFETNHDCPLCR NO NO NO NO
At1g18770 CIICLEEFSEGRRVVTLPCGHDFDDECVLKWFETNHSCPLCR NO NO NO NO
At1g18780 CTICLEEFDDGRSIVTLPCGHEFDEECVLEWFVRSHVCPLCR NO NO NO NO
At1g21960 CTICLEEFEKGEIVVTLPCGHEFDDGCIGKWFLKDHVCPLCR NO NO NO NO
At2g29840 CSICLEEFDDGRSIVALPCGHEFDDECALKWFETNHDCPLCR NO NO NO NO
At5g53910 CAICFQEFKTGREVATLLCGHEFDNKCIMEWFKVRYNCPLCR NO NO NO NO likely not a RING
*  *              * *  ?  *          *  *

Unique domains with C4 or C5 position substituted or missing:
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At1g36950 CCICQDRFQRRAGVGKLNCGHNFHINSVKPWILTKKQCPVCQ NO NO NO NO
*  *              * *  *  ?          *  *
At1g77830 CCLCQKGYPKEDEIVHKTKCNHIFYGTCISRYLLHTPRCPVCS NO NO NO NO RHA1b-like
*  *               * *  ?  *          *  *
At2g34000 CPVCLGLIPKNVVIKVLPNCMHMFDEECIGKWLESHATCPVCR NO NO NO NO
*  *               * *  ?  *          *  *


(6) C2 position substituted or missing: 2 domains in 2 proteins
 
Protein ID a.k.a. Domain String. 1 String. 2 String. 3 String. 4 Remarks
At2g37150 CNLPGEVKGCGHDYHGRCIKKWLSMKNSCPICK NO NO NO NO
*  ?     * *  *  *          *  *
At5g63760 CPARGCNYVIEFHLASEDEEHSLNIVCLCGHIFCWRCMLESHRPVTCNNASDWLSRDLEKLIEEVDKPSTVSWIDANTKPCPHC NO NO NO NO 2nd domain in protein
*  ?                        * *  *  *                                           *  *