From: swissmodel@unibas.ch Sent: Thursday, November 13, 2003 7:49 PM To: Kathrin_Schrick@kgi.edu Subject: SwissModel_TraceLog_AAAa0Dmo4 ProModII trace log for Batch.0 ============================================================ ProModII: 3.70 (SP3) ProModII: Loading Project File: Batch.0 ProModII: 1em2a : at least one HETATM group lacked proper CONNECT informations. Connection will be generated between atoms that are closer than 2.000A, which can generate false bonds. Nb of HETATM groups in this case: (3) ProModII: ProModII: doing complex assignment of backbone ProModII: N-terminal overhang trimmed for chain ' '. Start at residue: 10 ProModII: ProModII: adding blocking groups ProModII: Weighting Backbones ProModII: Averaging Sidechains ProModII: Adding Missing Sidechains ProModII: Optimizing Sidechains ProModII: Dumping Preliminary Model ProModII: Adding Hydrogens ProModII: Optimizing loops and OXT (nb = 1) ProModII: Final Total Energy: -8076.225 KJ/mol ProModII: Removing Hydrogens ProModII: Fixing Atom Nomenclature ProModII: Dumping Sequence Alignment ***