SRM1 YGL097W 1 0 0 0 0 1 0 0.042 N GDP/GTP exchange factor for Gsp1p/Gsp2p RRP42 YDL111C 0 0 1 1 1 1 1 2.249 P rRNA processing protein RPS23B YPR132W 1 0 0 0 0 0 0 -0.782 N 40S small subunit ribosomal protein S23.e RPL20A YMR242C 1 0 0 0 0 0 0 -0.782 N 60s large subunit ribosomal protein NSA2 YER126C 1 0 0 0 1 1 0 0.949 P involved in biogenesis of ribosomal large subunit RPL25 YOL127W 1 0 0 0 0 0 0 -0.782 N ribosomal protein L23a.e EGD1 YPL037C 0 0 0 0 0 1 0 -1.557 N GAL4 DNA-binding enhancer protein DBP9 YLR276C 1 0 0 0 1 0 0 0.125 N similarity to YDL031w, Mak5p and RNA helicases RPC19 YNL113W 1 0 0 1 1 1 1 3.341 P DNA-directed RNA polymerase I,III 16 KD subunit NOP13 YNL175C 0 0 0 0 0 1 0 -1.557 N similarity to S.pombe Rnp24p, Nsr1p and human splicing factor NOP2 YNL061W 1 0 0 0 1 1 0 0.949 P nucleolar protein none YIL096C 0 0 0 0 0 0 0 -2.381 N weak similarity to hypothetical protein SPCC1919.13c S. pombe RPL4A YBR031W 1 1 0 0 0 0 1 2.470 P ribosomal protein none YOR004W 0 0 0 0 0 0 0 -2.381 N weak similarity to hypothetical protein YDR339c RPS30A YLR287C-A 1 0 0 0 0 0 0 -0.782 N 40S small subunit ribosomal protein none YGR054W 0 0 0 0 1 1 1 1.125 P similarity to C.elegans E04D5.1 protein RSA3 YLR221C 0 0 0 0 1 0 0 -1.474 N hypothetical protein BFR2 YDR299W 1 0 1 1 1 1 0 2.073 P involved in protein transport steps at the Brefeldin A blocks NOG2 YNR053C 1 0 0 0 1 1 0 0.949 P strong similarity to human breast tumor associated autoantigen RPS11A YDR025W 1 0 0 0 0 0 0 -0.782 N ribosomal protein S11.e none YNL207W 0 0 0 0 1 1 0 -0.649 N similarity to M.jannaschii hypothetical protein MJ1073 none YPR169W 0 0 0 0 0 0 0 -2.381 N weak similarity to hypothetical protein SPAC1A6.02 S. pombe GRC3 YLL035W 0 0 0 0 0 0 0 -2.381 N similarity to S. pombe SPCC830.03 protein of unknown function NAT1 YDL040C 0 0 0 0 1 0 0 -1.474 N protein N-acetyltransferase subunit none YIL019W 0 0 0 0 0 0 0 -2.381 N weak similarity to S.pombe hypothetical protein SPAC3F10 RPS9B YBR189W 0 1 0 0 0 0 0 -0.904 N ribosomal protein S9.e.B RPL9A YGL147C 1 1 0 0 0 0 0 0.695 P ribosomal protein L9.e RPS9A YPL081W 0 1 0 0 0 0 0 -0.904 N ribosomal protein S9.e.A PWP1 YLR196W 1 0 0 0 1 1 1 2.724 P similarity to human IEF SSP 9502 protein none YOR145C 1 0 0 0 1 1 0 0.949 P strong similarity to hypothtical S. pombe protein and to hypothetical C. elegans protein CBF5 YLR175W 0 1 0 0 1 1 1 2.603 P putative rRNA pseuduridine synthase SIS1 YNL007C 0 0 0 0 0 1 0 -1.557 N heat shock protein RPS26A YGL189C 0 0 0 1 0 0 0 -1.764 N 40S small subunit ribosomal protein S26e.c7 REX4 YOL080C 0 0 0 0 0 0 0 -2.381 N strong similarity to X.laevis XPMC2 protein and YGR276c RPL17A YKL180W 0 1 1 0 0 0 0 -0.397 N ribosomal protein L17.e none YHR034C 0 0 0 0 0 0 0 -2.381 N weak similarity to TRCDSEMBL:AK000650_1 unnamed ORF; Homo sapiens HCR1 YLR192C 0 0 1 0 1 0 1 0.808 P component of translation initiation factor eIF3, has similarity to human eIF3 p35 subunit TSR2 YLR435W 0 0 1 1 0 0 0 -1.258 N Twenty S rRNA accumulation protein RPA34 YJL148W 0 0 0 0 0 0 1 -0.606 N nonessential component of RNA-polI RPR2 YIR015W 0 0 0 0 0 0 0 -2.381 N RNase P subunit UTP8 YGR128C 0 0 0 0 1 0 1 0.301 N U3 snoRNP protein RNA1 YMR235C 0 0 0 0 0 1 0 -1.557 N GTPase activating protein RPL23B YER117W 1 1 0 0 0 0 0 0.695 P ribosomal protein L23.e none YMR097C 0 0 0 0 0 0 0 -2.381 N weak similarity to M.genitalium hypothetical protein homolog MG442 SPT15 YER148W 0 0 0 0 1 0 0 -1.474 N the TATA-binding protein TBP LRS4 YDR439W 0 0 1 1 0 0 0 -1.258 N involved in rDNA silencing SQT1 YIR012W 0 0 0 0 0 0 0 -2.381 N suppresses dominant-negative mutants of the ribosomal protein QSR1 RPS18B YML026C 1 1 0 0 0 0 0 0.695 P ribosomal protein S18.e.c13 HCA4 YJL033W 1 1 0 0 1 0 1 3.377 P can suppress the U14 snoRNA rRNA processing function MRH4 YGL064C 0 0 0 0 1 0 0 -1.474 N helicase-related protein none YKL082C 1 0 0 0 0 1 0 0.042 N weak similarity to C.elegans hypothetical protein RPS10B YMR230W 1 0 0 0 0 0 0 -0.782 N ribosomal protein none YDR365C 1 0 0 0 1 1 1 2.724 P weak similarity to Streptococcus M protein RSA1 YPL193W 0 0 0 0 0 0 0 -2.381 N nucleoplasmic protein involved in assembly of 60S ribosomal subunits RPS4A YJR145C 1 1 1 0 0 0 0 1.202 P ribosomal protein S4.e.c10 NET1 YJL076W 0 0 1 0 1 1 0 -0.143 N required for rDNA silencing and nucleolar integrity SKI6 YGR195W 1 0 1 0 1 0 1 2.406 P 3^-5^ exoribonuclease required for 3^ end formation of 5.8S rRNA none YPR143W 1 0 0 0 0 1 0 0.042 N hypothetical protein PWP2 YCR057C 1 0 0 0 1 1 1 2.724 P periodic tryptophan protein none YJR041C 0 0 0 0 0 1 0 -1.557 N weak similarity to hypothetical protein SPAC2G11.02 S. pombe RPS21B YJL136C 0 0 0 0 0 0 0 -2.381 N 40S small subunit ribosomal protein S21.e SRP40 YKR092C 0 0 1 0 0 0 0 -1.874 N suppressor of mutant AC40 of RNA polymerase I and III none YOR056C 1 0 0 0 1 1 0 0.949 P weak similarity to human phosphorylation regulatory protein HP-10 DRS1 YLL008W 1 0 0 0 1 1 0 0.949 P RNA helicase of the DEAD box family EST1 YLR233C 0 0 0 0 0 1 0 -1.557 N telomere elongation protein RRN3 YKL125W 1 0 0 0 0 0 0 -0.782 N RNA polymerase I specific transcription factor POP8 YBL018C 0 0 0 0 1 0 0 -1.474 N required for processing of tRNAs and rRNAs IMP3 YHR148W 1 0 0 0 1 0 0 0.125 N component of the U3 small nucleolar ribonucleoprotein RPP1 YHR062C 1 0 0 0 1 0 1 1.900 P required for processing of tRNA and 35S rRNA RRP7 YCL031C 1 0 0 0 1 0 1 1.900 P involved in pre-rRNA processing and ribosome assembly RPA49 YNL248C 0 0 0 0 1 1 1 1.125 P DNA-directed RNA polymerase A (I) chain, 46 kDa GCN2 YDR283C 0 0 0 0 1 0 0 -1.474 N ser/thr protein kinase AIR1 YIL079C 0 0 0 0 0 1 0 -1.557 N arginine methyltransferase-interacting RING finger protein ENP1 YBR247C 1 0 0 0 1 1 0 0.949 P effects N-glycosylation RPL29 YFR032C-A 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein RPC10 YHR143W-A 0 0 0 0 0 1 0 -1.557 N DNA-directed RNA polymerases I, II, III 7.7 KD subunit KRR1 YCL059C 1 0 0 0 1 1 0 0.949 P required for 40S ribosome biogenesis none YIL091C 1 0 0 0 0 0 0 -0.782 N weak similarity to spt5p MAK16 YAL025C 1 0 0 0 0 1 0 0.042 N nuclear viral propagation protein RPL41A YDL184C 0 0 0 0 0 0 0 -2.381 N ribosomal protein RPS13 YDR064W 0 1 0 0 0 0 0 -0.904 N ribosomal protein RPB5 YBR154C 1 0 0 0 1 1 1 2.724 P DNA-directed RNA polymerase I, II, III 25 KD subunit RPA190 YOR341W 1 0 0 0 1 1 1 2.724 P DNA-directed RNA polymerase I, 190 KD alpha subunit RRN5 YLR141W 0 0 0 0 0 0 0 -2.381 N RNA polymerase I specific transcription initiation factor none YBR141C 0 0 0 0 0 0 0 -2.381 N similarity to hypothetical protein S. pombe MRPL9 YGR220C 0 0 0 0 1 0 0 -1.474 N mitochondrial ribosomal protein, large subunit YTM1 YOR272W 0 1 0 0 1 1 1 2.603 P microtubule-interacting protein RPL8A YHL033C 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein L7a.e.A NOP58 YOR310C 1 1 0 0 1 1 1 4.202 P required for pre-18S rRNA processing DBP7 YKR024C 1 0 0 0 0 1 1 1.817 P RNA helicase required for 60S ribosomal subunit assembly PXR1 YGR280C 1 0 1 0 0 1 0 0.549 P component of the ribosomal RNA processing machinery RPS29B YDL061C 0 0 0 0 0 0 0 -2.381 N ribosomal protein S29.e.B TIF5 YPR041W 0 0 0 0 1 0 1 0.301 N translation initiation factor eIF5 RPS12 YOR369C 1 0 0 0 0 0 0 -0.782 N 40S small subunit acidic ribosomal protein S12 KRE33 YNL132W 1 0 0 0 1 1 0 0.949 P similarity to A.ambisexualis antheridiol steroid receptor NMD3 YHR170W 0 0 0 0 1 1 0 -0.649 N nonsense-mediated mRNA decay protein LTV1 YKL143W 0 0 1 0 1 1 0 -0.143 N low-temperature viability protein RRN7 YJL025W 0 0 0 1 0 0 0 -1.764 N polymerase I specific transcription initiation factor RPA135 YPR010C 1 0 0 0 1 1 1 2.724 P DNA-directed RNA polymerase I, 135 KD subunit RPL36B YPL249C-A 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein MAP1 YLR244C 1 0 0 0 0 0 0 -0.782 N methionine aminopeptidase, isoform 1 NUG1 YER006W 1 1 0 0 1 1 0 2.427 P Nuclear GTPase (involved in Ribosome biogenesis) RPL13A YDL082W 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein L13 POP1 YNL221C 0 0 1 0 1 0 1 0.808 P protein component of ribonuclease P and ribonuclease MRP TOM1 YDR457W 0 0 0 0 0 1 0 -1.557 N E3 ubiqitin ligase required for G2/M transition POP3 YNL282W 0 0 0 0 1 0 1 0.301 N involved in processsing of tRNAs and rRNAs RNT1 YMR239C 0 0 0 0 0 1 0 -1.557 N double-stranded ribonuclease RLI1 YDR091C 0 0 1 0 1 1 1 1.632 P strong similarity to human RNase L inhibitor and M.jannaschii ABC transporter protein UTP7 YER082C 1 0 0 0 1 1 0 0.949 P U3 snoRNP protein RRP6 YOR001W 1 0 0 0 1 1 1 2.724 P similarity to human nucleolar 100K polymyositis-scleroderma protein NOC3 YLR002C 1 0 0 0 1 1 1 2.724 P required for maturation and intranuclear transport of pre-ribosomes UTP13 YLR222C 1 0 1 0 1 1 1 3.231 P U3 snoRNP protein none YJL010C 0 0 0 0 0 0 0 -2.381 N weak similarity to C.elegans hypothetical protei ZK792.5 RPF1 YHR088W 1 0 0 0 1 1 0 0.949 P similarity to hypothetical protein YNL075w RPS14B YJL191W 0 1 0 0 0 0 0 -0.904 N 40S small subunit ribosomal protein S14.e.B RPL6A YML073C 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein RRP45 YDR280W 1 0 1 0 1 0 1 2.406 P rRNA processing protein RRP1 YDR087C 1 0 0 0 1 1 0 0.949 P involved in processing rRNA precursor species to mature rRNAs CRM1 YGR218W 1 0 1 0 1 1 0 1.456 P nuclear export factor, exportin none YCR087C-A 1 0 1 0 0 0 0 -0.276 N similarity to S. pombe SPBC215.06c putative nucleic acid-binding protein RIO1 YOR119C 0 0 1 0 0 0 0 -1.874 N similarity to a C.elegans ZK632.3 protein none YPL157W 0 0 0 1 0 0 0 -1.764 N weak similarity to S.pombe hypothetical protein SPAC2G11.15c RPS6B YBR181C 1 1 0 0 0 0 0 0.695 P ribosomal protein S6.e RRP40 YOL142W 1 0 0 0 1 0 1 1.900 P protein involved in ribosomal RNA processing, component of the exosome complex responsible for 3^ end processing and degradation of many RNA species PAT1 YCR077C 0 0 1 0 1 1 1 1.632 P topoisomerase II-associated protein RPS16A YMR143W 0 0 0 0 0 0 0 -2.381 N ribosomal protein S16.e TIF6 YPR016C 1 1 0 0 1 1 0 2.427 P translation initiation factor 6 (eIF6) RPL3 YOR063W 1 1 0 0 0 0 1 2.470 P 60S large subunit ribosomal protein L3.e SGD1 YLR336C 0 0 0 0 0 1 0 -1.557 N involved in HOG pathway RIA1 YNL163C 0 0 0 0 0 0 0 -2.381 N translation elongation factor eEF4 NOP14 YDL148C 1 0 0 0 1 1 0 0.949 P nuclear and nucleolar protein with possible role in ribosome biogenesis FAP7 YDL166C 0 0 1 0 1 0 0 -0.967 N involved in the oxidative stress response RRP12 YPL012W 0 0 0 0 1 1 0 -0.649 N hypothetical protein NUP49 YGL172W 0 0 0 0 0 0 0 -2.381 N nuclear pore protein none YGR271C-A 0 0 0 0 0 0 0 -2.381 N conserved hypothetical protein RPP0 YLR340W 0 1 1 1 0 1 1 2.819 P acidic ribosomal protein L10.e none YIL127C 0 0 0 0 0 0 0 -2.381 N weak similarity to Smy2p POP5 YAL033W 0 0 0 0 1 0 0 -1.474 N required for processing of tRNAs and rRNAs FUN12 YAL035W 1 0 0 0 1 1 1 2.724 P general translation factor eIF2 homolog RPL30 YGL030W 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein L30.e NGL2 YMR285C 0 0 0 0 0 1 0 -1.557 N similarity to Ccr4p TOR2 YKL203C 0 0 0 0 0 0 0 -2.381 N phosphatidylinositol 3-kinase BMS1 YPL217C 1 0 0 0 1 1 1 2.724 P GTP-binding protein, required for distinct steps of 40S ribosome biogenesis STM1 YLR150W 0 0 0 0 1 0 0 -1.474 N specific affinity for guanine-rich quadruplex nucleic acids RPL28 YGL103W 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein L27a.e RPL18B YNL301C 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein L18.e RPL37A YLR185W 0 0 0 0 0 0 0 -2.381 N ribosomal protein L37.e RPL14B YHL001W 1 1 0 0 0 0 0 0.695 P ribosomal protein TSR1 YDL060W 1 0 0 0 1 1 0 0.949 P similarity to C.elegans hypothetical protein DBP3 YGL078C 0 0 0 0 0 0 1 -0.606 N putative RNA helicase required for pre-rRNA processing FHL1 YPR104C 0 0 1 0 0 1 0 -1.050 N transcriptional activator of the forkhead/hnf3 family NOP8 YOL144W 0 0 0 0 0 0 0 -2.381 N nucleolar protein required for 60S ribosome biogenesis RLP7 YNL002C 0 0 0 0 1 1 0 -0.649 N strong similarity to mammalian ribosomal L7 proteins EST2 YLR318W 0 0 0 0 0 0 0 -2.381 N catalytic subunit of the telomerase ECM1 YAL059W 0 0 0 0 1 1 0 -0.649 N involved in cell wall biosynthesis RPL35A YDL191W 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein RPS31 YLR167W 1 0 0 0 0 0 0 -0.782 N ubiquitin/40S small subunit ribosomal protein EBP2 YKL172W 1 0 0 0 1 1 0 0.949 P required for pre-rRNA processing and ribosomal subunit assembly none YNR046W 1 0 0 0 0 0 0 -0.782 N strong similarity to S.pombe hypothetical protein SPAC31A2.02 DBP8 YHR169W 1 0 0 0 1 1 0 0.949 P strong similarity to Drs1p and other probable ATP-dependent RNA helicases RRP3 YHR065C 1 0 0 0 0 0 0 -0.782 N required for maturation of the 35S primary transcript BTT1 YDR252W 0 0 0 0 0 0 0 -2.381 N alternate beta subunit of the nascent polypeptide-associated complex SPB4 YFL002C 1 0 0 0 1 1 0 0.949 P ATP-dependent RNA helicase of DEAH box family RPL42B YHR141C 1 0 0 0 0 0 0 -0.782 N ribosomal protein L36a.e ARD1 YHR013C 0 0 0 0 1 0 0 -1.474 N protein N-acetyltransferase subunit SIR2 YDL042C 0 0 0 0 1 1 0 -0.649 N silencing regulatory protein and DNA-repair protein RPS5 YJR123W 1 0 0 0 0 0 0 -0.782 N ribosomal protein S5.e MPP10 YJR002W 1 1 1 0 1 0 0 2.109 P component of the U3 small nucleolar ribonucleoprotein LSM8 YJR022W 0 0 1 1 0 1 0 -0.433 N splicing factor VAR1 Q0140 0 0 0 0 0 0 0 -2.381 N mitochondrial ribosomal protein, small subunit none YKL014C 0 0 0 0 1 1 0 -0.649 N similarity to hypothetical protein SPCC14G10.02 S. pombe KEM1 YGL173C 0 0 0 0 0 0 1 -0.606 N multifunctional nuclease RPS22B YLR367W 0 0 0 0 0 0 0 -2.381 N ribosomal protein S15a.e.c12 IFH1 YLR223C 0 0 0 0 0 0 0 -2.381 N pre-rRNA processing machinery control protein NSR1 YGR159C 1 1 0 0 0 1 1 3.295 P nuclear localization sequence binding protein RPL43B YJR094W-A 0 0 0 0 0 0 0 -2.381 N 60S large subunit ribosomal protein LHP1 YDL051W 1 0 0 0 1 1 0 0.949 P RNA binding protein ERB1 YMR049C 1 0 0 0 1 1 1 2.724 P weak similarity to A.thaliana PRL1 protein RPL1B YGL135W 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein RPL20B YOR312C 1 0 0 0 0 0 1 0.992 P 60S large subunit ribosomal protein RPL19A YBR084C-A 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein L19.e none YMR269W 1 0 0 0 0 0 0 -0.782 N weak similarity to C.elegans hypothetical protein CELT23B3 RPL27A YHR010W 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein L27.e none YDR412W 0 0 0 1 0 1 0 -0.940 N similarity to hypothetical protein SPAC29A4.09 - S. pombe SAS10 YDL153C 1 0 1 0 0 1 0 0.549 P involved in silencing RPL9B YNL067W 1 1 0 0 0 0 0 0.695 P ribosomal protein L9.e.c14 FYV7 YLR068W 0 0 0 0 0 0 0 -2.381 N hypothetical protein RPB8 YOR224C 0 0 0 0 1 0 0 -1.474 N DNA-directed RNA polymerase I, II, III 16 KD subunit none YOR287C 0 0 0 0 0 0 0 -2.381 N weak similarity to PITSLRE protein kinase isoforms ROK1 YGL171W 1 0 0 0 1 1 0 0.949 P ATP-dependent RNA helicase NOP6 YDL213C 0 0 0 0 1 1 1 1.125 P weak similarity to potato small nuclear ribonucleoprotein U2B and human splicing factor homolog RPL34B YIL052C 1 1 0 0 0 0 0 0.695 P ribosomal protein L34.e MOD5 YOR274W 0 0 0 0 0 0 0 -2.381 N tRNA isopentenyltransferase DIM1 YPL266W 1 0 0 0 1 1 0 0.949 P rRNA (adenine-N6,N6-)-dimethyltransferase RPS19B YNL302C 0 1 0 0 0 0 0 -0.904 N 40S small subunit ribosomal protein S19.e RPL5 YPL131W 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein L5.e RPL6B YLR448W 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein RPS24B YIL069C 1 1 0 0 0 0 0 0.695 P 40S small subunit ribosomal protein S24.e none YLR022C 1 0 0 0 0 0 0 -0.782 N similarity to C.elegans and M.jannaschii hypothetical proteins RRP9 YPR137W 1 1 0 0 1 1 1 4.202 P protein associated with the U3 small nucleolar RNA, required for pre-ribosomal RNA processing none YNL110C 1 1 0 0 1 1 0 2.427 P weak similarity to fruit fly RNA-binding protein RPL8B YLL045C 1 1 0 0 0 0 1 2.470 P 60s large subunit ribosomal protein L7a.e.B KRE35 YGL099W 0 0 0 0 1 0 0 -1.474 N similarity to putative human GTP-binding protein MMR1 none YPR144C 0 0 0 0 1 0 0 -1.474 N similarity to YDR060w and C.elegans hypothetical protein LSM2 YBL026W 0 0 1 1 1 1 0 0.474 P Sm-like (Lsm) protein RPS21A YKR057W 0 0 0 0 0 0 0 -2.381 N ribosomal protein S21.e RPL39 YJL189W 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein L39.e FPR1 YNL135C 0 0 0 0 1 1 0 -0.649 N peptidyl-prolyl cis-trans isomerase, FK506-binding protein RPS25B YLR333C 1 0 0 0 0 0 0 -0.782 N ribosomal protein S25.e.c12 RPO26 YPR187W 0 0 0 0 1 1 1 1.125 P DNA-directed RNA polymerase I, II, III 18 KD subunit SBP1 YHL034C 0 0 0 0 1 0 0 -1.474 N single-strand nucleic acid binding protein RPL35B YDL136W 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein none YMR233W 0 0 0 0 0 0 0 -2.381 N strong similarity to YOR295w SKI2 YLR398C 0 0 0 0 1 0 0 -1.474 N antiviral protein and putative helicase SDA1 YGR245C 1 0 0 0 1 0 0 0.125 N required for normal organization of the actin cytoskeleton; required for passage through Start RPS17A YML024W 0 1 0 0 0 0 0 -0.904 N ribosomal protein S17.e.A RPS16B YDL083C 0 0 0 0 0 0 0 -2.381 N ribosomal protein S16.e MAK11 YKL021C 1 1 0 0 0 1 0 1.520 P involved in cell growth and replication of M1 dsRNA virus RVB2 YPL235W 1 1 0 0 1 1 1 4.202 P RUVB-like protein DIS3 YOL021C 1 0 0 0 1 1 1 2.724 P 3^-5^ exoribonuclease required for 3^ end formation of 5.8S rRNA RPS7B YNL096C 0 0 0 0 0 0 0 -2.381 N strong similarity to ribosomal protein S7 none YBL028C 0 0 0 0 0 0 0 -2.381 N hypothetical protein - involved in mating-type regulation GCN1 YGL195W 0 0 0 0 1 1 0 -0.649 N translational activator SOF1 YLL011W 0 0 0 0 1 1 0 -0.649 N involved in 18S pre-rRNA production RPS23A YGR118W 1 0 1 0 0 0 0 -0.276 N 40S small subunit ribosomal protein S23.e LRP1 YHR081W 0 0 0 0 1 0 1 0.301 N like rRNA Processing protein involved in regulation of DNA repair and recombination RPL33A YPL143W 0 0 0 0 0 0 0 -2.381 N ribosomal protein L35a.e.c16 none YGR283C 1 0 0 0 0 0 1 0.992 P similarity to hypothetical protein YMR310c RPS6A YPL090C 1 1 0 0 0 0 0 0.695 P ribosomal protein S6.e UTP20 YBL004W 1 0 0 0 1 1 0 0.949 P weak similarity to Papaya ringspot virus polyprotein RPS2 YGL123W 0 0 0 0 0 0 0 -2.381 N 40S small subunit ribosomal protein IPI3 YNL182C 0 0 0 0 1 1 1 1.125 P weak similarity to S.pombe hypothetical protein DRS2 YAL026C 0 0 1 0 0 0 0 -1.874 N P-type ATPase reported to act as an aminophospholipid translocase (flippase) NOG1 YPL093W 1 0 0 0 1 1 0 0.949 P similarity to M.jannaschii GTP-binding protein RPL18A YOL120C 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein S18.e SIR3 YLR442C 0 0 0 0 0 1 0 -1.557 N silencing regulatory and DNA-repair protein SSF2 YDR312W 1 0 0 0 0 1 0 0.042 N protein with a potential role in mating RPL33B YOR234C 1 0 0 0 0 0 0 -0.782 N ribosomal protein L35a.e.c15 RPL21B YPL079W 1 1 0 0 0 0 0 0.695 P ribosomal protein L21 RAT1 YOR048C 0 0 0 0 1 0 0 -1.474 N 5^-3^ exoribonuclease RPL19B YBL027W 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein L19.e RPS8A YBL072C 1 1 0 0 0 0 0 0.695 P ribosomal protein S8.e MAK5 YBR142W 0 0 0 0 1 1 0 -0.649 N ATP-dependent RNA helicase GAR1 YHR089C 1 1 0 0 1 1 1 4.202 P nucleolar rRNA processing protein RPP2A YOL039W 0 0 0 0 0 0 0 -2.381 N acidic ribosomal protein P2.beta RPL12A YEL054C 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein L12.e SSU72 YNL222W 0 0 0 0 1 0 1 0.301 N suppressor of cs mutant of sua7 NUP159 YIL115C 0 0 0 0 0 0 0 -2.381 N nuclear pore protein UTP9 YHR196W 0 0 0 0 1 1 1 1.125 P U3 snoRNP protein MRD1 YPR112C 1 1 0 0 0 0 0 0.695 P similarity to RNA-binding proteins SSF1 YHR066W 1 0 0 0 1 1 0 0.949 P mating protein MRPL23 YOR150W 0 0 0 0 1 0 0 -1.474 N mitochondrial ribosomal protein, large subunit EMG1 YLR186W 1 0 0 0 1 0 0 0.125 N strong similarity to S.pombe hypothetical protein C18G6.07C RRN6 YBL014C 0 0 0 1 0 0 0 -1.764 N RNA polymerase I specific transcription initiation factor UTP22 YGR090W 1 0 0 0 1 1 1 2.724 P similarity to PIR:T40678 hypothetical protein SPBC776.08c S. pombe RPL13B YMR142C 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein RNP1 YLL046C 0 0 0 0 0 0 0 -2.381 N ribonucleoprotein RPL26B YGR034W 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein RPS20 YHL015W 0 1 0 0 0 0 0 -0.904 N ribosomal protein RPS26B YER131W 0 0 0 1 0 0 0 -1.764 N 40S small subunit ribosomal protein S26e-c5 RRB1 YMR131C 0 0 0 0 0 0 1 -0.606 N involved in the regulation of ribosome biosynthesis POP7 YBR167C 0 0 0 0 1 0 0 -1.474 N nuclear RNase P subunit RPL24A YGL031C 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein L24.e.A BUD21 YOR078W 0 0 0 0 1 0 0 -1.474 N weak similarity to YMR172w NHP2 YDL208W 1 1 0 0 1 1 1 4.202 P nucleolar rRNA processing protein RPL11B YGR085C 1 1 0 0 0 0 0 0.695 P ribosomal protein RPL43A YPR043W 1 0 0 0 0 0 0 -0.782 N ribosomal protein L37a.e SPB1 YCL054W 1 0 0 0 1 1 0 0.949 P required for ribosome synthesis, putative methylase RPP2B YDR382W 1 1 1 0 1 0 0 2.109 P 60S large subunit acidic ribosomal protein RPS3 YNL178W 0 0 1 0 0 0 0 -1.874 N ribosomal protein S3.e RPS0A YGR214W 0 0 0 0 0 0 0 -2.381 N 40S ribosomal protein p40 homolog A RPS27B YHR021C 0 1 0 0 0 0 0 -0.904 N ribosomal protein S27.e RPL15A YLR029C 1 1 0 0 0 0 0 0.695 P 60s large subunit ribosomal protein L15.e.c12 SRD1 YCR018C 0 0 0 0 0 0 0 -2.381 N nucleolar protein NAN1 YPL126W 0 0 0 0 1 1 1 1.125 P weak similarity to fruit fly TFIID subunit p85 KRI1 YNL308C 1 0 0 0 0 1 0 0.042 N similarity to S.pombe and C.elegans hypothetical proteins PCH2 YBR186W 0 0 0 0 0 0 0 -2.381 N putative ATPase MRT4 YKL009W 0 0 0 0 1 1 0 -0.649 N mRNA turnover 4 RPC40 YPR110C 1 1 0 1 1 1 1 4.819 P DNA-directed RNA polymerase I, III 40 KD subunit none YDR026C 0 0 1 1 0 0 0 -1.258 N strong similarity to DNA-binding protein Reb1p RPS27A YKL156W 0 1 0 0 0 0 0 -0.904 N ribosomal protein S27.e RPL42A YNL162W 1 0 0 0 0 0 0 -0.782 N ribosomal protein L36a.e RCL1 YOL010W 1 0 0 0 1 1 1 2.724 P similarity to human RNA 3^-terminal phosphate cyclase POP4 YBR257W 1 0 0 0 1 0 1 1.900 P involved in processing of tRNAs and rRNAs RPS18A YDR450W 1 0 0 0 0 0 0 -0.782 N ribosomal protein S18.e.c4 RPL27B YDR471W 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein RPS29A YLR388W 0 0 0 0 0 0 0 -2.381 N ribosomal protein S29.e.A none YCR016W 0 0 0 0 0 0 0 -2.381 N hypothetical protein RPS10A YOR293W 1 0 0 0 0 0 0 -0.782 N ribosomal protein S10.e RPS15 YOL040C 0 0 0 0 0 0 0 -2.381 N 40S small subunit ribosomal protein RPL24B YGR148C 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein L24.e.B GSP1 YLR293C 0 0 0 0 0 1 0 -1.557 N GTP-binding protein of the ras superfamily RPL36A YMR194W 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein none YLR051C 1 0 1 0 0 0 0 -0.276 N similarity to human acidic 82 kDa protein RPS30B YOR182C 1 1 0 0 0 0 0 0.695 P ribosomal protein S30 RPL38 YLR325C 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein UTP5 YDR398W 0 0 1 1 0 1 1 1.342 P U3 snoRNP protein none YGR272C 0 0 0 0 0 0 0 -2.381 N similarity to hypothetical S.pombe protein SPAC12G12.02 SEN1 YLR430W 0 0 0 0 0 1 0 -1.557 N positive effector of tRNA-splicing endonuclease RPS8B YER102W 1 1 0 0 0 0 0 0.695 P ribosomal protein S8.e LSM5 YER146W 0 0 1 1 1 0 1 1.424 P Sm-like (Lsm) protein BRX1 YOL077C 1 0 0 0 1 1 1 2.724 P strong similarity to C.elegans K12H4.3 protein NOP1 YDL014W 1 1 0 0 1 1 1 4.202 P fibrillarin RPL41B YDL133C-A 0 0 0 0 0 0 0 -2.381 N ribosomal protein NIP7 YPL211W 1 0 0 0 1 1 0 0.949 P required for efficient 60S ribosome subunit biogenesis UTP11 YKL099C 1 0 0 0 1 1 0 0.949 P U3 snoRNP protein RPL7B YPL198W 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein PUF6 YDR496C 0 1 0 0 1 1 0 0.828 P similarity to hypothetical human and C.elegans proteins HAS1 YMR290C 1 0 0 0 1 1 0 0.949 P helicase associated with Set1p RPL4B YDR012W 1 1 0 0 0 0 0 0.695 P ribosomal protein L4.e.B NOP16 YER002W 0 0 0 0 1 1 0 -0.649 N weak similarity to chicken microfibril-associated protein RRP46 YGR095C 1 0 0 0 1 0 1 1.900 P involved in rRNA processing RPL40B YKR094C 0 1 0 0 0 0 0 -0.904 N ubiquitin UTP30 YKR060W 1 0 0 0 1 1 0 0.949 P similarity to hypothetical protein S. pombe LCP5 YER127W 1 0 1 1 1 1 0 2.073 P Ngg1p interacting protein UTP4 YDR324C 1 0 0 0 1 1 1 2.724 P U3 snoRNP protein none YHR085W 1 0 0 0 1 0 1 1.900 P weak similarity to fruit fly brahma transcriptional activator RRP8 YDR083W 0 0 0 0 0 0 1 -0.606 N protein involved in cleavage at site A2 in pre-rRNA in the pathway of ribosomal RNA processing RPL15B YMR121C 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein L15.e.c13 TOR1 YJR066W 0 0 0 0 0 0 0 -2.381 N phosphatidylinositol 3-kinase RRN10 YBL025W 0 0 0 1 0 0 0 -1.764 N RNA polymerase I-specific transcription initiation factor RPS1A YLR441C 0 1 1 0 0 0 0 -0.397 N ribosomal protein S3a.e RPL34A YER056C-A 1 1 0 0 0 0 0 0.695 P ribosomal protein L34 GCN20 YFR009W 0 0 0 0 1 0 0 -1.474 N positive effector of Gcn2p RPL14A YKL006W 1 1 0 0 0 0 0 0.695 P ribosomal protein YML6 YML025C 0 0 0 0 1 0 0 -1.474 N mitochondrial ribosomal protein, large subunit RRP43 YCR035C 0 0 0 0 1 1 1 1.125 P rRNA processing protein FPR3 YML074C 0 1 0 0 0 1 0 -0.079 N proline cis-trans isomerase RPL10 YLR075W 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein NOP12 YOL041C 1 0 0 0 1 1 1 2.724 P weak similarity to M.sativa nuM1, hnRNP protein from C. tentans and D. melanogaster, murine/bovine poly(A) binding protein II, and Nsr1p RPS17B YDR447C 0 1 0 0 0 0 0 -0.904 N ribosomal protein S17.e.B RPL16B YNL069C 0 0 0 0 0 0 0 -2.381 N 60S large subunit ribosomal protein RRN11 YML043C 0 0 0 0 0 0 0 -2.381 N RNA polymerase I specific transcription initiation factor none YLR145W 0 0 0 0 0 0 0 -2.381 N hypothetical protein UTP6 YDR449C 0 0 0 0 1 1 1 1.125 P U3 snoRNP protein RPS25A YGR027C 1 0 0 0 0 0 0 -0.782 N ribosomal protein S25.e.c7 none YNR004W 0 0 0 1 0 0 0 -1.764 N weak similarity to bovine interferon gamma precursor none YHR197W 0 0 0 0 1 1 1 1.125 P weak similarity to PIR:T22172 hypothetical protein F44E5.2 C. elegans RPL40A YIL148W 0 0 0 0 0 0 0 -2.381 N ubiquitin SIK1 YLR197W 1 0 0 0 1 1 1 2.724 P involved in pre-rRNA processing RPL11A YPR102C 1 1 0 0 0 0 0 0.695 P ribosomal protein L11.e none YLR009W 1 1 0 0 1 1 0 2.427 P similarity to ribosomal protein L24.e.B NOP10 YHR072W-A 1 1 0 0 0 0 0 0.695 P nucleolar rRNA processing protein NSP1 YJL041W 0 0 0 0 0 0 0 -2.381 N nuclear pore protein LSM3 YLR438C-A 0 0 0 0 1 0 1 0.301 N Sm-like (Lsm) protein IMP4 YNL075W 1 0 1 0 1 0 0 0.632 P component of the U3 small nucleolar ribonucleoprotein RPS1B YML063W 0 1 0 0 0 0 0 -0.904 N ribosomal protein S3a.e RPL21A YBR191W 1 1 0 0 0 0 0 0.695 P ribosomal protein L21.e RPA14 YDR156W 0 0 1 0 0 0 0 -1.874 N DNA-directed RNA polymerase I, A14 subunit YAR1 YPL239W 0 0 0 0 0 0 0 -2.381 N ankyrin repeat-containing protein UTP10 YJL109C 1 0 0 0 1 1 1 2.724 P U3 snoRNP protein RPP1B YDL130W 0 0 1 0 0 0 0 -1.874 N 60S large subunit acidic ribosomal protein L44prime none YOR253W 0 0 0 0 0 0 0 -2.381 N weak similarity to ^separation anxiety protein-like^; A. thaliana MTR3 YGR158C 0 0 1 1 1 0 0 -0.350 N involved in mRNA transport RPL22B YFL034C-A 0 0 0 0 0 0 0 -2.381 N ribosomal protein RRP4 YHR069C 1 0 0 0 1 1 1 2.724 P 3^-5^ exoribonuclease required for 3^ end formation of 5.8S rRNA UAF30 YOR295W 0 0 0 0 0 0 0 -2.381 N subunit of RNA polymerase I transcription factor RPL31A YDL075W 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein L31.e RPS19A YOL121C 1 1 0 0 0 0 0 0.695 P 40S small subunit ribosomal protein S19.e LOC1 YFR001W 0 0 0 0 1 1 0 -0.649 N weak similarity to rabbit triadin Spp41p SLX9 YGR081C 0 0 0 0 1 0 0 -1.474 N weak similarity to mammalian myosin heavy chain RPS4B YHR203C 1 1 0 0 0 0 1 2.470 P ribosomal protein S4.e.c8 SNM1 YDR478W 0 0 0 0 0 0 0 -2.381 N RNA binding protein of RNase MRP RPS7A YOR096W 1 0 0 0 0 0 0 -0.782 N ribosomal protein LSM1 YJL124C 0 0 1 1 1 1 1 2.249 P Sm-like (Lsm) protein RPA12 YJR063W 0 0 1 0 1 1 0 -0.143 N DNA-directed RNA polymerase I, 13.7 KD subunit DBP6 YNR038W 1 0 0 0 0 0 0 -0.782 N RNA helicase required for 60S ribosomal subunit assembly UTP21 YLR409C 1 0 1 0 1 1 1 3.231 P strong similarity to S. pombe beta-transducin NSA1 YGL111W 1 0 0 0 1 1 0 0.949 P weak similarity to hypothetical protein S. pombe RPL2A YFR031C-A 0 1 0 0 1 0 0 0.004 N ribosomal protein L8.e RPS0B YLR048W 0 0 0 0 0 0 0 -2.381 N 40S ribosomal protein p40 homolog B RAI1 YGL246C 0 0 0 0 1 0 0 -1.474 N weak similarity to C.elegans dom-3 protein UTP18 YJL069C 1 0 1 0 1 1 1 3.231 P similarity to C.elegans hypothetical protein DIP2 YLR129W 1 1 0 0 1 1 1 4.202 P Dom34p-interacting protein RPL32 YBL092W 1 1 1 0 0 0 0 1.202 P 60S large subunit ribosomal protein L32.e RPS22A YJL190C 0 0 0 0 0 0 0 -2.381 N ribosomal protein S15a.e.c10 CAM1 YPL048W 0 0 0 0 1 0 0 -1.474 N translation elongation factor eEF1 gamma homologue LSM7 YNL147W 0 0 1 1 1 1 0 0.474 P Sm-like (Lsm) protein RPS24A YER074W 1 1 0 0 0 0 0 0.695 P 40s small subunit ribosomal protein S24.e DHR2 YKL078W 0 0 0 0 0 1 0 -1.557 N RNA helicase, involved in ribosomal RNA maturation none YKR081C 0 1 0 0 1 1 0 0.828 P strong similarity to hypothetical protein S. pombe none YPL146C 1 0 1 0 0 1 0 0.549 P weak similarity to myosin heavy chain proteins FES1 YBR101C 0 0 0 0 0 0 0 -2.381 N Hsp70 nucleotide exchange factor MRPS28 YDR337W 0 0 0 0 1 0 0 -1.474 N mitochondrial ribosomal protein, small subunit RRP5 YMR229C 1 1 0 0 0 1 1 3.295 P processing of pre-ribosomal RNA CSL4 YNL232W 0 0 0 0 1 0 1 0.301 N core component of the 3^-5^ exosome NOP7 YGR103W 1 0 0 0 1 1 1 2.724 P pescadillo homolg, required for essential steps leading to synthesis of 60S ribosomal subunits RRN9 YMR270C 0 0 0 1 0 0 0 -1.764 N RNA polymerase I specific transcription initiation factor RPS14A YCR031C 1 1 0 0 0 0 0 0.695 P 40S Ribosomal protein S14.e RPS28A YOR167C 1 0 0 1 0 0 0 -0.165 N 40S small subunit ribosomal protein S28.e.c15 HEF3 YNL014W 0 0 0 0 0 1 0 -1.557 N translation elongation factor eEF3 homolog POP6 YGR030C 0 0 0 0 1 0 0 -1.474 N required for processing of tRNAs and rRNAs MTR4 YJL050W 1 0 0 0 1 1 1 2.724 P involved in nucleocytoplasmic transport of mRNA RPB10 YOR210W 0 0 0 0 1 0 0 -1.474 N DNA-directed polymerase I, II, III 8.3 subunit ECM16 YMR128W 1 0 0 0 1 0 0 0.125 N putative DEAH-box RNA helicase RPL16A YIL133C 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein LSM6 YDR378C 0 0 1 1 1 0 1 1.424 P Sm-like (Lsm) protein RPL31B YLR406C 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein L31.e.c12 FAL1 YDR021W 0 1 0 0 0 0 0 -0.904 N involved in maturation of 18S rRNA SNU13 YEL026W 1 1 0 0 1 1 0 2.427 P component of the U4/U6.U5 snRNP RPS11B YBR048W 0 0 0 0 0 0 0 -2.381 N ribosomal protein S11.e.B RPL12B YDR418W 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein L12.e MAK21 YDR060W 0 0 0 0 1 0 1 0.301 N protein required for 60S ribosomal subunit biogenesis RPS28B YLR264W 1 0 0 1 0 0 0 -0.165 N 40S small subunit ribosomal protein S28.e.c12 none YNR054C 1 0 0 0 1 1 0 0.949 P similarity to C.elegans hypothetical protein CEESL47F SFP1 YLR403W 0 0 0 0 0 1 0 -1.557 N zinc finger protein RPL37B YDR500C 0 0 0 0 0 0 0 -2.381 N ribosomal protein L.37.e none YLR106C 1 0 0 0 1 1 0 0.949 P similarity to Kaposi^s sarcoma-associated herpes-like virus ORF73 homolog gene NOC2 YOR206W 1 0 0 0 1 1 1 2.724 P crucial for intranuclear movement of ribosomal precursor particles SGS1 YMR190C 1 0 0 0 1 1 0 0.949 P DNA helicase none YGR251W 0 0 0 0 0 0 0 -2.381 N hypothetical protein RIX7 YLL034C 1 0 0 0 1 1 0 0.949 P AAA-type ATPase required for biogenesis and nuclear export of 60S ribosomal subunits RRS1 YOR294W 1 1 0 0 0 0 0 0.695 P regulator of ribosome synthesis NOP4 YPL043W 0 0 0 0 1 1 0 -0.649 N nucleolar protein CDC14 YFR028C 0 0 0 0 1 1 0 -0.649 N dual specificity phosphatase GLC7 YER133W 1 0 0 1 1 1 1 3.341 P ser/thr phosphoprotein phosphatase 1, catalytic chain ARX1 YDR101C 0 0 0 0 1 1 1 1.125 P required for 60S pre-ribosome formation none YGR145W 0 1 1 0 1 1 0 1.335 P similarity to C.elegans hypothetical protein RPL17B YJL177W 0 1 0 0 0 0 0 -0.904 N 60s large subunit ribosomal protein L17.e HMO1 YDR174W 0 0 1 0 0 1 0 -1.050 N Non-histone protein FOB1 YDR110W 0 0 0 1 0 0 0 -1.764 N DNA replication fork blocking protein PRP12 YMR302C 0 0 0 0 0 1 0 -1.557 N involved in early maturation of pre-rRNA none YMR093W 1 0 0 1 1 1 1 3.341 P weak similarity to Pwp2p CGR1 YGL029W 1 0 0 0 0 0 0 -0.782 N Coiled-coil protein, may play a role in ribosome biogenesis RPP1A YDL081C 0 0 1 1 0 0 0 -1.258 N 60S large subunit acidic ribosomal protein a1 POL5 YEL055C 0 0 0 0 1 1 1 1.125 P DNA polymerase V CSM1 YCR086W 0 0 1 1 0 0 0 -1.258 N involved in nuclear migration LSM4 YER112W 0 0 0 1 1 1 0 -0.032 N Sm-like (Lsm) protein CIC1 YHR052W 0 1 0 0 1 1 1 2.603 P adaptor protein specifically linking the 26S proteasome to its substrate, the SCF component Cdc4 RPL2B YIL018W 1 1 0 0 0 0 0 0.695 P 60S large subunit ribosomal protein L8.e RPL22A YLR061W 0 1 0 0 0 0 0 -0.904 N ribosomal protein SPO12 YHR152W 0 0 0 1 0 0 0 -1.764 N sporulation protein RPL23A YBL087C 0 0 0 0 1 0 0 -1.474 N 60S large subunit ribosomal protein L23.e RPL1A YPL220W 1 1 0 0 0 0 0 0.695 P ribosomal protein RPL7A YGL076C 1 0 0 0 0 0 0 -0.782 N 60S large subunit ribosomal protein L7.e.A none YML093W 0 0 0 0 0 1 0 -1.557 N similarity to P.falciparum liver stage antigen LSA-1 DBP10 YDL031W 1 0 0 0 1 1 0 0.949 P putative RNA helicase involved in ribosome biogenesis RPA43 YOR340C 0 0 0 0 1 1 1 1.125 P DNA-directed RNA polymerase I, 36 KD subunit RPL26A YLR344W 0 0 0 0 0 0 0 -2.381 N 60S large subunit ribosomal protein