cluster_id	splitr_sequence	splitr_count	splitr_span_pvalue	splitr_pos_pvalue	splitr_min_pvalue	adjacent	altsplice	break_adj_entropy1	break_adj_entropy2	break_adj_entropy_min	break_predict	breakpoint_homology	breakseqs_estislands_percident	cdna_breakseqs_percident	concordant_ratio	deletion	est_breakseqs_percident	eversion	exonboundaries	expression1	expression2	gene1	gene2	gene_align_strand1	gene_align_strand2	gene_chromosome1	gene_chromosome2	gene_end1	gene_end2	gene_location1	gene_location2	gene_name1	gene_name2	gene_start1	gene_start2	gene_strand1	gene_strand2	genome_breakseqs_percident	genomic_break_pos1	genomic_break_pos2	genomic_strand1	genomic_strand2	interchromosomal	interrupted_index1	interrupted_index2	inversion	library_name	max_map_count	max_repeat_proportion	mean_map_count	min_map_count	num_multi_map	num_splice_variants	orf	read_through	repeat_proportion1	repeat_proportion2	span_count	span_coverage1	span_coverage2	span_coverage_max	span_coverage_min	splice_score	splicing_index1	splicing_index2	probability
124463	ATCTTGACTTCCAGATGGAACAGTACATCTATAAAAGGAAAAGTGATGGCATCTATATCATAAATCTGAAGAGGACCTGGGAGAAGCTTCTGCTGGCAGCTCGTGCTATTGTTGCCATTGAAAACCCTGCTGATGTCAGTGTTATATCCTCCAGGAATACTGGCCAGAGGGCCGTGCTAAAGTTTGCTGCTGCCACTGGAGCCACTCCAATTGCTGGCCGCTTCACTC|CTGGAGCCACTCCAATTGCTGGATGCTTCACTTCTGGAACCT	2	0.98329805583109	0.686645868634774	0.871265487878886	N	N	3.52824003904223	3.58274509081332	3.52824003904223	splitr	0	0.119047619047619	0.119047619047619	0	N	0.238095238095238	N	N	732	0	ENSG00000229839	ENSG00000219361	+	+	2	6	62374016	81180145	intron	intron	AC018462.2	RP11-250B2.2	62296582	81179788	-	-	0.119047619047619	62373824	81179876	+	+	Y	2.66946450954699	1	N	SKBR3_13_2_1	24	0	17.6666666666667	7	3	1	N	N	0	0	3	0.860894806106457	0.413891733705027	0.860894806106457	0.413891733705027	2	1	0	0.60524179975777
77024	TTTCCCGGAGTAGTAAGTTACAATATGGGAGATTATTCCGAAGCCTGGTAGGATGAGAATATAAACTTCAGGGTGACCGAAAAATCAGAATAGGTGTTGGTATAGAATGGGGTCTCCTCCTCCGGCTGGGTCGAAGAAGGTGGTGTTGAGGTT|GCAGACACTGACCTCACCAAGAGGGCGGGAGAACTCACTGATGATGAGGTGGAACGTGTGATCACCGTTATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCTTGAACAGACAGAAGGATGTAAAGGATGGAAAATA	7	1	0.535503415064147	0.868731732421349	N	N	3.41952156054875	3.30335451653084	3.30335451653084	splitr	16	0.013986013986014	0	0	N	0.0629370629370629	N	N	0	803	ENSG00000237973	ENSG00000081154	-	+	1	3	567996	101313281	intron	intron	RP5-857K21.6	PCNP	566454	101292939	+	+	0.013986013986014	567093	101295650	-	+	Y	1	1.17612882200555	N	SKBR3_13_2_1	16	0	11.2222222222222	6	9	1	N	N	0	0	9	1.20028602774458	1.39895405992299	1.39895405992299	1.20028602774458	2	0	17.2222222222222	0.60524179975777
38090	CCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCAGGTGCCACCACGCCCGGCTAATTTTTTGTATTTTTGTTTGTTTGTTTTGTTTTTTTGAGACAGAGTCTCACTGTGTCGCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGC|GATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGACATGTGCCACCATGCCCGGCTAATTTTTTTTTTGTATTTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCCA	1	0.913570617737712	0.899266171301115	0.897571427984624	N	Y	3.5514509715161	3.55231620741665	3.5514509715161	splitr	346	0.881944444444444	0.770833333333333	1	N	0.569444444444445	N	N	90	0	ENSG00000143458	ENSG00000228114	-	-	1	4	151098018	191010176	utr3p	upstream	GABPB2	DUX4L3	151043054	191008560	+	+	0.347222222222222	151092129	121899838	-	-	Y	-	-	N	SKBR3_13_2_1	5551	1	5070.5	4590	2	1	N	N	0.596491228070175	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
138506	TCGGGCGCGGTGCCGGGCACCCATGTCTCGGTAGCACTGGGTGACAGCGCCTGCGGTGGTCAGGTCCCGGTATTCCCGGTACATGTTGTGGGTGCCGCTCCGGGAGTCATAGCGCAGCCAGATCCCGAAGTTCTTCACCCGCAGGGGGGACTTCTCAAACACCTGCCCACAGTAGACAATCTCCCCTGAAGACTTCTTCATCTTCTTTAACTGAGATACAAAGTACCAGAAGCGGGACTTGGCGACGACATGATTAGGCGCAAAGATTCGCATGCGGTAGAGGGGCGGCGTGTG|GCGGCGGCGGCGGCGGCGGCTGTTGGGGGTGGGGAGACGCGCGGCGAGGAGACGAGCGAGGTCAGCGAGTTT	1	0.466787698905324	0.612610548302747	0.693969709788871	N	N	3.36720643949681	2.68330325573335	2.68330325573335	splitr	33	0.180555555555556	0.180555555555556	0	N	0.236111111111111	N	N	15959	2255	ENSG00000105640	ENSG00000172939	-	-	19	3	17974962	38296979	coding	utr5p	RPL18A	OXSR1	17970730	38206580	+	+	0.180555555555556	17972150	38207266	-	-	Y	-	0.249474946942852	N	SKBR3_13_2_1	7	0.15625	5	3	2	1	N	N	0	0.15625	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	17.5	0.60524179975777
138110	GTTTTACTATATGATAGGCATGTGATTGGTGGGTCATTATGTGTTGTCGTGCAGGTAGAGGCTTACTAGAAGTGTAAAAACGTAGGCTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATTGTGAAGATGATAAGTGTAGAGGGAAGGTTAATAGTTGATATTGCTAGTGTGGCGCTTCCAATTAGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGGTTAGGCGTACGGCCAGGGCTATTGGTTGAATGAGTAGGCTGATGG|TTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATG	1	0.189684295870298	0.704121951840997	0.776581847210919	N	N	3.66914559884387	3.76426113588353	3.66914559884387	splitr	2	0.03125	0	0	N	0	N	N	3	0	ENSG00000230021	ENSG00000212932	-	-	1	21	659930	48111157	intron	upstream	RP5-857K21.4	RPL23AP4	536816	48110676	-	+	0.03125	569512	9827035	-	-	Y	0.828962371721779	-	N	SKBR3_13_2_1	4	1	3.5	3	2	2	N	N	0	1	2	0.827783467410055	0.488392245771932	0.827783467410055	0.488392245771932	2	0	-	0.60524179975777
96377	CCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCACCCCCCCCTCCCTCCCCCCCCCCCCCCCCCCCCCCCCCC|CCCCTCCTCCCCCCCCTCCCCTGCAGCCCCACGGAGTCTACGCCGGGAGGAGTAGGAGGGCCGCTGCGGTAAGCTTTGAAGCCTAGGGTATGGGCCCAGGTGGATAGGCCACAGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAAC	3	0.0139582090780861	0.397375327750185	0.686215388897037	N	N	1.08988720533	2.83986884469249	1.08988720533	splitr	21	0	0	0	N	0	Y	N	0	0	ENSG00000230876	ENSG00000252318	-	+	2	2	33151760	133038738	intron	upstream	AL121656.4	AC097532.1	33050510	133038647	+	-	1.11022302462516e-16	33141375	133038834	-	+	N	1	-	N	SKBR3_13_2_1	26	1	8.22222222222222	2	9	2	N	N	1	1	9	0.836061302084155	0.885728310128759	0.885728310128759	0.836061302084155	1	0	-	0.60524179975777
76827	GGGGGGGGTGCTGGGCACGCTGTGGCCCCCAGGGGGGACGATGATAGGGCCCATGGGCACGCGCTTGGGTGTGCTGGCGGGGGAGCTGTGGTTGGTGGCCGGAGAGGACACGGGGGACGACTCGCTGCTCAGTGAGGAC|CCTGGTAAGTAATACAGAGGCGGCTTCAATCCAAACATGGTTCAAATTAGAATTCCATAGTGGCCAGAGAGGGATGAAGAAGGAAAATAATATTAAAACCCAGGAATGAACAAAAAGCACCGTTCAAGCCACGGCGCTCAAAAATGTCCAAAACAATAAAATAAAGGCAGAAGAGCGATCCCGAGAGCGACGAAAAAAAAAAATCAGTCTT	9	1	0.900487091791425	0.89555362891048	N	Y	3.17780074852469	3.8097595335968	3.17780074852469	splitr	350	1	0	0	N	1	Y	N	4520	18	ENSG00000131149	ENSG00000203451	-	+	16	16	85709810	90233540	coding	upstream	KIAA0182	AC133919.1	85645023	90232651	+	+	0	85682159	85589970	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	4	N	N	0	0	21	1.20028602774458	1.76317878558342	1.76317878558342	1.20028602774458	1	-	-	0.60524179975777
42809	CCCAAAGAGACCATGGAGATTTGGCCCAGTCTTGTGCTTGCCTCCCTTTTCAACGGTGTGGCACTGGGAACACTTCATAATAAAAATCTTCTTGCCTTTCTCAACATCACCCATATTTAATTCTCTTTTTAGTCGCTGGCACAACGAACACTCCC|GCTCCTTATCCTTCTCCTCCGACCCCCTAACGACCCCCCTCCTAATACTAACTACCTGACTCCTGCCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAATGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATGACATTCACAGCCATAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCCTGGCTATCATCACCCGATGAGGCAACCAACCAGAACGCCTGAACGCAGGTACATACTTCCTATTCTACACCCTAGTAGGCTCCCTCCCCCTACTCATCGCACTAAT	1	1.07455451916739e-06	0.526775457519482	0.600084425908804	N	N	3.52511032450902	2.88317282605627	2.88317282605627	splitr	5	0	0	0	N	0	N	N	4965	31	ENSG00000172115	ENSG00000132570	-	+	7	5	25164980	134343649	utr5p	intron	CYCS	PCBD2	25159710	134240596	-	+	0	25164851	134263572	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	15	0	7.66666666666667	2	3	1	N	N	0	0	3	0.985062326217965	1.19200819307048	1.19200819307048	0.985062326217965	2	-	0.666666666666667	0.60524179975777
135437	AGGAGCCCCAGCAGGAGTAGCAGGACACCCGTTCCGAAGTCTGGCTCCGTCTAGGAACCCCCAGATTCCTGGATTTTATTTCAGATCCACTCCCGCTTCTCTACAGGTGGTAGGAGGGTGTCCCGACTTCGGACAGAGAAGTCAGAGGCGGGGGGGAGC|CCTGGAGCTGGCCAGTGCTGTGAAGGAGCAGTATCCGGGCATCGAGATCGAGTCGCGCCTCGGGGGCACAGGTGAGGCTCGCAGAACACCTGCTGGGTCAGTCTGTGCTCTGAATCCCAGCTCTCCCGCTTTCTAGTTCTGACATTGGCTGCTTTATGTAAAGTGCCCGCAGTGCC	1	1	0.899266171301115	0.897571427984624	Y	Y	3.20128492750669	3.51273879191798	3.20128492750669	splitr	335	0	0	0	Y	0	N	N	4498	4549	ENSG00000141738	ENSG00000141741	-	+	17	17	37903545	37887040	utr5p	coding	GRB7	C17orf37	37894187	37885409	+	-	0	37894224	37886517	-	+	N	-	3.83178260193308	N	SKBR3_13_2_1	1	0.120689655172414	1	1	0	2	N	Y	0	0.120689655172414	6	1.18373035839638	1.35756488655249	1.35756488655249	1.18373035839638	1	-	222.666666666667	0.60524179975777
75760	CCAGTCTTTTGATGAGTTTGTTGAGAGTGGATGTGAGAGCCAGCATTGCCCGATCCCGCTCTGACTCCTTCTTCAGCCCATCTGGGTCCAGCTCTTTCTCTGTCTCCGAACGGAGCCGGTCTCGGTCTGACGGAAGCAGGATCCCTTCCAGTTCCTTCTCAAATTCTCCCAGTAACTGCCGTTCATCCTCATCTTCATCCTCATCCTCATCCTCATCCTCCTCTTCTTCC|TTCTTCGAAACCACACTTATCCCCACCCTGGCTATCATCACCCG	1	0.96986908066308	0.612610548302747	0.693969709788871	N	N	2.41411967227862	3.37295958784206	2.41411967227862	splitr	1	0	0	0	N	0.0909090909090906	N	N	2933	31	ENSG00000135506	ENSG00000132570	-	+	12	5	58115338	134343649	coding	intron	OS9	PCBD2	58087738	134240596	+	+	0	58112033	134263366	-	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	3	-	1	0.60524179975777
60350	GCTCTGTCAACTCCGTCTCATTGAGGGTCCTGAGGAAGTTGATCTCATCATTCAGGGCATCCACCTTGGCCTCCAGCTCCACCTTGCTCATGTAGGCAGCATCCACATCCTTCTTCAGCACCACAAACTCATTCTCAGCAGCTGTGCGGTGGTTAATTTCATCTTCGTACTTATTCTTGAAGTCCTCCACC|TCAGACACCCCCTTTGCCACCTTTGCCTCCAATACCAGCTCTTCCACAGCAACCACCTCTGCCTCCTTCTCAGCCAGCATTTAGTCAGGTTCCTGCTTCCAGTACTTCAACTTTGCCCCCTTCTACTCACTCAAAGACATCTGCTGTGTCCTCTCAGGCAAATTCTCAGCCCCCTGTACAGGTT	1	0.00340813431777197	0.205558172728075	0.155228020814782	N	N	3.50785087947327	3.20443756997885	3.20443756997885	splitr	8	0.00543478260869568	0.00543478260869568	0	N	0.0271739130434782	N	N	34840	20564	ENSG00000135480	ENSG00000167258	-	-	12	17	52662180	37690800	coding	coding	KRT7	CDK12	52626954	37617739	+	+	0.00543478260869568	52629130	37627723	-	-	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
138061	CCAGTAATGGCCCTCTGGAATTTGACTGCTCGGCGGGTTCTTTTCTTTTGAATTTCTTCCGACTGTCCCT|ACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGACTTGGCGGAATCAGCGGGGAAAGAAGACTCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAA	4	0.271150800715999	0.516083717239657	0.371853628617726	N	N	3.13020570604811	3.51360402781852	3.13020570604811	splitr	14	0.142857142857143	0	0	N	0.171428571428571	N	N	5060	0	ENSG00000114391	ENSG00000226958	-	-	3	X	101405626	108297792	coding	intron	RPL24	RN28S1	101399935	108297361	-	-	0.185714285714286	101404672	108297537	+	-	Y	-	1	N	SKBR3_13_2_1	20	1	18	16	2	1	N	N	0	1	2	0.587726261861139	0.720171616646748	0.720171616646748	0.587726261861139	2	-	0	0.60524179975777
87812	GGGACGATGATAGGGCCCATGGGCACGCGCTTGGGTGTGCTGGCGGGGGAGCTGTGGTTGGTGGCCGGAGAGGACACGGGGGACGACTCGCTGCTCAGTGAGGAC|CCTGCACCAGTAAGGTCTGGTCCGTCCTCCTCCCGGCTGCTCTGCAGACACTGTGCTGGCCTCAGCTCCTGGGCCATCCTGGGGCCTCTGGGCAGGGTCTCCGTGGGGGCGCGTGGCCGGGTCTCGGACTCCCGGGTGGGAGGGTGGCTGGCTGC	1	1	0.800133926999915	0.844771979185218	N	Y	3.17780074852469	3.43209143223268	3.17780074852469	splitr	260	0	0	0	N	0	Y	N	4520	18	ENSG00000131149	ENSG00000203451	-	+	16	16	85709810	90233540	coding	upstream	KIAA0182	AC133919.1	85645023	90232651	+	+	0	85682159	85391250	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	4	N	N	0	0	2	0.778116459365451	0.827783467410055	0.827783467410055	0.778116459365451	1	-	-	0.60524179975777
71323	TCTTCAACTGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCT|GCGAGCGGGCCCCCCGGGGGGCGGGGCATCCCCTGGGCCAGACGCAGGGCGGAGCGGGGTCATCGCTGGCACGCGGAAGGCCCTCATAAGGCCCTCGCTGCCGGCACCGTGGCCTCCCACCCACTCGGGGCGCTCGCTTCACCTCATGCCCGCCTCAGTGGCTCGGGGCCGGAGCTGCGGCCACTTCCTGACCGGAAGGCCGAGCCCCACCTGGCCTGACAACATGGCGGCCGGGAGAAGGCCCCCCCCCCCCCCCCCCCCCGCCCCGCACACCGCCAGGCCTCTG	5	0.00166140803214429	0.108620056787806	0.222825929824358	N	N	3.47911741325579	2.64554959799161	2.64554959799161	splitr	1	0	0	0	N	0	N	N	0	498	ENSG00000251948	ENSG00000171316	+	-	19	8	24184165	61779465	intron	intron	AC092279.1	CHD7	24184075	61591337	-	+	0	24184150	61626725	+	-	Y	1	0.651710862186981	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	1	0.413793103448276	2	0.463558741749631	0.480114411097832	0.480114411097832	0.463558741749631	2	0	4	0.60524179975777
27426	TACAGTCTCTGGTTCTTGTTTAACAGGAACTGCTGCTTCGGTCTCCAAACCTAGTTCTAATGCACTAAGTGGCACTGACTGCTGAACTGACGGGGTAGGCATTGGAGTTGCAAGCCCTGCATCTCCACCATCAATATCAAAGAGGTCATTCGGACTAATTCCACTCTCACTCAAAGCAGCAAGCAGTAAATCTTGCCCTGGCTCCACCAT|TTTCCCCGCGGGACCCGGCGCCAGCACAGCTCCTCCCGGGAGGTGTGAGTTTGAAGGACCAGAGGCGACTGGAGCGGAGGCGGCGGTGGCGGCGGCAGCAGCGGCGTCCTGCTCTGCCTACCTCCCCGCCGCCATCTTGACGCCCCTCCCCCAGC	8	1	0.719044865002331	0.477826557083424	Y	Y	3.38809011260573	2.95960396827598	2.95960396827598	splitr	365	1	0	0	Y	0.987096774193548	N	N	1199	8	ENSG00000139697	ENSG00000256092	-	-	12	12	123834988	123850660	coding	upstream	SBNO1	RP13-942N8.1	123773656	123849500	-	+	0	123834988	123849248	+	-	N	-	-	N	SKBR3_13_2_1	1	0.211538461538462	1	1	0	1	N	Y	0	0.211538461538462	31	1.71351177753881	1.29134220915969	1.71351177753881	1.29134220915969	4	-	-	0.60524179975777
133919	TCATCACTCAGGTCTGAGCTGTGCAGAGCTGGTTCCAGTGGCTGCAGGAACCACAGTCGCAGACCTGGAAGAAGCAAGGATCCTCCCCAAGAGTCTGCAGAGGGAGCGCATTTCTGCCCACACCTTGATTTTGGACTTGTGGCCTCCAGAA|CTTTAGCTTCTGAACATACAGCCAAAAATCCATCTTCTGTCACTGCTTTAAACGAAGGTCTGACTCCTCATGTATCTCTGCCCAGGAACACTTTCTTATTGGCAGAATCCAGTAAAACAAATGCAAACACACCATCCAACACACAAATTGTTTGCTCAATTCCTCCT	1	0.7896017783922	0.163783040919641	0.102428735043176	Y	Y	3.48912663185998	3.49744043328497	3.48912663185998	splitr	318	1	0	0	Y	0	N	N	4	0	ENSG00000163060	ENSG00000215703	+	-	2	2	95542574	95558501	downstream	downstream	TEKT4	AC097374.2	95537178	95552606	+	-	0	95547183	95552604	+	-	N	-	-	N	SKBR3_13_2_1	9	0.573333333333333	5	3	3	1	N	Y	0.573333333333333	0	3	1.18373035839638	0.918839648825161	1.18373035839638	0.918839648825161	4	-	-	0.60524179975777
119609	CGGGAATGCTAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACT|AAAAAAAAAAAAGGCCAGGCGCAGTGCTGTGGCTCATGCCT	8	0.999880106013406	0.046328107468559	0.0910071316110105	N	Y	3.23999710710482	3.08767853656852	3.08767853656852	splitr	16	0.365853658536585	0.365853658536585	0	N	0.463414634146342	N	N	14698	362	ENSG00000187514	ENSG00000162769	+	-	2	1	232578251	213072705	utr3p	utr3p	PTMA	FLVCR1	232571605	213031597	+	+	0.365853658536585	232577586	213070219	+	-	Y	-	-	N	SKBR3_13_2_1	128	0.519230769230769	56.3	8	10	1	N	N	0.240384615384615	0.519230769230769	10	1.5231215800345	0.430447403053228	1.5231215800345	0.430447403053228	2	-	-	0.60524179975777
140908	GAAAAGGAGCCCTAACTCATTGCCCTCATCTTCTTCCAAGAAGTGGCATCAACATACAAGAGGCATGAATGGAT|GAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGTGGAATCCGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGC	1	0.252733198604285	0.390564714822603	0.421349522516249	N	N	3.48440655328462	3.5580693557619	3.48440655328462	splitr	12	0.148648648648649	0	0	N	0.148648648648649	N	N	6770	0	ENSG00000089597	ENSG00000198626	-	-	11	1	62414104	238129359	utr3p	intron	GANAB	RYR2	62392298	237205505	-	+	0.148648648648649	62392940	237766474	+	-	Y	-	1	N	SKBR3_13_2_1	10	1	7	4	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	0	0.60524179975777
132390	CACTTCACCATAGTGGACAAAGCCACCCAGAGGGTTGATGCTCTTGTCAGATAGGTCATAGTCAGTGGAGGCATTGTTCTTGATCAGCTTGCCGTCCTTGATAAGGTAGCCCTGGCCAATCTTATAAATCTTCTTGTTGATCTCAGTGCGGTGATGGTAGCCTTTCT|CATCCTCTTTGCCATGTGAAGGAGCCGTCTCCACCTCCCATAGTTCTCCCGCGTCTGGTTGGCCCCGTGTGTTC	1	1	0.205558172728075	0.155228020814782	N	N	3.51952501003312	3.53039946453785	3.51952501003312	splitr	17	0	0	0	N	0.0675675675675675	N	N	22077	1665	ENSG00000100316	ENSG00000135390	-	+	22	12	39716394	54071182	coding	coding	RPL3	ATP5G2	39708887	54058950	-	-	0	39710728	54059116	+	+	Y	-	5.67119836001776	N	SKBR3_13_2_1	24	0	13.5	3	2	1	N	N	0	0	2	0.811227798061854	0.653948939253943	0.811227798061854	0.653948939253943	2	-	285.5	0.60524179975777
126866	CCTCCCGTGGCCGCTTCGCCCTCCTGGTGACGTCCTGCTGCAACTCCCCGAGCACTGCCTGTCTTCCCGCTCTCCAGCCCTCGAGGCTCCGGCATAGGCCTGAGAAAGCCGTGCCGGAGCTGCCCCTGTGCCTGCTACTAAATGAATTGCGGTGGGTGAGGTGGCAGCTGGGGACCCCTCTGTCCTGTGTCCCCTGCCATGTCCCTGTCT|CTCCCTTTCACCCTTGCCCTCCAGTCCTCTACCTCTGGCCTGCCCCTATTTCTGAAAGCTTCTTCCAGTCCCTGATCTGGCTCATTCCCCACCTTCAACTCCCACCTTACATGTCTCACACTATCCCATGGTTGGCATTACACTCACTCCTGTTCCCTTATTCTTCATTCCCAGTAATTCC	1	0.0307205019248761	0.447538936456759	0.5	N	N	2.84868621149354	2.9699440564474	2.84868621149354	splitr	9	0	0	0	N	0	N	N	83603	0	ENSG00000130600	ENSG00000225065	-	-	11	20	2022700	33302432	intron	intron	H19	RP11-346K17.4	2016406	33284722	-	-	0	2018347	33298397	+	-	Y	-	1	N	SKBR3_13_2_1	1	0	1	1	0	3	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	0	0.60524179975777
36314	GGAGAAAGGGAGGGGTGAAATGAGAAGAGCCCCGTTCTTCCTCAGTGCTGGGGGGTTGGAGACACCACCCCCTTCTGCTGCCCTCCTCTGGGCTCCAGGAAGGAGAGCAGATGAAATCTCAGGCCTGTGGCTTCTCCACACCACTGCCCCCCAGGTTGGAGGGGAGCTAAGAGATGAGAGAAGGGGACAGAGGCAAGAAAAGATGTTGATCAAGAAAGATGAGAACCAGGGGTGAGGGCTGAAGGAGAATCAAAGATAAAATACCAGT|TTAAAAAAAAAAAAAAAAAGGACTGAGCACAGTGGCTCACGCCTG	1	0.686181532715532	0.612610548302747	0.693969709788871	N	Y	3.31808381371038	2.96366169944203	2.96366169944203	splitr	24	0.422222222222222	0.422222222222222	0	N	0.511111111111111	N	N	9938	696	ENSG00000179218	ENSG00000145012	-	+	19	3	13055304	188608460	utr3p	intron	CALR	LPP	13049414	187871072	+	+	0.422222222222222	13054924	187970880	-	+	Y	1.18487489146117	0.333402269563772	N	SKBR3_13_2_1	20	0.962264150943396	7.2	1	4	1	N	N	0	0.962264150943396	5	1.25823087046328	0.438725237727329	1.25823087046328	0.438725237727329	3	57.2	1.2	0.60524179975777
139947	AGGCGCTCTTCACGGCGCTTGCGTGCTTCCTTGGTCTTAGACCTGCGGGCCTCAGCCTGGTCAGCCAGGAGCTTCTTGCGGGCCTTGTCTGCCTTCAGCTTGTGGATGTGTTCCATGAGAATCCGCTTGTTTTTGAACACATTCCCCTTCACCTTCAGGTACAGGCTGTGATACATGTGGCGATCGATCTTCTTAGATTCACGGTATCTTCTGAGCAGCCGGCGCAAAATCCTCATTCT|CCGCCGCCCCCGCGCCCGCTCGCTCCCTCCCGTCCGCCCGTCCGCGGCCCGTCCGTCCGTCCGTCCGTCGTCCTCCTCGCTTGCGGGGCGCCGGGCCCGTCCTCGCGAGGCCCCCCGGCCGGCCGTCCGGCCGCGTCGGGGCCTCGCCGCGCTCTACCTACCTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATAC	1	3.75426719278814e-10	0.311204357582937	0.306030290211129	N	N	3.73656073943594	2.17828849333143	2.17828849333143	splitr	2	1.11022302462516e-16	0	0	N	0	N	N	129759	0	ENSG00000108298	ENSG00000212932	-	-	17	21	37360980	48111157	coding	upstream	RPL19	RPL23AP4	37356536	48110676	+	+	1.11022302462516e-16	37359298	9826843	-	-	Y	-	-	N	SKBR3_13_2_1	24	1	12.5	1	1	2	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
128701	AAGTAAACTAGCCGGGCACAGTGGCGTGCGCCTGTAGTCCCAGCTACTCGGGAGGCTG|AGGTGGGAGGATCTGTTGAGCTCACGAGTTTGGGCTGTAGTCCACTATGGCAATTAGGTGTCTGCACTCAGTTCAGCATTAATACGGTACCCCTTGGAGTGGGGGACCACCAGTTGCTTAAGGAGGGGTGAACTGGCCCAGGTCAGAAAGGGAATAGGGCAAAACTCCCATGCTGATCAGTAGTGGGATCCCGCCTGTGAATAGCCACTGCACTCCAGTCTGGGCAACATGGCG	1	0.466787698905324	0.467532148991838	0.526369772984128	N	Y	3.44719145177281	3.39231567764112	3.39231567764112	splitr	69	0	0	0.5	N	0	N	N	164	0	ENSG00000177602	ENSG00000241226	+	-	17	19	3630067	46155061	intron	intron	GSG2	AC006132.1	3627211	46154768	+	+	0.706896551724138	3629888	46154816	+	-	Y	-	1	N	SKBR3_13_2_1	66	1	43.5	21	2	1	N	N	1	1	2	0.471836576423731	0.504947915120133	0.504947915120133	0.471836576423731	1	-	0	0.60524179975777
114893	TATCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC|TCTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTATCTATTGTATCCGAGAGTTCAACCTCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATTTTGGTGGCGGCTCCACTGCAGATGGC	1	0.201908889607679	0.526775457519482	0.600084425908804	N	N	3.53399318738748	3.33697589519302	3.33697589519302	splitr	1	2.22044604925031e-16	0	1	N	0.0357142857142857	N	N	0	0	ENSG00000218208	ENSG00000231767	-	+	6	1	113903149	192685783	intron	intron	RP11-367G18.2	RP11-92K2.2	113902703	192685313	+	+	2.22044604925031e-16	113902795	192685559	-	+	Y	1	1	N	SKBR3_13_2_1	6	0	4.5	3	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	0	0	0.60524179975777
70242	AGACCCTTTCAAGCAGTAAGCTGCATGCTTGCTTGTTGTGGTCATTAAAAAC|CCTAGTTTAGGATAACAGGTCTGCCTGTTTGAAGATGAAAAATAATACCCATTTAAAATTTGCCCTACTCAATTTCCTTCTCAGTCACATTTTAACTTTTAAACAGCTAATCACTCCCATCTACAGATTAAGGTGTATATGCCACCAAAACCTTTTGCCACCTTAAAAATTTCCTTCAAAGTTTAAACTAACCTGCATTTCTTCAATCATGAATTCTGAGTCCTGAAATTAAGGGACAATACACAGTAAGACAACTTGCATACAATTAGGAGTAATCCAAAATCTCCAAACATTATAGAAT	6	0.710044757145864	0.832679013698127	0.335652429231378	N	Y	3.38912318237562	3.57063922744582	3.38912318237562	splitr	75	0.923076923076923	0	0.714285714285714	N	1	N	N	1271	0	ENSG00000112159	ENSG00000234741	-	-	6	1	90529442	173838020	intron	intron	MDN1	GAS5	90352218	173833038	-	-	0.923076923076923	90431299	173833621	-	-	Y	1.04564537817288	1	N	SKBR3_13_2_1	3	0.0240963855421687	2.57142857142857	1	6	1	N	N	0.0240963855421687	0	7	0.687060277950346	1.481732406664	1.481732406664	0.687060277950346	1	1.71428571428571	0	0.60524179975777
141175	CATGTTCCTGCTACCACCAAAGTTTCCACTCTTCATTGGACCGTAGTTAGAAGGTTGCTGGTTATAATTTCCAAAATCATTGTAATTTCCACTTCCATAATTTCCTCCTCCATAGTTGTCATAACCACCTCCGTAGCCCCCACCCTGGTTGCCATATCCAGGTCCTCCACCACCATATCCTCCTCTTCCTCCTCCATAACCGGGGCTACCTCCAAAATTGCCACCTCCAGGTCCTCCTCCATACCCATT|ATAGCCTCATCATCCCCACCATCATAGCCATCATCACCCTCCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACACTACTCCCTATATCTAACAACGTAAAAATAAAATGACAGTTTGAACACACAAAACCCACCCCATTCCTCCCCACACTCATCGCCCTTA	1	3.52544076988567e-06	1	0.935920242646516	N	N	3.3227106063299	2.84330378550887	2.84330378550887	splitr	18	0.0734463276836158	0.0734463276836158	0	N	0.225988700564972	N	N	13407	0	ENSG00000122566	ENSG00000225630	-	-	7	1	26241149	566063	coding	intron	HNRNPA2B1	RP5-857K21.8	26229547	565020	-	+	0	26235491	565840	+	-	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	3	1	N	N	0	0	3	0.844339136758256	1.00989583024027	1.00989583024027	0.844339136758256	2	-	0	0.60524179975777
67770	GAGTCAGCCTTGAAGGACCTCAAGATCAAATGACCTGTGAGGAATATGTTGCCTTCATCCTAGCTGCTGGGGAAGCGGGGAGAGGGGTCAGGGAGGCTAATGGTTGCTTTGCTGAATGTTTCTGGGGTACCAATACGAGTTCCCATAGGGGCTGCTCCCTCAAAAAGGGAGGGGACAGATGGGGAGCTTTTCTTACCTATTCAAGGAATACGTGCCTTTTTCTTAAATGCTTTCATTTATTG|AAAAAAAAAAAAAAATGCCAGGCGCGGTGGCTCATGCCTGTAAT	5	1	0.136003307144343	0.296464999894846	N	Y	3.41472693405989	2.95171432237406	2.95171432237406	splitr	27	0.409090909090909	0.409090909090909	1	N	0.431818181818182	N	N	4004	391	ENSG00000130429	ENSG00000072609	+	-	7	12	98992424	133485772	utr3p	intron	ARPC1B	CHFR	98971872	133416937	+	-	0.409090909090909	98992321	133439797	+	-	Y	0.728552119085786	1.26806267274459	N	SKBR3_13_2_1	9	0.62	5.5	2	4	1	N	N	0	0.62	4	1.09267417698127	0.413891733705027	1.09267417698127	0.413891733705027	1	81	5.75	0.60524179975777
136481	TCCTCAAGGCCACATACATCCTGCTTCACTGCTGCTTGCACTCTGCTGGGTTTTGATCCTTCTTTGGGTCATAGTCTGGATCATTTTCCTCATCT|GCTTCCTAGTCCTGTACGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATT	3	0.695361570913106	0.276539608448645	0.5	N	N	3.13590542123087	3.38912318237562	3.13590542123087	splitr	21	0.157894736842105	0.126315789473684	0	N	0.189473684210526	N	N	4449	3	ENSG00000187109	ENSG00000230021	-	-	12	1	76478738	659930	coding	intron	NAP1L1	RP5-857K21.4	76438682	536816	-	-	0.157894736842105	76443013	568240	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	6	0	6	6	2	1	N	N	0	0	2	0.637393269905742	0.827783467410055	0.827783467410055	0.637393269905742	1	-	0	0.60524179975777
141116	CTACCTGTCGGTGAAGGTGTGGGACCTCAACATGGAGAGCAGGCCGGTGGAGACCCACCAGGTCCACGAGTACCTGCGCAGCAAGCTCTGCTCTCTCTATGAGAACGACTGCATCTTTGACAAGTTTGAGTGTTGCTGGAACGGTTCGGATAG|ATGTGAGCCCTCTGGCCAACCTACCTAACCCACCTGCCCCCAGTGGCATTCCGGTCTTTCCAGTCTGTCCAACACACGGCAGCCACAGAACACTGTCTGCACGCCAGGACTAGAGCCCTCCTCCCCGCTGAGAGGCTG	1	1	0.447538936456759	0.5	Y	Y	3.60103760561896	3.27974235647284	3.27974235647284	splitr	291	1	0	0	Y	0.644927536231884	N	N	370	622	ENSG00000175470	ENSG00000176171	+	-	10	10	133773331	133795435	coding	intron	PPP2R2D	BNIP3	133747955	133781578	+	-	0	133761295	133783131	+	-	N	1.78955216572527	1.09364696826945	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	2	0.827783467410055	0.521503584468335	0.827783467410055	0.521503584468335	4	19.5	65	0.60524179975777
134028	GCTGACGGGAGTTGGCATTGGCGATTTCATTGGTCTCATTGGGGTCTAACCAGACCTTCTTCTTGCCACAGCGGAGGACACTAGAGGCGAGCCTCTTCTGAAGCCTGAGCATACTCATGGCTGCGGCCGCAGCAGCGAAAGGAAAGAGCTCGCTCGGGCCCGGCTCCTCCCA|CTTATTCTACACCTCTCATGTCTCTTCACCATGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCACCATTTACCTGTGCTTCATTGAATTTCTTCAATTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACACCCGC	1	5.5099205127382e-07	0.261533274614987	0.233421673643755	N	N	3.0212659605228	3.41269548964026	3.0212659605228	splitr	12	0.0406976744186048	0	0	N	0.00581395348837188	N	N	129759	0	ENSG00000108298	ENSG00000137571	-	-	17	8	37360980	70747299	utr5p	intron	RPL19	SLCO5A1	37356536	70584568	+	-	0.0406976744186048	37356544	70602311	-	-	Y	-	1	N	SKBR3_13_2_1	45	1	27	9	2	1	N	N	0	1	2	0.678782443276245	0.827783467410055	0.827783467410055	0.678782443276245	1	-	0	0.60524179975777
141129	TTTATTGACATACAGGTAGGCTCTATAGCAACAGGCCTGGAGGTGCTGCAGTAGTGGGGGAAAATGGAAGGTGGAGGGTGGAGTGTTTGCTGCAGGACAGCTGAGTGGAGGGTGGGGACAGGTGCAAACTGGAGAGGCCTAGAGAGCTAGAGAAGCAAGTAAGGGCCAGGGC|GAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAATGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTGGTAGTTCTGACCATAAACGATGCCGAC	1	1	0.311204357582937	0.306030290211129	N	N	2.923645918911	3.22167408707565	2.923645918911	splitr	7	0	0	0	N	0.0400000000000001	N	N	21606	1	ENSG00000067225	ENSG00000256642	-	-	15	16	72524163	33962503	utr3p	upstream	PKM2	NCRNA00273	72491370	33961052	-	-	0	72491557	33963491	+	-	Y	-	-	N	SKBR3_13_2_1	12	1	8	4	2	1	N	N	0	1	2	0.778116459365451	0.496670080446033	0.778116459365451	0.496670080446033	1	-	-	0.60524179975777
73940	TGTGCTCACACGATAAACCCTAGGAAGCCAATTGATATCATAGCTCAGACCATACCTATGTATCCAAATGGTTCTTTTTTTCCCGGAGTAGTAAGTTACAATATGGGAGATTATTCCGAAGCCTGGTAGGATGAGAATATAAACTTCAGGGTGACCGAAAAATCAGAATAGGTGTT|GGTTGATATAGACAGCAGGACGGTGGCCATGGAAGTCAGAATCCACTAAGGAGT	5	0.667950595747351	0.713331449201006	0.716947866153821	N	N	3.53768019619294	3.66761801553402	3.53768019619294	splitr	17	0.0555555555555552	0.0185185185185185	0	N	0.185185185185185	N	N	0	0	ENSG00000237973	ENSG00000252666	-	-	1	19	567996	36066721	intron	upstream	RP5-857K21.6	AD000090.1	566454	36066627	+	+	0.0555555555555552	567148	36066533	-	-	Y	1	-	N	SKBR3_13_2_1	4	1	3.5	3	2	1	N	N	0	1	2	0.827783467410055	0.504947915120133	0.827783467410055	0.504947915120133	2	0	-	0.60524179975777
100604	CAACAAGAGCGAAACTCAGTCTCAAAAAAAAAAAAAAAAAAAAA|AACCCAAAAAAACTCAAGAATGTAATGAATGATACCCAATGTGCCTTTTCTAGAAAAAGTTGCCAAATATATCTCTTGGATCTGCTGAGCATGTCCTCTGATACATAAGGCAAGCATGTTTCTACACCCAGTGTTGATGCCAGTTAGTTTTCAGAATCCAAACTGATGGCAGCTACTGGTCCTTGGGACTGACATCCTCTGGGAATATAACCTGCAA	1	1	0.899266171301115	0.897571427984624	N	N	2.2938958234657	2.98833743449346	2.2938958234657	splitr	29	0.340909090909091	0	0	N	0.522727272727273	N	N	3380	0	ENSG00000196914	ENSG00000175061	+	+	11	17	120360645	16367300	intron	intron	ARHGEF12	NCRNA00188	120207787	16342289	+	+	0.340909090909091	120334255	16344892	+	+	Y	-	1	N	SKBR3_13_2_1	15	0.576271186440678	11.5	8	2	1	N	N	0.576271186440678	0	2	0.488392245771932	0.471836576423731	0.488392245771932	0.471836576423731	2	-	0	0.60524179975777
110374	GATTCTACCCTAGCATCACACACCGCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACCTCCATCATCACCTCAACCCAAA|TACTCCACCTCAATCACACTACTCCCCATATCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAACCCACCCCATTCCTCCCCACACTCATCGCCCTTACCA	4	0.16133042230223	0.170466845794889	0.341773455113556	N	N	2.78104980386964	2.99884535653422	2.78104980386964	splitr	0	0	0	0	N	0.100917431192661	Y	N	54817	24767	ENSG00000198786	ENSG00000198763	+	-	MT	MT	14148	5511	coding	coding	MT-ND5	MT-ND2	12337	4470	+	+	0	14077	5361	+	-	N	-	0.984185675712648	N	SKBR3_13_2_1	4	0	2.85714285714286	2	7	3	N	N	0	0	7	1.4734545719899	1.24995303578918	1.4734545719899	1.24995303578918	2	-	862.142857142857	0.60524179975777
109891	GCCTGGCAGCCGGAAGCCTATTCGCAGGATTTCTCATTACTAACAACATTTCCCCCGCATCCCCCTTCCAAACAACAATCCCCCTCTACCTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTCTAACAGCCCTAGACCTCAACTACCTAACCAACAAACTTAAAATAAAATCCCCACTATGCACATTTTATTTCTCCAACATACTCGGATTCTACCCTAGCATCACACA|CCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATCACCACCCAACAATGACTAATCAAACTAACCTCAAAACAAATGA	1	0.0293788570062905	0.375556752806067	0.399915574091196	N	N	3.38656252929588	3.64809409186561	3.38656252929588	splitr	18	0.121428571428572	0.121428571428572	0	N	0.121428571428572	Y	N	54817	38194	ENSG00000198786	ENSG00000198899	+	-	MT	MT	14148	9207	coding	coding	MT-ND5	MT-ATP6	12337	8527	+	+	0.121428571428572	13937	8559	+	-	N	-	-	N	SKBR3_13_2_1	3	0	3	3	2	6	Y	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
141752	TGCGTCACTAATTAGATGACAAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGTGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATGGC|GTCAACATCCTGATTCGGCCTGATGGAGAGAAGAAGGCATATGTTCGACTGGCTCCTGATTACGATGCTTTGGATGTTGCCAACAAAATTGGGATCATCTAAACTGAGTCCAGCTGCCTAATTCTGAA	1	1	0.526775457519482	0.600084425908804	N	N	3.28445308747838	3.71401215437137	3.28445308747838	splitr	14	0.046875	0	0.5	N	0.1640625	N	N	356	0	ENSG00000149262	ENSG00000240567	-	+	11	3	77705724	161166030	intron	intron	INTS4	RP11-3P17.4	77589766	161144215	-	+	0.046875	77597502	161147016	-	+	Y	1.69881089015784	1	N	SKBR3_13_2_1	64	1	63.5	63	2	1	N	N	1	0	2	0.827783467410055	0.538059253816536	0.827783467410055	0.538059253816536	3	7.5	0	0.60524179975777
135704	TAAGAGTTTCCTTAACATTGTTATTTCGATAACCTGAAGCTGTTCTGTTACCTCTGGGCTCTCATCCTCTCCTATTTATACAGTGAAGCCTGTTTCAACAGAAGTAAAGAGTAAAAAAAAAATAGGTTATGAAATTATCCATCTAACCAGATTTTAAGGAAAGATAACATGATCCTAAAAAGCTTTTACTCCTGCAGCTATGTCTCCCAAGATAATAATAATTGTAAAACTCAAAAGCTACTTACCCATGGCAAATAGGAAGAAGCTCAGTATCGGCTCCTCCCACCATAACCCCCACTTCCTCCACTGCCT|TCAGCCGCACCAGCTCCTCCAGGGCCGTGGTTGTGAAGAAGATCGAGACACGTGATGGGAAGCTGGTGTCTGAGTCCTCTGACGTCCTGCCCAAGTGAACAGCTGCGGCAGCCCCTCCCAGCCTACCCCTCCTGCGCTGCCCCAGAGCCTGGGAAGGAGGCCGCTATGCAGGGTAGCACTGGGAACAGGAGACCCACCTGAGGCTCAGCCCTAGCCCTCAGCCCACCTGGGGAGTTTACTACCTGGGGACCCCCCTTGCCCATGCCTCCAGCTACAAAACAATTCAATTGCTTTTTTTTTTTGGTCCAAAATAAAACCTCAGCTAGCTCTGCCAATGTCCTTGCTTGT	1	1.67093685964621e-21	0.321839855309698	0.321669634186996	N	N	3.10654011282762	3.61464054707278	3.10654011282762	splitr	3	0.00961538461538458	0	0	N	0	N	N	13407	64916	ENSG00000122566	ENSG00000170421	+	+	7	12	26241149	53298868	coding	coding	HNRNPA2B1	KRT8	26229547	53290971	-	-	0.00961538461538458	26232181	53291309	+	+	Y	0.522430668698816	0.942910254062659	N	SKBR3_13_2_1	3	0	3	3	2	1	N	N	0	0	2	0.463558741749631	0.504947915120133	0.504947915120133	0.463558741749631	1	878.5	2903.5	0.60524179975777
107042	GACGTTGACAATCGAGTAGTACTCCCGATTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTGCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG|CACAGCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAAACCCTCATTCACACGAGAAAACACCCTCATGTTCATACACCTATCCCCCATT	1	0.0051492603687965	0.526775457519482	0.600084425908804	N	Y	3.13007772497211	3.0218486023454	3.0218486023454	splitr	403	1	1.11022302462516e-16	0	Y	0.149606299212598	N	N	58402	93473	ENSG00000198712	ENSG00000198886	+	-	MT	MT	8269	12137	utr3p	coding	MT-CO2	MT-ND4	7586	10760	+	+	0.0236220472440944	8269	11965	+	-	N	-	-	N	SKBR3_13_2_1	6	0	4.5	3	2	2	N	N	0	0	2	0.670504608602144	0.827783467410055	0.827783467410055	0.670504608602144	1	-	-	0.60524179975777
140390	CAGTCTTTGGGTTTTTGGGTTCCGAGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACAGAAGGGCACCACCAGGAGTGGAGCCTGCAGCTTAATTTGACTCAACATGGGAAAACTCACCCAGCCTGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCC|GATGGGGTGGTGGTTGTGGTAAATTTTAATAGTGTGGGAAGTTGAATAATTTATGAAGGAGAAGGGTCAGGGCTGATTCGGGAGGATCCTATTGGTGCGGGGGCTTTGTATGATTATGGGCGTTGATTAGTAGTAGTTACTGGTTGAACATTGTTTGTTGGTGTGTATATTGTACTAGAGATTGCTCGGGGGAATAGATTATGTGATTAGGAGTAGGGTTAGGATGAGTGGGAAG	1	0.00137879125969171	0.375556752806067	0.399915574091196	N	N	3.56591914887046	2.79889189072799	2.79889189072799	splitr	14	0	0	0	N	0	N	N	1	0	ENSG00000163046	ENSG00000249119	-	-	2	5	133015542	134260334	intron	intron	ANKRD30BL	MTND6P4	132905164	134259813	-	+	0	133012460	134260140	-	-	Y	0.81549815498155	1	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	1	0	2	0.44700307240143	0.827783467410055	0.827783467410055	0.44700307240143	2	0	0	0.60524179975777
30140	CTTCATTTCCTCTACCTCCCACTTTCCATCATATTTGGCAATTTCATCATCGGTATCGTCTTTCTTGGCTTTGGATAAAATCCACCCTGACAGAGTTCCTCTGTCAAAAGAATCAGCAAAATATACTTCCCCTGTTGGAACTG|CTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCTATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATG	1	0.0051492603687965	0.311204357582937	0.306030290211129	N	N	3.56385300933068	3.22593015733458	3.22593015733458	splitr	0	2.22044604925031e-16	0	0	N	0.027972027972028	N	N	16908	3	ENSG00000127022	ENSG00000230021	-	-	5	1	179157926	659930	coding	intron	CANX	RP5-857K21.4	179105629	536816	+	-	2.22044604925031e-16	179133275	569325	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	3	0.0566037735849057	2.5	2	2	1	N	N	0.0566037735849057	0	2	0.827783467410055	0.620837600557541	0.827783467410055	0.620837600557541	2	-	0	0.60524179975777
9932	TGTCCCTGTCTGACCCAGGCCTGGGGTACCACCCCACGTGCTGGACCCTACGCTGGCCACCCCTGTGCTCCCTCCCTGCCCTCTTGCTCTTTCTGCCTGGAACGGGCCCATAACCCCCCAGCCTTGCGCAGTCTCGGCTCCCCCCGAGAAGATGTCACCTTTGCTAACTCTCCTGCCCCCATCCTGCCCCTCTGCTGGGAGGGTG|TCTGCTTCCTAGTCCTGTACGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTT	1	2.7016042505806e-14	0.899266171301115	0.897571427984624	N	N	3.03020225656374	3.35356364524965	3.03020225656374	splitr	8	0	0	0	N	0.0439024390243903	N	N	83603	3	ENSG00000130600	ENSG00000230021	-	-	11	1	2022700	659930	intron	intron	H19	RP5-857K21.4	2016406	536816	-	-	0	2018541	568237	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	4	7	N	N	0	0	4	0.960228822195664	0.736727285994949	0.960228822195664	0.736727285994949	0	-	0	0.60524179975777
48888	ATATGTTGTGTAGAAAAATTAACTCTCGGCTTAAAATAACATTCAAAAGGCACTTCATCCTGTAGGAAAGAGATTCTGAGTTGGGTCAGCTGCTCTGAGCTGGGATAGAAGGGGACAGGTGGTCTGCTTGGAGGGGAGGACAGTTGAAAGGAAGTCTGATA|AAAATCAAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTAACATTAACAAGCCCT	1	0.613719197459347	1	0.935920242646516	N	Y	3.41848849077886	1.94947023424928	1.94947023424928	splitr	34	0.603773584905661	0.603773584905661	0.5	N	0.622641509433962	N	N	928	0	ENSG00000144677	ENSG00000213147	-	-	3	10	38025960	135516024	utr3p	upstream	CTDSPL	XXyac-YRM2136_A.1	37903451	135515571	+	+	0.603773584905661	38022648	55085580	-	-	Y	0.475523392176369	-	N	SKBR3_13_2_1	44	0.385964912280702	28.5	13	2	1	N	N	0	0.385964912280702	2	0.827783467410055	0.471836576423731	0.827783467410055	0.471836576423731	3	15.5	-	0.60524179975777
27113	AGCACTATAGTCACCTCAAGGTTCAAGAGCAGGAGGTCCACTTCCAGGCTCACTCACAAGGGTGTTGGCAGGTCTCAGGTTCCCAGATGCTGTTGGCTAAAGACATTGGATCCTGCCATGCAGGCCTCTCTGGAGGCTTACTTATCACATGGCACCTTGCTTCCACCACACCAAGGGCA|CTGCGCAGGTAACCCGGGCCCCCGCGCGCAAGGCCGAGGCGCAGGCGGAGCGGGCTGGAGCATGTCCGGCCCTTTGTTCTGCGCTCGTGCGTGTGTCCGGGTACTTGAGCTCCCTAGCGGTCCGCCTGTCCGTCT	1	0.599572149176471	0.163783040919641	0.102428735043176	Y	Y	3.36079094374226	3.09549782445355	3.09549782445355	splitr	314	1	0	0	Y	1	N	N	4	5982	ENSG00000166143	ENSG00000166145	+	-	15	15	41120907	41150405	upstream	utr5p	PPP1R14D	SPINT1	41107643	41136241	-	+	0	41128480	41136377	+	-	N	-	0.412365672765724	N	SKBR3_13_2_1	1	1	1	1	0	1	N	Y	1	0	3	0.852616971432356	0.637393269905742	0.852616971432356	0.637393269905742	4	-	71	0.60524179975777
116695	CACCCTTACTCTGCCACTAATTTATTTCCTTGTTGCTGAAATGATGAGAGAGGTATAATCTCCACCCTCACGGAGTTGTCATCACC|CTGGCAACCCCTCCGTAGTCAAGGCCTTCTTCTCCATGAAATTTTATCATTAATCGCTTCCAGAGATCTTTTGGTCTCATTTTCATGACCTGTCAATATGATT	8	0.422970305762913	0.846408467271751	0.878547478010405	N	Y	3.67849247003875	3.70529712536226	3.67849247003875	splitr	189	0.988372093023256	0	0	N	1	N	N	145	0	ENSG00000176681	ENSG00000237854	+	+	17	17	44415160	66111659	intron	intron	LRRC37A	AC005332.1	44370099	66097708	+	+	0	44410421	66110666	+	+	N	0.57813070300325	1	Y	SKBR3_13_2_1	20	0	12.5	4	14	1	N	N	0	0	14	0.918839648825161	0.894006144802859	0.918839648825161	0.894006144802859	4	0.428571428571429	0	0.60524179975777
132449	TCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCC|CCACCCTACCACACATTCGAAGAACCCGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGCTGGTTTCA	1	0.450933640028331	0.899266171301115	0.897571427984624	N	N	3.08718402302856	3.26038626667377	3.08718402302856	splitr	11	0.0714285714285714	0.0714285714285714	0	N	0.0714285714285714	N	N	83603	0	ENSG00000130600	ENSG00000237973	-	-	11	1	2022700	567996	intron	intron	H19	RP5-857K21.6	2016406	566454	-	+	0.0714285714285714	2018911	567952	+	-	Y	-	1	N	SKBR3_13_2_1	3	0.301587301587302	3	3	2	2	N	N	0	0.301587301587302	2	0.422169568379128	0.521503584468335	0.521503584468335	0.422169568379128	1	-	0	0.60524179975777
109468	CCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAACAGAGCAGGTCAAAACTCCCGTGCTGATCAG|TAGTGGGATCACGCCTGTGAATAGCCCCTGCACTCCAGCCTGAGCAACATAGCAAGATCCCGTCTCTTAAA	3	1	0.267364327965308	0.176674157397045	N	Y	3.51935717616377	3.63296356710195	3.51935717616377	splitr	183	0.873239436619718	0	0	N	0.929577464788732	N	N	593	8	ENSG00000206560	ENSG00000151320	+	-	3	14	15901278	33300567	intron	intron	ANKRD28	AKAP6	15708743	32798523	-	+	0.887323943661972	15780253	32911779	+	-	Y	2.65813318867834	1.12556276979103	N	SKBR3_13_2_1	110	1	52.3333333333333	7	3	1	N	N	1	1	3	1.06784067295897	0.513225749794234	1.06784067295897	0.513225749794234	3	7.33333333333333	0	0.60524179975777
136122	TCTTTATTTCGCCCCCACCCCCATCCCCTGCCTTTTTTTTTTTTTTTTT|CCCTAAAGACTGTAGCAGGATAAAAGGATCACTGGCTCCGAGTCTCTTTGAGATAACAAGTGATGAAATAAAAAAGAAAGCCCATACCCTCAAATAAGGTCAGGTAACCCCATTGCCCACCCTCCCTACAAGGTAAAAAATGAGTACTTTTAGTAACAGTTCAGAATTCATCTTTAT	1	1	0.899266171301115	0.897571427984624	N	N	2.25048649323116	3.62192127872787	2.25048649323116	splitr	25	0.469387755102041	0.469387755102041	0	N	0.489795918367347	N	N	1070	4421	ENSG00000079691	ENSG00000069275	+	-	6	1	25620758	205719404	utr3p	utr3p	LRRC16A	NUCKS1	25279306	205681947	+	-	0.469387755102041	25619978	205686644	+	-	Y	-	0.461214840176574	N	SKBR3_13_2_1	21	0.528301886792453	15.5	10	2	1	N	N	0.528301886792453	0	2	0.438725237727329	0.645671104579843	0.645671104579843	0.438725237727329	2	-	29	0.60524179975777
118937	TCGCAACCACCCAAATATCACTTTCTTTGTTTATGTCAGTAATTTCACCTGGCCCATCAAAATTCAGGTGCAAACTGAACAATGAGGACGCATGGACACAGGAAGGGGAACATCACACACCAGGGCCTGTTGTGGGGTGGGGGGAAGGGGAAGGGATAGCATTAGGGGATATACCTAATGT|TAAATGACGAGTTAATGGGTGCAGCACACCAACATGGCACATGTATACATATGTAACAAACCTGCACGTTGTGCACATGTACC	2	1	0.935695919090345	0.209300629116717	N	Y	3.21808036422602	3.49168728493972	3.21808036422602	splitr	264	0.975903614457831	0.0843373493975905	0	N	0.975903614457831	N	N	1969	62	ENSG00000088812	ENSG00000130150	+	-	20	X	3631769	14940449	utr3p	intron	ATRN	MOSPD2	3451687	14891563	+	+	0.204819277108434	3596588	14933573	+	-	Y	-	-	N	SKBR3_13_2_1	20	1	13.4	7	5	1	N	N	0.373831775700935	1	5	0.885728310128759	0.811227798061854	0.885728310128759	0.811227798061854	1	-	-	0.60524179975777
137213	GTCAGGAGTTTGCTCCTTCTGATGTTCGGATGTGTTTGGAGTTTCTTCCTTCTGGTGGGTTCGTGGTCTGGCTGGCTCAGGAGTGAAGCTGCAGACCTTCGCGGTGAGTGTTACAGCTCTTAAGGCTGCGCGTCTGGAGTTGTTTGTTCCTCCTGGTGGGTTCGTGGTCTCGCTGGCTTCAGGAGTGAAGCTGCAGACATTCCCAGTGAGTGTTAC|CGCTCACTCTTTGGGTCCACACTGCTTTTATGAGCTGTAACACTCACTGTGAAGGTCTGCAGCTTTACTCCTGAAGCCAGCGAGACCACGAGCCCACTGGGAGGAACGAACAATTCCAGACGCACTGCCTTAAGAGCTGTAACACTCACCGCAAAGGTCTGCAGCTTCACTCCTGAGCCAGGGAGTCCACGAACCCACCAGAAGGAAGAAACTCCAAACACATCCGAACATCAGAAGGAACAAACTCCAGACGTGCCACCTTAAGGGCTGTAACACT	1	4.41647432480957e-08	0.12875022366714	0.0640797573534845	N	Y	3.60463132846859	3.56385300933068	3.56385300933068	splitr	493	0.810185185185185	0	0.5	Y	0.0138888888888888	N	N	60	0	ENSG00000154451	ENSG00000233084	-	-	1	1	89738544	249231242	utr5p	upstream	GBP5	AL672183.2	89724633	249230780	-	+	0.384259259259259	89738443	154651445	+	-	N	-	-	N	SKBR3_13_2_1	546	1	501	456	2	1	N	N	1	1	2	0.513225749794234	0.827783467410055	0.827783467410055	0.513225749794234	3	-	-	0.60524179975777
140695	CTGGGCAACAAGAGCAAAACTCCATCTCAAAAAAAAAAAAAAAAAA|CTTAAGATGGACACAGCTGACTGGACCCCCATCCTGCCTCACCCATGGGTGCTGCACCCCAGACCCATCCTGCCACTTCTATGTCTCTGGACCACAGGATGGTGGTGGCATTGCAGGTTGGCAAGTGGGCTGATGGGGTCCGCCCTCCTCACTGCTGAGCTCCTCACCTGGACAGTCTCCTGGACAAGGAGTTTCCAGCTGCTGGCTGGAGTCTCAGGCCAAATTGCAGAGGGTCCTCCAGGGTCC	1	0.488727664617922	0.800133926999915	0.844771979185218	N	Y	2.35131955712487	3.51782959285392	2.35131955712487	splitr	292	0	0.58695652173913	0.5	N	0.847826086956522	N	N	1541	1253	ENSG00000110696	ENSG00000141696	+	-	11	17	16778649	39968855	intron	utr3p	C11orf58	LEPREL4	16634679	39958199	+	-	0	16778473	39958529	+	+	Y	-	-	N	SKBR3_13_2_1	33	0.46	21.5	10	2	1	N	N	0.46	0	2	0.413891733705027	0.546337088490636	0.546337088490636	0.413891733705027	2	-	-	0.60524179975777
117292	AACGATCAGAGTAGTGGTATTTCACCGGCGGCCCGCAGGGCCGGCAGACCCCGCCCTGGACCCCTCGCGGGGACACCGGGGGGCGCCGGGGGCCTCCCACTTATTCTACACCTCTCACGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGT|GGGAACGGGCTTGGTGGAATCCGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGCCATGAGAAGTGTAGAATAAGTGGGAGGCCCC	57	0.0223415570479802	0.420184240837189	0.82484596050187	N	N	3.47552369040616	3.27767621693306	3.27767621693306	splitr	5	0	0	0	N	0	N	N	0	0	ENSG00000226958	ENSG00000198626	-	-	X	1	108297792	238129359	intron	intron	RN28S1	RYR2	108297361	237205505	-	+	0.0471698113207546	108297528	237766524	-	-	Y	1	1	N	SKBR3_13_2_1	3	1	2.5	2	2	1	N	N	1	1	2	0.463558741749631	0.430447403053228	0.463558741749631	0.430447403053228	2	0	0	0.60524179975777
83370	GGGATGCAGAGGTTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGAGAGCAAAGAGAGAGAGGAGCAA|GACATGATGAAATCAGAAAAAAATATGGCCTGTTTAAAGAAGAAAACCCGTATGCTAGATTTGAAAACAACTAAAGCGCTCCAGCACATCAGTCCCGACGCTTCCTGTGAGGT	1	0.107524185526562	0.269262891586344	0.244611167082359	N	N	2.35885536411507	3.22023978972163	2.35885536411507	splitr	3	0.0337078651685392	0.0337078651685392	0	N	0.123595505617977	N	N	2107	3344	ENSG00000159335	ENSG00000183255	-	-	12	21	6880118	46293752	utr3p	coding	PTMS	PTTG1IP	6874682	46269500	+	-	0	6879850	46275151	-	+	Y	-	-	N	SKBR3_13_2_1	2	0	1.5	1	1	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
139903	GCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCGTACTGAAAATC|AAGATGAAGCGCCTGAGAAAGAAGTTTGCCCAAAAGATGCTTCGAAAGGCAAGGAGGAAGCTTATCTATGAAAAAGCAAAGCACTATCACAAGGAATATAGGCAGATGTACAGGACTGAAATTCGAATGGCGAGGATGGCAAGAAAAGCTGGCAACTTCTATGTACCTGCAGAA	1	1	0.311204357582937	0.306030290211129	N	N	3.72448538129198	3.03742955505636	3.03742955505636	splitr	11	0	0	0	N	0.0258620689655172	N	N	0	107	ENSG00000162669	ENSG00000182578	+	-	1	5	91870426	149492935	intron	intron	HFM1	CSF1R	91726323	149432854	-	-	0	91853014	149473949	+	-	Y	1	0.525371610097155	N	SKBR3_13_2_1	34	1	27.5	21	2	1	N	N	1	0	2	0.471836576423731	0.827783467410055	0.827783467410055	0.471836576423731	1	0	5	0.60524179975777
139900	GCTGAGTTTGCTGAGAGATCGGTAGCCAAGCTGGAAAAGACAATTGATGACCTGGAAGATAAACTGAAATGCACCAAAGAGGAGCACCTCTGTACACAAAGGATGCTGGACCAGACCCTGCTTGACCTGAATGAGATGTAGAACGCCCCAGTCCCACCCTGCTGCTGCTCCTCCCTCTGACCCAGACTCCGCCTGAGGCCAGCCTGCGGGAAGCTGACCTTTAACTGAGGGCTGATCTTTAACTGGAAGGCTGCTTTCTCCTTT|CACCACCCCCATCTCAGAACAGAAGGGTGGGAAGCCAGAGCCGCCTGCCATGCCCCAGCCAGTCCCC	1	1	0.165454462421282	0.104411461690874	N	N	3.21063179870157	3.19127570890251	3.19127570890251	splitr	10	0.149253731343284	0.149253731343284	0	N	0.149253731343284	N	N	5925	19201	ENSG00000143549	ENSG00000149273	+	-	1	11	154167124	75133324	utr3p	coding	TPM3	RPS3	154127784	75110530	-	+	0.0298507462686565	154129992	75115834	-	-	Y	-	-	N	SKBR3_13_2_1	6	0	4	2	2	1	Y	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
70810	CTACACAATTCTCCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTGCCCTATTACTATCCATCCTCATCCTAGCAATAATCCCC|ACCTCCAAATATCTCATCAACAACCGACTAATCACCACCCAACAATGACTAATCAAACTAACCTCAAAACAAATGATAACCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGT	1	0.464046737792632	1	0.935920242646516	N	N	3.1940041958516	3.04015804200544	3.04015804200544	splitr	30	0.0705882352941176	0.0705882352941176	0	N	0.164705882352941	Y	N	37049	38194	ENSG00000198727	ENSG00000198899	+	-	MT	MT	15887	9207	coding	coding	MT-CYB	MT-ATP6	14747	8527	+	+	0.0705882352941176	15661	8623	+	-	N	-	-	N	SKBR3_13_2_1	3	0	3	3	2	3	Y	N	0	0	2	0.819505632735954	0.827783467410055	0.827783467410055	0.819505632735954	3	-	-	0.60524179975777
115248	ATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCTGCACAGCCACTTTCCACACAGACATCA|CAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCGCCCTCCCATCCCTACGCATCCTTTACATAA	3	1	0.250730182331237	0.451731126833041	N	Y	3.39593990571429	3.27824527838653	3.27824527838653	splitr	254	0	0	0	Y	0.0583333333333333	N	N	0	58402	ENSG00000210049	ENSG00000198712	+	-	MT	MT	647	8269	upstream	coding	J01415.2	MT-CO2	577	7586	+	+	0	281	7725	+	-	N	-	-	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.45528090707553	0.827783467410055	0.45528090707553	0	-	-	0.60524179975777
12542	TCTGGCGGCATCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGAG|GGTGTAAGTCTCACGCAGGGCCATACCCATGTCTGCAGCAGGTCTCCGAGATGAGCAGACTCTGGCATGTTGGAACAATGTAGGTAAAGGAAGTCCTCAAGCCGGATCCATAACTTCGGGATAAGTATTGGCTGTAAGGGCTGGGTCGGTTGGGC	116	0.1821313329084	0.174041207794408	0.655877003311758	N	Y	3.34512186274866	3.53296011761759	3.34512186274866	splitr	206	0	0	0.615384615384615	N	0.647058823529412	N	N	0	0	ENSG00000239935	ENSG00000252318	+	+	5	2	71146942	133038738	intron	downstream	AC116340.1	AC097532.1	71146740	133038647	+	-	0.882352941176471	71146930	133038275	+	+	Y	1	-	N	SKBR3_13_2_1	3	1	1.57692307692308	1	14	1	N	N	0.690140845070423	1	26	0.587726261861139	1.03472933426257	1.03472933426257	0.587726261861139	2	0	-	0.60524179975777
136916	TATTGTGGAGGGAATAGGGGATCTGGGGACAGGGTGGGACGTACCATGGGGACAGGAGGTCACAGAACACACACACACACACACACACAC|ACACACACACATACACACCCCTGAACACACACACAGACACACATACACCCATGATGTGAGCAAACACACACACGTGCGCCTTCATAGCCCAGCCAAGGGCATGCAGGCAGGGTGTGCTGCCTGAGATGGCACCTCCCTTTCAGCCATTCTTCAAGAATGGGCCACACACAGCTAGAAG	6	1	0.130008913338418	0.310270059984405	N	N	2.25679419778687	2.31118484735393	2.25679419778687	splitr	0	0.166666666666667	0.166666666666667	0	N	0.188888888888889	N	N	4909	1589	ENSG00000105281	ENSG00000175274	-	+	19	11	47291851	44972840	utr3p	utr3p	SLC1A5	TP53I11	47278140	44907454	-	-	0.166666666666667	47278333	44955885	+	+	Y	-	1.96369651230856	N	SKBR3_13_2_1	1	0.312169312169312	1	1	0	1	N	N	0.2	0.312169312169312	2	0.45528090707553	0.827783467410055	0.827783467410055	0.45528090707553	1	-	89	0.60524179975777
139646	GGAGGATGACTCGGATGTCTGGTGGGGCGGAGCAGACACAGACTATGCAGATGGGAGTGAAGACAAAGTAGTAGAAGTAGCAGAGGAGGAAGAAGTGGCTGAGGTGGAAGAAGAAGAAGCCGATGATGACGAGGACGATGAGGATG|ACGAAGATGATGAGGATGACGATGACGATGAGGAAGATGACTCTGAAGAAGAAGCTATGGAGACTACACCAGCCAAAGGAAAGAAAGCTGCAAAAGTTGTTCCTGTGAAAGCCAAGAACGTGGCTGAGGATGAAGATGAAGAAGAGGATGATGAGGACGAGGATGACGACGACGACGAAGATGATGAAGATGATGATGATGAAGATGATGAGGAGGAGGAAGAAGAGGAGGAGGAAGAGCCTGTCAAAGAAGCACCTGGAAAACGAAAGAA	2	0.0017239676144301	0.628320794780147	0.834131705711819	N	N	2.9447813851406	2.70501654325161	2.70501654325161	splitr	0	0.109589041095891	0.109589041095891	0	N	0.198630136986301	N	N	8411	7868	ENSG00000142192	ENSG00000115053	+	-	21	2	27543446	232348352	coding	coding	APP	NCL	27252861	232318242	-	-	0.109589041095891	27394270	232326289	-	+	Y	-	-	N	SKBR3_13_2_1	1	0.576354679802956	1	1	0	1	Y	N	0.576354679802956	0.380952380952381	2	0.827783467410055	0.695338112624446	0.827783467410055	0.695338112624446	3	-	-	0.60524179975777
138146	TGGGGTGGGTTTTGTGTGTTCAAACTGTCATTTTATTTTTACGTTGTTAGATATAGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGCAGGTAGAAGTAGAGGTTAAGGAGGGTGATGATGGCTATGATGGTGGGGATGATGAGGCTATTGTTT|AGAGCTTGTCTCAATGGATCTAGACCTTCATCGCCCTCTGATCGCCGATCACCTCTGAGACCCAACTTGCTCATA	1	1	0.899266171301115	0.897571427984624	N	N	2.94330723499324	3.66169703331943	2.94330723499324	splitr	10	0	0	0	N	0	N	N	0	0	ENSG00000225630	ENSG00000230199	-	-	1	1	566063	243138386	intron	downstream	RP5-857K21.8	RP11-331N16.1	565020	243138307	+	+	0	565835	243138485	-	-	N	1	-	Y	SKBR3_13_2_1	26	0	25	24	2	1	N	N	0	0	2	0.827783467410055	0.637393269905742	0.827783467410055	0.637393269905742	2	0	-	0.60524179975777
121067	TGCAGCGGCCGGTAGCCCGCATAGATGTACGGCTTCCAGAAGAGCGGCGGCACCTCAGCTCGATCCACCGTGAAGACAGGCTCTGGCTGCAGAGATAGCTGAGGCTCCTGGATGACCTGCCGCAGACTCGGCAGGAGGTGGCTGAGTTTCTGGGCCATGGCCATGGCTGTGGGCCTGGGCAGGGAGCTGGGAGAG|GAGCCGAGCTGGGAGGGCCGCGGGGGCCGGGTCGGCGGAGCTGGCAGATAAAAGAGCAGCCGGGCAGCGGCCCCGCCC	1	0.983978247735552	0.311204357582937	0.306030290211129	Y	Y	2.97680063257943	2.77635265323323	2.77635265323323	splitr	273	1	0	0	Y	0	N	N	225	0	ENSG00000182749	ENSG00000207302	+	-	1	1	26197744	26204096	intron	upstream	PAQR7	Y_RNA.602	26187701	26203987	-	+	0	26190361	26201987	+	-	N	4.99922788766552	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	2	0.612559765883441	0.745005120669049	0.745005120669049	0.612559765883441	1	4	-	0.60524179975777
24731	AGGACATGAAGACAGTTCCTGTCATACCTTTTAAAGGTATGGAGAGTTGGCTTGACTACCCTGTGTGGAGCAAGTTTTAAAGAAGCAAAGAACTCAGAATTCATGCTTGAAGAAATGC|AGGCAGACCTGTTATCCTAAACTAGGTGAGTCAGCTTTTGGTACATGTGATGATTTTCAGTGTAACCAATGATGTAATGATTCTGCCAAATGAAATATAATGATATCACTGTAAAACCGTTCCATTTTGATTCTGAGGTTACTCTACTAACAAGCATCACACATTTGTATTTTGCCCTGATTAATATGTTGGCTTCGCTTTCAGGGTTTTTAATGACCACAACAAGCAAGCATGCAGCTTACTGCTTGAAAGGTGAGGATTGGAAATGTTGGGACTATTATAATTGCAGAATACATGATGATCTCAATCCAACTTGAACTCTCTCACTGATTACT	3	1.57692345178237e-06	0.628662002269596	0.887412098001787	N	Y	3.13805549915667	3.66488952858494	3.13805549915667	splitr	453	0.966101694915254	0	1	N	0.245762711864407	N	N	1271	0	ENSG00000112159	ENSG00000234741	+	+	6	1	90529442	173838020	intron	intron	MDN1	GAS5	90352218	173833038	-	-	0.966101694915254	90431272	173833646	+	+	Y	1.04564537817288	1	N	SKBR3_13_2_1	3	0	2	1	2	1	N	N	0	0	4	1.16717468904818	0.935395318173362	1.16717468904818	0.935395318173362	3	3	0	0.60524179975777
115157	CCTTTCGCTGCTGCGGCCGCAGCCATGAGTATGCTCAGGCTTCAGAAGAGGCTCGCCTCTAGTGTCCTCCGCTGTGGCAAGAAGAAGGTCTGGTTAGACCCCAATG|AAAAAAAAAAAATCGCCAATAGGTAGGGAATAAGTTACCCCCTGC	1	0.0408497730036621	0.311204357582937	0.306030290211129	N	N	3.77104735399867	3.0024043842637	3.0024043842637	splitr	20	0.244444444444444	0.333333333333333	0	Y	0.377777777777778	N	N	129759	0	ENSG00000108298	ENSG00000121101	+	-	17	17	37360980	56769416	coding	intron	RPL19	TEX14	37356536	56634042	+	-	0.244444444444444	37357542	56769035	+	-	N	-	1	N	SKBR3_13_2_1	27	0.84	12.6666666666667	2	6	1	N	N	0	0.84	6	0.645671104579843	0.413891733705027	0.645671104579843	0.413891733705027	2	-	0	0.60524179975777
116730	TGGCCCACATGGCCTCCAAGGAGTAAGACCCCTGGACCACCAGCCCCAGCAAGAGCACAAGAGGAAGAGAGAGACCCTCACTGCTGGGGAGTCCCTGCCACACTCAGTCCCCCACCACACTGAATCTCCCCTCCTCACAGTTGCCATGTAGACCCCTTGAAGAGGGGAGGGGCCTAGGGAGCCGCACCTTGTCAAAAAAAAAAAAAAAAAAAAAAA|GACAAAATCGACCATAAAAGACCAAAAAAAAAAAAAAAATCAGAAAACCCCCACCTAATCCACAGAAAGTAATGTCTTTCCCCTCCCC	1	1	0.800133926999915	0.844771979185218	N	N	2.52954133600693	2.42366580893743	2.42366580893743	splitr	57	0	0.181818181818182	0	N	0.261363636363637	N	N	62936	6889	ENSG00000111640	ENSG00000155506	+	-	12	5	6647537	154197167	utr3p	utr3p	GAPDH	LARP1	6643093	154092462	+	+	0	6647526	154194437	+	-	Y	-	-	N	SKBR3_13_2_1	90	0.607594936708861	46	2	2	1	N	N	0	0.607594936708861	2	0.827783467410055	0.653948939253943	0.827783467410055	0.653948939253943	3	-	-	0.60524179975777
111743	GGGGGCGCATGGCTCCGCCCCGCCGGGACCCCGCCCCCGGCCC|CTCGCGGGGACACCGGGGGGCGCCGGGGGCCTCCCACTTATTCTACACCTCTCACGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCCTCACTAATTAGATG	102	1	0.062569585544213	0.268560762733867	N	Y	2.63404330130111	2.91403521254583	2.63404330130111	splitr	34	0	0	0	N	0.348837209302325	N	N	751	0	ENSG00000112715	ENSG00000226958	-	+	6	X	43754224	108297792	upstream	intron	VEGFA	RN28S1	43737921	108297361	+	-	0.441860465116279	43737865	108297695	-	+	Y	-	1	N	SKBR3_13_2_1	5	1	5	5	2	1	N	N	0.68	1	2	0.413891733705027	0.827783467410055	0.827783467410055	0.413891733705027	1	-	0	0.60524179975777
139679	TACTGCCGGCTAAAGCTGCGCTCTCCTAGCCGGAAGGGTTGTGAGGAGTTGGTGTAGGTTGCCACTGGCACCCGGGCAAAGGTGGCATTGTTGGCTGATGGTGG|TACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTG	1	0.660087552081805	0.205558172728075	0.155228020814782	N	N	3.26824964015148	3.68105312311849	3.26824964015148	splitr	1	0	0	1	N	0.03125	N	N	5522	0	ENSG00000106628	ENSG00000162669	-	+	7	1	44163957	91870426	coding	intron	POLD2	HFM1	44154286	91726323	-	-	0	44161607	91853109	+	+	Y	-	1	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0	1	2	0.504947915120133	0.430447403053228	0.504947915120133	0.430447403053228	2	-	0	0.60524179975777
126705	GATCAGGATCTGCTCCAGATCTGCATCATATTGTTTCTCAATCTTCTGCTGCACCTCCCGGCTCAGGCCATATGCAGGTCCCCTGTTGGCCATTCCAATGGGTGGCGGTGGCTGCGGGG|CGGCGTCCTGACCGCGTCCGACGGGCTGCTGGCGGGCAACGAGAAGCTAACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGCGGCCAACGGCGAGCTAGAGGTGAAGATCCGCGACTGGTACCAGAAGCAGGG	1	1	0.311204357582937	0.306030290211129	N	N	3.18867520302942	3.26613006744921	3.18867520302942	splitr	2	0.0168067226890757	0.0168067226890757	0	N	0.0672268907563026	N	N	10309	58670	ENSG00000158710	ENSG00000171345	-	+	1	17	159895522	39684560	coding	coding	TAGLN2	KRT19	159887897	39679869	-	-	0.0168067226890757	159890325	39684302	+	+	Y	-	0.940076100105234	N	SKBR3_13_2_1	2	0	1.5	1	1	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	2546	0.60524179975777
107088	AAACTGGTCATTTATTAGCAGTGGTACAACTGTTTGGCATAACAGGTTTCCAGTAAATAGGCATGGAGTTGCATGGCGGTGACAGAGCCAGGCGCAGGTGCAG|ATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAA	3	0.431662981341162	0.0795862949866265	0.0910743065647112	N	N	3.30185743844452	3.46704205511183	3.30185743844452	splitr	9	2.22044604925031e-16	2.22044604925031e-16	0	N	2.22044604925031e-16	N	N	3519	0	ENSG00000131143	ENSG00000252318	-	+	16	2	85840608	133038738	utr3p	intron	COX4I1	AC097532.1	85833290	133038647	+	-	2.22044604925031e-16	85840498	133038714	-	+	Y	-	1	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.504947915120133	0.430447403053228	0.504947915120133	0.430447403053228	3	-	0	0.60524179975777
76517	CGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACT|AAAAAAAAAAAAGGCCGCACGCGTTGACTCACGCCTGTAGTAC	8	1	0.059876086506749	0.133037440763108	N	N	3.23999710710482	3.37023110089298	3.23999710710482	splitr	18	0.395348837209303	0.395348837209303	0	N	0.581395348837209	N	N	14698	361	ENSG00000187514	ENSG00000118046	+	+	2	19	232578251	1228434	utr3p	intron	PTMA	STK11	232571605	1205798	+	+	0.395348837209303	232577586	1208618	+	+	Y	-	0.90160235782645	N	SKBR3_13_2_1	110	0.88	53.2	10	5	1	N	N	0.472527472527473	0.88	5	0.75328295534315	0.413891733705027	0.75328295534315	0.413891733705027	2	-	11	0.60524179975777
43824	ACACTCGTCTCCACACCTCCTACCTCAAAGTCCTACGCACCTACCCTTCACGTCTCTCCAAAGCAACTGAATTAAAGCGCCTACTGGCCTTGGCGGCGC|AGGTCCCAAGATTTTGACTGATTGGTTGTACGACTAGAGTTGCTGGAGTTCAAGTATTTTCATTTTAACTATTCAACTGAAAGCAGTGCGTTACAACAGAACACGGGTTCCAAAGAATTTACTGAGA	1	1	0.311204357582937	0.306030290211129	N	Y	3.47804449069255	3.56911164413597	3.47804449069255	splitr	226	1	0	0	Y	1	N	N	1029	799	ENSG00000177570	ENSG00000182307	+	-	8	8	119634234	146281416	intron	upstream	SAMD12	C8orf33	119201698	146277764	-	+	0	119633892	119680687	+	-	N	0.527754889261711	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	3	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	1	20	-	0.60524179975777
139019	GGAAAACAGAAAGATATTCAAAGAACTGATGAAGAAACAACTGATAATCAAGAAGGCAGTGTGGAGTCATCTGAAGAGGGTGAAGACCAAGAACATGAAGATGATGGTGAAGATGAAGATGATGAAGATGATGATGATGATGACG|CCAAGAAGCAGAAGACCGACGAGGATGACT	1	0.271150800715999	0.800133926999915	0.844771979185218	N	N	2.59159067973503	3.24519134225975	2.59159067973503	splitr	16	3.33066907387547e-16	3.33066907387547e-16	0	N	3.33066907387547e-16	N	N	12701	0	ENSG00000156802	ENSG00000214182	+	-	8	13	124428590	82264535	coding	intron	ATAD2	PTMAP5	124332090	82264203	-	+	3.33066907387547e-16	124382184	82264504	-	-	Y	-	1	N	SKBR3_13_2_1	8	0.145454545454545	6.5	5	2	1	N	N	0.145454545454545	0	2	0.827783467410055	0.513225749794234	0.827783467410055	0.513225749794234	2	-	0	0.60524179975777
136590	CTCGTGGTGGTGCCCGTTGTGAGATCCCAGAGGCGCAGGGTTCCATCCCAGGAGCCTGAGAGGGCAAACTGGCCATCTGAGGAGATAACCACATCACTAACAAAGTGGGAGTGACCCCGCAGAGCACGCTGTGGAATTCCATAGTTGGTCTCATCCCTGGTCAGTTTCCACATGATGATG|GTCTTGATGATCTCCTCCTTCTTGGCCTGGAGGTGCTCTTCACGGTGCTTGCGTGCTTCCTTGGTCTTAGACCTGCGGGTCTCAGCCTGGTCAGCCAGGAGCTTCTTGCAGGCCTTGTCTGCCTTCAGGTTGTGGATGTGTTCCATGAGGATCCGCTTGTTTTTGAACACATTCCCCTTCACCTTCAGGTACAGGCTGTGATACATGTGGCGATCAACCTTCTTAGATT	1	0.0213238303443881	0.311204357582937	0.306030290211129	N	N	3.4033579660152	3.24991303975317	3.24991303975317	splitr	15	0	0	0	N	0.0833333333333334	N	N	18136	0	ENSG00000204628	ENSG00000236762	-	-	5	10	180675096	122893237	coding	intron	GNB2L1	RP11-159H3.1	180663909	122892604	-	-	0	180669338	122892636	+	-	Y	-	1	N	SKBR3_13_2_1	7	0	5	3	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	0	0.60524179975777
26573	CCTGTTCACTTGCCATTACTGAGGGAATCCTGGTTA|GTTTCTTTTCCTCCGCTGACAAATATGCTTAAATTCAGCGGGTCGCCACGTCTGATCTGAGGTCGCGGGCCTCG	750	0.000328957790428833	0.822105412071939	0.9961387436811	N	Y	3.7040210021133	3.48383749183115	3.48383749183115	splitr	110	0.972222222222222	0	0.45	N	0.888888888888889	N	N	0	0	ENSG00000184319	ENSG00000141161	-	-	22	17	51239737	33516364	upstream	intron	AC002055.4	UNC45B	51195376	33474836	+	+	0.972222222222222	21265456	33478209	-	-	Y	-	1	N	SKBR3_13_2_1	2	1	1.05	1	1	1	N	N	1	1	20	0.662226773928044	0.571170592512938	0.662226773928044	0.571170592512938	2	-	0	0.60524179975777
128717	GCAGCCTTCTTCTCGGCCCGGGCCAACAGTCTCTGCTTCTTCTCTTGCTTTGTCTCTGG|TCTGTACTTGTGGGCCAGCTTAAGCAGCTGAGTGGCTGTTTTGGAGGTCCAAGGCCTGGGTAAACTGGTTAATTGCAGGAGGCACTTTCAGCTACTTATAGTGGATAGCTCTTTGACACGGCAACCTGATATAGTGGGGCCATTTGACAAAGCAGGTGAGGTC	2	0.365212191967802	0.80060201065389	0.0756675521285768	N	Y	3.09292782380399	3.47080361183081	3.09292782380399	splitr	222	0.711864406779661	0.711864406779661	0	N	0.728813559322034	N	N	16054	0	ENSG00000148303	ENSG00000235294	-	-	9	3	136218281	181223667	coding	intron	RPL7A	RP11-4B14.1	136215069	181222863	+	-	0.711864406779661	136216802	181223361	-	-	Y	-	1	N	SKBR3_13_2_1	32	0	17	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
88605	CCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCA|AGGAAGAGAGAGACCCTCACTGCTGGGGAGTCCCTGCCACACTCAGTCCCCCACCACACTGAATCTCCCCTCCTCACAGTT	1	0.307271753597434	0.311204357582937	0.306030290211129	N	N	3.41273534243362	3.23680461183931	3.23680461183931	splitr	14	0.111111111111111	0.111111111111111	0	N	0.160493827160494	N	N	129759	62936	ENSG00000108298	ENSG00000111640	+	-	17	12	37360980	6647537	coding	utr3p	RPL19	GAPDH	37356536	6643093	+	+	0.111111111111111	37360878	6647372	+	-	Y	-	-	N	SKBR3_13_2_1	72	0	27	4	3	1	N	N	0	0	3	0.612559765883441	0.562892757838837	0.612559765883441	0.562892757838837	2	-	-	0.60524179975777
141210	GATGTGCTTCTGGGAATCCAGGCGGACAATGAAGGACGGGATGTTCACCACCTGCTTGCGGACCCTGATATGGCGCTGGCGGATCAGCACGCGAGCGTGGTGGATGGACTTGGCCAAGCCCAGCTTGAAGACCTGGGTCTGCAGGCGTCTCTCTAAGAAATCCTCTATCTTCAGGCCCAGGATGTAATCCAG|CTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACT	1	1	0.311204357582937	0.306030290211129	N	N	3.51104337473878	3.42936294528359	3.42936294528359	splitr	16	0.113207547169811	0.113207547169811	0	N	0.216981132075472	N	N	8800	3	ENSG00000170889	ENSG00000230021	-	-	19	1	54752862	659930	coding	intron	RPS9	RP5-857K21.4	54704610	536816	+	-	0.113207547169811	54710203	569095	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	9	0	9	9	2	1	N	N	0	0	2	0.827783467410055	0.794672128713653	0.827783467410055	0.794672128713653	2	-	0	0.60524179975777
138111	AATAGAATGATCAGTACTGCGGCGGGTAGGCCTAGGATTGTGGGGGCAATGAATGAAGTGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTTTGTTATAGTTTTTTATTTTTATG|GGCTTTGGTGACTCTAGATAACCTCGGGCTGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATC	2	1	0.935695919090345	0.96241881209261	N	N	2.67702089872798	3.67745940026886	2.67702089872798	splitr	11	0	0	0	N	0	N	N	3	0	ENSG00000230021	ENSG00000212932	-	-	1	21	659930	48111157	intron	upstream	RP5-857K21.4	RPL23AP4	536816	48110676	-	+	0	569037	9827286	-	-	Y	0.828962371721779	-	N	SKBR3_13_2_1	4	1	3.66666666666667	3	3	2	N	N	0	1	3	0.827783467410055	1.24167520111508	1.24167520111508	0.827783467410055	1	0	-	0.60524179975777
98571	TGCTGGCATAGATTACCAGAGATTGAACCAACTGCTCCTTCCTTCCTCGTTGGGGGATTAGGGCGAGGGAAGGTGGGGAGGGGGGAGAGGGGACGAATCAAGGTGGGTTTCAGTTTTCCCACCTCAAAAAAGGAAATTAAAAAAACGGACAGGAAAAGGGCAAAAAGAGCTCAATAATATTTACTATTTCAGGGACGCTTCCCCCAACACACACACACACACACAC|ACACACACACACACACACACACACGCCCGCCCCCCGCTCCACTGTTCTGTTGTCAGTTG	32	0.649837086427411	0.765886557048763	0.704053544407014	N	N	2.63798928333739	2.25850683555418	2.25850683555418	splitr	51	0.101694915254237	0.355932203389831	0	N	0.559322033898305	N	N	3680	1615	ENSG00000082898	ENSG00000160967	-	-	2	7	61765761	101927250	utr5p	intron	XPO1	CUX1	61704984	101459240	-	+	0.101694915254237	61764907	101646592	+	-	Y	-	2.73627587579618	N	SKBR3_13_2_1	63	0.727272727272727	39.5714285714286	15	7	1	N	N	0.0678733031674208	0.727272727272727	7	1.63073343079781	0.45528090707553	1.63073343079781	0.45528090707553	3	-	13.2857142857143	0.60524179975777
141634	ACTCCAACCAGTGCAAATGACTTAGTGCAAATTAAATTCAGAAGGGACGGGGGAAACAGAGTCGTGGAGGCTTTGAATCTCTCAGAAAAAAGGAAAGACAGGAAAGCTCAGAAACAAAGAGACAGAAGGATGAAAAAGAAGAAGAGG|AAGAAAGTGGGGAGGAAGAGGAGGAGGAAAAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGAGGAAGCTGAGTCTGCTACAGGCAAGCGGGCAGCTGAAGATGATGAGGATGATGATGTCGATACCAAGAAGCAGAAGACCGACAAG	1	0.983978247735552	0.704121951840997	0.776581847210919	N	N	2.5518988635295	2.27613251732018	2.27613251732018	splitr	23	0.0612244897959183	0.0272108843537415	0	N	0.0816326530612245	N	N	83603	0	ENSG00000130600	ENSG00000232063	-	+	11	9	2022700	97123230	intron	intron	H19	RP11-307E17.8	2016406	97094758	-	+	0.0612244897959183	2016831	97109676	+	+	Y	-	1	N	SKBR3_13_2_1	9	0.470198675496689	8.5	8	2	1	N	N	0	0.470198675496689	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	0	0.60524179975777
132931	CCTGTGGCTTTCTGGGCAGGAACCTTCTGGGCTGGAGCCTTTTTACTCGCGGCGGTGATCTTTTTTGCTGGAACTTTAGCAGCAGCAGCAGCAGC|AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCTTTGCAGGCCCAGCCACCAATTCAGCAGCCACCGATGCAGCAGCCACAGCCTCCGCCCTCCCAGGCTCTGC	22	0.644474285255931	0.931554447738365	0.879875578429313	N	N	3.17932833183454	1.96801119216532	1.96801119216532	splitr	21	0.0631578947368421	0.0631578947368421	0	N	0.231578947368421	N	N	7767	637	ENSG00000188846	ENSG00000099917	-	-	3	22	40506549	20941919	coding	coding	RPL14	MED15	40498783	20850200	+	+	0.0631578947368421	40503535	20920815	-	-	Y	-	0.676542598904126	N	SKBR3_13_2_1	2	0.317757009345794	1.5	1	1	1	N	N	0.05	0.317757009345794	2	0.496670080446033	0.827783467410055	0.827783467410055	0.496670080446033	3	-	12	0.60524179975777
20796	TCATGACTTCCTATTGTTCATGTGATTTTTTTTTTTTTGAGACTGAGTATCACTCTATCGTCAGGCTGGAGTGCAATGGTGCGATCTTGGCTCACTGCAACTCCGCCTCATGGGTTCAAGCCATTCTCCCGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGCACCTACCATCA|GCAGAGAAAGATGGGGATAGATTCAGATTTGATTCACTGTCAATTCCAGGGGTGGGGAACAGGAGTTTAGAAGGGCAGAAAGAGATGGGGATAGAGTCATATTTGGGAAGCCTAGAGGCATGTCCATTGATAAGAGATTAGATGGGAGCCTTGACCTCTGATGG	3	1	0.304103290313703	0.548268873166959	N	N	3.49847350305486	3.31125774280189	3.31125774280189	splitr	143	0	0	0	N	0	N	N	1179	0	ENSG00000196704	ENSG00000253929	+	-	17	8	66253305	128404876	intron	intron	AMZ2	RP11-382A18.2	66244145	128351519	+	+	0	66250049	128353289	+	-	Y	1.2061696034906	1	N	SKBR3_13_2_1	12	1	6.6	1	4	1	N	N	0.852941176470588	1	5	1.25823087046328	1.34100921720429	1.34100921720429	1.25823087046328	1	17	0	0.60524179975777
141578	ACCAGGATGCTCAGGGCGGCCTAGGCTTGGCTTTGTGAAGTGTGTGCTGCTACGCGTCTTGTTTTTGGCAGTTTGGTGTCTCTGAGGGAGGGGAGGAGAGTGGCAACC|AGGGGAAGATGGGGTGCTGGAGGAGAGCTTGTGGGAGCCAAGGAGCACCTTGGACATCTGGAGTCTGGCAGGAGTGATGACGGGTGGAGGGGCTAGCTCGAGGCAGGGCTGGTGGGGCCTGAGGCCAGTGAGGAGTGTGGAGTAGGCGCCCAGGCATCGTGCAGACA	4	1	0.176481513155368	0.355911414673713	N	N	3.22167408707565	3.05740813947137	3.05740813947137	splitr	7	0.0648148148148147	0.0648148148148147	0	N	0.166666666666667	N	N	10683	83603	ENSG00000104419	ENSG00000130600	-	+	8	11	134314265	2022700	utr3p	intron	NDRG1	H19	134249414	2016406	-	-	0.0648148148148147	134250867	2018999	+	+	Y	-	4.27662777762091	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.562892757838837	0.827783467410055	0.827783467410055	0.562892757838837	1	-	4849.5	0.60524179975777
77011	TCGTGCAGGTAGAGGCTTACTAGAAGTGTAAAAACGTAGGCTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATTGTGAAGATGATAAGTGTAGAGGGAAGGTTAATAGTTGATATTGCTAGTGTGGCGCTTCCAATTAGGTGCATGAGTAGGTGG|TAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAACATGGGTCC	3	0.93431505791873	0.586398215173431	0.197936974829114	N	N	3.64759957832565	3.5132028002344	3.5132028002344	splitr	18	0	0	0.142857142857143	N	0.0124999999999998	N	N	3	0	ENSG00000230021	ENSG00000252318	-	+	1	2	659930	133038738	intron	intron	RP5-857K21.4	AC097532.1	536816	133038647	-	-	0	569576	133038704	-	+	Y	0.828962371721779	1	N	SKBR3_13_2_1	4	1	3.71428571428571	2	7	3	N	N	0	1	7	1.24167520111508	0.811227798061854	1.24167520111508	0.811227798061854	1	0	0	0.60524179975777
24775	TGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCG|CCTACTTACAGGACTCAACATACTAATCACAGCCCTATACTCCCTCTACATAT	1	1	0.782401824934652	0.833518795502187	N	N	3.29123930559352	3.32589375402559	3.29123930559352	splitr	3	0.0566037735849056	0	0	N	0.188679245283019	N	N	0	31	ENSG00000162669	ENSG00000132570	+	+	1	5	91870426	134343649	intron	intron	HFM1	PCBD2	91726323	134240596	-	+	0.0566037735849056	91853074	134262548	+	+	Y	1	1.2575464834446	N	SKBR3_13_2_1	2	1	2	2	2	3	N	N	1	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	0	1	0.60524179975777
138216	GTGGAATCCATTTTGTTAACACCGACAATTAGTTGTTTCACACCCAGTGTGTAAGCCAGAAGGGCATGCTCTCGGGTCTGCCCATTCTTGGAGATACCAGCTTCAAATTCACCA|ACCCCAGCAGCCACCGCCACCACCCAGCTACAGCCCTGCTCGGAACCCCCCAGGGGCCAGCACCTACAATAAGAACAGCAACATCCCTGGCTCAAGCGCCAATACCAGCACCCCCACCGTCAGCAGCTACA	2	1	0.14642513198438	0.165868294288181	N	N	3.63296356710195	2.73714596009514	2.73714596009514	splitr	16	0.0350877192982455	0.0350877192982455	0	N	0.0350877192982455	N	N	108743	3785	ENSG00000156508	ENSG00000105323	-	-	6	19	74233520	41813811	coding	coding	EEF1A1	HNRNPUL1	74225473	41768391	-	+	0.0350877192982455	74228916	41810025	+	-	Y	-	1.31761484174806	N	SKBR3_13_2_1	15	0.00925925925925926	11.75	10	4	1	N	N	0	0.00925925925925926	4	0.976784491543865	0.894006144802859	0.976784491543865	0.894006144802859	2	-	45.75	0.60524179975777
92894	GATGAAGACCTTGCCCTCGTGGCAGCCGCTGGGCTCAGTGTAGTACATGAACATCAGCGCCACGGCCGCGATCGACAGCAAGTAGAAGAGGAGAGTGAAGAAGAAGAGGCCTGCGTACCAGGCACGGGAATCGCACTCCTCGGCCTTGCCCAGCCACCGCTGGTTCCAGGAGTGCGCAAAGTCGATGAGCAGCACCAGCTGGATGAGGATGAAGAGGAA|AGAGAAAGCCAAGATCCACTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGAACGTGGAGAAGAAAATTGACAAATACACAGA	1	0.456026046492622	0.447538936456759	0.5	N	N	3.42204236083514	3.29549537585246	3.29549537585246	splitr	15	0	0	0	N	0	N	N	2991	0	ENSG00000168528	ENSG00000136149	-	+	1	13	31907525	55015450	coding	intron	SERINC2	RPL13AP25	31882412	55014839	+	-	0	31898652	55014968	-	+	Y	-	1	N	SKBR3_13_2_1	10	0	9.5	9	2	1	N	N	0	0	2	0.827783467410055	0.778116459365451	0.827783467410055	0.778116459365451	2	-	0	0.60524179975777
135453	CAGACTGGAAGACACTTCAGATCTGAGGTTGGATTTGCTCATTGCTGTACCACATCTGCTCTAGGGAATCTGGATTATGTTATACAAGGCAAGCA|TTTTTTTTTTTTTTTTTAAAGACAGGAGAGCAGTCTTTAAAGACAGAAAAA	4	0.10517826263076	0.961195691255898	0.928526519438958	N	N	3.6491271616355	2.625200291216	2.625200291216	splitr	26	0.490196078431372	0.490196078431372	0	N	0.509803921568627	N	N	2374	1094	ENSG00000119699	ENSG00000183431	+	+	14	1	76448092	38456593	utr3p	intron	TGFB3	SF3A3	76424442	38422647	-	-	0.490196078431372	76425064	38445047	-	-	Y	-	-	N	SKBR3_13_2_1	40	0	23.5	7	2	1	N	N	0	0	2	0.579448427187038	0.413891733705027	0.579448427187038	0.413891733705027	3	-	-	0.60524179975777
116859	CTCATCTGATCGACAAAGGGATGCTGACATCCACCACAGAGGACGAGTAGGGGCCACCCAGGGCCAGGAGAACAGGAACAGAACTGAGCAGGGGCAGGTCTCCAAGGCAAGCCCAGCTGGTGTGACTTAGACAATGACGAGGCTTCAACTCACTGTC|TTTTTTTTTTTTTTTTTTTGGAGAGAGTCTCGCTGTGTCGCCCAGGCT	1	0.561522878466796	0.800133926999915	0.844771979185218	N	N	3.70889084821189	2.62200779595049	2.62200779595049	splitr	22	0.333333333333333	0.333333333333333	0	N	0.479166666666667	N	N	1134	74	ENSG00000101290	ENSG00000180592	+	-	20	10	5178533	21814611	utr3p	utr3p	CDS2	C10orf140	5107432	21802407	+	-	0.333333333333333	5170987	21803161	+	+	Y	-	-	N	SKBR3_13_2_1	16	0.62	10	4	2	1	N	N	0	0.62	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	2	-	-	0.60524179975777
136973	ACACCCATTGCAGCATGATTGGTATGTTGCTCTTGCATTATTGGGAATGGTAAATCAGTTATGGGCTAGAAACTATGGAATGGCCGTCCTCATATGTGATGGGATTGCTGATTCAGACTTCCCTATTTTCCATACAATTTTGTTATGTGCAGAGTTCTAAAGCCATTTTATAATACTGCAGTATCCCCCCC|CCCCCACCTTTTTTTTTTTTGAGACAGAATCTCACTTTGTCGCCCAGGCTG	1	0.547013857249903	0.899266171301115	0.897571427984624	N	Y	3.34831435801417	2.93388581588485	2.93388581588485	splitr	242	0	0.470588235294118	1	N	0.490196078431373	N	N	4573	0	ENSG00000108256	ENSG00000228114	+	-	17	4	27621166	191010176	utr3p	upstream	NUFIP2	DUX4L3	27582855	191008560	-	+	0	27586614	40713886	-	-	Y	-	-	N	SKBR3_13_2_1	49	0.381818181818182	28	7	2	1	N	N	0	0.381818181818182	2	0.827783467410055	0.45528090707553	0.827783467410055	0.45528090707553	2	-	-	0.60524179975777
139392	CTCTTCCTTCAGGCCTTCGATCTGCATCTCCAGGTCGGTCCTGGCCAGGGTCAGCTCATCCAGCACCCTGCGCAGGCCGTTGATGTCGGCCTCCACGCTCATGCGCAGAGCCTGTTCCGTCTCAAACTTGGTTCGGAAGTCATCTGCAGCCAGACGGGCATTGTCGATCTGCAGGACAATCCTGGAGTTCTCAATGGTGGCACCAAGAAT|CACAGCTCTGTCTCCCCATCTAGACTTGGAGCTTCTGTATCTAGCCCCAGGGCTGACTCCAGCACTAGTAAACATTTAATGATTATT	8	1	0.489062389944115	0.566245080398371	N	Y	3.71145150129163	3.57229479183167	3.57229479183167	splitr	297	1	0.0114942528735632	0	Y	0.0114942528735632	N	N	58670	31	ENSG00000171345	ENSG00000232938	-	-	17	17	39684560	81188573	coding	upstream	KRT19	AC139099.1	39679869	81174666	-	+	0	39681525	39693350	+	-	N	-	-	N	SKBR3_13_2_1	3	0	2	1	3	3	N	N	0	0	4	1.30789787850789	0.662226773928044	1.30789787850789	0.662226773928044	4	-	-	0.60524179975777
72765	GCAGTCTCAGATCCTGACGGTGCAGCAGCCCGCAGCCTCAGCCAGGGAGTCCCAGCCGCTTTCAATGGAGGAGAAGCCCGGCCAGCCACAGCCTCAGCACCATCACAGCCACCACCATCCGCACCATCACCCTCAG|CACCACCACCCACCACCCACCACCATCACCCACCACCACCACCACAACCACCACCACCACCCACCACCACCACCACCATCCACCACCACCCACCACCCACCACC	1	1	0.800133926999915	0.844771979185218	N	N	2.77232056535123	1.82429318616324	1.82429318616324	splitr	0	0.461538461538462	0.432692307692308	0	N	0.326923076923077	N	N	4573	3	ENSG00000108256	ENSG00000113889	+	-	17	3	27621166	186461743	coding	intron	NUFIP2	KNG1	27582855	186435065	-	+	0.461538461538462	27621006	186435627	-	-	Y	-	0.91617770326907	N	SKBR3_13_2_1	10	1	6.5	3	2	1	N	N	0	1	2	0.438725237727329	0.430447403053228	0.438725237727329	0.430447403053228	3	-	0	0.60524179975777
90031	CATGCCTTTGTGAGCACCCTCACCCGGGGGGACCTGTCCTCCATCCGCTGGGTCTGCTCCTCGCTGCGCCATGCCCAGCCCACCTGCCCTGGCGCCCAGCTCTGCACGGTCTACTACGCCTCCCTCAACTTCCGCGACATCATGCTGGCCACTGGCAAGCTGTCCCCTGATGCCATCCCAG|GACCGCTCGCGTCGCATTTGGCCGCCTCCCTACCGCTCCAAGCCCAGCCCTCAGCCATGGCATGCCCCCTGGATCAGGCCATTGGCCTCCTCGTGGCCATCTTCCACAAGTACT	1	0.414403001072419	0.612610548302747	0.693969709788871	N	N	3.33528047801382	3.30847582269032	3.30847582269032	splitr	10	0.00877192982456154	0.00877192982456154	0	N	0.0175438596491229	N	N	94538	24283	ENSG00000169710	ENSG00000197956	+	-	17	1	80056106	153508720	coding	utr5p	FASN	S100A6	80036215	153507075	-	-	0.00877192982456154	80042389	153508459	-	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	Y	N	0	0	2	0.45528090707553	0.645671104579843	0.645671104579843	0.45528090707553	2	-	-	0.60524179975777
131120	ATCGACGTCGTGATCCAGAAGTCCAGAGCTGAGGACTGCCTGTTTGCAGATTTCAGATACTCAGACTCCACCTTTACTTTTACCTATGTTGGCGGCCCCAGA|AGGAGTGAAGGCAATTTTGAAGGCATGACTACGACCTGCTCTGGCCACAAGAGCTAAGAGTTGCCAGGTGTTGTGGCTCAAACACTTTGAGATGCCAATCCCAACACTTTGAGAGGCCAAGGCAGGAGGATTGCTTGAGGCTAGGAGCTTGAAACCAGCCTGGGCAAC	2	1	0.14642513198438	0.165868294288181	N	N	3.53615261288309	3.67849247003875	3.53615261288309	splitr	4	0	0	0	N	1	Y	N	65	1837	ENSG00000232151	ENSG00000178104	+	-	1	1	149651107	145076186	intron	intron	RP11-277L2.2	PDE4DIP	149575482	144836157	+	-	0	149577660	145004781	+	-	N	-	3.939997259551	N	SKBR3_13_2_1	6	0.739130434782609	4.33333333333333	2	3	1	N	N	0	0.739130434782609	3	0.703615947298547	0.76156079001725	0.76156079001725	0.703615947298547	1	-	2.66666666666667	0.60524179975777
67490	CTCCTCTTCCGAGAGGGTCTCTGTGGCACTGATCGTGGCAGCAACATCTTCTCCTTCCTCAGGGACTGGGTCTGTTCTCAGCAGACCTTGCTCGCCGCGGTCCATGTCTCCAGCCCGCCGCCTCGTGTCCTCTGCAGCACCCCCGCCTGCAGCCCGTCCCGGCTCGGATCGCCCGCCGCGCCGCGCAGAGCTCCTCCTCGCCTCCGCCGGCGACTC|TAGCCGCCTCTTCAGCTCGCCATGGATCCCAACTGCTCCTGCGCCGCCGGTGACTCCTGCACCTGCGCCGGCTCCTGCAAATGCAAAGAGTGCAAATGCACCTCCTGCAAGAAAAGCTGCTGCTCCTGCTGCCCTGTGGGCTGTGCCAAGTGTGCCCAGGGCTGCATCTGCAAAGGGGCGTCGGACAAGT	1	0.095846817018221	0.311204357582937	0.306030290211129	N	N	2.95901616878018	3.53209488171704	2.95901616878018	splitr	6	0	0	0	N	0.0263157894736841	N	N	8580	2580	ENSG00000076554	ENSG00000125148	-	-	8	16	81143467	56643409	utr5p	utr5p	TPD52	MT2A	80870571	56642111	-	+	0	81083789	56642547	+	-	Y	-	-	N	SKBR3_13_2_1	8	0	5	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
140646	GCACCAGGTGGTCTCCTCTGACTTCAACAGCGACACCCACTCCTCCACCTTTGACGCTGGGGCTGGCATTGCCCTCAACGACCACTTTGTCAAGCTCATTTCCTGGTATGACAACGAATTTGGCTACAGCAACAGGGTGGTGGACCTCATGGCCCACATGGCCTCCAAGGAGTAAGACCCCTGGACCACCAGCCCCAGCAAGAGCACAAGAGGAAGAGAGAGACCCTCACTGCTGGGGAGTCCCTGCCACACTCAGTCCCCCACCACACTGAATCTCCCCTCCTCACAGTTGCCATGTAGACCCCTT|GAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGG	1	0.00340813431777197	0.311204357582937	0.306030290211129	N	N	3.49168728493972	2.18533368467738	2.18533368467738	splitr	25	0.0564516129032258	0.112903225806452	0	N	0.120967741935484	N	N	62936	14698	ENSG00000111640	ENSG00000187514	+	-	12	2	6647537	232578251	utr3p	coding	GAPDH	PTMA	6643093	232571605	+	+	0.0564516129032258	6647468	232576645	+	-	Y	-	-	N	SKBR3_13_2_1	77	0.267379679144385	47.5	18	2	1	Y	N	0	0.267379679144385	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
138266	CTGGTGTCAATGCGCACATCTGGAGTTCCCATCTCCTTCATGGCAAATTTCCGAATCTCTTTGAGTGCCCGAGGTGCACGCTTCTTGAAGCCCACTCCATGGATGCGCTTGTGAATGTTGATGGTGTATTCTCGGGTTACCACTTCGTTGATGGCAGAACGGCCCTTTTTCTTCTCGCCACCCTTCTTTGCGGGAGCCATTCTGCAGC|TTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGCTACTGGCAGGATCAACCAGGTAGG	1	1	1	0.935920242646516	N	N	3.29041392248633	3.78465029545248	3.29041392248633	splitr	15	0	0	0	N	0.0348837209302325	N	N	7633	0	ENSG00000071082	ENSG00000212932	-	+	2	21	101640494	48111157	utr5p	upstream	RPL31	RPL23AP4	101618177	48110676	+	+	0	101618770	9827088	-	+	Y	-	-	N	SKBR3_13_2_1	11	1	6	1	1	1	N	N	0	1	2	0.827783467410055	0.596004096535239	0.827783467410055	0.596004096535239	3	-	-	0.60524179975777
95780	GGCAGAGGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCATCTCAAAAAAAA|AAAAAAAAAACTTAAGATGGACACAGCTGACTGGACCCCCATCCTGCCTCACCCATGGGTGCTGCACCCCAGACCCATCCTGCCACTTCTATGTCTCTGGACCACAGGATGGTGGTGGCATTGCAGGTTGGCAAGTGGGCTGATGGGGTCCGCCCTCCTCACTGCTGAGCTCCTCACCTGGACAGTCTCCTGGACAAGGAGTTTCCAGCTGCTGGCTGGAGTCT	2	1	0.572228613671423	0.209300629116717	N	Y	3.33255199106474	3.12279699331701	3.12279699331701	splitr	118	0	0.835443037974684	0.333333333333333	N	0.860759493670886	N	N	5	1253	ENSG00000182329	ENSG00000141696	-	+	2	17	203062585	39968855	intron	utr3p	AC079354.1	LEPREL4	202937978	39958199	+	-	0	203002050	39958539	-	+	Y	-	1.29098674926183	N	SKBR3_13_2_1	15	0.775862068965517	15	15	3	1	N	N	0.775862068965517	0	3	0.827783467410055	0.836061302084155	0.836061302084155	0.827783467410055	2	-	30	0.60524179975777
94234	GCAGAATGTGCAGGTTTGTTACATAGGTATGCACGTGCCATGGTGGTTTGCTGCACCCATCAACCTGTCACCTACATTAGGTATTTCCCCTAATGTTATCCCTCCCCTAGCCCTCCATCCC|TACCACACATTCGAAGAACCCGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGCTGGTTTCAAGCCAACCCCATGGCCTCCAT	1	0.984069604198656	0.311204357582937	0.306030290211129	N	N	2.89252904482096	3.37655331069169	2.89252904482096	splitr	67	0.606060606060606	1.11022302462516e-16	0	N	1.11022302462516e-16	N	N	283	0	ENSG00000134490	ENSG00000237973	+	-	18	1	21017925	567996	utr3p	intron	C18orf45	RP5-857K21.6	20777719	566454	-	+	1.11022302462516e-16	20876058	567958	-	-	Y	-	1	N	SKBR3_13_2_1	36	1	23	9	3	1	N	N	1	0.607594936708861	3	0.620837600557541	0.653948939253943	0.653948939253943	0.620837600557541	3	-	0	0.60524179975777
108158	AGCACCAAATCTCCACCTCCATCATCACCTCAACCCAAAAAGGCATAATTAAACTTTACTTCCTCTCTTTCTTCTTCCCACTCATCCTAACCC|CCCTCCTAATACTAACTACCTGACTCCTACCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAGTGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATAACATTCACAGCCACAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACACCCTAGGCTCACTAAACA	2	0.000775195247566277	0.467754455729131	0.686272108117709	N	N	2.66910832488712	2.95951068232014	2.66910832488712	splitr	15	0.0537634408602149	0.0537634408602149	0	N	0.881720430107527	Y	N	54817	93473	ENSG00000198786	ENSG00000198886	+	-	MT	MT	14148	12137	coding	coding	MT-ND5	MT-ND4	12337	10760	+	+	0.0537634408602149	14131	10950	+	-	N	-	-	N	SKBR3_13_2_1	3	0	2.5	2	2	2	Y	N	0	0	2	0.513225749794234	0.827783467410055	0.827783467410055	0.513225749794234	1	-	-	0.60524179975777
141097	TGGCACCAGCAGGTCGGGCAGCAGGCAGAGGGCCCTCTCGGGGCGAAGGGGGCTGGGG|ATGCTGGTACAAGTTGTGGGACTGCATGCTACTGTCTAGAGCTTGTGTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCCGATCACCTCTGAGACCCACCTTGCTCATAAACAAAATGCCCATGTTGGTC	1	0.525604192486025	0.321839855309698	0.321669634186996	N	N	2.86382608382702	3.52101274054962	2.86382608382702	splitr	7	0.120689655172414	0.103448275862069	0	N	0.327586206896552	N	N	74211	0	ENSG00000141736	ENSG00000256393	-	+	17	12	37884915	93477451	coding	downstream	ERBB2	AC138123.2	37844393	93477374	+	-	0.120689655172414	37883968	93477310	-	+	Y	-	-	N	SKBR3_13_2_1	12	0	12	12	2	1	N	N	0	0	2	0.44700307240143	0.60428193120934	0.60428193120934	0.44700307240143	1	-	-	0.60524179975777
140313	CAAAAGGATAATGTTTTCATAATTTTTTATTGGAAAAAAAAAAAAAAAA|GACTAGCATTTACAACTTGGAATGGACGTAAACTGTAATTTCTTTGAACAGCAATGTTGATGGTTGTGCTGAAGTCCACAGCCACAGCCTACTCTGCCGGCTCCAAGTCATGGTTCAGAAGGTTTTAAAAACAGAGAGTCCAAAGATGCTCCCTTGGTAAATGTTTCTTATTAAAAATTTGTGTGAACAGTGACAGCCTGACACCTGTTTCACTCTAGAACAATGCAGACAACGCTAAACCAACATACACG	33	1	0.969651474200193	0.993716733610138	N	Y	2.37301559984114	3.54296933622177	2.37301559984114	splitr	26	0.510204081632653	0.510204081632653	0.388888888888889	N	0.551020408163265	N	N	0	9025	ENSG00000183668	ENSG00000198668	+	+	19	14	43773682	90874617	utr3p	utr3p	PSG9	CALM1	43757434	90863327	-	+	0.510204081632653	43757615	90871914	-	+	Y	-	-	N	SKBR3_13_2_1	67	1	26.9444444444444	8	18	1	N	N	1	0	18	0.438725237727329	1.481732406664	1.481732406664	0.438725237727329	2	-	-	0.60524179975777
137539	CCCCTACTCCTGCCGCTTCTGCTGCTGCCTGTGGCTGGAGGGTCCCCCTGGGGCTGAATCTTTGGGACTTGACCCCGTTCCCTCCCCCTTCCCTCACTCCCCAGCCGGGCGGGAGCATTTATTCCCCAGATTAATTCCCCTTTTGGGGGGGGGCGGGTGTGTGTGTGTG|TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTAGGTCCTGGACTGATTA	8	0.402535589937509	0.599049246383185	0.729625297471124	N	N	2.8297941300109	0.99952568929365	0.99952568929365	splitr	20	0.296875	0.296875	0.2	N	0.4375	N	N	3680	302	ENSG00000082898	ENSG00000144524	+	-	2	2	61765761	232674093	utr5p	utr3p	XPO1	COPS7B	61704984	232646381	-	+	0.296875	61764907	232673510	-	-	N	-	-	Y	SKBR3_13_2_1	27	0.754098360655738	14	3	5	1	N	N	0.103448275862069	0.754098360655738	5	1.28306437448558	0.504947915120133	1.28306437448558	0.504947915120133	1	-	-	0.60524179975777
116564	TAGAAAAAAAGGCAGACATACACATACACAGAAACACATATCTATCTGCAGCTCCTCCATGTGAAGCCCCTGAAACATACACACCCTGGAACTTTCCTCTCCTTATGCACAGATGGACAGGCTGCCTTCCCCTGTCTCTGGGCTCCCCCAATAGCCAGAATCCCTTCCGACTGGTCCCTTGCCCTGAATATCTGGGAA|CCCCCCCCCCCACACACACACCCCTACCTAGTCATATCACTCCTTTCAGGT	23	0.66457750603511	0.460070924949979	0.898096890997191	N	N	3.36191729946799	2.57334402080729	2.57334402080729	splitr	25	0.450980392156863	0.450980392156863	0.333333333333333	N	0.490196078431373	N	N	6106	359	ENSG00000165272	ENSG00000123104	-	+	9	12	33447609	26986131	utr3p	intron	AQP3	ITPR2	33441152	26490342	-	-	0.450980392156863	33441702	26814219	+	+	Y	-	1.11878885764941	N	SKBR3_13_2_1	2	0	1.33333333333333	1	1	1	N	N	0	0	3	1.24167520111508	0.438725237727329	1.24167520111508	0.438725237727329	2	-	2.33333333333333	0.60524179975777
4335	CACATGAGGGCCCAGCGGCCCGGTCCTGCCCCCCCCCCCCCCCCCCCCCCCCCC|CCCCTCCTCCCCCCCCTCCCCTGCAGCCCCACGGAGTCTACGCCGGGAGGAGTAGGAGGGCCGCTGCGGTAAGCTTTGAAGCCTAGGGTATGGGCCCAGGTGGATAGGCCACAGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAACATGGGTC	4	1	0.242952462011782	0.5	N	N	1.79646695523403	2.83986884469249	1.79646695523403	splitr	1	0	0	0	N	0	N	N	6	0	ENSG00000163884	ENSG00000252318	-	+	3	2	126076285	133038738	utr3p	upstream	KLF15	AC097532.1	126061478	133038647	-	-	1.11022302462516e-16	126062021	133038834	+	+	Y	-	-	N	SKBR3_13_2_1	27	1	6.8	1	4	1	N	N	0.473684210526316	1	5	0.471836576423731	0.546337088490636	0.546337088490636	0.471836576423731	1	-	-	0.60524179975777
136843	TCTGGGCCCAGCGAAGTGACAGGCTCAGACGCGTCGGGACCGGACCCGCAGCTTGCGGTCACCATGGGCTTCACGGGGTTCGGTAAAAAAGCTCGCACATTTGACTTGGAAGCAATGTTTGAACAAACTCGAAGGACAGCTGTGGAAAGAAGTCGCAAAACACTGG|GACCAGATTACAGAGGGGTATTGATTTGCCTTGCCCCCGCCCCCACCATCACAGTGTGTCCCTGTCCAGTGTTGGTGCTGTGTGGCATTGCTTGTGTCCATAGGAGTCCATCAAGGCAGAGCGGCAGAGCGGCAAGCAGAGCGGC	1	1	0.375556752806067	0.399915574091196	N	Y	3.40847927217468	3.43511609362884	3.40847927217468	splitr	311	0.958620689655172	0.00689655172413794	0	N	0.958620689655172	N	N	292	0	ENSG00000082068	ENSG00000215190	+	+	5	6	37753537	58287779	coding	intron	WDR70	GUSBP4	37379314	58272352	+	-	0	37381787	58275347	+	+	Y	-	1	N	SKBR3_13_2_1	3	0.941605839416058	2.33333333333333	1	2	1	N	N	0	0.941605839416058	3	1.01817366491437	0.935395318173362	1.01817366491437	0.935395318173362	2	-	0	0.60524179975777
116124	CTCTCCCTAGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTA|AAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTCTAACAGCCCTAGACCTCAACTACCTAACCAACAAACTTAAAATAAAATCCCCACTATGCACATTTTATTTCTCCAACATACTCGGATTCTACCCTAGCATCACACACCGCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACCTCCATCATCACCTCAACCCAAAAAGGCATAATTAAACTTTACTTCCTCTCTTTCTTCTTCCCACTCATCCTAACCCTACTCC	1	7.62160736958445e-08	0.447538936456759	0.5	N	Y	3.14012163869645	3.44252480635993	3.14012163869645	splitr	481	1	0.0579710144927537	0	Y	0.0579710144927537	N	N	24767	54817	ENSG00000198763	ENSG00000198786	+	-	MT	MT	5511	14148	coding	coding	MT-ND2	MT-ND5	4470	12337	+	+	0	5351	13795	+	-	N	0.956690203601449	-	N	SKBR3_13_2_1	4	0	3	2	2	1	Y	N	0	0	2	0.422169568379128	0.827783467410055	0.827783467410055	0.422169568379128	1	3069	-	0.60524179975777
114983	CCCCAACACTCTTAATCTTCTCCTCAGCTCTTCTGCTGAAGAATTTGGCCTTCACGATGACAGGCTGCTTTGGGAGCTTTCCCTTTCCCAGA|ACTCGGACTATCCCGATGCATACACCACATGAAATATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATAATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATGCCCC	1	1	0.947341838102727	0.917599595447558	N	N	3.24727783875992	3.40169305405954	3.24727783875992	splitr	4	1.11022302462516e-16	0	0	N	0.141304347826087	N	N	14923	0	ENSG00000166441	ENSG00000237973	-	-	11	1	8736306	567996	coding	intron	RPL27A	RP5-857K21.6	8703958	566454	+	+	1.11022302462516e-16	8707239	567773	-	-	Y	-	1	N	SKBR3_13_2_1	9	0	7.66666666666667	6	3	1	N	N	0	0	3	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
141258	TGGTGGCTGGTGGTCAACCGTCCGCCGCAGGGGGTGGCCATGAAGATGGAGTCGCCGGTGCGGGGTGGGTGCTGCGGGCGCTGCTGTTCCGATGGTGTCTTTGATGTTGGGCTGATGAGGTCTGGTTCCTCTAGCTTCACCTTCCAGAGCCGATTCCTGAGTCAGGTAGTGCAGTGGTTGTAAAGTGCAGCATATTCATTTCCAAGCTAG|AGGACACAGAGACTTCATCAAAAACATGATTACAGGGATGTCTCAGGCTGATTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGCTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCAAGAGCATGCCCTCCTGTCTTACACACTGGGTGTGAAACAACTAATTGTTGGTGTTAACAAAATGGATTCCACT	1	0.000147822677285964	0.375556752806067	0.399915574091196	N	N	3.41848849077886	3.21911343399591	3.21911343399591	splitr	3	0.0153061224489796	0.0153061224489796	0	N	0.0153061224489796	N	N	83603	0	ENSG00000130600	ENSG00000223668	-	-	11	3	2022700	39401413	intron	intron	H19	EEF1A1P24	2016406	39400036	-	+	0.0153061224489796	2017175	39400313	+	-	Y	-	1	N	SKBR3_13_2_1	15	0	13	11	2	1	N	N	0	0	2	0.653948939253943	0.827783467410055	0.827783467410055	0.653948939253943	2	-	0	0.60524179975777
22196	GAGCCAATAACCAGGGTCCTACAGACGCCTTCTCTTCGGGGGCATTTCTCGAGGTCTTGGCGACGTTGCCGCGCTGGGTGATGTTCTTGCTGTGCTTCTCGTTGGCCATACGGATCCTTTGCTTGGCGACCATCTTCGCGGCGCCACCACCTGCCCCGGCCACCCCTCGGACTCGCTCACTCGCCTGCCTCCTCTGGAGCCGCTGCGAGGCTCGGCTCGTGGTGCCCGCGCCGCCGGAGCGCCGAGGTTCTCAGGCCAGACGCTAGCTACGGCCGCTGGGCCTGGGCGCCGCAAGCGCGAGGTCTGAGCACAAGCCGGGCGCCGGCCGCCG|TACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATTACCACCCAACAATGACTAATCCAACTAACCTCAAAACAAATGATAGCCATACACAACACTAAGGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTAC	1	2.81005747871044e-21	0.311204357582937	0.306030290211129	N	N	3.27394935533424	3.00360528790293	3.00360528790293	splitr	13	0.0152905198776758	0.0152905198776758	0	N	0.0152905198776758	N	N	1713	3	ENSG00000120742	ENSG00000230021	-	-	3	1	150321015	659930	utr5p	intron	SERP1	RP5-857K21.4	150259781	536816	-	-	0.0152905198776758	150264120	569137	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.711893781972647	0.596004096535239	0.711893781972647	0.596004096535239	2	-	0	0.60524179975777
41781	CCCCCGGGCCCGCTGCGCCGCGTCGGAGCCCCAGCAGACTTTGAGAGGCGTGTGCGACAGTGCGCGTCCTCTCCTGCCTCTGGATGTTTCCTTGGAGCCTCTGGCCTTCGGGAAGACC|GTGCCACTGGGTTAGAGTCTCCCCGACCAAGCTGGTCTCAGCAAGTGGTCTCCATCATGGGGGCTCGAATCCAGGTTGAAGGGTCACCAGAGTGATGGTTGGAG	1	1	0.254583648908217	0.223418152789081	N	Y	3.46654754157187	3.62295434849776	3.46654754157187	splitr	222	1	0	0	Y	1	N	N	465	0	ENSG00000133065	ENSG00000233084	+	-	1	1	205782876	249231242	intron	upstream	SLC41A1	AL672183.2	205758221	249230780	-	+	0	205782712	205860283	+	-	N	2.56742637467033	-	N	SKBR3_13_2_1	1	0.701754385964912	1	1	0	1	N	N	0	0.701754385964912	2	0.653948939253943	0.471836576423731	0.653948939253943	0.471836576423731	1	2.5	-	0.60524179975777
113908	CATTAGTAATATCGTCGGGATTTCTGGTCCAGATGGGCTTTGTTTTGTTGAGCTCTTCTTGATCGATGTACTTTTCCTTAATCTTCTTCTTCTTCTTCTTGTCACCATCCTTCTTTTCTTCTTCCTCATCAGAA|CCACCATCATAGCCATCATCACCCTCCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACACTACTCCCTATATCTAACAACGTAAAAATAAAATGACAGTTTGAACACACAAAACCCACCCCATTCCTCCCCACACTCATCGCCCTTACCACACTGCTCCT	1	1	0.375556752806067	0.399915574091196	N	N	3.03225904853371	3.17568117582242	3.03225904853371	splitr	19	0.0597014925373133	0	0	N	0.0223880597014925	N	N	26619	0	ENSG00000080824	ENSG00000225630	-	-	14	1	102606086	566063	coding	intron	HSP90AA1	RP5-857K21.8	102547073	565020	-	+	0.0597014925373133	102551213	565855	+	-	Y	-	1	N	SKBR3_13_2_1	8	0.387096774193548	5.66666666666667	2	6	1	N	N	0.387096774193548	0	6	1.28306437448558	1.13406335035178	1.28306437448558	1.13406335035178	2	-	0	0.60524179975777
46058	CCTTAATATCAGGTAAAACCCACCCTCTCCCCTCTCCCACTGCCTTCAATATAATTGTGAAAAATAAAGATATAAATGTCATAGTGGGAAATAAGTTGACCCACCCAGTAGGCAGTCTCCTGACAGCCCAGAGTGCCTTATCTAACGCCCTTCCCTCCCCAATTTTTTTTTTTTT|TTTTTTTTTTTGAGACGGAGTCTCGATCTGTCCTCAGGCTGGAG	3	0.379034572751503	0.716823677278582	0.92722806243242	N	Y	2.67173175869916	3.27511556385332	2.67173175869916	splitr	219	0.931818181818182	0.931818181818182	0	N	0.931818181818182	N	N	2596	0	ENSG00000085117	ENSG00000230304	-	+	11	3	44641913	197953181	utr3p	downstream	CD82	CICP6	44585977	197950368	+	-	0.931818181818182	44641327	103164198	-	+	Y	-	-	N	SKBR3_13_2_1	59	0.655737704918033	32	3	4	1	N	N	0.0470588235294118	0.655737704918033	4	1.32445354785609	0.504947915120133	1.32445354785609	0.504947915120133	2	-	-	0.60524179975777
137570	ATTGATATACAGGTAGGCTCTATAGCAACAGGCCCGGAGGTGCTGCAGTAGTGGGGGAAAATGGAAGGTGGAGGGTGGAGTGTTTGCCGCAGGACAGCTGAGTGGAGGGTGGGGACAGGCGCA|GGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAACATGGG	1	0.9313482160617	0.311204357582937	0.306030290211129	N	N	3.25207246524879	3.44871903508266	3.25207246524879	splitr	4	0	0	0	N	0	N	N	0	0	ENSG00000236480	ENSG00000252318	-	+	1	2	115080461	133038738	downstream	intron	RP11-343L14.2	AC097532.1	115078616	133038647	+	-	0	115080945	133038721	-	+	Y	-	1	N	SKBR3_13_2_1	4	1	3.33333333333333	2	3	1	N	N	0	1	3	0.571170592512938	0.571170592512938	0.571170592512938	0.571170592512938	1	-	0	0.60524179975777
125315	GTGGCACTGATCGTGGCAGCAACATCTTCTCCTTCCTCAGGGACTGGGTCTGTTCTCAGCAGACCTTGCTCGCCGCGGTCCATGTCTCCAGCCCGCCGCCTCGTGTCCTCTGCAGCACCCCCGCCTGCAGCCCGTCCCGGCTCGGATCGCCCGCCGCGCCGCGCAGAGCTCCTCCTCG|CCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAA	1	1	0.447538936456759	0.5	N	N	2.96476931712543	3.53871326596283	2.96476931712543	splitr	5	0.0632911392405063	0.0632911392405063	0	N	0.0759493670886076	N	N	8580	3	ENSG00000076554	ENSG00000230021	-	-	8	1	81143467	659930	utr5p	intron	TPD52	RP5-857K21.4	80870571	536816	-	-	0	81083773	568367	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	2	-	0	0.60524179975777
74914	AATCCCAGCTACTCAGGAGGCTGAGGCACGAGAGTCGCTTGAACCCGGGAGGTGGAGGTTACAGTAAGCTGAGATCTTCCCACTGCACTCCAGCCTGAGCGACAGAGTGAGACTCCAT|CTCAAAAAAAAAAAAAAAAGTGTGACTACAGGAATGAATTAGTCCATACTG	2	0.266462410279917	0.935695919090345	0.927294411452363	N	N	3.3463227663879	2.93343115513824	2.93343115513824	splitr	0	0.529411764705882	0.529411764705882	0	N	0.529411764705882	N	N	2348	0	ENSG00000189306	ENSG00000222976	+	-	22	17	42915808	55867093	utr3p	upstream	RRP7A	7SK.180	42905974	55866810	-	+	0.529411764705882	42907204	55863336	-	-	Y	-	-	N	SKBR3_13_2_1	29	1	20	11	2	1	N	N	1	0.843137254901961	2	0.579448427187038	0.422169568379128	0.579448427187038	0.422169568379128	3	-	-	0.60524179975777
47460	GAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTATTCGTAGGTTCAGTACCATTGATGGCCAATTGATTTGATGGTAAAGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGTAGGGATGGGAGGGCGATAAGGACTAGGATGATGGCGGGCAGGATAGTTCAGACGGTTTCTATTTCCTGAGCGTCTGAGATGTTAGTATTAGTTAGTTTTGTTGTGAGTGTTAGGAAAAGGGCGTACAGGACTAGGAAGCAG|GAAGATGAAGAGGAGGAGGATGTGAAACTCTTAAGTATATCTGGAAAGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCTGTTGATGAAGATGATGATGATGATGATGATGATGATGATGATGATTTTGATGATGAGGAAGCTGAAGAAAAAGTGCCAGTGAAGAAATCTATATGAGATACTCCAGCCAAAAATGCACACAAGTCAAATCAGAATGGAAAAGACTCAAAACCATCATCAGCA	1	1.70752389235212e-08	0.254583648908217	0.223418152789081	N	N	3.37548038812845	3.25822684117816	3.25822684117816	splitr	0	0	0	0	N	0	N	N	3	0	ENSG00000230021	ENSG00000225159	-	-	1	1	659930	27534287	intron	intron	RP5-857K21.4	RP11-40H20.2	536816	27533421	-	+	0	568238	27533796	-	-	N	0.828962371721779	1	Y	SKBR3_13_2_1	34	0.237410071942446	23.5	14	4	1	N	N	0	0.237410071942446	4	1.24167520111508	1.15061901969998	1.24167520111508	1.15061901969998	2	0	0	0.60524179975777
138996	AGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAA|AAGATCGATCGCCACACGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAGACAAGCGGATT	1	0.00378172595974837	0.526775457519482	0.600084425908804	N	N	3.56402084320003	3.83593234673454	3.56402084320003	splitr	14	0.166666666666667	0.166666666666667	0	N	0.347222222222222	N	N	108743	0	ENSG00000156508	ENSG00000218227	+	-	6	5	74233520	177483195	coding	intron	EEF1A1	RP11-889L3.1	74225473	177482605	-	+	0.166666666666667	74227886	177482944	-	-	Y	-	1	N	SKBR3_13_2_1	72	0	57	42	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	0	0.60524179975777
71302	GAGTTAGGGTCTCCATCCAGGGGGTCTGGGCAGGTGTCCTTTTGGAGTGGGTCCGCAGCTGCCCCCAAGTCTGTGCTGCTCCATTTCTTCATCCTTGCTGGATCCTCTGTGGCCCAGTGTGCAACCTG|AACAGAAGCACTGTGATACCAGGACGGGCGATCTGACGACTAAGTGACTGACCGGCGGGGAGCATCTACGGCCTGGACGTGGGGAACACAGGGACGGTTTGCATCCCAGATGGCACGGCAGAGACTCTCCATCACACTGCTCA	1	1	0.375556752806067	0.399915574091196	Y	Y	3.46973068926756	3.61041498203738	3.46973068926756	splitr	271	1	0	0	Y	0.734375	N	N	44	719	ENSG00000196689	ENSG00000197417	-	-	17	17	3500392	3539616	utr5p	downstream	TRPV1	SHPK	3468743	3511893	-	-	0	3495680	3511724	+	-	N	-	-	N	SKBR3_13_2_1	1	1	1	1	0	1	N	Y	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
139851	CATAGATTTTCTTGTTCCATGCAAAAAAGTTAGTGAATAGAACTTCCCGGTCTTTAGCTGGTTAACACGTCCACCTCAGACACTGAGTGCCACAGGCCTTCACTTGTGAACATCATTTGGCATTTCTGACTCTCCTGAGTTCTGGCTCAGCAGGACCTCACCACGGAATGTGCTACTGCAAACAACCCCACAGCCATCACGCCTGATGAGTACTTCAATGAAGAGTTTGAT|CCAGGTTCTGCCCTCGCAGCACCGCGTACGGCCGGCTCCGCTCCAGCGGATCCACGGGGCTCGGGGCCTCTGCCTCCCCCACCAGGAGGCTGCAGAGGCCAAGGTACAGCCACGGTAACGCTGGACGCAGCATCTTCCCCAGCCCTGCAGAAGCAGAGAGGCCACTTCCGTCGCA	1	0.339707770255434	0.375556752806067	0.399915574091196	Y	Y	3.70463477795295	3.41529599551336	3.41529599551336	splitr	406	1	0	0	Y	1	N	N	804	16	ENSG00000076513	ENSG00000174456	+	-	12	12	110477231	110505500	coding	intron	ANKRD13A	C12orf76	110437235	110478983	+	-	0	110466394	110486168	+	-	N	1.14194071065198	2.24707716289945	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	4	1.34928705187839	1.18373035839638	1.34928705187839	1.18373035839638	4	11.5	0	0.60524179975777
130418	AGTTGTGAGATCCGCTACCTCCACGTTTGTCCTCGTGCTTCAGGCCACTGTAATGTGAAAAAGAAGATCTAT|CACTTCCACTATGTCCTATCAATAGGAGCTGTATTTGCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACCCTAGACCAAACCTACGCCAAAATCCATTTCGCTATCATATTCATCGGCGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTC	1	1	0.12875022366714	0.0640797573534845	N	N	3.71873223294673	3.70719543103269	3.70719543103269	splitr	23	0	0	0	N	0.0416666666666665	Y	N	6574	0	ENSG00000142864	ENSG00000237973	-	-	1	1	67896098	567996	coding	intron	SERBP1	RP5-857K21.6	67873493	566454	-	+	0	67890772	567580	+	-	N	-	1	N	SKBR3_13_2_1	6	0	6	6	3	1	N	N	0	0	3	0.579448427187038	1.24167520111508	1.24167520111508	0.579448427187038	2	-	0	0.60524179975777
141754	CTCTCGTGTCTCTTCACCCTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGATTCCGCCAAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGTGCGTCACTAATTAGATGACAAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGTGCT|TCAGTGACATTTCCCTGCAGGATTACATTGCAGTGAAGGAGAAATATGCCAAGTACCTACCTCACAGTGCAGGGTGGTATGCCGCCAAATGCTTCCACAAAGCTCAGTGTCCCATTGTGGAGCGCCTTACTAACTCCATGATGATGCACGGCTGCAACAACGGCAAGAAGCTCATGACTGTGTGCATCGTCAAGCATGCCTTCGAGGTCATACACCTGCTCACAGGCGAGAACCCTCTGCAGGTCCTGGTGAACGCCATCATCAACAGTGGTCCCCGGGAGGACTCCACACGCATT	1	8.09336809174228e-08	0.163783040919641	0.102428735043176	N	N	3.57063922744582	3.60103760561896	3.57063922744582	splitr	3	0	0	0.5	N	0	N	N	356	0	ENSG00000149262	ENSG00000233558	-	+	11	6	77705724	116580278	intron	intron	INTS4	RP3-486I3.4	77589766	116579656	-	-	0	77597555	116580190	-	+	Y	1.69881089015784	1	N	SKBR3_13_2_1	20	1	14	8	2	1	N	N	1	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	0	7.5	0	0.60524179975777
28956	GCTCCCCCAGCCTCAGTGGACTGGAGGGTGGTCCTGCCATTGCCCAGAAATCAGCCCCAGCCCCGGTGAGCCCCCATCCTGCCCCTGCCCACCAGGTACTGGGGGCCTGTGGCAGCAAGATAGGGGGAGAGAGACCCAGAGATGTGAGAGAGAGTCAGAGACAGAGACAGAGAGAG|AGAGAGAGAGACAGAGAGAGACAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGACAGAGAGAGAGAGACAGAGAGAGAGACAGAGAGACAGAGAGACACAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGACAGAGAGAGAGACAGAGAGAGACAGAGA	7	1	0.642131828176126	0.904419154757147	N	N	2.32620516130736	1.6188216212832	1.6188216212832	splitr	87	0.227272727272727	0.0625000000000001	1	N	0.0625000000000001	N	N	2367	9	ENSG00000065054	ENSG00000234210	+	+	16	7	2089026	157292410	utr3p	upstream	SLC9A3R2	AC006372.4	2076888	157258925	+	+	0.238636363636364	2088230	157254243	+	+	Y	-	-	N	SKBR3_13_2_1	4	1	2.66666666666667	2	3	1	N	N	0.21195652173913	1	3	1.24167520111508	0.836061302084155	1.24167520111508	0.836061302084155	2	-	-	0.60524179975777
124657	CCCGGCCAGCCTTCAAGATGGGTTTGTCAATTCGGCCACCTCCAGCCACCACACCTCCATCACCTAGAATGCTGGCTGAGCTCCAAGCGCAGGGAAGCACCCCCCTCACCATGTGTGAGACGTCAGGCCGGCCACTCAACCAACCACAGCTCTGTTGGCTGAGGAGATAACCTTCTTGGAGCCGGAGGGCAGCTTCACACGGGTCTTCTTGGTCTCAGGGTTGTGGGAGATAACGGTGGCATAGTTCCCTGATGCCCGGGCCAGCTTGCCACGGTCTCCAGGCTTCTCCTCCAGGCAGCACACGATTGTA|CACCATCACAGCCACCACCATCCGCACCATCACCCTCAGCAGCAGCAGCAGCAGCCGCACCACCACCACCATTATTATTTCTACAACCACAGCCACAACCACCACCACCACCATCATCACCAGCAGCCTCACCAATACCTGCAGCATGGAGCCGAGGGCAGCCCCAAGGCCCAGCCAAAGCCGCTGAAACATGAGCAGAAACACACCCTCCAGCAGCACCAGGAAACGCC	1	5.98716216961931e-08	0.447538936456759	0.5	N	N	3.72146071989581	2.77232056535123	2.77232056535123	splitr	1	0.0043478260869565	0.0043478260869565	0	N	0.0043478260869565	N	N	18822	4573	ENSG00000161016	ENSG00000108256	-	+	8	17	146017972	27621166	coding	coding	RPL8	NUFIP2	146015150	27582855	-	-	0.0043478260869565	146016831	27621044	+	+	Y	-	1.05880130208734	N	SKBR3_13_2_1	1	0.27027027027027	1	1	0	1	N	N	0	0.27027027027027	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	53	0.60524179975777
113684	GGTCCTCGGGATCCTCCTGGAATCTCTTCCTCAGCATCTGGCTCATGATAAGGTTTCAGGTGTCTTGATGGTATCCAAATTGGCTGTTGATTTTGGCCTGGAGAAACACAAGCATAACCT|CACGGGGTTTGCTTTAAGAGTACTCAGGTGTCCTCCAGCTAGTTCCATGTTCTCCAACCATCACTCTGGTGACCCTTCAACCTGGATTCGAGCCCCCATGATGGAGACCACTTGCTGAGACCAGCTTGGTCGGGGAGACTCTAACCCAGTGGCACTAGAG	1	1	0.12875022366714	0.0640797573534845	N	Y	3.58746516938868	3.58999531724489	3.58746516938868	splitr	280	0.966666666666667	0.558333333333333	0	N	0.558333333333333	N	N	0	0	ENSG00000101292	ENSG00000233084	-	+	20	1	5297378	249231242	intron	upstream	PROKR2	AL672183.2	5282317	249230780	-	+	0.591666666666667	5287629	205860437	-	+	Y	1	-	N	SKBR3_13_2_1	24	1	19.5	15	2	1	N	N	1	0.707317073170732	2	0.75328295534315	0.827783467410055	0.827783467410055	0.75328295534315	4	0	-	0.60524179975777
112612	TAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACCCGATCGGCATAGCGCACTACAGCCCAGAACTCCTGGGCTCAAGCGATCCTCCCACCTCAGCCTCCCGAGTAGCTGGGACTACAGGCA|CGCGCTCCTCCTCGCCCGCCGCTAGGTCCATCCCGGCCCAGCCACCATGTCCATCCACTTCAGCTCCCCGGTATTCACCTCGCGCTCAG	1	0.715870716530371	0.526775457519482	0.600084425908804	N	N	3.353603498043	2.97420012670633	2.97420012670633	splitr	67	0.0561797752808989	0	0	N	0.146067415730337	N	N	0	34840	ENSG00000253128	ENSG00000135480	+	-	14	12	107281252	52662180	downstream	utr5p	IGHV4-80	KRT7	107281000	52626954	-	+	0.0561797752808989	50329549	52627035	+	-	Y	-	0.00897842599461157	N	SKBR3_13_2_1	13	0.96629213483146	8	3	2	1	N	N	0.96629213483146	0	2	0.827783467410055	0.480114411097832	0.827783467410055	0.480114411097832	1	-	20.5	0.60524179975777
79031	AGGTGCCACGATGCGGTGAGCGATGTCAGACAGCTCCTTCTTCTGCTCCGGGGTCAGTGCTGGATATTGGTAGGGCATGGTGCTGGTAGTAGCAAGTTCCTGGCACAGGAGAGGGGCGGGTGTG|CAGGCGGCGGCGCAGGCGGCGGCGGCGGCATAGCGCACAGCGCGCCTTAGCAGCAGCAGCAGCAGCAGCGGCATCGGAGGTACCCCCGCCGTCGCAGCCCCCGCGCTGGTGCAGCCACC	1	0.82338431127197	0.612610548302747	0.693969709788871	N	N	3.45297510534159	2.5760845706713	2.5760845706713	splitr	22	0.159663865546218	0.159663865546218	0	N	0.210084033613445	N	N	37145	9025	ENSG00000149925	ENSG00000198668	-	-	16	14	30081741	90874617	utr5p	utr5p	ALDOA	CALM1	30064444	90863327	+	+	0.159663865546218	30077224	90863420	-	-	Y	-	1.25007412445039	N	SKBR3_13_2_1	1	0.223214285714286	1	1	0	1	N	N	0	0.223214285714286	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	419.5	0.60524179975777
62307	TTCCTTCCTCGTTGGGGGATTAGGGCGAGGGAAGGTGGGGAGGGGGGAGAGGGGACGAATCAAGGTGGGTTTCAGTTTTCCCACCTCAAAAAAGGAAATTAAAAAAACGGACAGGAAAAGGGCAAAAAGAGCTCAATAATATTTACTATTTCAGGGACGCTTCCCCCAACACACACACACACACAC|ACACACACACACACACACACACACACCAAGTACCAGTATAAGCATCTGCCAT	20	0.764937316172662	0.854833882126452	0.959244310749868	N	N	2.88591066057517	2.27615028758593	2.27615028758593	splitr	32	0.269230769230769	0.269230769230769	0	N	0.5	N	N	3680	1	ENSG00000082898	ENSG00000241476	-	-	2	X	61765761	52736239	utr5p	utr3p	XPO1	SSX2	61704984	52725946	-	-	0.269230769230769	61764905	52726123	+	+	Y	-	-	N	SKBR3_13_2_1	17	0.98	10	3	2	1	N	N	0	0.98	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	3	-	-	0.60524179975777
140747	TCCGGTCATCGTCGCCTTCTCGTATGAATTCTGTTGGCGGGTGCTGGAAGGCCGGGCTATGGAAGTGGATGTCCATGGCCTGCTGAGCCTCGTGTATCATCTCAAGGAAGGGCTGGAACATGGCGTGGAAGTTCAGGGGCTCGTACGGAGAGAAGGGCATCAAGCTGCGGACGATGCGGGACTTGGGAAAGAAGAAGTGAGGCCTCCGGTGGGGCAGGCTG|AAGGGCAGGCACGTGGCCATAGGTGAGCAGAAGGGTACAGCCAATGCCCGAATGCCAGAGAAGGTCACATGGATGAGGAGAATGACGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACACGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAGACAAGCGGATTCTCATGGAACACATCCACAAGCTG	1	1.02418523118528e-05	0.800133926999915	0.844771979185218	N	N	3.30488209984069	3.33164690237084	3.30488209984069	splitr	10	0.00452488687782793	0.0361990950226245	0	N	0.0361990950226245	N	N	8126	0	ENSG00000120885	ENSG00000218227	-	-	8	5	27472548	177483195	coding	intron	CLU	RP11-889L3.1	27454434	177482605	-	+	0.00452488687782793	27462643	177482818	+	-	Y	-	1	N	SKBR3_13_2_1	7	0	4.5	2	2	1	N	N	0	0	2	0.513225749794234	0.827783467410055	0.827783467410055	0.513225749794234	1	-	0	0.60524179975777
127331	TCTAGATATCGACTTGTTTTTGCACATGTTTCCTCTAGTTCTTTGTTCATAGCCCAGTAGACCTTGTTACTTCTGAGGTAAGTTAAGTAAGTTGATTCGGTATCCCCCCATCTTGCTTCCCTAATCTATGGTCGGGAGACAGCATCAGGGTTAAGAAGAC|TTTTTTTTTTTTTTTAAACCAAAGTTAGAGACATTGGAAAGCAG	6	0.807749815542825	0.307199615518583	0.689729940015595	N	N	3.62617734898681	2.67904299557779	2.67904299557779	splitr	23	0.5	0.5	0	N	0.522727272727273	N	N	6790	135	ENSG00000115884	ENSG00000135093	-	+	2	12	20425194	109525831	utr3p	intron	SDC1	USP30	20400558	109460894	-	+	0.5	20401876	109499213	-	+	Y	1.00416296299418	0.728302284753869	N	SKBR3_13_2_1	61	0.566037735849057	30.3333333333333	7	3	1	N	N	0	0.566037735849057	3	0.844339136758256	0.438725237727329	0.844339136758256	0.438725237727329	2	102	3.33333333333333	0.60524179975777
124822	GGGCGCGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCATAGCAGGTGGATCGCTTGATTCCAAGAGTTTGAGACCAACCCGGGTGACATGGCGAAATCCTGTCT|ATTTCTGGAGGCTGACGTCCAAGATTAAGATGTCATCAGGGTTGGTTTCTGCTTTTCATTTTTGAAACGGAGTCTTGCTCTGCTACCTAGGCTGGAGTGCAGTGGCACCATCTTGGTTGCACTGCAACCTCCACCTCCCAGATTCAAGCAATTCTCGTGCCTCAGCTTCCAGAGTAGCCCCAGGTTCAAGCAATTCT	1	0.816249229079358	1	0.935920242646516	N	Y	3.55703628599201	3.75847748231474	3.55703628599201	splitr	308	0	0	0	Y	0	N	N	0	0	ENSG00000090661	ENSG00000213753	+	-	19	19	8327305	59111168	intron	upstream	LASS4	AC016629.2	8274228	59084870	+	+	0	8298729	8358690	+	-	N	1	-	N	SKBR3_13_2_1	46	1	24	2	2	2	N	N	1	0.993464052287582	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	4	0	-	0.60524179975777
109074	ACTAACATTAACGAAAATAACCCCACCCTACTAAACCCCATTAAACGCCTGGCAGCCGGAAGCCTATTCGCAGGATTTCTCATTACTAACAACATTTCCCCCGCATCCCCCTTCCAAACAACAATCCCCCTCTACCTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTCTAACAGCCCTAGACCTCAACTACCTAACCAACAAACTTAAAATAAAATCCCCACTATGCACATTTTATTTCTCCAACATACTCGGATTCTACCCTAGCATCACACACCGCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACT|CCTCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTGTCTCCTCTATCTTAGGGGCCATCAATTTCATCACAACAATTATCAATATAAAACCCCCTGCCATAACCCAATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAGCTGCTGGCAT	2	4.54671347682596e-14	0.572228613671423	0.790699370883283	N	N	3.45868840089349	3.57952209032428	3.45868840089349	splitr	22	0.0816326530612244	0.0816326530612244	0	N	0.0816326530612244	Y	N	54817	121749	ENSG00000198786	ENSG00000198804	+	-	MT	MT	14148	7445	coding	coding	MT-ND5	MT-CO1	12337	5904	+	+	0.0816326530612244	13988	6325	+	-	N	-	-	N	SKBR3_13_2_1	6	0	3	1	3	3	Y	N	0	0	4	0.935395318173362	0.811227798061854	0.935395318173362	0.811227798061854	2	-	-	0.60524179975777
68086	CAATTTTTTCATATTCCGGAGCAAACTGCTTGCAATGTCCACACCATGGAGCATAAAACTCCAGCAGCACTGTGTCTTTGTCAGCCACAAAATTATCAAAGTTTGCATCATTTAGGACCAAGACTCCATTTTCTTCCTTAACTTCCAAGTCGTCTTCTTCCTCA|TCATCCTAACCCTACTCCTAATCACATAATCTATTCCCCCGAGCAATCTCTAGTACAATATACACACCAACAAACAATGTTCAACCAGTAACTACTACTAATC	2	1	1	0.97388564551795	N	N	3.08717467545874	2.92465334539683	2.92465334539683	splitr	17	0.0485436893203883	0.0485436893203883	0	N	0.0485436893203883	N	N	2316	31	ENSG00000155660	ENSG00000132570	-	+	7	5	148725733	134343649	coding	intron	PDIA4	PCBD2	148700154	134240596	-	+	0.0485436893203883	148718178	134260366	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.538059253816536	0.827783467410055	0.827783467410055	0.538059253816536	2	-	1	0.60524179975777
140585	GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATCCTGATACCAAAGC|CTGTGCGGGTCGCCTCGCCGCTAGGCCCCAAGACGGCGCCGCCTGCTCGGCAGCAAAGCCCACCCGCCCCGTCGGCGGCTCAGTGCTGCACCC	1	1	0.254583648908217	0.223418152789081	N	Y	3.57233464462502	3.36613351693357	3.36613351693357	splitr	237	0.967741935483871	0.032258064516129	0	N	0.967741935483871	N	N	361	410	ENSG00000249348	ENSG00000102710	+	+	4	13	39596327	37633850	intron	utr5p	RP11-814P23.1	FAM48A	39529639	37583449	+	-	0.0752688172043011	39594701	37633696	+	-	Y	-	-	N	SKBR3_13_2_1	18	1	13	8	2	1	N	N	1	0	2	0.827783467410055	0.769838624691351	0.827783467410055	0.769838624691351	3	-	-	0.60524179975777
140442	CCTAAGATTTTGAGTTAACATCTCTTGAAGCCAAACTCCACCTTCTGTGCTTTTTGCTTGGGATAATGGAGTTTTTCTTTAGAAACAGTGCCAAGAATGACAAGATATTAAAAAAAAAAAAGAAAG|AAAAAAAAAAAAACACCCAGTGGGGTCAGTAGAACCCCAAG	2	0.243858874151779	0.109686129994209	0.10275139395098	N	N	2.84190934094821	2.70621837326189	2.70621837326189	splitr	34	0.414634146341463	0.414634146341463	0	N	0.414634146341463	N	N	7764	95	ENSG00000139644	ENSG00000221968	+	-	12	11	50158717	61659523	utr3p	intron	TMBIM6	FADS3	50135293	61640991	+	-	0.414634146341463	50158510	61649583	+	+	Y	-	-	N	SKBR3_13_2_1	52	0.94	30	8	2	1	N	N	0	0.94	2	0.76156079001725	0.413891733705027	0.76156079001725	0.413891733705027	2	-	-	0.60524179975777
134917	AGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACT|AAAAAAAAAAAGAGGCCCCCGAGATGCAGAGAGTTGTTCACTGGAAG	6	0.39458688162905	0.0572513612414578	0.101495070617596	N	N	3.23999710710482	3.03599525770234	3.03599525770234	splitr	12	0.25531914893617	0.25531914893617	0	N	0.51063829787234	N	N	14698	0	ENSG00000187514	ENSG00000255658	+	-	2	11	232578251	130628495	utr3p	intron	PTMA	AP003486.1	232571605	130434325	+	-	0.25531914893617	232577586	130483004	+	-	Y	-	1	N	SKBR3_13_2_1	28	1	23	18	2	1	N	N	0.0340136054421769	1	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	2	-	0	0.60524179975777
136332	GAGCGGGGGCGCGGGTGGCGCGGCGGGACGCGAGCGGCGAGCCGGAGCGCGGAGCCCGGCTCCCGCACCATGGAGGAGGACGACAGCTACG|GTGGTATTAAAGATAATCAAACATTATCAAGAAGAAGGACAAGGAACTGAAGTTGTTCAAGGAGTGCTTTTGGGTCTGGTTGTAGAAGATCGGCTTGAAATTACCAACTGCTTTCCTTTCCCTCAGCACACAGAGGATGATGCTGACTTTGATGAAGTCCAATATCAGATGGAAATGATGCG	1	1	0.899266171301115	0.897571427984624	N	N	3.39590940049075	3.32527125940964	3.32527125940964	splitr	3	0	0.0109890109890108	0	N	0.0109890109890108	N	Y	554	11199	ENSG00000108669	ENSG00000147677	+	-	17	8	76778379	117779164	coding	coding	CYTH1	EIF3H	76670130	117654369	-	-	0	76778284	117738411	-	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	3	N	N	0	0	11	0.836061302084155	1.33273138253019	1.33273138253019	0.836061302084155	4	-	-	0.60524179975777
75041	AGAAGGTCTGGTTAGACCCCAATGAGACCAATGAAATCGCCAATGCCAACTCCCGTCAGCAGATCCGGAAGCTCATCAAAGATGGGCTGATCATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAGCGGAAGGGTACAGCCAATGCCCGAATGCCAGAGAAGGTCACA|CACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGCTACTGGCAG	1	0.545923654950605	0.20555784636729	0.155228020814782	N	N	3.50848272165904	3.45078517462244	3.45078517462244	splitr	0	0	0	0	N	0.126760563380282	N	N	129759	0	ENSG00000108298	ENSG00000212932	+	+	17	21	37360980	48111157	coding	upstream	RPL19	RPL23AP4	37356536	48110676	+	+	0	37359288	9827159	+	+	Y	-	-	N	SKBR3_13_2_1	2	1	2	2	2	2	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
141674	TTCAGAGCACACCTCTCGAACCACCTCTTCCACAGACTCTGTGGTGGTGGTGGTGGTGGTGGCAATGCTGGTGGTTCTCTCTGTGGCTTCTTCGTAGGGTTCCTCAGCCTCTTCCTCTACCTCATCACCATCCTCATCGTCCTCGTCATCATCGGCTTCTTCTTCTTCCACC|TCATCATCATCATCATCTTCCTCAGCAGCAAGTTTTACTTTTTTCTGTGGAACCTTGCTACCACCTCCAGGGGCAGACTGCTTTCCAGTTATACTTAAGAGTTTCACATCCTCCT	1	1	0.704121951840997	0.776581847210919	N	N	3.08467951845641	3.12117612405133	3.08467951845641	splitr	50	0	0.0956521739130435	0	N	0.0956521739130435	N	N	8411	0	ENSG00000142192	ENSG00000138315	-	-	21	10	27543446	74692791	coding	intron	APP	OIT3	27252861	74653339	-	+	0	27394313	74677791	+	-	Y	-	1	N	SKBR3_13_2_1	20	0.307692307692308	12.25	9	4	1	N	N	0.307692307692308	0	4	0.918839648825161	0.720171616646748	0.918839648825161	0.720171616646748	0	-	0	0.60524179975777
132389	AAGGGGGCTGGGGCCGAACATCTGGCTGGTTCACATATTCAGGCTGGGGGCTGCAGGTCAGGGGGGCAACGTAGCCATCAGTCTCAGAGGGCAGGGGTACTGTGGGGTCCTCACTGTACCGCTGTAGAGGGCTGGGGTCATGTGTGGGGAGGCTTTGCAGCCCCTTGGCT|GCCCCCATCACCTCAGGCTTCTCAGTTCCCTTAGCCGTCTTACTCAACTGCCCCTTTCCTCTCCCTCAGAATTTGTGTTTGCTGCCTCTAT	1	0.882828173661898	0.899266171301115	0.897571427984624	N	N	3.11807691474166	3.26360926716282	3.11807691474166	splitr	8	0.0879120879120879	0.0879120879120879	0	N	0.0879120879120879	N	N	74211	24435	ENSG00000141736	ENSG00000196230	-	-	17	6	37884915	30693203	coding	utr3p	ERBB2	TUBB	37844393	30687978	+	+	0.0879120879120879	37883670	30692181	-	-	Y	-	1.73186629654961	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.827783467410055	0.695338112624446	0.827783467410055	0.695338112624446	1	-	1218.5	0.60524179975777
137700	CGAAACTCCCTCATAATCACGTCTCGTTCCTTTTGGTCCATATCTCCATGCATGGCGGATACAGTGAAATCTCGAGCATGCATCTTCTCGGTGAGCCAGTCCACCTTCCTCCGGGTG|TTGATGCCATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCACGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTTGTCATCT	1	1	0.800133926999915	0.844771979185218	N	N	3.57592836747465	3.30847582269032	3.30847582269032	splitr	12	0.0512820512820512	0.0256410256410257	0	N	0.0598290598290598	N	N	9780	356	ENSG00000161960	ENSG00000149262	-	-	17	11	7482324	77705724	coding	intron	EIF4A1	INTS4	7476024	77589766	+	-	0.0512820512820512	7480958	77597497	-	-	Y	-	1.69881089015784	N	SKBR3_13_2_1	9	1	6.75	3	4	1	N	N	0	1	4	0.645671104579843	0.629115435231642	0.645671104579843	0.629115435231642	2	-	3.75	0.60524179975777
139961	TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA|ATATACTGGAGAATCATGCAATGCTGCCAGCACTGGACGCAATCCAGGGCCACAAGTCTGCACACTCCTTTGCTACTGGTCCTGTAATGGCAGAACCTTTCATCTCGCCTTTATTGTTCACTGTGACCCCTGCATTATCTTCAAAATAAAGAAACACGCCATCTTTTCTGCGGTATGACTTTCGTTGTCGAATAACCACTGCTGGATGTACCTTTTTTCTGAGCTCTGGTTTGCCTTTCTTGACTGTGGCC	1	1	1	0.935920242646516	N	Y	0.776482662581515	3.61633596425197	0.776482662581515	splitr	298	0.25531914893617	0.851063829787234	0	N	0.851063829787234	N	N	430	0	ENSG00000163785	ENSG00000180211	-	-	3	6	133969689	39926572	utr3p	downstream	RYK	RP1-278E11.3	133794023	39926153	-	-	0.446808510638298	133875979	39926137	+	-	Y	-	-	N	SKBR3_13_2_1	516	0	306	96	2	1	N	N	0	0	2	0.422169568379128	0.827783467410055	0.827783467410055	0.422169568379128	1	-	-	0.60524179975777
125648	GAAACCTTTATTAACATTTTGAACAGGTTCAGCTATTACTGAAACTTGTAATTTCTAAACTTAAGTTGGGGCAAATGGCTATAGTGCAGAGTAATGCCATCACTGGGCACTGCGAATGCCATGACTGAAGAATTAACAGCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCA|CTGGGCTCTTCCCTGTTCACTCGCCATTACTGAGGGAATCCTGGTTAGTTTCTTTTCCTCCGCTGACAAATATGCTTAAATTCAGCGGGTCGCCACGTCTGATCTGAGGTCGCGGGCCTCGATCAGAAGGACTTGGGCCCCACACGAGCGGCGCCGGGGAGTGGGTCTTCCGTA	1	3.9236044063687e-07	0.899266171301115	0.897571427984624	N	N	3.44040523365767	3.58064844605001	3.44040523365767	splitr	8	0.0459770114942529	0.0459770114942529	0	N	0.0459770114942529	N	N	7494	0	ENSG00000170315	ENSG00000141161	-	-	17	17	16286054	33516364	coding	intron	UBB	UNC45B	16284113	33474836	+	+	0.0459770114942529	16285737	33478162	-	-	N	0.835065572653519	1	Y	SKBR3_13_2_1	4	0.504132231404959	2.5	1	1	1	N	N	0	0.504132231404959	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	792.5	0	0.60524179975777
49958	GTTAATGGTTGATATTGCTAGGGTGGCGCTTCCAATTAGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGGTTAGGCGTACGGCCAGGGCTATTGGTTGAATGAGTAGGCTGATGGTTTCGATAATAACTAGTATGGG|GGTCAGGGGTTGAGGTCTTGGTGAGTGTTTTAGTGGGGTTAGCGATGGAGGTAGGATTGGTGCTGTGGGTGAAAGAGTATGATGGGGTGGTGGTTGTGGTAAACTTTAATAGTGTAGGAAG	1	0.73501644712757	1	0.935920242646516	N	N	3.46977054206092	2.85650549937857	2.85650549937857	splitr	15	0.0661157024793388	0.0661157024793388	0	N	0.421487603305785	Y	N	38194	19641	ENSG00000198899	ENSG00000198695	-	-	MT	MT	9207	14673	coding	coding	MT-ATP6	MT-ND6	8527	14149	+	-	0.0661157024793388	8941	14426	-	+	N	-	-	N	SKBR3_13_2_1	6	0	3	2	6	2	N	N	0	0	6	1.20856386241868	1.13406335035178	1.20856386241868	1.13406335035178	2	-	-	0.60524179975777
44824	TGCCCGGCAGATGGGGTCCTCACCTGCCCGCTGCTGCCAGCTACACCTCCGTTGCCCAGGCCCTG|ACTCCCCTCAGCCATAGAAGGCCCCACCCCTGTCTCAGCCCTACTCCACTCAAGCACTATAGTTGTAGCAGGAGTCTTCCTACTCATCCGCTTCCACCCCCTAGCAGAGAATAACCCACTAATCCAAACTCTCAC	1	0.365388206053006	0.526775457519482	0.600084425908804	N	N	3.1986844216336	3.26973313786865	3.1986844216336	splitr	14	0.0769230769230768	0	0	N	2.22044604925031e-16	N	N	83603	31	ENSG00000130600	ENSG00000132570	-	+	11	5	2022700	134343649	intron	intron	H19	PCBD2	2016406	134240596	-	+	0.0769230769230768	2018695	134261454	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	2	0	2	2	3	4	N	N	0	0	3	1.03472933426257	0.76156079001725	1.03472933426257	0.76156079001725	2	-	0.666666666666667	0.60524179975777
79507	GATGGACGCCTCCTCCTCACTCTGGCCTCCAGACAGGAAGGTGATCCCAGTGACAGCGGGGGGCACTGTGCGGCGCAGCGCTGTGACGGTCGCCATGGCAATCTCCTCATGAGAAAACTTCTGAGTGCAAGCATGGCCTGG|ATTATGCAAAGAAAAATGAACCCAAACATAGACTTGCAAGACATGGCCTGTATGAGAAGAAAAAGACCTCAAGAAAGCAACGAAAGGAACGCAAGAACAGAATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAAGCCGAAGG	2	0.631196310349899	0.109685700156833	0.10275139395098	N	N	3.58593758607883	3.15831667764963	3.15831667764963	splitr	5	0.00709219858156029	0.0354609929078015	0	N	0.134751773049645	N	N	37145	25185	ENSG00000149925	ENSG00000138326	-	-	16	10	30081741	79816570	coding	coding	ALDOA	RPS24	30064444	79793518	+	+	0.00709219858156029	30080901	79795438	-	-	Y	-	-	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
137952	GTTTCACAGATCGTTGTTAGATCTTTATTTTTAGCCATGCACTGTTGTGAGGAAAAATTACCTGTCTTGACTGCCATGTGTTCATCATCTTAAGTATTGTAAGCTGCTATGTATGGATTTAAACCGTAATCATATCTTTTTCCTATCTATCTGAGGCACTGGTGGAATAAAAAACCTGTATATTTTACTTTGTTGCAGATAGTCTTGCCGCATCTTGGCAAGTTGCAGAGATGGTGGAGCTAG|AAAAAAAAAAAAAGCTATAGTCAAAACTGTGTCT	1	0.994736992181408	0.254583648908217	0.223418152789081	N	Y	3.68018788721795	2.71649915451494	2.71649915451494	splitr	13	0.382352941176471	0.382352941176471	0	N	0.441176470588236	N	N	1476	0	ENSG00000115310	ENSG00000249881	+	+	2	5	55339757	143208337	utr3p	intron	RTN4	CTB-57H20.1	55199325	142985193	-	+	0.382352941176471	55199948	143129768	-	+	Y	-	1	N	SKBR3_13_2_1	98	0.403846153846154	55	12	2	1	N	N	0	0.403846153846154	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	2	-	0	0.60524179975777
75629	CTCCTCATCTTCCTCCTTGTCCTCCTCATCCTCCTCATCCTCATCTTTGTCCTCATCATCCTCCTTGTCCTCTGCCTCCTCCTCCTCTTTGCGTTTCTTGTCTTCTTCCTCCTCCTTAAGCCTCTGCTCCTCGTCCTGTTTGT|CCTCCTCAGCCTCCTGCCCACCCAGGGCCCTTTACTCTCTTCTCCCTCCAGACCTTCCTCTGACCCTTGCTGAACTGGGGTCCCTTTGTGAGTGTCTCAGTC	2	1	0.14642513198438	0.165868294288181	N	N	2.98824414853762	2.8444301412346	2.8444301412346	splitr	3	0.0294117647058825	0.0294117647058825	0	N	0.0294117647058825	N	N	9938	16903	ENSG00000179218	ENSG00000188643	-	+	19	1	13055304	153585644	coding	utr3p	CALR	S100A16	13049414	153579362	+	-	0.0294117647058825	13054549	153579943	-	+	Y	-	1.75791248031855	N	SKBR3_13_2_1	1	0.885416666666667	1	1	0	1	N	N	0.885416666666667	0	2	0.794672128713653	0.827783467410055	0.827783467410055	0.794672128713653	2	-	1179	0.60524179975777
138913	GACAAGCAGCCTGTCAAGGTGCTTGTTGGGAAGAACTTTGAAGACGTGGCTTTTGATGAGAAAAAAAACGTCTTTGTGGAGTTCTATGCCCCATGGTGTGGTCACTGCAAACAGTTGGCTCCCATTTGGGATAAACTGGGAGAGACGTACAAGGACCATGAGAACATCGTCATCGCCAAGATGGACTCGACTGCCAACGAGGTGGAGG|TGCAGGTCCTGGTGCTTGATGGTCGAGGCCATCTCCTGGGCCGCCTGGCGGCCATCGTGGCTAAACAGGTACTGCTGGGCCGGAAGGTGGTGGTTGTACGCTGTGAAGGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACCAACCCTTCCCGAGTCCCCTACCACTTCCGGGCCCCCAGCCGCATCTTCTGGCGGACCGTGCGAGGTATGCTGCCCCACAAGACCAAGCGAGGCCAGGCCGCTCTGGACCGTCTCAAGGTGTTTGACGGCATCCCACCGCCCTACGACAAGAAAA	1	3.04625596778051e-10	0.375556752806067	0.399915574091196	N	N	3.74337746277462	3.47336426491055	3.47336426491055	splitr	5	0.0240384615384616	0.00961538461538458	0	N	0.0673076923076924	N	N	25020	0	ENSG00000185624	ENSG00000236552	+	-	17	10	79818545	98510675	coding	intron	P4HB	RPL13AP5	79801037	98510045	-	+	0.0240384615384616	79803496	98510055	-	-	Y	-	1	N	SKBR3_13_2_1	7	0	5	3	2	1	N	N	0	0	2	0.645671104579843	0.827783467410055	0.827783467410055	0.645671104579843	1	-	0	0.60524179975777
45277	AGCATAATGTCTCTCATCCCCACTGGAAGGGAAAAAAAAAAAAAA|GAGCTACAATGGAACAAAACAAAAACATTTAACAACTTTGACACAGGGGCTCAGCACCTCTATCTGAGCCCCAGGGGTCCAGGCTGGGGCACGGCTGGATGGCCCTTCTCTACTGGTAGTGCCTTTGCTCCCAAGTGCAGGAAGAGGGCTAAAGAGAAACCTGCCCCTTAAC	1	0.934324217239705	0.678663838511242	0.755388832917641	N	N	2.83495528896373	2.98933999903981	2.83495528896373	splitr	19	0.422222222222222	0.422222222222222	0	N	0.6	N	N	3	6889	ENSG00000124334	ENSG00000155506	-	+	X	5	155251689	154197167	upstream	utr3p	IL9R	LARP1	155227246	154092462	+	+	0.422222222222222	19153136	154196577	-	+	Y	-	0.872147947347942	N	SKBR3_13_2_1	16	0	13	10	2	1	N	N	0	0	2	0.44700307240143	0.562892757838837	0.562892757838837	0.44700307240143	2	-	46	0.60524179975777
131001	TCCTTCCTAAGCCCACTACTCAGGCGGCGGCAGCGGTGCCTGCAGTGGCTGCAGCGGCGGCGGCGGCGGCG|TCCTGACCGCGTCCGACGGGCTGCTGGCGGGCAACGAGAAGCTAACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGCGGCCAACGGCGAGCTAGAGGTGAAGATCCGCGACTGGTACCAGAAGCAGGGGCCTGGGCCCTCCCGCGACT	2	1	0.332952788415832	0.5	N	N	2.82100211076019	3.40169305405954	2.82100211076019	splitr	17	0.23943661971831	0.23943661971831	0	N	0.323943661971831	N	N	6167	58670	ENSG00000166913	ENSG00000171345	-	+	20	17	43537173	39684560	utr5p	coding	YWHAB	KRT19	43514317	39679869	+	-	0.23943661971831	43514396	39684297	-	+	Y	-	0.941950067251227	N	SKBR3_13_2_1	1	0.754385964912281	1	1	0	1	N	N	0.754385964912281	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	2605.5	0.60524179975777
141084	AATACTACGACAAAGCCTTTGACCGCATCACCACGAGGAGTGAGAAGC|CCCCTCTCACCAGCCATGGAAGCCAGCAGTATCGAG	1	0.00326627451059246	0.254583648908217	0.223418152789081	N	N	3.51104337473878	3.54448360424261	3.51104337473878	splitr	1	0.0277777777777778	0.0277777777777778	0	N	0.138888888888889	N	N	3343	0	ENSG00000100353	ENSG00000127589	+	-	22	8	36925483	30211034	coding	intron	EIF3D	TUBB4Q	36906897	30209389	-	+	0.0277777777777778	36915517	30210335	-	-	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.438725237727329	0.422169568379128	0.438725237727329	0.422169568379128	1	-	0	0.60524179975777
83115	ATTTTTTTTTTTTTTTGAGTTGGAGTCTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGC|TATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACCCGATCGGCATAGCGCACTACAGCCCAGAACTCCTGGGCTCAAGCGATCCTCCCACCTCAGCCTCCCGAGTAGC	15	0.511574516559763	0.0891119080875318	0.271889116194541	N	Y	3.51207644450867	3.62617734898681	3.51207644450867	splitr	282	0.542372881355932	0	1	N	0.813559322033898	N	N	25	0	ENSG00000143450	ENSG00000253128	+	-	1	14	151743808	107281252	intron	downstream	OAZ3	IGHV4-80	151735445	107281000	+	-	0.0169491525423729	151738242	50329313	+	-	Y	-	-	N	SKBR3_13_2_1	726	1	257.8	7	5	1	N	N	1	1	5	0.44700307240143	0.91056181415106	0.91056181415106	0.44700307240143	2	-	-	0.60524179975777
135306	AGCGACCTCCCGGTTCAATTCTTCAGTCCGGCTGGTGAACCAGGCTTCAGCATCCTTCCGGTTCTGCTCGGCCATGACCTCATATTGGCTTCGCATGTCACTCAGGATCTTGGCGAGATCGGTGCCCGGAGCGGAATCCACCTCCACACTGACCTGGCCTCCCACTTGGCCCCTC|TTCGTCTGATCCGTCCTAATCACAGCAGTCTTACTTCTCCTATCTCTCCCAGTCCTAGCCGCTGGCATCACTATACTACTAACAGACCGTAACCTCAACA	1	1	0.800133926999915	0.844771979185218	N	N	3.06886100299938	3.62824348852659	3.06886100299938	splitr	7	0	0	0	N	0.0299999999999998	N	N	58670	0	ENSG00000171345	ENSG00000237973	-	-	17	1	39684560	567996	coding	intron	KRT19	RP5-857K21.6	39679869	566454	-	+	0	39680778	567003	+	-	Y	-	1	N	SKBR3_13_2_1	8	0	4.5	2	6	1	N	N	0	0	6	1.24167520111508	0.877450475454658	1.24167520111508	0.877450475454658	1	-	0	0.60524179975777
136625	GAGGTGGCCCAGCCATGCCAGACGGGACCGTCTGGGGCGGTGGCTGCATGACTGAACCCTTGCACAAGTCGATGCTGCTTACAGAAGGAAGCAGGATATAGCTGTTCCTTAATTGGAGCTG|CACACCTGCCTGGCAAGGGCAGGGAAGAGCCGCGGCCTTCCTCTGCTGCTCCTTCCAGAGGGCAGGCGCCGTGGTGGGGGTGCCCGCCCGATGGCATCGCGGGAGGCTGAGCTCCCAGCAGCGGCTGAGGTCCTCCCTGGGTGGGAGCCACCCTTGTCCCCAGCTGGGCCGGCGGCTGGTGAGGGAGGG	2	1	0.14642513198438	0.165868294288181	Y	Y	3.65594388497418	3.41782614336956	3.41782614336956	splitr	310	0	0.0247933884297522	0	Y	0.0247933884297522	N	N	3489	18	ENSG00000148396	ENSG00000196366	+	-	9	9	139372141	139380518	utr5p	coding	SEC16A	C9orf163	139334549	139377947	-	+	0	139372139	139378921	+	-	N	29.8321626311875	2.13611348509569	N	SKBR3_13_2_1	1	0	1	1	0	2	N	Y	0	0	5	0.786394294039552	1.4982880760122	1.4982880760122	0.786394294039552	2	0	0	0.60524179975777
138414	GGCAAGATACCATCGCTCCTCTTCAGCTTCCTGGGGTAGGACTTTGAAGTCAAGGAACCAGGTCTCCAACCAGGCGAGGACAAAAGAGACGATGGGGAGC|AGGTAGCCAAATGCCTCGTCATCTAATTAGTGAGGCGCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGG	4	0.210852817123966	0.465528157851362	0.141351986025314	N	N	3.45041445226185	3.73912139251568	3.45041445226185	splitr	15	0.14	0.14	0	N	0.14	N	N	5039	0	ENSG00000131748	ENSG00000226958	-	-	17	X	37820454	108297792	coding	intron	STARD3	RN28S1	37793318	108297361	+	-	0.14	37814687	108297467	-	-	Y	-	1	N	SKBR3_13_2_1	5	1	4.75	4	4	1	N	N	0	1	4	0.976784491543865	0.562892757838837	0.976784491543865	0.562892757838837	1	-	0	0.60524179975777
26205	TCAAACTCCTCTTCTTCACCATCCTCATCGTCCTCGTCTTCCTCATCTTCTCCTTCTTCGTCCTCCTCCTC|ATCATCCCCACCATCATAGCCATCATCACCCTCCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACACTACTCCCTATATCTAACAACGTAAAAATA	1	0.406726107761094	0.526775457519482	0.600084425908804	N	N	2.49476703196392	2.98673014559691	2.49476703196392	splitr	19	0.0563380281690141	0.0140845070422535	0	N	0.183098591549296	N	N	2326	0	ENSG00000136938	ENSG00000225630	-	-	9	1	100778225	566063	coding	intron	ANP32B	RP5-857K21.8	100745638	565020	+	+	0.0563380281690141	100767420	565848	-	-	Y	-	1	N	SKBR3_13_2_1	2	0.586206896551724	2	2	2	1	N	N	0.586206896551724	0	2	0.480114411097832	0.45528090707553	0.480114411097832	0.45528090707553	2	-	0	0.60524179975777
133907	GTCCAGAATCTTCTGTTTGTCCTCATCGTTAATCTTGCCTTGAAGTTT|CTCATCTTCCTCCTCCTCGTCGTCTTCCTCCCCTTCCCCTGCTAAGCCTGGCCCTCAGGCCTTGCCCAAACCTGCAAG	1	0.0421751490401538	0.375556752806067	0.399915574091196	N	N	3.35719722089263	2.46722876353202	2.46722876353202	splitr	9	0	0	0	N	0	N	N	37875	5610	ENSG00000109971	ENSG00000167978	-	-	11	16	122933938	2821411	coding	coding	HSPA8	SRRM2	122928197	2802330	-	+	0	122929046	2819178	+	-	Y	-	1.13092868203846	N	SKBR3_13_2_1	6	0.593406593406593	4.5	3	2	1	N	N	0	0.593406593406593	2	0.471836576423731	0.75328295534315	0.75328295534315	0.471836576423731	3	-	33	0.60524179975777
105296	CTGCTGCCAAGGCCGCCGGGGCGAGCGGAGCTCAGGCGCACCTGGGCGCCGCGGCCCGAGAAGGCGGCTGAGCGCGAGGTGAATACCGGGGAGCTGAAGTGGATGGACATGGTGGCTGGGCCGGGATGGACCTAGCGGCGGGCGAGGAGGAGC|TCTGCGCGGCGCGGCGGGCGATCCGAGCCGGGACGGGCTGCAGGCGGGGGTGCTGCAGAGGACACGAGGCGGCGGGCTGGAGACATGGACCGCGGCGA	2	1	0.374808295748621	0.564257146108723	N	N	3.00397601026352	2.9071955612682	2.9071955612682	splitr	18	0	0	0	N	0.0714285714285714	N	N	34840	8580	ENSG00000135480	ENSG00000076554	-	+	12	8	52662180	81143467	utr5p	utr5p	KRT7	TPD52	52626954	80870571	+	-	0	52627038	81083762	-	+	Y	-	16.0839701334354	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	209.5	0.60524179975777
141640	TGGCTTTTAGGATGGCAAGGGACTTCCTGTAACAACGCATCTCATATTTGGAATGACTATTAAAAAAACAACAATGTGCAATCAAAGTCCTCGGCCACATTGTGAACTTTGGGGGATGCTCGCTCCAACCGACTGCTGTCACCTTCACCGTTCCAGTTTTTAAATCTAAGTCATAGTCCGCCTAGAAGCATTTGCGGTGGACGATGGAGGGGCCGGACTCGTCATAC|TCCACGGAAGCAATATGAAATGATCTGCTGCAGTGCTCTGAGCCCTAGGATTTATTTTTCTTTTCACCGTAGGTGGCCTGACTGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGTACTACGTTGTAGCCCACTTCCACTATGTCCTATCAATAGGAGCTGTATTTGCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACCCTAGACCAAACCTACGCCAAAATCCATTTCGCTATCATATTCATCGGCGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTAC	1	8.66656374248587e-12	1	0.935920242646516	N	N	3.56488607910057	3.59784511035345	3.56488607910057	splitr	5	0.00881057268722485	0	0	N	0.0396475770925109	N	N	30285	0	ENSG00000075624	ENSG00000237973	-	-	7	1	5603415	567996	coding	intron	ACTB	RP5-857K21.6	5566782	566454	-	+	0.00881057268722485	5567424	567434	+	-	Y	-	1	N	SKBR3_13_2_1	12	0	7	2	2	1	N	N	0	0	2	0.827783467410055	0.695338112624446	0.827783467410055	0.695338112624446	2	-	0	0.60524179975777
139308	TTTGTAAAGATTAAGCTCATTTAGTGTTGTTTTTTTTTTTTTTTTTTTTT|TTTTTTTTTTTTTGAGCAAAGCGTACAAAGGTTCCAAGGGACAGGACCAAGAACGAGGGGCTGAGACATTTACAACAGCAGGCATTTTCTCTTCCTCTTCTTCACGGGAGGCGGGCAGAGGACTGCTCGGATCGCTTCGTCAAACACTGTCTTGATGCCTCGCTGTGTGAGC	2	1	0.935695919090345	0.96241881209261	N	N	2.28540149461911	2.95899505402916	2.28540149461911	splitr	38	0.44	0.44	0	N	0.48	N	N	2617	0	ENSG00000124193	ENSG00000249936	+	-	20	4	42092245	46726625	utr3p	downstream	SRSF6	RP11-284E20.1	42086568	46725793	+	-	0.44	42089998	46725778	+	-	Y	-	-	N	SKBR3_13_2_1	14	0.725490196078431	10	6	2	1	N	N	0.725490196078431	0	2	0.422169568379128	0.703615947298547	0.703615947298547	0.422169568379128	2	-	-	0.60524179975777
136946	GATAGGGACTGTCATTTGGCCCCATTATTGTAGCTTGCCAATGGAACATATCATCTCCAACAGGACCTGCTGAACACTGTGCTGGAGGGTCCCGTGCCAGATCATTCAATTCCTTGTGGATTCTCTTCAGAGCCATGGTGGGAGGCGGGTGGCGGCGGCCCCCGGGGCGGGGACGGGGGCGGG|AGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGAGGCGCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGACTTGGCGGAATCAGCGGGGAAAGAAGACTC	2	0.927615725672823	0.173492094339918	0.215420638564212	N	N	2.14529895685502	3.76848670091893	2.14529895685502	splitr	13	0	0	0	N	0	N	N	1457	0	ENSG00000131508	ENSG00000226958	-	-	5	X	139008018	108297792	utr5p	intron	UBE2D2	RN28S1	138906016	108297361	+	-	0	138941330	108297448	-	-	Y	-	1	N	SKBR3_13_2_1	5	1	5	5	2	1	N	N	0.171597633136095	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	0	0.60524179975777
116894	CCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATCACCACCCAACAATGACTAATCAAACTAACCTCAAAACAAATGATAACCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCA|ACCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAGTGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATAACATTCACAGCCACAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACACCCTAGGCTCACTAAACA	1	6.71444336784805e-08	1	0.935920242646516	N	Y	3.34524984382466	3.5529387020326	3.34524984382466	splitr	543	1	0	0	Y	0.382978723404255	N	N	38194	93473	ENSG00000198899	ENSG00000198886	+	-	MT	MT	9207	12137	coding	coding	MT-ATP6	MT-ND4	8527	10760	+	+	0	8808	10978	+	-	N	0.748787042692947	-	N	SKBR3_13_2_1	9	0	6	3	3	3	N	N	0	0	3	1.02645149958847	1.12578551567767	1.12578551567767	1.02645149958847	1	3552.33333333333	-	0.60524179975777
93645	TGCATTCCCAAGCAACCCGACTCTGGAAAGACCCAGGCGTGGCAGCCAGGGGCTGCTAATGGCCTCACACCGTCCACAGGCTGGCTGGGCCTCAATCAGAAGGACTTGGGCCCCCACAAGTGGCGTTGGGGAGTGAGTCTTCCATACGCCACATTTCCCGC|GCCCCACCGCGGGGCGGGGATTCGGCGCTGGGCTCTTCCCTGTTCACTCGCCATTACTGAGGGAATCCTGGTTAGTTTCTTTTCCTCCGCTGACAAATATGCTTAAATTCAGCGGGTCGCCACGTCTGATCTGAGGTCGCGGGCCTCGATCAGAAGGACTTGGGCCCCACACGAGCGGCGCCGGGGAGTGGGTCTTCCGTACGCCAC	1874	1	0.920445449301774	0.998541280626005	N	N	3.64706102209572	3.01447974240766	3.01447974240766	splitr	0	0.130434782608696	0	0.2	N	0.254658385093168	N	N	0	0	ENSG00000201966	ENSG00000141161	+	-	19	17	24187309	33516364	downstream	intron	5_8S_rRNA.4	UNC45B	24187160	33474836	-	+	0.248447204968944	24186072	33478135	+	-	Y	-	1	N	SKBR3_13_2_1	2	1	1.2	1	1	1	N	N	1	0.693023255813954	5	0.894006144802859	1.5810664227532	1.5810664227532	0.894006144802859	2	-	0	0.60524179975777
136934	GTCCAGAATGTCACAGGTCCAGGGCAGAGGACCAACATGGGCATTTTGTTTATGAGCAAGGTGGGTCTCAGAGGTGATCGGCGATCAGAGGGCGATGAAGTTCTAGATCCATTGAGACAAGCTCTAGACAGTAGCATGCAGTCCCACAACTTGTACCAGCATCCCCAGCATCTGGCATTCCATGTTTCTGCTCCTG|TCTAGATCCATTGAGACAAGCTCTAGGCAGTAGC	12	1	0.669130872932702	0.949526148133372	N	N	3.19078119536255	3.64926987640973	3.19078119536255	splitr	0	0.0294117647058828	0.0294117647058828	0	N	0.617647058823529	N	N	2538	0	ENSG00000255659	ENSG00000235857	+	-	17	Y	29362671	59001635	coding	upstream	AC138207.2	CTBP2P1	29361032	59001391	+	+	0.0294117647058828	29361566	26508355	+	-	Y	-	-	N	SKBR3_13_2_1	32	0	24	16	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
116440	GGCGGCCACTTCCGCTTCCGCTGGGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCG|GTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGCAGCCTTTTTAATGCTGCTGGGGTCTTGGTAGAAGCGCGTGCAAAAGCCATTCTGGACTTCCTGGATGCCCTGCTAGAGCTGTCTGAAGAGCAGCAGTTTGTGGCTGAGGCCCTGGAGAAGGGG	84	0.218744813596347	0.483068104689352	0.465457190063238	N	N	3.6491271616355	3.64553343878587	3.64553343878587	splitr	5	0.0149253731343282	0	0	N	0.641791044776119	N	Y	485	5095	ENSG00000147687	ENSG00000073605	+	-	8	17	125551699	38077313	coding	coding	TATDN1	GSDMB	125500726	38060848	-	-	0.0149253731343282	125551266	38062238	-	+	Y	-	-	N	SKBR3_13_2_1	2	0	1.02222222222222	1	1	6	N	N	0	0	45	0.695338112624446	1.80456795895392	1.80456795895392	0.695338112624446	4	-	-	0.60524179975777
95201	ATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCC|CCCCTCCTCCCCCCCCTCCCCTGCAGCCCCACGGAGTCTACGCCGGGAGGAGTAGGAGGGCCGCTGCGGTAAGCTTTGAAGCCTAGGGTATGGGCCCAGGTGGATAGGCCACAGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGC	1	0.0254846944009828	0.261533274614987	0.233421673643755	N	N	3.32423818963975	2.83986884469249	2.83986884469249	splitr	0	0	0	0	N	0.0790960451977402	N	N	0	0	ENSG00000162669	ENSG00000252318	+	+	1	2	91870426	133038738	intron	upstream	HFM1	AC097532.1	91726323	133038647	-	-	0	91853045	133038834	+	+	Y	1	-	N	SKBR3_13_2_1	2	1	2	2	3	1	N	N	1	1	3	0.951950987521563	0.496670080446033	0.951950987521563	0.496670080446033	1	0	-	0.60524179975777
114656	AGCAGAAAATCAGAAGCTGGATTTCAGTACTGGAAACTTCAATGTGTTAGCTGTTAGAATCGCTGTTCTGGCATCCATTTGCGTTACTCAGGCATTTATGATGTGGAAGTTCATTAATTTTCAGCTTCGAAGGTGGAGGGAACATTCTGCTTTTCAGGCACCAGCTGTGAAGAAGAAACCAACAGTAACTAAAGGCAGATCTTCTAAAAAAGGAACAG|GCCTCCAGAGAACATATTACTGCTTTGATATTACAAAGGGAAAAACAGCTATGGCGTCTCTGAAAAGCACAACGTGCTAGGACTGGAATGACTTTAAAACCACACATAAATTTCTGAGAGATTTTTGCCATAAGGTACCATCCACCTTACTGTAAACCACATCCTAAAATTGTCTGCAGTGCAAATGGATTATGTGCATCCAA	10	1	0.837283472771301	0.0775249734539504	N	N	3.35253057547976	3.5319270478477	3.35253057547976	splitr	6	0.00492610837438412	0	0	N	0	N	N	2719	3150	ENSG00000067167	ENSG00000205176	+	+	8	8	71520622	86575726	coding	utr3p	TRAM1	REXO1L1	71485677	86568695	-	-	0.00492610837438412	71495399	86571379	-	-	N	-	-	Y	SKBR3_13_2_1	15	0	14.5	14	30	1	N	N	0	0	30	1.80456795895392	1.73006744688701	1.80456795895392	1.73006744688701	4	-	-	0.60524179975777
134869	TTTACTTCTCTTGTATAAAAACCCTATGTTGTAGCCACAGCTGGAGCCTGGTGGGTCTTGATGAGGTGGTCAGTGAATTCCTGATCGGGAGACTTGGTGAATACAGTCTCCTTCCAGAGGTCGGGGGTCAGGTAGCTGTAGGTCTTAGAGATGGCATCAAAGGTGCCCTTGGCAAAGCTGCCCAGGGTGG|ACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGA	1	1	0.899266171301115	0.897571427984624	N	N	3.13127862861135	3.41319935075004	3.13127862861135	splitr	8	2.22044604925031e-16	0	0.5	N	2.22044604925031e-16	Y	N	591	0	ENSG00000168389	ENSG00000162669	-	+	1	1	40435638	91870426	intron	intron	MFSD2A	HFM1	40420802	91726323	+	-	2.22044604925031e-16	40428910	91853060	-	+	N	1.35737887826357	1	N	SKBR3_13_2_1	33	1	23.5	14	2	1	N	N	0	1	2	0.827783467410055	0.745005120669049	0.827783467410055	0.745005120669049	1	24.5	0	0.60524179975777
108847	CCCTTCTAAACGCTAATCCAAGCCTCACCCCACTACTAGGCCTCCTCCTAGCAGCAGCAGGCAAATCAGCCCAATTAGGTCTCCACCCCTGACTCCCCTCAGCCATAGAAGGCCCCACCCCAGTCTCAGCCCTACTCCACTCAAGCACTATAGTTGTAGCAGGAATCTTCTTACTCATCCGCTTCCACCCCCTAGCAGAAAATAGCCCACTAATCCAAACTCTAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGCGCCCTTACACAAAATGACATCAAAAAAATCGTAGCCT|CATCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCATATCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAACCCACCCCATTCCT	1	1.33119652445839e-07	0.704121951840997	0.776581847210919	N	N	3.43152237077921	2.99202863319555	2.99202863319555	splitr	15	0	0	0	N	0	Y	N	54817	24767	ENSG00000198786	ENSG00000198763	+	-	MT	MT	14148	5511	coding	coding	MT-ND5	MT-ND2	12337	4470	+	+	0	13246	5297	+	-	N	-	-	N	SKBR3_13_2_1	4	0	2.75	1	3	3	N	N	0	0	4	1.01817366491437	1.00161799556617	1.01817366491437	1.00161799556617	1	-	-	0.60524179975777
132443	GTGACCGGGATGAATGCCTGGCTCCCCCTTCTTTCCAGCCCTAGCTCAGGCCCATCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTGG|TTACCCCCCTCTCTCCTACTCCTGCTTGCATCTGCTATAGTGGAGGCCGGCGCAGGAACAGGTTGAACAGTCTACCCTCCCTTGGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTATCTCCTCTATCTTAGGAGCCATCAATTTCATCACAACAATTATTAATATAAAACCCCCTGCCATAACCCAATACCAAACGCCCCTTTTCGTCTGATCCGTCCTAATCACAGCAGTCTTACTTCTCCTATCTCTCCCAGTCCTAGCCGCTGGCATCAC	2	6.23290976168466e-13	0.170189729447764	0.209300629116717	N	N	3.05740813947137	3.08465387517235	3.05740813947137	splitr	7	0	0	0	N	0	N	N	83603	0	ENSG00000130600	ENSG00000237973	-	-	11	1	2022700	567996	intron	intron	H19	RP5-857K21.6	2016406	566454	-	+	0	2019001	566766	+	-	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	2	2	N	N	0	0	2	0.480114411097832	0.430447403053228	0.480114411097832	0.430447403053228	2	-	0	0.60524179975777
141681	AAGGCATCCTGAGAGAGTTCTAGACCGACCCAGGTCCTGTGGCACACTATACGGGTCAGGAGGGGTGGAAGACAGGCCTAAGCTCTAGGACGGTGAATCTCGGGGCTATTTGTGGATTTGTTAGAAACAGACATTCTTTTGGCCTTTTCCTGGCACTGGTGTTGCCGGCAGGTGGGCAGAAGTGAGCCACCAGTCACTGTTCAGTCATTGCCACCACA|ATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAA	6	1	0.225330085001519	0.544073600774876	N	N	3.45181824439233	3.61038447681384	3.45181824439233	splitr	19	0	0	0	N	0.0151515151515149	N	N	3033	3	ENSG00000122359	ENSG00000230021	-	-	10	1	81965433	659930	coding	intron	ANXA11	RP5-857K21.4	81910645	536816	-	-	0	81915626	569115	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	4	0	3.5	3	2	1	N	N	0	0	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	1	-	0	0.60524179975777
130016	CGGTGTGCTGGCTTCACCTGCCTGCACCCGCTCACCCTGAGCGCCTTGGGGTGGTGGGAGGCGCTGGAATCCCCACTGTG|CAGTAAGCCCAGAGGTCTCCACCCCACGGGAGGAAGGCTGAGGCCAAGACCCCGGAAGAGATGGACCGCGTGACCAGATACCCCATCCTGGGCATCCCTCAGGCACACCGTGGCACCGGCCTGGTGCTGGATGGAGACACC	1	0.505898609488472	0.612610548302747	0.693969709788871	Y	Y	3.41000685548453	3.43614916339873	3.41000685548453	splitr	221	0	0.0125000000000002	0	Y	0.0125000000000002	N	N	23	2492	ENSG00000099864	ENSG00000099812	+	-	19	19	748328	764318	downstream	intron	PALM	C19orf21	708953	751146	+	+	0	748513	756887	+	-	N	-	0.646196319916724	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	3	0.496670080446033	0.852616971432356	0.852616971432356	0.496670080446033	1	-	31.6666666666667	0.60524179975777
141385	CGCGGCGATATCATCATCCATGGTGAGCTGGCGGCGGGTGTGGACGGG|ATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGGACGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTAGTCATCTAATTAGTGACGTTCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGTGGAATCCGCGGGGAAAGAAG	4	0.657584295868767	0.121527969902321	0.22234549849568	N	N	3.45297510534159	3.25252712599539	3.25252712599539	splitr	18	0.125	0	0	N	0.25	N	N	30285	0	ENSG00000075624	ENSG00000198626	-	-	7	1	5603415	238129359	utr5p	intron	ACTB	RYR2	5566782	237205505	-	+	0.125	5570175	237766338	+	-	Y	-	1	N	SKBR3_13_2_1	9	1	5.33333333333333	3	6	1	N	N	0	1	6	0.852616971432356	1.41550972927119	1.41550972927119	0.852616971432356	1	-	0	0.60524179975777
125114	AACCTGTCCCCTCGGTTGTGTTGAAGTCCCCTGGACAGTGGGCAGGGGTGGCAGAGGACACGAGCAGCCACTGCCCGTACCCCCTCTCCTCTCTGTAAGCCCATGCCCTGTCTTCCCAGGGACTTGTGAGCCTCTTCCCTCGACGGTCCTCTTCTCTCCTTCCAGTCCTCTCCCCCTGCTGTCTGCAGCCCCTCCCCGGGGAGTTGGTGCTTTCTTTTCC|TTTTTTTTTTTTTTTCCAGGAAGACACTACGATCCTTTTTCTCTAC	8	1	0.245142686227586	0.630676151708166	N	N	3.15575602456989	2.83392221919384	2.83392221919384	splitr	26	0.41304347826087	0.41304347826087	0.5	N	0.434782608695652	N	N	3910	0	ENSG00000103495	ENSG00000228114	+	+	16	4	29822502	191010176	utr3p	upstream	MAZ	DUX4L3	29817427	191008560	+	+	0.41304347826087	29821983	130167919	+	+	Y	-	-	N	SKBR3_13_2_1	38	0	29	20	2	1	N	N	0	0	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	2	-	-	0.60524179975777
113131	ACCTCCCGGTTCAATTCTTCAGTCCGGCTGGTGAACCAGGCTTCAGCATCCTTCCGGTTCTGCTCGGCCATGACCTCATATTGGCTTCGCATGTCACTCAGGATCTTGGCGAGATCGGTGCCCGGAGCGGAATCCACCTCCACACTGACCTGGCCTCCCACTTGGCCCCTCAGCGTACTGATTTCCTCCTCATGGTTCTTCTTCAGGTAGGCCAGCTCTTCCTTCAGGCCT|TCGATCTTCTTCACAACCACGGCCCTCGAGGAGCTGGTGCGGCTGAAGGAGCTGGAGCCCGCGCCAGAGCCAAAGCTGGAG	1	0.445405371378608	0.311204357582937	0.306030290211129	N	N	3.36504701400119	3.71041843152174	3.36504701400119	splitr	8	0.0864197530864196	0.0864197530864196	0	N	0.148148148148148	N	N	58670	0	ENSG00000171345	ENSG00000224520	-	+	17	1	39684560	157044494	coding	intron	KRT19	RP11-110J1.3	39679869	157043049	-	+	0.0864197530864196	39681140	157044444	+	+	Y	-	1	N	SKBR3_13_2_1	20	0	12	4	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
140288	GGCAAGAGTTTACAGGAAGGTCCTAACCAACTTCAAGGGCACTGCCAGGACACC|ACCAACTGCTTAGCACCCCTGGCCAAGGTCATCCATGACAACTTTGGTATCGTGGAAGGACTCATGACCATAGTCCACGCCATCACTGCCACCCAGAAGACTGTGGATGGCCCCTCCGGGAAACTGTGGCGTGATGGCCACGGGGCTCTCCAGAACATCATCCC	1	0.756687591607622	0.311204357582937	0.306030290211129	N	N	3.54144175291192	3.6272104187567	3.54144175291192	splitr	4	0.0740740740740742	0.0185185185185185	0	N	0.0740740740740742	N	N	9025	0	ENSG00000198668	ENSG00000228232	-	+	14	X	90874617	39647390	utr3p	intron	CALM1	GAPDHP1	90863327	39646386	+	-	0.0740740740740742	90873582	39646931	-	+	Y	-	1	N	SKBR3_13_2_1	8	0	5	2	2	1	N	N	0	0	2	0.76156079001725	0.827783467410055	0.827783467410055	0.76156079001725	2	-	0	0.60524179975777
78042	GCTAACCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTAC|CCCTCACAATCATGGCAAGCCAACGCCACTTATCCAGTGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATAACATTCACAGCCACAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTA	1	1	1	0.935920242646516	N	Y	3.12332620197713	3.67741954747551	3.12332620197713	splitr	346	1	0.043103448275862	0	Y	0.129310344827586	N	N	24767	93473	ENSG00000198763	ENSG00000198886	+	-	MT	MT	5511	12137	coding	coding	MT-ND2	MT-ND4	4470	10760	+	+	0	5352	10980	+	-	N	-	-	N	SKBR3_13_2_1	6	0	4	2	4	2	Y	N	0	0	4	1.09267417698127	1.17545252372228	1.17545252372228	1.09267417698127	2	-	-	0.60524179975777
128028	AGTGCAAGAACAGTTAACCTTTCTTAATTGATTTTTGTAATTGGAGGTTTATATTGTCTTGCCTAATGCATATTCTCTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGTTCTGTTGCCAGGCTGGAGTGCGGTGGTGCAATCTCAGCTCACTGCAATCTCCACCTCCTGGGTTCAAGAGGTTCTCCTGCCTCAGCCTCCTGAGTAGCCGGGGAGCTACAAGCATGCACCACCACACCCAGCTAATTTTTTTTTTTTTTT|TTTTTGAGAGGAGTCTCGCTCTGTCGCCCAGGCTGGAGGGCAGTGGCGCGAT	2	0.279460276037483	0.746902376490081	0.902195137443948	N	Y	2.74811370055571	3.2274272354209	2.74811370055571	splitr	311	0.884615384615384	0.884615384615384	0.5	N	0.884615384615384	N	N	3257	2	ENSG00000182180	ENSG00000136267	+	-	10	7	75012451	15014402	utr3p	intron	MRPS16	DGKB	75006510	14184674	-	-	0.884615384615384	75009978	14728845	-	-	Y	-	1.02607222004954	N	SKBR3_13_2_1	88	0.907407407407407	51.5	15	2	1	N	N	0.379310344827586	0.907407407407407	2	0.827783467410055	0.44700307240143	0.827783467410055	0.44700307240143	1	-	0	0.60524179975777
67030	GCCTTGACCTCAGCGATGATGCCGTCCAGGTCCAGGGAGCGACTGTTGTCCATGGACAGCACCACAGATGTGTCGGAGATCTGGGACTGCAGCTCTGTCAACTCCGTCTCATTGAGGGTCCTGAGGAAGTTGATCTCATCATTCAGGGCATCCACCTTGGCCTCCAGCTCCACCTTGCTCATGTAGGC|AGCATCCACAGCCATACATCTTCCCTGACTCTCCTGGGGGCACCTCCTATGAGAGATACGATTGCTACAAGGTCC	1	1	0.899266171301115	0.897571427984624	N	N	3.50376264308368	3.33168675516419	3.33168675516419	splitr	41	0.253333333333333	0.133333333333333	0	N	0.253333333333333	N	N	34840	19357	ENSG00000135480	ENSG00000147684	-	-	12	8	52662180	125580751	coding	coding	KRT7	NDUFB9	52626954	125551344	+	+	0	52632476	125555450	-	-	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
136488	GGCGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGTACATGCCTATAATCCCAGCTACTCAGGAGGTGAGGCAGGAGAATCACTTGAACCCGGGA|GGCAGAGGTTGCAGTGAGCCGAGATCGTGTCGC	1	0.561522878466796	0.899266171301115	0.897571427984624	N	Y	3.57233464462502	3.40251826628863	3.40251826628863	splitr	193	0.727272727272727	0.515151515151515	1	N	0.606060606060606	N	N	392	0	ENSG00000059588	ENSG00000236778	+	+	1	13	234614849	52124128	intron	intron	TARBP1	RP11-550E22.3	234527059	52028283	-	+	0.666666666666667	234543173	52096958	-	+	Y	-	1	N	SKBR3_13_2_1	1980	1	1506	1032	2	1	N	N	1	1	2	0.620837600557541	0.703615947298547	0.703615947298547	0.620837600557541	1	-	0	0.60524179975777
110906	AGCCCAGGGACCGGTAGTTGGTGGAGAAGGTGGAGCGA|TTTGTCTGGCTAATTCCAATAACGAACGAGACTCTGGCATGCCAACTAGTTATGTGACCCTGGAGCGGTCGGCATCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCTGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAAATGTCCAGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGT	1	1	0.205558172728075	0.155228020814782	N	N	3.26883215707457	3.82232940528072	3.26883215707457	splitr	10	0.184210526315789	0	1	N	0.184210526315789	N	N	31732	1	ENSG00000111057	ENSG00000163046	-	+	12	2	53346684	133015542	coding	intron	KRT18	ANKRD30BL	53342655	132905164	+	-	0.184210526315789	53342972	133012423	-	+	Y	-	0.81549815498155	N	SKBR3_13_2_1	16	1	8.5	1	1	1	N	N	0	1	2	0.620837600557541	0.413891733705027	0.620837600557541	0.413891733705027	2	-	0	0.60524179975777
96717	GGAAATAGAATGATCAGTACTGCGGCGGGTAGGCCTAGGATTGTGGGGGCAATGAATGAAGTGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTTTGTTATAGTTTTTTATTTTTATGGGCTT|GGTGAAGGAAGGGCTGGTCATGGTGGAGGTGCGCAAGGAGAAACAGTTCCAGAAAGTGGTA	1	0.0431805058750813	0.205558172728075	0.155228020814782	N	N	2.81663226893456	3.23374944521961	2.81663226893456	splitr	15	0.0819672131147541	0	0	N	0.229508196721312	N	N	3	13658	ENSG00000230021	ENSG00000197157	-	-	1	7	659930	127732661	intron	coding	RP5-857K21.4	SND1	536816	127292234	-	+	0.0819672131147541	569032	127729687	-	-	Y	0.828962371721779	0.6404641593763	N	SKBR3_13_2_1	3	0	2.33333333333333	2	3	1	N	N	0	0	3	1.05956283828487	0.471836576423731	1.05956283828487	0.471836576423731	1	0	220.333333333333	0.60524179975777
46878	CCTCTACCAAGATCTCTCTGGCCTTAGCGCACAGGGCCTTGACTTCGCTCTCCTTGATGAGCTCGCAGCGACGCAGCTGCTCGATCTGCCGGTCCAGGTCGCTGATCTCCGCCATGGCCCACCCCCGGCGCGGGTCAGAGTCGGG|GCCGCCGCCGCCCTACCTGGTGAAGCAGTAC	1	0.112061711112447	0.254583648908217	0.223418152789081	N	N	3.17255146128921	3.41085529405366	3.17255146128921	splitr	14	0	0.419354838709677	0	N	0.419354838709677	N	N	1597	800	ENSG00000149923	ENSG00000143499	-	+	16	1	30096698	214510474	utr5p	intron	PPP4C	SMYD2	30087311	214454445	+	+	0	30087669	214454786	-	+	Y	-	1.11332841654214	N	SKBR3_13_2_1	49	0.357142857142857	13.75	1	3	1	N	N	0	0.357142857142857	4	0.852616971432356	0.463558741749631	0.852616971432356	0.463558741749631	1	-	24	0.60524179975777
138987	GAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACT|AAAAAAAAAAAAGGCTGCCCAGTATTGTTACAGTGGGCTCCTAC	11	0.361004052517088	0.0589490042767064	0.155661435131802	N	N	3.23999710710482	3.19496271770798	3.19496271770798	splitr	15	0.25	0.318181818181818	0	N	0.431818181818182	N	N	14698	18	ENSG00000187514	ENSG00000165029	+	+	2	9	232578251	107690518	utr3p	utr3p	PTMA	ABCA1	232571605	107543283	+	-	0.25	232577586	107545135	+	-	Y	-	-	N	SKBR3_13_2_1	136	0.411764705882353	65.5	18	4	1	N	N	0.0844155844155844	0.411764705882353	4	1.05128500361077	0.422169568379128	1.05128500361077	0.422169568379128	2	-	-	0.60524179975777
104321	TCCAGGCCCTCCCTATCCTGAAGACATTAGCTGAGAGTCTGGCACCTTTTAAAGGTCTGATCATCAATTGTCTCTCTGGGCGGCCACCTATGAGACTTCATCTGTGTGGT|TATACCTTATTGGTGTGGACGTTGTCTAAATTTCGGTAGCCATGGCACAAGAATATAGTAAGTACTATGC	3	0.288087288649327	0.951795713797723	0.802063025170886	N	Y	3.6052936758779	3.55976477294109	3.55976477294109	splitr	180	1	0	0	N	0.814285714285714	Y	N	0	1000	ENSG00000253128	ENSG00000197555	+	-	14	14	107281252	72206118	downstream	upstream	IGHV4-80	SIPA1L1	107281000	71996042	-	+	0	71979564	71996031	+	-	N	-	-	N	SKBR3_13_2_1	1	1	1	1	0	2	N	N	1	0	3	0.728449451320848	0.496670080446033	0.728449451320848	0.496670080446033	1	-	-	0.60524179975777
67327	TGGCCACGGGCTCTGGAGGCCAGTGCCTCCCGCTCGCCGCCCGCTGCGCTCCTCACCCCT|TTCTTGACCTCCTCCTCCTTCAAGCTCAAACACCACCTCCCTTATTCAGGACCGGCACTTCTTAATGTTTGTGGCTTTCTCTCCAGCCTCTCTTAGGAGGGGTAATGGTGGAGTTGGCATCTTGTAACTCTCCTTTCTCCTTTCTTCCCCTTTCTCTGCCCGCCTTTCCCATCCTGCTGTAGACTTCTTGATTGTCAGTCTGTGTCACATCCAGTGATTGTTTTGGTTTCTGTTCCCTTTCTGACT	1	1	0.447538936456759	0.5	N	N	2.86800244849925	3.05476778080493	2.86800244849925	splitr	5	0.0833333333333333	0.0833333333333333	0	N	0.0833333333333333	N	N	83603	1101	ENSG00000130600	ENSG00000170296	-	-	11	17	2022700	7145772	intron	utr3p	H19	GABARAP	2016406	7143333	-	-	0.0833333333333333	2017872	7144113	+	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
103255	CACCTCCTCCTCCTCTGCCTCCTCGGAAGCCTCCTCGCCCTCCAAAGCCTCCCCGGCCTCTGCCACCAAATCCTCCTCGGCCTCCTCTACCACCACCTCGTCCTCCAAAGCCGCCTCTGCCTCCACCACGACCCCCGAAGCCACCTTCACCCTTAGGTTTGGCCCAGTCCAAGGTAACTTTATTTCCATCAATTTCACCGTCTTCCATGGCCTCCTTGGCAGCTTTGGCATCCTCCTCAC|CCTACTCCTAATCACATAATCTATTCCCCCGAGCAAT	1	0.96986908066308	0.526775457519482	0.600084425908804	N	N	3.22952388018421	3.35161207139652	3.22952388018421	splitr	7	0	0	0	N	0	N	N	1636	31	ENSG00000255948	ENSG00000132570	+	+	2	5	232323077	134343649	coding	intron	AC017104.1	PCBD2	232319621	134240596	+	+	0	232320312	134260356	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	2	-	1	0.60524179975777
121550	TCTCCCCAGAAAGCCAATCATCACCCGTGTCTCCGCCTCAGTAACAGCCAGATGGAGTTTGGTGTGCCCTGTCTCATTGGAACCACCACCCCAGCAGTGGGGTACAACAGACCACAGTGGGTGGGGTGGGCAGTGCTACGGGGCTGGCATGTTGCCCTGGGGGGAA|CCTTCTCTCTCCTGGGCGAGATCTCGGTGGGGGCCGGCAGGCGGGGACGGGGGCACCGGGTCCCGCGGGGCTCCGTCTTCCATCTGCAGGATCCCCCGTGCCCCA	3	1	0.130715914556096	0.197936974829114	Y	Y	3.1840484104099	3.26616992024256	3.1840484104099	splitr	271	0	0.0285714285714286	0	Y	0.0285714285714286	N	N	497	7	ENSG00000132510	ENSG00000183914	-	+	17	17	7758106	7737058	utr5p	downstream	KDM6B	DNAH2	7743222	7623039	+	+	0	7743225	7739898	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	2	0.546337088490636	0.471836576423731	0.546337088490636	0.471836576423731	1	-	-	0.60524179975777
131272	GTGGCTTCTTCGTAGGGTTCCTCAGCCTCTTCCTCTACCTCATCACCATCCTCATCGTCCTCGTCATCATCGGCTTCTTCTTCTTCCACCTCAGC|CACTACTCCCTATATCTAACAACGTAAAAATAAAATGACAGTTTGAACACA	1	0.0707826026022932	1	0.935920242646516	N	N	3.22799629687436	3.0667948634596	3.0667948634596	splitr	15	0.0784313725490198	0.0784313725490198	0	N	0.117647058823529	N	N	8411	0	ENSG00000142192	ENSG00000225630	-	-	21	1	27543446	566063	coding	intron	APP	RP5-857K21.8	27252861	565020	-	+	0.0784313725490198	27394318	565927	+	-	Y	-	1	N	SKBR3_13_2_1	2	1	2	2	3	1	N	N	1	0	3	0.45528090707553	0.844339136758256	0.844339136758256	0.45528090707553	1	-	0	0.60524179975777
79526	TCCGGGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTG|GCTTGGCGCCAGAAGCGAGAGCCCCTCAGGGCTCGCCCCCCCGCCTCACCGGGTCAGTGAAAAAACGATCAGAGTAGTGGTATT	1	0.119288165897262	0.467532148991838	0.526369772984128	N	N	3.54552998930151	3.12445255770286	3.12445255770286	splitr	5	0.0595238095238096	0	0.333333333333333	N	0.154761904761905	N	N	0	0	ENSG00000162669	ENSG00000226958	-	+	1	X	91870426	108297792	intron	upstream	HFM1	RN28S1	91726323	108297361	-	-	0.0595238095238096	91852911	108297821	-	+	Y	1	-	N	SKBR3_13_2_1	1	0.99107142857143	1	1	0	1	N	N	0.99107142857143	0.947916666666667	3	0.927117483499261	0.794672128713653	0.927117483499261	0.794672128713653	1	0	-	0.60524179975777
85941	CGGTGAAGAGACGTGAGAGGTGTAGAATAAGTGGGAGGCCCCCGGCGCCCCACTGTCCCCGGGAGGGGGCGGGGCGGGGTCTGCCCGCCTTGAGGGCTGCCGGTGTAATACCACTACTCTGATCGTTTTTTTTTCACTGACCTGGTGAGGCCGGGGGGGCGGGGGGCGAGCCCCGAGGGG|ACAGTGCCAGGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCT	8	0.106758072443311	0.100781395074444	0.264802881996348	N	N	2.57445679616388	3.25360004855864	2.57445679616388	splitr	4	0.0121212121212121	0	0.285714285714286	N	0.860606060606061	N	N	0	0	ENSG00000220804	ENSG00000162669	+	+	2	1	243102304	91870426	upstream	intron	AC093642.5	HFM1	243030784	91726323	+	-	0.0121212121212121	78928957	91853141	+	+	Y	-	1	N	SKBR3_13_2_1	3	0.981735159817352	1.71428571428571	1	3	1	N	N	0.981735159817352	0.9	7	0.968506656869764	1.5065659106863	1.5065659106863	0.968506656869764	2	-	0	0.60524179975777
83782	CTGTTTATTTGGCAGTGTGCCGGAAAGGGTGATGGACTTAGCATTCACAGACGACACCACACAC|ACACCAGGGGAACCAAGAGAACCACGTAGAATCCTCAACCGTGCGGACCATCAACCTTCGAGAAATTCCAGTTGTCTTTTTCCCAGCCGCATCCTGCCTGTAGATGGCCGGGGAAGGCTCTAGAAAAGGGGCGCATTGCGATCCAAC	2	0.588406245585484	0.386241008618129	0.580811673976624	N	N	3.49843365026151	3.3463227663879	3.3463227663879	splitr	11	0.171875	0.171875	0	N	0.234375	N	N	37145	8986	ENSG00000149925	ENSG00000169100	-	+	16	X	30081741	1511626	utr3p	utr3p	ALDOA	SLC25A6	30064444	1505045	+	-	0.171875	30081658	1505465	-	+	Y	-	1.51562695594147	N	SKBR3_13_2_1	2	0	1.33333333333333	1	1	1	N	N	0	0	3	0.844339136758256	0.91056181415106	0.91056181415106	0.844339136758256	3	-	628.666666666667	0.60524179975777
57836	CCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATT|GCATACTCCTCAATTACCCACATAGGATGAATAATAGCAGTTCTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTATCCTAACTACTACCGCATTCCTACTACTCAACTTAAACTCCAGCACCACGACCCTACTACTATCTCGCAC	1	1	0.447538936456759	0.5	N	N	3.53039946453785	3.53465553479678	3.53039946453785	splitr	25	0	0	0	N	0.0645161290322579	Y	N	93473	24767	ENSG00000198886	ENSG00000198763	+	-	MT	MT	12137	5511	coding	coding	MT-ND4	MT-ND2	10760	4470	+	+	0	11617	5007	+	-	N	-	-	N	SKBR3_13_2_1	4	0	4	4	2	4	Y	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
128461	CCGGGATGAATGCCTGGCTCCCCCTTCTTTCCAGCCCTAGCTCAGGCCCATCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGC|CCTGCCTCCTGCCTGCCCCTCTCCCGCCAGACTGTTAGAAAATGGACACTGTGCCCAGCCCGGACCTTGGCAGCCCAGGCCGGGGTGGAGCATGGGCCTGG	3	1	0.121602838876833	0.178044243998848	N	N	3.04011818921209	3.26034641388042	3.04011818921209	splitr	33	0.277227722772277	0.277227722772277	0	N	0.277227722772277	N	N	83603	1185	ENSG00000130600	ENSG00000102882	+	+	11	16	2022700	30134827	intron	utr3p	H19	MAPK3	2016406	30125426	-	-	0.277227722772277	2018892	30126027	+	+	Y	1.53869614155853	1.83627909637802	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.45528090707553	0.703615947298547	0.703615947298547	0.45528090707553	1	7189.5	47.5	0.60524179975777
26788	TCCGCAGGTTCACCTACCGAAACTTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACTGTCTTCTCAGCGTTCCGCCAGGGCAGTGGGCTGACCCAGCGGGCTGATCCGAGGGCCTCACTAAACCATCCAATCAGGAGTAGCGACTGCAGTGTGTACAAAGGGCAGGGACTTCATGCAAGCTTATGACCAGCACTTACTGGGAATTCC|TCGGTCATGGGGAATAATTGCAATCCCCAATCCCCATCACGAATAGGGTTCA	3396	0.848028105598515	0.870855041588009	0.727528022552079	N	Y	3.65591337975064	3.30232144676095	3.30232144676095	splitr	267	0.461538461538461	0	0.704918032786885	N	0.596153846153846	N	N	1	0	ENSG00000163046	ENSG00000213285	+	-	2	5	133015542	180899431	intron	upstream	ANKRD30BL	AC138031.1	132905164	180898964	-	+	0.557692307692308	133012144	174541792	+	-	Y	0.81549815498155	-	N	SKBR3_13_2_1	3	1	1.32786885245902	1	17	1	N	N	1	0.990196078431373	61	0.728449451320848	0.844339136758256	0.844339136758256	0.728449451320848	1	0	-	0.60524179975777
141749	TAGTAGCTGTGGAGGAAGATGCAGAGTCAGAAGGTGAAGAGGAGGAGGATGTGAAACTCTTAAGTATAACTGGAAAGCAGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCTGCTGAGGAAGATGATGATGATGATGATGATGACGATGAAGAAGATGAAGATGA|AGCGCCTGAGAAAGAAGTTTGCCCAAAAGATGCTTCGAAAGGCAAGGAGGAAGCTTATCTATGAAAAAGCAAAGCACTATCACAAGGAATATAGGCAGATGTACAGGACTGAAATTCGAAT	1	0.913570617737712	0.899266171301115	0.897571427984624	N	N	2.3450396197309	3.1825606798934	2.3450396197309	splitr	51	1.11022302462516e-16	0	0	N	0	N	N	0	107	ENSG00000138315	ENSG00000182578	-	-	10	5	74692791	149492935	intron	intron	OIT3	CSF1R	74653339	149432854	+	-	1.11022302462516e-16	74677764	149473956	-	-	Y	1	0.525371610097155	N	SKBR3_13_2_1	374	0	329.5	285	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	0	0	5	0.60524179975777
127353	GCCTGGGTGGAGCTGTCCCAGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCA|TGTGAACAGCAGTTGAACATGGGTCCCAGGTGAACAGCAGT	169	0.00084429691024236	0.251025433968076	0.777182965904673	N	N	3.43681151080804	3.34785034969775	3.34785034969775	splitr	73	0.292682926829268	0	0.565217391304348	N	0.780487804878049	N	N	0	0	ENSG00000251948	ENSG00000252318	-	+	19	2	24184165	133038738	intron	intron	AC092279.1	AC097532.1	24184075	133038647	-	-	0.536585365853659	24184079	133038650	-	+	Y	1	1	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	1	23	0.687060277950346	0.612559765883441	0.687060277950346	0.612559765883441	2	0	0	0.60524179975777
137369	CTGGAGCCTGAGTCCGCTGCACGGAGACTCTGGTGTGGGTCTTGACGAGGTGGTCAGTGAACTCCTGATAGGGAGACTTGGTGAATACAGTCTCCTTCCAGAGGTCGGGGGTCAGGTAGCTGTAGGTCTTAGAAATGGCATCAAAGGTG|GCCTTGGGCATGAGCCTGGGTGGAGCTGTCCCAGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCAGTTGAAGATGGGT	1	1	0.375556752806067	0.399915574091196	N	N	3.42849770938305	3.23424395875957	3.23424395875957	splitr	7	0.0598290598290597	0.0598290598290597	0	N	0.196581196581196	N	N	34301	0	ENSG00000140988	ENSG00000251948	-	+	16	19	2014861	24184165	coding	upstream	RPS2	AC092279.1	2012061	24184075	-	-	0.0598290598290597	2012264	24184182	+	+	Y	-	-	N	SKBR3_13_2_1	44	1	25	10	3	1	N	N	0	1	3	1.24167520111508	0.538059253816536	1.24167520111508	0.538059253816536	2	-	-	0.60524179975777
122651	GGAATGACCTTATATAGCTACGGCATGCTGCTCCCATGTGGGGTAGACCAGTTCCATGGCACTGAATATGTGTGCTGCCCTCAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAGAGGAAGATGAAGAGGAAGAGGAAGAGGAAGATGAAGAGGAAGACT|GAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAA	5	0.87689033370646	0.513673612676347	0.565110920192527	N	N	2.49476703196392	1.91687165141613	1.91687165141613	splitr	59	0	0	0.4	N	0.149425287356322	N	N	5174	0	ENSG00000084234	ENSG00000253128	+	-	11	14	130014699	107281252	coding	downstream	APLP2	IGHV4-80	129939732	107281000	+	-	0	129991689	48240733	+	-	Y	-	-	N	SKBR3_13_2_1	4	1	2.4	1	4	1	N	N	0.237762237762238	1	5	1.08439634230717	0.596004096535239	1.08439634230717	0.596004096535239	3	-	-	0.60524179975777
115314	TATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACCTCCATCATCACCTCAACCCAA|TACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAGCTGCTGGCATCACTATACTACTAACAGACCGCAACCT	2	0.748089010690316	0.572228613671423	0.790699370883283	N	N	2.8240180537267	3.54296933622177	2.8240180537267	splitr	7	0	0.1	0	N	0.172727272727273	Y	N	54817	121749	ENSG00000198786	ENSG00000198804	+	-	MT	MT	14148	7445	coding	coding	MT-ND5	MT-CO1	12337	5904	+	+	0	14076	6438	+	-	N	2.73700989869751	-	N	SKBR3_13_2_1	6	0	3.4	1	4	3	Y	N	0	0	5	0.976784491543865	0.951950987521563	0.976784491543865	0.951950987521563	2	478.2	-	0.60524179975777
112738	GGCCTCGATCAGAAGGACTTGGGCCCCACACGAGCGGCGCCGGGGAGTGGGTCTTCCGTACGCCA|CACGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTT	1	0.370975213236674	0.311204357582937	0.306030290211129	N	N	3.48167806633553	3.5963175270436	3.48167806633553	splitr	0	0	0	0.5	N	0.0923076923076924	N	N	0	0	ENSG00000141161	ENSG00000226958	+	+	17	X	33516364	108297792	intron	intron	UNC45B	RN28S1	33474836	108297361	+	-	0.153846153846154	33478340	108297643	+	+	Y	1	1	N	SKBR3_13_2_1	4	1	4	4	2	2	N	N	1	1	2	0.778116459365451	0.827783467410055	0.827783467410055	0.778116459365451	1	0	0	0.60524179975777
47509	CCATGATGGATAAGATTGAAAGAGTGAGGAGAAGGCTTACGTTTAATGAGGGAGAAATTTGGTATATGATTGAGATGGGGGCTAGTTTTTGTCATGTGAGAAGGAGCAGGCCGGATGTCAGAGGG|GGTCACATGGATGAGGAGAATGACGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACACGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAGACAAGC	2	1	0.935695919090345	0.0375810925093224	N	N	3.32423818963975	3.59528445727371	3.32423818963975	splitr	1	0	0	0	N	0.032	N	N	0	0	ENSG00000225630	ENSG00000218227	-	-	1	5	566063	177483195	intron	intron	RP5-857K21.8	RP11-889L3.1	565020	177482605	+	+	0	565385	177482880	-	-	Y	1	1	N	SKBR3_13_2_1	22	0	16	4	3	2	N	N	0	0	3	0.786394294039552	0.827783467410055	0.827783467410055	0.786394294039552	3	0	0	0.60524179975777
130758	GCACTTTGGGAGGCCGAGGTGGGCAGATTACTTGAGGTCAGGAGTTCAAAACCAACCTGGCCATCATGGTGAAACCCCGCCCTACCAAAAATACAAAAAATTAGTGGGGCGTGGTGGTGTATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAAGAGGCAGAGGGTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAACCTGGGCGACAGAGCAAGACTCT|GGGAAAAAAAAAAAAAAAAAAAAAAAAAAACCTCAACAAATTCCTCCAGT	1	1	0.899266171301115	0.897571427984624	N	Y	3.46145674063593	1.64734087996324	1.64734087996324	splitr	0	0.4	0.56	1	N	0.76	N	N	683	0	ENSG00000143376	ENSG00000220804	-	-	1	2	151671567	243102304	utr3p	upstream	SNX27	AC093642.5	151584541	243030784	+	+	0.0200000000000002	151669149	60794938	-	-	Y	-	-	N	SKBR3_13_2_1	710	1	392	74	2	1	N	N	1	0.450980392156863	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	2	-	-	0.60524179975777
119114	AACGAGAAGGAGACCATGCAAAGCCTGAACGACCGCCTGGCCTCTTACCTGGACAGAGTGAGGAGCCTGGAGACCGAGAACCGGAGGCTGGAGAGCAAAATCCGGGAGCACTTGGAGAAG|CTGGAGAGCGGGAAGACAGGCAGTGCTCGGGGAGTTGCAGCAGGACGTCACCAGGAGGGCGAAGCGGCCACGGGAGGGGGGCCC	1	0.568846524554264	0.447538936456759	0.5	N	N	3.4210491438586	3.31229081257178	3.31229081257178	splitr	6	0	0	0	N	0.202380952380952	N	N	31732	83603	ENSG00000111057	ENSG00000130600	+	-	12	11	53346684	2022700	coding	intron	KRT18	H19	53342655	2016406	+	-	0	53343311	2018214	+	+	Y	-	-	N	SKBR3_13_2_1	5	0	5	5	2	1	N	N	0	0	2	0.827783467410055	0.703615947298547	0.827783467410055	0.703615947298547	1	-	-	0.60524179975777
134655	AGTGGCCGAGGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTGGACTCTTGGCGTGTGGGAAGGGATGCTTTCTCTTTGTCGCCCACTCTTCATTCCTGTTTCTCCTCAGTTCCCCTGTGCAGATGGG|CAAAGATGAAGTTGTCAGGCCGGAAAAGCTGCCCAAAAGGCCCAGACCGCACGCTGTCCATGGTGCCTGGCTCTAAGTCCACCAGGGCGGCCC	2	0.95156169173627	0.935695919090345	0.0727055885476373	Y	Y	3.22167408707565	3.33577499155378	3.22167408707565	splitr	247	1	0.0107526881720431	0	Y	1	N	N	1753	249	ENSG00000141385	ENSG00000176014	+	+	18	18	12377253	12326568	utr3p	coding	AFG3L2	TUBB6	12328943	12308070	-	+	0	12329145	12311052	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	2	0.827783467410055	0.695338112624446	0.827783467410055	0.695338112624446	4	-	-	0.60524179975777
89475	GAAGATCAGCACTGTGGTGAGCTCCAAGGAAGTGAATAAGTTTCAGATGGCTTATTCAAACCTCCTTAGAGCTAACATGGATGGGCTGAAGAAGAGAGACAAAAAGAACAAAACTAAGAAGACCAAAGCAGCAGCAGCAGCAGCAGCAGCAGCACCTGCCGCAGCAGCAACAGCACCAACAACAGCAGCAACAACAGCAGCAACAGCAGCA|ACAGCAGCAGCAACAACAGCAGCAACAACAGCAGCGGGGAACAGTTGAGTAAAACCAA	1	1	0.704121951840997	0.776581847210919	N	N	2.34878425159547	2.61228018278236	2.34878425159547	splitr	1	0	0	0	N	0.155172413793103	N	N	1977	0	ENSG00000140319	ENSG00000144642	+	-	15	3	40331389	30051886	coding	coding	SRP14	RBMS3	40327891	29322473	-	+	0	40328540	29476286	-	-	Y	-	-	N	SKBR3_13_2_1	22	0.607142857142857	10.5	4	4	1	N	N	0.106382978723404	0.607142857142857	4	1.04300716893667	0.463558741749631	1.04300716893667	0.463558741749631	2	-	-	0.60524179975777
79085	TGGAGTGGAGGAGGGTGTGGCTGTGGACATGGTGGCCGTGGGTGTGGTGGTCTGTGATAGGCGGGTCCAGGTGGTAGGGAGGAGGAGGGGATGGCTGTAAAGCTGGTAGCTGTGGGTGGTGGCTGTGCTTCTCAGTGCTGGAAGGGCAGTTGCAGTCCCTGGACTGGAGGAGGGAGTGGCTTTGGAGCTGGTGACTGTGGGTG|AGCTTGTTTGTGTCCCTGTGGGTGGACGTGGTTGGTGATTGGCAGGATCCTGGTATCCGCTAACAGGTCAAAATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAAAA	1	0.141363808903879	0.311204357582937	0.306030290211129	N	N	2.79521422949233	3.01910653502718	2.79521422949233	splitr	27	0	0	0	N	0	N	N	2000	7494	ENSG00000117983	ENSG00000170315	-	-	11	17	1284402	16286054	coding	utr5p	MUC5B	UBB	1244296	16284113	+	+	0	1271570	16284433	-	-	Y	-	-	N	SKBR3_13_2_1	35	0	20	5	2	1	N	N	0	0	2	0.430447403053228	0.827783467410055	0.827783467410055	0.430447403053228	1	-	-	0.60524179975777
44430	GGCCAACAAAGCCAAGCACATACACAAAATGTCTGAACCTGCGGTTC|CTCTCCTACTTACAGGACTCAACATACTAATCACAGCCCTATACTCCCTCTACATATTTACCACAACACAATGAGGCTCGCTCAGCCACCACATTAACAACATAAAACCCTCATTCACACGAGAAAACACTCTCATGTTCATACACCTATCCCCTATCCTCCTCCTATCC	1	0.95156169173627	0.12875022366714	0.0640797573534845	N	N	3.6623288755052	3.33524062522047	3.33524062522047	splitr	10	3.33066907387547e-16	0	0	N	3.33066907387547e-16	N	N	0	31	ENSG00000243092	ENSG00000132570	+	+	12	5	34372611	134343649	upstream	intron	AC140847.1	PCBD2	34372314	134240596	-	+	3.33066907387547e-16	34372645	134262552	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	2	1	2	2	2	2	N	N	1	0	2	0.554614923164737	0.538059253816536	0.554614923164737	0.538059253816536	2	-	1	0.60524179975777
135813	ATTCATTGCCTCAACTATTTGTTCTTTATTTTACGAACAATCTAATAACATTCTTTTAGTTACTTAAAAATGTACAATTAAATTGCTTTTGACTATAGTCACTC|CCGACCAGAGAAAAACCCTGTAGACATTAGTCACTCCTCATTCTGTCTCAAACCCTCTCCCTGACCCTCAGCCCTAGGTAGCAACTACCTAGTGCGATCAACCCCATATGCATAGATTTCCATATTGTG	5	1	0.934930712933681	0.793809624211707	N	N	3.31063524818594	3.4555052531978	3.31063524818594	splitr	6	0.0384615384615384	0	0	Y	0.971153846153846	N	N	82	0	ENSG00000197701	ENSG00000250769	+	-	4	4	88099	49510641	intron	upstream	ZNF595	RP11-241F15.3	53179	49509781	+	-	0.0480769230769229	68717	49512211	+	-	N	3.10857768638369	-	N	SKBR3_13_2_1	7	1	5	3	2	1	N	N	1	1	2	0.496670080446033	0.438725237727329	0.496670080446033	0.438725237727329	1	3	-	0.60524179975777
133561	GACTAAGTTATTGAGCTTGTCCCGAACTTTGCCTTTGGACCACTTCTTCTTTTTGGCCTTGCCCCCGGATTTGTTAACTGGGTCTTTGTCTTTCTTGGCCGACTTTCCAGCATCCTTCTTCTTGTCATCCTTGGGTGGCATTGTGAAGCTCGGACAGCAGCAGCAGACACCGCAGCCTCGCTGAGATGTCGGAC|AAAAAAAAAAAAGACCCAGTGAATTAGCAGGGTGTGAGTCTTATCTTT	2	1	0.152365231029065	0.176595062077575	N	N	3.43824580816205	3.0349223351391	3.0349223351391	splitr	6	0.104166666666667	0	0	N	0.0624999999999997	N	N	0	427	ENSG00000245573	ENSG00000185596	-	+	11	15	27719721	102516768	intron	upstream	BDNF-AS1	WASH1	27528385	102501356	+	+	0.104166666666667	27603174	96335182	-	+	Y	1	-	N	SKBR3_13_2_1	96	0.75	58	20	2	1	N	N	0	0.75	2	0.60428193120934	0.463558741749631	0.60428193120934	0.463558741749631	2	0	-	0.60524179975777
122332	AGTGCTTCTGAAACGTCAGCTGCGCTCCCCTAGGAGTGCTGAGCCCGCGGAACCGCAGCCATGACTGAGGCTGATGTGAATCCAAAGGCCTATCCCCTTGCCGATGCCCACCTCACCAAGAAGCTACTGGACCTCGTTCAGCAGTCATGTAACTATAAGCAGCTTCGGAAAGGAGCCAATGAG|GTTTTGGCCAAACGGATTCGTGTTCTCGAGCTGCTGCGGCGGCCACAAGGAACCCGGATGCCGCTGAGCTTAGCCCGCCAGACTCTCCGGCTTATGGCTCCCAGGCCCAGGCACCCGGCCTGCCTCG	1	1	0.12875022366714	0.0640797573534845	Y	Y	3.78105657260285	3.56232542602083	3.56232542602083	splitr	310	1	0.00787401574803137	0	Y	0.622047244094488	N	N	1985	1	ENSG00000100138	ENSG00000172346	+	+	22	22	42086508	42069998	coding	intron	NHP2L1	CSDC2	42069934	41956767	-	+	0	42076249	42063014	-	+	N	-	1.02632964718273	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	3	1.15889685437408	0.662226773928044	1.15889685437408	0.662226773928044	1	-	0	0.60524179975777
118104	TAGTATGAGGAGGGTTGTGGAGTGGAAGTGAAATCACATGGC|CGGCCTGGAGGTCAGCGTGCAGGGCCCGTTCCTGAGTGTGTCCGTCCTGCTGCCTGAGAAGTTCCTCACCCACACCCACGGCCTCCTCGGGACACTCAACAACGACC	1	0.122481245164157	0.612610548302747	0.693969709788871	N	N	3.29400764533596	3.35463656781289	3.29400764533596	splitr	17	0.0714285714285716	0.0714285714285716	0	N	0.0714285714285716	N	N	3	18054	ENSG00000230021	ENSG00000099994	-	-	1	22	659930	24585078	intron	coding	RP5-857K21.4	SUSD2	536816	24577227	-	+	0.0714285714285716	569849	24583228	-	-	Y	0.828962371721779	0.430574956401719	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.413891733705027	0.75328295534315	0.75328295534315	0.413891733705027	1	0	635	0.60524179975777
85086	ATCGCTGGGTCAATAGTACTTGCCGCAGTACTCTTAAAACTAGGCGGCTATGGTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGC|CACATCTACCATCACCCTCTACATCACCGCCCCGACCTTAGCTCTCACCATCGCTCTTCTACTATGAACCCCCCTCCCCATACCC	1	0.557748642223252	1	0.935920242646516	N	N	3.54144175291192	3.11591748924604	3.11591748924604	splitr	19	0.0588235294117647	0.0588235294117647	0	N	0.188235294117647	Y	N	93473	17065	ENSG00000198886	ENSG00000198888	+	-	MT	MT	12137	4262	coding	coding	MT-ND4	MT-ND1	10760	3307	+	+	0.0588235294117647	11635	3498	+	-	N	-	-	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.413891733705027	0.496670080446033	0.496670080446033	0.413891733705027	2	-	-	0.60524179975777
139038	TCTTTCATGTTGTGGGTTCTGGGAGCCCAGAGGGCAGCCATAGTGTGCCGACTCCGTGGAGGAAGTAAAGAAACAGACCCGCTTCTTGCCGCAGCCCCACCAGCCTAAGGTGTTCAGGAAGGCCG|CCCCTCCTCATTCCAGAACGAACAGCCTGACACATACGCACGGGGCCGCCGCCCCCAGTAGTTGGTCTTGTACATGCGCAGTGTCCTAGTGCCCATCGTCTGTTTCCCCGGCCTTG	1	1	0.526775457519482	0.600084425908804	N	N	3.57336771439491	3.53465553479678	3.53465553479678	splitr	9	0	0.0689655172413794	0	N	0.0689655172413794	N	N	83603	2394	ENSG00000130600	ENSG00000185883	-	-	11	16	2022700	2570219	intron	utr3p	H19	ATP6V0C	2016406	2563871	-	+	0	2017527	2569791	+	-	Y	-	0.868985914058205	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	3	0.836061302084155	0.877450475454658	0.877450475454658	0.836061302084155	1	-	162	0.60524179975777
134505	AAAATTATCCTGGGCAAGGGGAAGTCCAGGCCAAAACTGTCCTTCTCATTAAAAACCCAGGATTAAATTGCAAACTCTGAACTTTTTACAAAGAAAAATGGAAAAACTTTGTATGGTAGCTTCATGTTGAAGTGGTTTTTTGTTTTTGTTTTTGTTTTTTTAATTTGTAAAATCTGGAAAGTTAGCTTGTTCTAATAGGGGCTATGCTCTGCAATTC|CCTTTTTTTTTTTTTTTTTTCCTTTTGGAGACGGAGTTTCTTGTTGCC	2	1	0.808744637905766	0.927294411452363	N	Y	3.38912318237562	2.44877504708174	2.44877504708174	splitr	29	0.479166666666667	0.479166666666667	0.5	N	0.479166666666667	N	N	1023	3	ENSG00000134884	ENSG00000249233	+	-	13	19	107220512	58220562	utr3p	downstream	ARGLU1	AC003006.1	107194021	58208735	-	-	0.479166666666667	107196193	58206900	-	-	Y	-	-	N	SKBR3_13_2_1	98	0.431372549019608	66.5	35	2	1	N	N	0.125	0.431372549019608	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	1	-	-	0.60524179975777
123201	GGGATTTTCTTCCTCCTCTGCCACCCTGAACAGCAAGACCAACACTTCCTGTATTTCCTCCTCCTCCTCCTCCTCAGCCTACTTGATGTGAAGAGAAGGATGAAGACCTCTGTGATGAGCCATCTCCACTTAAT|GACTGTCTCACATTGGCCGGCAACTTGTTCCAGGTATAGTTGTGCCGGATGTG	2	0.47068207365387	0.628320794780147	0.834131705711819	N	Y	3.68208619288838	3.88721439801659	3.68208619288838	splitr	187	0.943396226415094	0	0	N	0.641509433962264	N	N	2217	0	ENSG00000176853	ENSG00000240007	-	+	8	1	124827692	143721519	intron	intron	FAM91A1	BX284650.4	124780696	143719704	+	+	0.641509433962264	124785136	143719779	-	+	Y	0.774568230253067	1	N	SKBR3_13_2_1	4	0.557894736842105	3	2	2	1	N	N	0.557894736842105	0.482142857142857	2	0.786394294039552	0.463558741749631	0.786394294039552	0.463558741749631	3	28	0	0.60524179975777
106347	TAAAGTGCAGCATATTCATTTCCAAGCTAGAGGGTTTTGTGTCCGGATTCAAAGGCCCAGGCTTGAGCTGGGTAGCACCATTTCTTTCATGTTGTGGGTTCTGGGAGCCCAGAGGGCAGCCATAGTGTGCCGACTCCGTGGAGGAAGTAAAGAAACAGACCCGCTTCTT|GCCGCAGCCATGAGCATGCTCGGGCCTCAGAAGAGGCTCGCCTCTAGTGTCCTCCGCTGTGGCAAGAAGAAGGTCTGGTTAGACCCCAGTGAGACCAATGAAATCGCCAATGCCAACTCCC	1	0.955769338327132	0.447538936456759	0.5	N	N	3.56129235625094	3.37973645838739	3.37973645838739	splitr	9	0.0743801652892562	0.0743801652892562	0	N	0.0743801652892562	N	N	83603	0	ENSG00000130600	ENSG00000218227	-	-	11	5	2022700	177483195	intron	upstream	H19	RP11-889L3.1	2016406	177482605	-	+	0.0743801652892562	2017394	177482596	+	-	Y	-	-	N	SKBR3_13_2_1	5	0	4	3	2	1	N	N	0	0	2	0.827783467410055	0.778116459365451	0.827783467410055	0.778116459365451	2	-	-	0.60524179975777
91083	TCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCGGTAAGAGGAGCGTTTTCCACGCCCTTGGGTCTTTCTGACTTGTCCCGGGCGTCGGTCACCAAGGTCACAGGACCCAGGAATTGCGCCCTCCGGCATT|GTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGCAGCCTTTTTAATGCTGCTGGGGTCTTGGTAGAAGCGCGTGCAAAAGCCATTCTGGACTTCCTGGATGCCCTGCTAGAGCTGTCTGAAGAGCAGCAGTTTGTGGCTGAGGCCCTGGAGAAGGGGAC	4	0.903604313523035	0.922486819675656	0.940922325898937	N	N	3.63296356710195	3.64553343878587	3.63296356710195	splitr	3	0	0	0	N	0.318181818181818	N	Y	485	5095	ENSG00000147687	ENSG00000073605	+	-	8	17	125551699	38077313	coding	coding	TATDN1	GSDMB	125500726	38060848	-	-	0	125551169	38062238	-	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	6	Y	N	0	0	5	1.09267417698127	0.960228822195664	1.09267417698127	0.960228822195664	4	-	-	0.60524179975777
70759	ATGAATGAAGTGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTTTGTTATAGTTTTTTATTTTTATGGGCTTTGGTGAGGGAGGTAG|GTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAG	4	0.0242216387816351	0.733432666307043	0.46110163947934	N	N	2.81407161585482	3.588962247475	2.81407161585482	splitr	9	0.0895522388059702	0.0895522388059702	0	N	0.238805970149254	N	N	3	0	ENSG00000230021	ENSG00000252318	-	+	1	2	659930	133038738	intron	intron	RP5-857K21.4	AC097532.1	536816	133038647	-	-	0.0895522388059702	569017	133038708	-	+	Y	0.828962371721779	1	N	SKBR3_13_2_1	4	1	4	4	3	3	N	N	0	1	3	0.852616971432356	0.538059253816536	0.852616971432356	0.538059253816536	3	0	0	0.60524179975777
109452	TATCCGTGTCCTCCGCCCGCTTTGTGTCCTCGTCCTCCTCGGGGGCCTACGGCGGCGGCTACGGCGGCGTCCTGACCGCGTCCGACGGGCTGCTGGCGGGCAACGAGAAGCTAACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGCGGCCAACGGCGAGCTAGAGATTCTTGGTGCCACCATTGAGAACTCCAGGATTGTCCTGCAGATCGACAA|CGCCCCCCCCCCCCCCCAGCTCCTACAAGACCCTGGGTGGAAGT	1	0.830016054389531	0.311204357582937	0.306030290211129	N	N	3.72146071989581	2.90456036027495	2.90456036027495	splitr	5	0.0909090909090913	0.0909090909090913	0	N	0.363636363636364	N	N	58670	50	ENSG00000171345	ENSG00000144668	+	-	17	3	39684560	37865005	coding	intron	KRT19	ITGA9	39679869	37493606	-	+	0	39681476	37494605	-	-	Y	-	0.681462803211524	N	SKBR3_13_2_1	1	0.48	1	1	0	1	N	N	0	0.48	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	1	-	0.5	0.60524179975777
120094	ATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACCAAAAA|AAAAAAAAAGTTAGCCAGACGTTGTGGCGGGTGCAGAGTCTGAGGGAGGCGAATTGCTTCAACCTACCTGGAAGGTGGAGGTTGCAGTGCACTGCAGCCTGGGCGACAGAGTGAGACTCTGTCTCCGAAAATAAATAAATAAATAACATTCTTTAACATGGGAAGAAAAAAAATTCAATCCTATTACAAACACAGAAAT	1	0.303368718173829	0.899266171301115	0.897571427984624	N	Y	3.12279699331701	3.3070415253363	3.12279699331701	splitr	247	0	0	0	N	0.0208333333333331	N	N	507	0	ENSG00000239789	ENSG00000198398	-	-	7	3	56024192	190167665	utr3p	downstream	MRPS17	TMEM207	56019512	190146444	+	-	0	56023308	190142561	-	-	Y	-	-	N	SKBR3_13_2_1	82	1	36.3333333333333	12	3	1	N	N	1	0.721393034825871	3	0.562892757838837	1.07611850763307	1.07611850763307	0.562892757838837	2	-	-	0.60524179975777
107426	GTTTTCCAAAATATATTTGCAAATGGACAAAGTGGGTGTGGAGAAGGACCCCCCACACTTGCCTCCCCATACAACACCCATTCTCCCCCTGGGTCTTTATTTCATCTTTAAAAAAACAAAACAAAAAAAGTAAAAACTAAACAGAAAAGCACTCTGTACAAAGCCTGGATACTGACACCATTGCTGTTCCTTCCTCATGGGGGGCAGTACTAGGTTTCAGGGACAGTCTCTGAATGGGTCGCTTTTGTTCTTAGACACTCCCTTAGGGCCGCTTCCCCTCTCAGGCCAGCTTCCCTAAG|GGAGTGTTTAACAACAAAGAATCAACTCGCCCTGAAAAATGGATGGTACTGAAACATTGGGCCCATACCCGGCCATTGCCAGCAGTTGAGAGTGGATGGGAGTGGTGAGGGTGGTCGCTCCCGCTGGAGCCCCGAGGATGCTATGCTGCTATGAGTGGGAGGACCGCTGCAATGAGCCTTGAAGCCTTGGGCATGAGCCTGGGTGGAGCTGTCCCAGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCAGTTGAAGATGGGTC	1	1.70127584512506e-11	0.467532148991838	0.526369772984128	N	N	3.05678564485542	3.43044944821597	3.05678564485542	splitr	6	0	0	0	N	0	N	N	74211	0	ENSG00000141736	ENSG00000251948	-	+	17	19	37884915	24184165	utr3p	upstream	ERBB2	AC092279.1	37844393	24184075	+	-	0.0133779264214047	37884612	24184365	-	+	Y	-	-	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	0	1	2	0.827783467410055	0.504947915120133	0.827783467410055	0.504947915120133	2	-	-	0.60524179975777
138299	ACCTGAAAGGAATGTTCCTGTCGGTGGCTGCCGGGGACAGGGTCTCCATCATGCTGGCATCAGGGGCCGGCCTGGAGGTCAGCGTGCAGGGCCCGTTCCTGAGTGTGTCCGTCCTGCTGCCTGAGAAGTTCCTCACCCACACCCACGGCCTCCTCGGGACAC|GTGATGGGAAGCTGGTGTCTGAGTCCTCTGACGTCCTGCCCAAGTGAACAGCTGCGGCAGCCCCTCCCAGCCTACCCCTCCTGCGCTGCCCCAGAGCCTGGGAAGGAGGCCGCTATGCAGGGTAGCACTGGGAACAGGAGACCCACCTGAGGCTCAGCCCTAGCCCTCAGCCCACCTGGGGAGTTTACTACCTGGGGACCCCCCTTGCCCATGCCTCCAGCTACAAAACAATTCAATTGCTTTTTTTTTTTGGTCCAAAATAAAAC	1	6.8388726793531e-06	0.254583648908217	0.223418152789081	N	N	3.28296535696188	3.36460593362372	3.28296535696188	splitr	5	0.0308641975308643	0.0308641975308643	0	N	0.0493827160493827	N	N	18054	64916	ENSG00000099994	ENSG00000170421	+	+	22	12	24585078	53298868	coding	coding	SUSD2	KRT8	24577227	53290971	+	-	0.0308641975308643	24583322	53291258	+	+	Y	-	0.915290057108772	N	SKBR3_13_2_1	3	0	2.5	2	2	1	Y	N	0	0	2	0.546337088490636	0.75328295534315	0.75328295534315	0.546337088490636	2	-	3231.5	0.60524179975777
135230	GGGTCGAAGAAGGTGGTGTTGAGGTTACGGTCTGTTAGTAGTATAGTGATGCCAGCGGCTAGGACTGGGAGAGATAGGAGAAGTAAGACTGCTGTGATTAGGACGGATCAGACGAAAAGGGGCGTTTGGTATTGGGTTATGGCAGGG|GGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGC	6	1	0.778181841349716	0.611376558801704	N	N	3.36344488277784	3.65488030998075	3.36344488277784	splitr	19	0.024793388429752	0	0	N	0	Y	N	0	0	ENSG00000237973	ENSG00000162669	-	+	1	1	567996	91870426	intron	intron	RP5-857K21.6	HFM1	566454	91726323	+	-	0.024793388429752	566972	91852941	-	+	N	1	1	N	SKBR3_13_2_1	4	1	2.63636363636364	2	11	2	N	N	0	1	11	1.16717468904818	1.26650870513738	1.26650870513738	1.16717468904818	1	0	0	0.60524179975777
77502	CCTAAATAAATTAAAAAAACTATTAAACCCATATAACCTCCCCCAAAATTCAGAATAATAACACACCCGACCACACCGCTAACAATCAATACTAAACCCCCATAAATAGGAGAAGGCTTAGAAGAAAACCCCACAAACCCCATTACTAAAC|TCACACTCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTCATCCAAACCCCCTGAAGCTTCACCGGCGCAGTCATTCTCATAATCGCCCACGGGCTTACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTACGAACGCACTCACAGTCGCATCATAATCCTCTCTCAAGGACTTCAAACTCTAC	1	3.62091739368667e-05	0.254583648908217	0.223418152789081	N	N	3.11704384497176	3.22060116451241	3.11704384497176	splitr	10	0.00662251655629154	0.00662251655629154	0	N	0.00662251655629154	Y	N	19641	93473	ENSG00000198695	ENSG00000198886	-	-	MT	MT	14673	12137	coding	coding	MT-ND6	MT-ND4	14149	10760	-	+	0.00662251655629154	14642	11496	+	-	N	-	-	N	SKBR3_13_2_1	3	0	2.5	2	2	4	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
18328	CCATGTGTTGCTACCATGGTAATCCTGCT|TCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATC	1	3.24100659837077e-05	0.526775457519482	0.600084425908804	N	N	3.49916954766151	3.33528047801382	3.33528047801382	splitr	0	0.172413793103448	0	0.833333333333333	N	0.793103448275862	N	N	0	0	ENSG00000243092	ENSG00000162669	-	-	12	1	34372611	91870426	upstream	intron	AC140847.1	HFM1	34372314	91726323	-	-	0.172413793103448	34372657	91852838	-	-	Y	-	1	N	SKBR3_13_2_1	2	1	1.16666666666667	1	1	1	N	N	1	1	6	0.471836576423731	1.01817366491437	1.01817366491437	0.471836576423731	1	-	0	0.60524179975777
26036	CGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTATGGAACTGAGGCCATGATTAAGAGGGACAGCTGGGGGCATTTGTATTGCACCGCTAGAGGTGAAATTCTTGGACCGGCGCAGTTTGGACCAGAGTGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAATGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTGGTAGTTCTGACCATAAACGATGCCGACTGGCAACGTGGCGGTGTTATTCCCATGACCCGCTGGGCAGCTTCCAAGAAACCAAAGTCTTTGGGTT|CTTGGAAGCTGCCCAGCGGGTCATGGGAATAACACCGCCACATCGCCAGTTGGCATCGTTTATGGTCGGAATTACAACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCTAAACTGCCAGTCCAAGAATTTCACCTCTAGCGGTGCAATATGAATGCCCCCGGCCGTCCCTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAAT	2	1.08336095411755e-12	0.332952788415832	0.5	N	N	3.36241181300795	3.67320333000993	3.36241181300795	splitr	16	0	0	0	N	0	N	N	1	1	ENSG00000256642	ENSG00000163046	+	-	16	2	33962503	133015542	upstream	intron	NCRNA00273	ANKRD30BL	33961052	132905164	-	-	0	33963657	133012641	+	-	Y	-	0.81549815498155	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	1	2	0.827783467410055	0.75328295534315	0.827783467410055	0.75328295534315	2	-	0	0.60524179975777
139012	TATTCAAAGAACTGATGAAGAAACAACTGATAATCAAGAAGGCAGTGTGGAGTCATCTGAAGAGGGTGAAGACCAAGAACATGAAGATGATGGTGAAGATGAAGATGATGAAGATGATGATGAT|GATGAAGAAGATGAAGATGAAGAAGATGATGAATAAGTTGGTTCTAGCGCAGTTTTTTTTTTCTTGTCTATAAAGCATTTAACCCCCCTGTACACAACTCACTCCTTTTAAAGAAAAAA	3	1	0.586398215173431	0.451731126833041	N	N	2.39224612817561	2.61272126315983	2.39224612817561	splitr	70	0.226890756302521	0.226890756302521	0	N	0.226890756302521	N	N	12701	108	ENSG00000156802	ENSG00000128294	+	-	8	22	124428590	26992681	coding	intron	ATAD2	TPST2	124332090	26921458	-	-	0.226890756302521	124382191	26957092	-	-	Y	-	3.64863201999984	N	SKBR3_13_2_1	4	0	3	2	2	1	N	N	0	0	2	0.44700307240143	0.529781419142435	0.529781419142435	0.44700307240143	2	-	2.5	0.60524179975777
18970	CCTTCTGGTGGGTTTGTGGTCTCGCTGGCTCAGGAGTGAAGCTGCAGACCTTCGTGGTGAGTGTTAACAGCTCTTAAGGCAGCGCGTCTGGAGTTCTTCGTTCCTCCTGGTGGGCTCGTGATCTCGCTGGCTTCAGGAGTGAAGCTGCAGACCTTTGTGGTGAGTGTTACAGCTCATAAAAGCA|ATGTAGACTCAAAGACTGAGCAGTAGCAAGATTTATTGCAAAGAGCA	1	1	0.526775457519482	0.600084425908804	N	Y	3.60103760561896	3.46232197653647	3.46232197653647	splitr	231	0.872340425531915	0.638297872340426	1	N	0.638297872340426	N	N	69	0	ENSG00000196757	ENSG00000214894	+	-	19	6	12061588	30798436	intron	intron	ZNF700	AL662797.1	12035900	30766431	+	-	0.872340425531915	12051407	30783213	+	-	Y	0.859221117810005	1	N	SKBR3_13_2_1	6	1	4	2	2	1	N	N	1	1	2	0.496670080446033	0.546337088490636	0.546337088490636	0.496670080446033	1	3.5	0	0.60524179975777
123792	CAGTCGGCATCGTTTATGGTCAGAACTACCACGGTATCTGATCGTCTTCGAACCTCCGACTTTCATTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCACTCTGGTCCAAACTGCGCCGGTCCAAGAATTTCACCTCTAGCGGTGCAATACAAATGCCCCCAGCTGTCCCTCTTAATCATGGCCTCA|CGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACCCACTAATAGGGAACG	1	0.0268461933675116	0.375556752806067	0.399915574091196	N	N	3.37126417066287	3.62514427921692	3.37126417066287	splitr	7	0	0	0	N	0.298913043478261	N	N	1	0	ENSG00000256642	ENSG00000162669	-	+	16	1	33962503	91870426	upstream	intron	NCRNA00273	HFM1	33961052	91726323	-	-	0	33963402	91852974	-	+	Y	-	1	N	SKBR3_13_2_1	6	1	4.5	3	2	1	N	N	1	1	2	0.703615947298547	0.827783467410055	0.827783467410055	0.703615947298547	2	-	0	0.60524179975777
133041	AAGCTAGAGGGTTTTGTGTCCGGATTCAAAGGCCCAGGCTTGAGCTGGGTAGCACCATTTCTTTCATGTTGTGGGTTCTGGGAGCCCAGAGGGCAGCCATAGTGTGCCGACTCCGTGGAGGAAGTAAAGAAACAGACCCGCTTCTTGCCGCAGCCCCACCAGCCTAAGGTGTTCAGGAA|GGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAGCGCCACACTAGCAATATCAACTATTAACCTTCCCTCTACACTTATCATC	1	0.485714371028907	0.899266171301115	0.897571427984624	N	N	3.64400585547602	3.54313717009112	3.54313717009112	splitr	10	0.0825688073394495	0.0825688073394495	0	N	0.0917431192660551	N	N	83603	3	ENSG00000130600	ENSG00000230021	-	-	11	1	2022700	659930	intron	intron	H19	RP5-857K21.4	2016406	536816	-	-	0.0825688073394495	2017522	569543	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	3	7	N	N	0	0	3	0.587726261861139	0.860894806106457	0.860894806106457	0.587726261861139	2	-	0	0.60524179975777
56032	GAGACGCCCCTGCTAACGGGAATGCTGAGAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACT|AAAAAAAAAAAAGGCCGGCGCGGTGGCTCATGCCTGTAGTCCCAG	8	0.127557728359011	0.059876086506749	0.133037440763108	N	Y	3.23999710710482	3.18768198605288	3.18768198605288	splitr	315	0.355555555555556	0.355555555555556	0	N	0.488888888888889	N	N	14698	31	ENSG00000187514	ENSG00000232938	+	+	2	17	232578251	81188573	utr3p	upstream	PTMA	AC139099.1	232571605	81174666	+	+	0.355555555555556	232577586	28997196	+	+	Y	-	-	N	SKBR3_13_2_1	56	0.82	37.5	19	2	2	N	N	0.203389830508475	0.82	2	0.488392245771932	0.413891733705027	0.488392245771932	0.413891733705027	2	-	-	0.60524179975777
24239	AGCGCCGAGGCGCGGCCGGGGGTGCGGGCGCGGCCCCCGCCCCGAGGAGCGAGTGCCCATTGCCCAGCCCGGTGCGGGGTCGGCGGAGACCGAGGCTCTAACCCCTCGGGGGCAGCGCGGCAGAGCCGAGAAGG|AGAAGGGGAAAATAATGTGACTACCTCTGGCCAAAGCACTGAATTCCACTTCAAGACCCACCTTTTCCCTCAGCTACAATGACTGGCA	1	0.725682129830147	1	0.935920242646516	N	N	3.25360004855864	3.51001030496889	3.25360004855864	splitr	3	1.11022302462516e-16	0	0	N	0	Y	N	430	799	ENSG00000140396	ENSG00000182307	-	+	8	8	71316040	146281416	intron	upstream	NCOA2	C8orf33	71021997	146277764	-	+	1.11022302462516e-16	71315432	91213277	-	+	N	4.18588703279348	-	N	SKBR3_13_2_1	1	0.264705882352941	1	1	0	1	N	N	0.264705882352941	0.15625	3	1.11750768100357	0.529781419142435	1.11750768100357	0.529781419142435	1	0.333333333333333	-	0.60524179975777
141710	GATTTTGCTGATAATCTTGATGTTCTTTCCCTTCTCTCCCAGGACCTTCCTAACTTCATGGACATCAGATGCCTTGCGGATGAATGACGCAAACACCATATCAACATCCTGCTCGACCCCAAACTTCAGATCCTGGATGTCCTTCTCCGACACAGCAGGCAAGTCCACAGCAGCCCCAGGAAGGTTCACACCCTTCTTGCTGCCCAAGGAGCCACCATTTTCCACCTCCGTCACCAGGAAGTCGGCACCTTTCTGCTTCACCTGGAGAGAAATAAGCCCATCATCCACGTAG|ATCATAGCCATCATCACCCTCCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACACTACTCCCTATAT	1	0.0434718828110103	0.20555784636729	0.155228020814782	N	N	3.73808832274579	3.1850280470173	3.1850280470173	splitr	21	0.0365853658536587	0.0365853658536587	0	N	0.109756097560976	N	N	21606	0	ENSG00000067225	ENSG00000225630	-	-	15	1	72524163	566063	coding	intron	PKM2	RP5-857K21.8	72491370	565020	-	+	0.0365853658536587	72502057	565860	+	-	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.587726261861139	0.827783467410055	0.587726261861139	3	-	0	0.60524179975777
140851	GTCTGGAATTGGTGGGTTCTTGGTCTCACTGACTTCAAGAATGAAGCCGCGGGCCCTCACGGTGAGTATTACAGTTCTTAAAGGCAGTGTGTCCAGAGTTTGTTCCTTCTGATGTTCAGATGTGTTCGGAGTTTCTTCCTTCTGGTGGGTTCGTGGTCTTGCTGGCTCAGGAGTGAAGCTGCGGGACCTTCGCGGTGAGTGTTACAGCTCTTAAGGTGGCGCATC|TGGAGTCTGTCCCTTCTGATGTTCGGATGTGTTCGGAGTTTCTTCATTCTG	2	1	0.871805782194921	0.947136850676906	N	Y	3.86785830821752	3.24887996998328	3.24887996998328	splitr	276	0.372549019607843	0.11764705882353	1	N	0.215686274509804	N	N	12	799	ENSG00000236882	ENSG00000182307	-	+	5	8	95195837	146281416	utr5p	upstream	C5orf27	C8orf33	95187936	146277764	+	+	0.509803921568628	95188126	144042206	-	+	Y	-	-	N	SKBR3_13_2_1	170	1	104.5	39	2	1	N	N	1	1	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	1	-	-	0.60524179975777
121947	GAGGCGAGCGGGGGCGCGGGTGGCGCGGCGGGACGCGAGCGGCGAGCCGGAGCGCGGAGCCCGGCTCCCGCACCATGGAGGAGGACGACAGCTACG|ATCATTCCATCGGAAAGAGGTCGAAAATGTACAGTAGGCATGCACAAAGGATACCGCCTGGAAAGAAGATGGCGTCCCGCAAGGAAGGTACCGGCTCTACTGCCACCTCTTCCAGCTCCACCGCCGGCGCAGCAGGGAAAGGCAAAGGCAAAGGCGGCTCGGGAGATTCAGCCGTGAAGCAAGTGCAGATAGATGGCCTTGTGGTATTAAAGATAATCAAACATTATCAAGAAGAAGGA	16	1	0.322784334847733	0.253714449979125	N	N	3.39590940049075	3.6035982586987	3.39590940049075	splitr	1	0.0104166666666665	0.0104166666666665	0	N	0.0208333333333334	N	Y	554	11199	ENSG00000108669	ENSG00000147677	+	-	17	8	76778379	117779164	coding	utr5p	CYTH1	EIF3H	76670130	117654369	-	-	0	76778284	117768258	-	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	3	N	N	0	0	27	0.769838624691351	1.97840248711003	1.97840248711003	0.769838624691351	4	-	-	0.60524179975777
74983	GCTCACACCGGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACTTCAGGTCAGGAGTTCGAGACCATCCTGGCCAACATGGTGAAACCCCCATCTCTACTAAAAATACAAAAATTAGC|TGGGCGTGGTGGCACGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAACCGAGATGGTGTCACTGCACTCCAGCCTGGGCAACGAGAGCAAAACTGTCTCAAAAAAAACAAAAACAAAAACAGGGTCATCGGGCCACCCTGGGCTGGTCGACACATGAGGATAGGCGGCTTCCTCA	2	1	0.808744637905766	0.0727055885476373	N	Y	3.26304020570935	3.40847927217468	3.26304020570935	splitr	344	0.416	0.336	0.5	N	0.344	N	N	25	31	ENSG00000164294	ENSG00000232938	+	+	5	17	54462899	81188573	utr3p	upstream	GPX8	AC139099.1	54455946	81174666	+	+	0.0719999999999998	54462713	77730495	+	+	Y	-	-	N	SKBR3_13_2_1	1932	1	970	8	2	1	N	N	1	0.758620689655172	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
124972	TTACGTGAGCGTATAATCCCAAGATCAGTGTTATATTTTACTGGAGAAGCTATTGAAGATGATGATGATGATTATGATGAAGAAGGTGAAGAAGCGGATGAGGGTT|TTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACATGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAAACA	1	0.707799631456424	0.375556752806067	0.399915574091196	N	N	3.09569616354643	3.80144573217181	3.09569616354643	splitr	11	0.02	0.02	0	N	0.12	N	N	4449	129759	ENSG00000187109	ENSG00000108298	+	-	12	17	76478738	37360980	coding	coding	NAP1L1	RPL19	76438682	37356536	-	+	0.02	76443302	37359310	-	-	Y	-	-	N	SKBR3_13_2_1	15	0	10.5	6	2	1	N	N	0	0	2	0.554614923164737	0.827783467410055	0.827783467410055	0.554614923164737	2	-	-	0.60524179975777
109226	TGGCGATCGATCTTCTTAGATTCACGGTATCTTCTGAGCAGCCGGCGCAAAATCCTCATTCTCCTCATCCATGTGACCTTCTCTGGCATTCGGGCATTGGCTGTACCCTTCCGCTTACCTATGCCCATGTGCCT|TCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCGGATTCCACCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGAACGTCACTAATTAGATGACTAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGTCCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCATGTCATCACCCACC	1	0.000587517830173077	0.899266171301115	0.897571427984624	N	N	3.39657174790006	3.60273302279816	3.39657174790006	splitr	2	0.0149253731343282	0	0	N	0	N	N	129759	0	ENSG00000108298	ENSG00000198626	-	+	17	1	37360980	238129359	coding	intron	RPL19	RYR2	37356536	237205505	+	+	0.0149253731343282	37358677	237766593	-	+	Y	-	1	N	SKBR3_13_2_1	6	1	5.5	5	2	1	N	N	0	1	2	0.827783467410055	0.629115435231642	0.827783467410055	0.629115435231642	2	-	0	0.60524179975777
140827	TCACCACCCTTGGGCCACGCCGTCTAGTCCACACCTGAGGAGTTGGTCAGGTAGAAGGGGCGGATGACCGTGCGGAAGCCGTTGAAGTGCCCTGCCGGGCAGGGGAAGGAGGA|TTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACACGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAGACAAGCGGATTCTCATGGAACACATCCACAAGCTGAAGGCAGACAAGGCCCGCAAGAAGCTCCTGGCTGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCAGGCAAGTGCCCTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGTTCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGAAATAAAAGCTCCCCCTTTGTCTGTACATAC	2	1.18944466878077e-05	0.258666488296237	0.373143407944048	N	N	3.21232721588077	3.79040344379773	3.21232721588077	splitr	5	0.0176991150442478	0	0	N	0.141592920353982	N	N	18288	0	ENSG00000108679	ENSG00000218227	-	-	17	5	76976061	177483195	coding	intron	LGALS3BP	RP11-889L3.1	76967336	177482605	-	+	0.0176991150442478	76967747	177482906	+	-	Y	-	1	N	SKBR3_13_2_1	4	0	4	4	2	1	N	N	0	0	2	0.827783467410055	0.438725237727329	0.827783467410055	0.438725237727329	1	-	0	0.60524179975777
120350	GGAGCAAGCTCTTTGTGCTTGGCCAGCTTGACGGTATCCACCCATTCGGGGACTTTCAGCTTCCCGGACTTTTTGAGGAAGGCTGCCAGAGCTCTGACGAACTCCTGCTGGTTCACGTCTTTTACAGTAACTCCAGGCATCGTGCGGCCTCCGCGCTGCCAGCCAGGGGAA|CGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCATGGTGAAGAGACATGAGAGGTGTAGAATAAGT	1	0.795928741454303	0.311204357582937	0.306030290211129	N	N	3.38652267650252	3.43577844103815	3.38652267650252	splitr	18	1.11022302462516e-16	1.11022302462516e-16	0.5	N	0.0769230769230769	N	N	9495	0	ENSG00000105372	ENSG00000252197	-	+	19	8	42375482	70602417	utr5p	intron	RPS19	AC091047.1	42363988	70602344	+	-	1.11022302462516e-16	42364329	70602400	-	+	Y	-	1	N	SKBR3_13_2_1	10	1	6.16666666666667	2	6	1	N	N	0	1	6	1.28306437448558	0.60428193120934	1.28306437448558	0.60428193120934	2	-	0	0.60524179975777
19916	AGTATCTCGTATAGATTTCTTCACTGGCGCTTTTTCTTCAGCTTCCTCATCATCAAAATCATCATCATCATCATCTTCATCATCATCCTCTTCATCATCATCGT|CATCATCACCCTCCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACACTACTCCCTATATCTAACAACGTAAAAATAAAATGACAGTTTGAACACACAAAACCCACCCCATTC	2	0.9510959198126	0.808744637905766	0.128734512121114	N	N	2.41567776081201	3.25310553501868	2.41567776081201	splitr	32	0.153846153846154	0.0192307692307691	0	N	0.134615384615385	N	N	14119	0	ENSG00000181163	ENSG00000225630	-	-	5	1	170838141	566063	coding	intron	NPM1	RP5-857K21.8	170814120	565020	+	+	0.153846153846154	170819952	565868	-	-	Y	-	1	N	SKBR3_13_2_1	20	0.355932203389831	13.3333333333333	6	3	1	N	N	0.355932203389831	0	3	0.976784491543865	0.91056181415106	0.976784491543865	0.91056181415106	2	-	0	0.60524179975777
141189	GGCCAATGGCCTGATCCAGGGGGCATGCCATGGCTGAGGGCTGGGCTTGGAGCTGGCAGCAGAGGGCCGGTAGGGAGGCGGCCAAATGCGACGCGAGCGGTCGAGGGGAT|GGGGGAAACAGAGTCGTGGAGGCTTTGAATCTCTCAGAAAAAAGGAAAGACAGGAAAGCTCAGAAACAAAGAGACA	1	0.136147294241825	0.254583648908217	0.223418152789081	N	N	3.23168330567983	3.29703230673212	3.23168330567983	splitr	8	0.0394736842105263	0.0394736842105263	0	N	0.0394736842105263	N	N	24283	83603	ENSG00000197956	ENSG00000130600	-	-	1	11	153508720	2022700	utr5p	intron	S100A6	H19	153507075	2016406	-	-	0.0394736842105263	153508467	2016733	+	-	Y	-	0.895665140396807	N	SKBR3_13_2_1	1	0	1	1	0	2	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	1769.5	0.60524179975777
123795	CAGAGCAAGACTCCAACTCAAAAAAAAAAAAAAAAAAAAAAAAAA|TTTAGAATGAAAATACTGAAGGAAGCCCTCAAGAAGATGGTGTGGAACTAGAAGGCCTAAAACAAAGATTAGAAAAGAAACAGAAAAGAGAACCAGGTATTACAACATTTTTAGAAAAA	1	0.226772256258966	0.899266171301115	0.897571427984624	N	Y	1.88070803776896	3.28189243439864	1.88070803776896	splitr	164	0.644444444444445	0	0	N	0	N	N	315	9342	ENSG00000196935	ENSG00000131747	-	+	12	17	64541613	38574408	utr3p	intron	SRGAP1	TOP2A	64238073	38544768	+	-	0.644444444444445	64538617	38551796	-	+	Y	-	0.928563420950164	N	SKBR3_13_2_1	26	0.411764705882353	16	6	2	1	N	N	0.411764705882353	0	2	0.422169568379128	0.422169568379128	0.422169568379128	0.422169568379128	3	-	163	0.60524179975777
121516	AACTGATTTTCTCTTTCTTTCTCCAGTTCTCCTTGGTCTGTAACAGGAATGCCCCTTACTCAGTAGCAGGCGGACACGGCCATGGGTCAAGACACCCTGCTTCATGGGGAAACCTTGTTTGTCGTTCCC|CAACTAAATACTACCGTATGACCCACCATAATTACCCCCATACTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAAATACAAATTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTT	1	0.87589452313036	0.205558172728075	0.155228020814782	N	N	3.43408302385895	3.0667948634596	3.0667948634596	splitr	3	0.0232558139534885	0	0	N	0.0310077519379846	N	N	15005	3	ENSG00000137154	ENSG00000230021	-	-	9	1	19380252	659930	coding	intron	RPS6	RP5-857K21.4	19375713	536816	-	-	0.0232558139534885	19378892	568921	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	8	0	8	8	3	1	N	N	0	0	3	0.827783467410055	1.02645149958847	1.02645149958847	0.827783467410055	2	-	0	0.60524179975777
135508	AGAAGAAGAAATGATCAAGATTAGATCCTGTGCTGAAAGAGAAACCAAGAAAAAAGATGACATTCCAGAAGAAGACAAAGGAAATGTAAAACAATGTGAAATCAATTATGTAAAGAAATTTCAGAGCTTCCAAGACCACAAACTTAAAATAAGTAAAGAAGACAGTAAAATTCTTAAAAAGGCTCGGAAAGATGGATTTTTGCATGAGACGCTTCTGGACA|GAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAGCCTCCCTGCCTGATTCTTCTGCCTCAGCCTGCCGAGTG	1	0.347214591588854	0.20555784636729	0.155228020814782	N	Y	3.41000685548453	3.56654164348642	3.41000685548453	splitr	206	0.714285714285714	0.0129870129870132	0	N	0.935064935064935	N	N	236	2	ENSG00000109536	ENSG00000238272	+	-	4	1	190884359	173581911	coding	intron	FRG1	RP3-436N22.3	190861943	173524390	+	+	0	190883086	173581783	+	-	Y	-	-	N	SKBR3_13_2_1	36	1	30	24	2	1	N	N	0	1	2	0.620837600557541	0.438725237727329	0.620837600557541	0.438725237727329	2	-	-	0.60524179975777
55107	AACGGTCCTGATGCGTGTGTCCAGGCTTTTTTTTTTTTTTTTTA|CAGACTTCACAGAGAATGCAGTTGTCTTGACTTCAGGTCTGTCTGTTCTGTTGGCAAGTAAATGCAGTACTGTTCTGATCCCGCTGCTATTAGAATGCATTGTGAAACGACTGGAGTATGATTAAAAGTTGTGTTCCCCAATGCTTGGAGTAGTGATTGTTGAAGGAAAAAATCCAGCTGAGTGATAA	4	1	0.144414175972875	0.27895058607173	N	N	2.97044791755717	3.50376264308368	2.97044791755717	splitr	21	0.318181818181818	0	0	N	0.386363636363636	N	N	0	0	ENSG00000121743	ENSG00000251562	+	-	13	11	20735188	65273940	downstream	intron	GJA3	MALAT1	20712394	65265233	-	+	0.318181818181818	20711287	65271794	+	-	Y	-	1	N	SKBR3_13_2_1	37	0	29.5	22	2	1	N	N	0	0	2	0.413891733705027	0.422169568379128	0.422169568379128	0.413891733705027	1	-	0	0.60524179975777
68914	GATCTGCGCCCCAGACATCTGACGGATCTCATTGATTTTGGCGCCTTGACGCCCGATTATGCAGCCAATCAAATCGTTTGGAATGGTGAGTTCATGAGAAGTAGTCTGAGCAGATGCATCCAAACCCCAATAGCCTTTCACCTCTGGAGAGCTGGATTCAATGCCACTGAATCCGGTGTTGCCATGCGTCATGGGAAAATGAGACTGTTGCATTGCCAACTGGTGCAGCTT|GGTCAACTCTAGAAGTGGTCCCTCCAGGTCACAGTTGAGGCACATGGACGAA	9	0.695361570913106	0.726239495179605	0.307605314380219	N	N	3.43933231109443	3.46824295875106	3.43933231109443	splitr	0	0.153846153846154	0.903846153846154	1	N	0.903846153846154	N	N	6880	0	ENSG00000197111	ENSG00000235701	-	-	12	21	53874945	40544032	coding	intron	PCBP2	PCBP2P1	53835525	40543056	+	-	0	53861011	40543381	-	-	Y	-	1	N	SKBR3_13_2_1	4	0.509090909090909	3	2	2	1	N	N	0	0.509090909090909	2	0.678782443276245	0.45528090707553	0.678782443276245	0.45528090707553	2	-	0	0.60524179975777
122244	GTTTTGTGTGTTCAAACTGTCATTTTATTTTTACGTTGTTAGATATAGGGAGTAGTGTG|AAGAAGAGGCGAGAAAGACCCCCCGACAGACCAAAGCCCGTGTGCCGCTGCATCCTGCATCCAGCACCTACCTCCCGCCACTGTCGCCACTGCCACCATGCCCAAGAGAAAGGCTGAAGGGGATGCTAAGGGAGATAAAGCCAAGGTGAAGGATGAACCACAGAGAAGATCCGCAAGGTTGTCTGCTAAACCTCCTCCTCCAAAGCCAGACAGCCCAAGCCTAGAAAGGCCCCTGCAAAGAAGGGAGAGAAGGTACCCAAAGGGAAAAAG	1	0.470460098137837	0.20555784636729	0.155228020814782	N	N	3.0667948634596	2.75080233471144	2.75080233471144	splitr	12	0	0	0	N	0	N	N	0	18	ENSG00000225630	ENSG00000203451	-	+	1	16	566063	90233540	intron	upstream	RP5-857K21.8	AC133919.1	565020	90232651	+	+	0.101694915254237	565925	35037645	-	+	Y	1	-	N	SKBR3_13_2_1	44	0	32	12	3	1	N	N	0	0	3	1.02645149958847	0.918839648825161	1.02645149958847	0.918839648825161	3	0	-	0.60524179975777
136966	CGGCGCAAAATCCTCATTCTCCTCATCCATGTGACCTTCTCTGGCATTCGGGCATTGGCTGTACCCTTCC|TCATGGGGGGCAGTACTAGGTTTCAGGGACAGTCTCTGAATGGGTCGCTTTTGTTCTTAGACACTCCCTTAGGGCCGCTTCCCCTCTCAGGCCAGCTTCCCTAAGGCTTTCAGTACCCAGGATCTGGAAGGAAAGGGCCAAGCTGGGCTGTGGCATCCACTGGACCCTAGAGTCTCATTGGGCAGGGCCTCAGAATCCACAAAGACTCCCCAGTGCTGTTCCTCTTCCAACGAG	1	0.707145076972533	0.163782765099475	0.102428735043176	N	N	3.53039946453785	3.38127338926705	3.38127338926705	splitr	18	0.214285714285714	0.214285714285714	0	N	0.214285714285714	Y	N	129759	74211	ENSG00000108298	ENSG00000141736	-	+	17	17	37360980	37884915	coding	utr3p	RPL19	ERBB2	37356536	37844393	+	+	0.214285714285714	37359248	37884716	-	+	N	-	1.28528718482854	N	SKBR3_13_2_1	10	0	4.66666666666667	2	3	1	N	N	0	0	3	1.10922984632947	0.869172640780558	1.10922984632947	0.869172640780558	1	-	1097.33333333333	0.60524179975777
138288	GCTGACCCTGGCCAGGACCGACCTGGAGATGCAGATCGAAGGCCTGAAGGAAGAGCTGGCCTACCTGAAGAAGAACCATGAGGAGGAA|GTGGGGAACCGAGGGGCAACCAGGGGAAGATGGGGTGCTGGAGGAGAGCTTGTGGGAGCCAAGGAGCACCTTGGACATCTGGAGTCTGGCAGGAGTGATGACGGGTGGAGGGGCTAGCTCGAGGCAGGGCTGGTGGGGCCTGAGGCCAGTGAGGAGTGTGGAGTAGGCGCCCAGGCATCGTGCAGACAGGGCGACATCAGCTGGGGACGATGGGCCTGAGCTAGGGCTGGAAAGAAGGGGGA	1	0.082547215963593	0.311204357582937	0.306030290211129	N	N	3.30119509103522	3.21741801681671	3.21741801681671	splitr	4	0.0454545454545456	0.0454545454545456	0	N	0.056818181818182	N	N	58670	83603	ENSG00000171345	ENSG00000130600	+	+	17	11	39684560	2022700	coding	intron	KRT19	H19	39679869	2016406	-	-	0.0454545454545456	39680790	2019020	-	+	Y	-	11.7740407530776	N	SKBR3_13_2_1	5	0	3	1	1	1	N	N	0	0	2	0.827783467410055	0.819505632735954	0.827783467410055	0.819505632735954	3	-	3469.5	0.60524179975777
132345	GGGATGGGGGTGACATCCTCAATCCGCCCGATCTTCATACCCGAGCGGGCAAGGGCTCTGAGGGCCGACTGGGCCCCAGGTCCAGGGGTCTTGGTCCTATTTCCTCCTGTGGCCCGGAGTTTGATGTGTAGGGCGGTGATACCCAGCTCCTTGCACCTCTGGGCCACATCCTGGGCA|CTCCCACTTATTCTACACCTCTCACGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCCTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCTGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG	1	2.98395755935303e-06	0.899266171301115	0.897571427984624	N	N	3.31233066536513	3.24161281869731	3.24161281869731	splitr	5	0	0	0	N	0	N	N	20474	0	ENSG00000164587	ENSG00000226958	-	+	5	X	149829319	108297792	coding	intron	RPS14	RN28S1	149822753	108297361	-	-	0.0225988700564972	149826445	108297665	+	+	Y	-	1	N	SKBR3_13_2_1	20	1	11.5	3	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
119613	TCCACAAGCTGAAGGCAGACAAGGCCCGCAAGAAGCTCCTGGCTGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGAAATAAAACCTCCCACTTTGTCTGTACATACTGGCCTCTGTGATTACATAGATCAGCCATTAAAATAAAACA|ACCCCATCTCTATCAAAAATACAAAAATTAGAATCCCCGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGTGGGGCCCAAGTCCTTCTGATCGAGGCCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTTGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTACG	1	1.85017736487713e-12	0.899266171301115	0.897571427984624	N	N	3.63974978521709	3.12023634023727	3.12023634023727	splitr	33	0.0042918454935621	0	0	N	0	N	N	129759	0	ENSG00000108298	ENSG00000141161	+	+	17	17	37360980	33516364	utr3p	intron	RPL19	UNC45B	37356536	33474836	+	+	0.0042918454935621	37360967	33478403	+	+	N	-	1	Y	SKBR3_13_2_1	6	0.987654320987654	3.4	1	3	2	N	N	0	0.987654320987654	5	1.06784067295897	1.22511953176688	1.22511953176688	1.06784067295897	2	-	0	0.60524179975777
71657	CCCGCTGCTGCCAGCTACACCTCCGTTGCCCAGGCCCTGGGATCAAACCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTGGTTGCCCCTCGGTTCCCCACTTCCCCAGTTTCCC|TCAATAAACGTAATCCATCACATAAACAGAACCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAGGCCTTCGACAAAATTCAACAGCCCTTCATGCTAAGAACTTCATTGGTTTCCTAGGGTTTATTGTGTGAGCACACCATATATTTACAGTAGGAATGGACGTAGACACACGAGCTTATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAAGTATTTAGCTGACTCGCTACACTCCACGGAAGCAATATGAAGTGATCTGCTGCAGTGCTCTGAGCCCTGG	1	1.02418523118528e-05	0.254583648908217	0.223418152789081	N	N	2.93279931295247	3.07676422927044	2.93279931295247	splitr	0	0	0	0	N	0	N	N	83603	0	ENSG00000130600	ENSG00000220804	-	+	11	2	2022700	243102304	intron	upstream	H19	AC093642.5	2016406	243030784	-	+	0	2019034	49457154	+	+	Y	-	-	N	SKBR3_13_2_1	5	1	4	3	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
81517	CCCTCACTCGGCTTGTCCCCAGATTGGGCTTTGAACTCCTCCAGGGTCTGGTCAAGCTCGTCCTGGGTCACCAGATAGCCACGGTCGTGGCACAGCTGCATGATGGTCTTGCGGATTTTCCAGAGCCGGTACGTCTCCTCCTCGTCGTCCATGGCAGCCT|CCGCCGCCGCCGCCGCCTCTCCTTAGTCGCCGCCATGACGACC	3	0.376794342963288	0.333433116701036	0.595833718556044	N	N	3.55760534744548	3.19077184779274	3.19077184779274	splitr	23	0.372093023255814	0.372093023255814	0	N	0.465116279069768	N	N	1713	3936	ENSG00000099817	ENSG00000167996	-	+	19	11	1095391	61735132	utr5p	utr5p	POLR2E	FTH1	1086578	61727190	-	-	0.372093023255814	1095322	61734931	+	+	Y	-	0.906426326348061	N	SKBR3_13_2_1	10	0.636363636363636	8.5	7	2	1	N	N	0	0.636363636363636	2	0.827783467410055	0.637393269905742	0.827783467410055	0.637393269905742	1	-	258.5	0.60524179975777
95338	GCCTGATGTTCAAACACCTGGTACACAAACCATCGGAGGAGAGAGTAAGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAA|GGTGCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGGGATGAGAAGCTCGGG	2	1	0.51863115005231	0.741210747674579	Y	Y	3.50425715662364	3.44785379918211	3.44785379918211	splitr	315	1	0.0252100840336134	0	Y	0.605042016806723	N	Y	4782	17	ENSG00000171848	ENSG00000163009	+	-	2	2	10271545	10351851	coding	utr5p	RRM2	C2orf48	10262455	10281509	+	+	0	10269281	10281981	+	-	N	-	-	N	SKBR3_13_2_1	2	0.821138211382114	1.5	1	3	1	N	Y	0	0.821138211382114	6	1.60589992677551	1.01817366491437	1.60589992677551	1.01817366491437	4	-	-	0.60524179975777
140648	CAACATCGTTGTCTGGTTTTAGTATCAAGATAATACTGGCTTCATAGAATGAACTGGGGAGTGTTTTTTCCTTTTCTGTTTTTTGGAAGAGTTCTTCACTTGATCTTAGCCAAAATGCCAAGAAGCAATGGAAGAGTTGTTGAAGGAGATATTTTATAGGTTTCTGTATA|CACCTTATACAAAAGTTTATTCAAGACGGATGAAAGACTTAAATGTTACATCTTAAGCCATACAAACCCTAGGAGAAAACCTAGGCAATACCATTCAGGACATAGGCATGGGCAAGGACCTCATGTCTAAAACGCCAAAAGCAAAGGCAACAAAAGCCAATATTGACAAACGGCATCTAATTACACTAAAGAGTTTCTGC	13	1	0.842339870490288	0.707252999732185	N	N	3.18888288969212	3.51935717616377	3.18888288969212	splitr	171	0.0411764705882351	0	0	N	0	Y	N	2719	3150	ENSG00000067167	ENSG00000205176	-	+	8	8	71520622	86575726	intron	downstream	TRAM1	REXO1L1	71485677	86568695	-	-	0.0117647058823529	71492314	86563816	-	+	N	0.194314238584077	-	N	SKBR3_13_2_1	103	1	14.4117647058824	8	17	1	N	N	0.543859649122807	1	17	1.41550972927119	1.61417776144961	1.61417776144961	1.41550972927119	1	7.17647058823529	-	0.60524179975777
138734	TAATTTGACTCAATATGGGAAACCTCACCCGGCCCGGACATGGACAGGATTGACA|GATTGATAGCTCTTTCTCGATTCCACGGGTGGTGGTGCATGGCCTTAGTT	1665	0.00449784055262974	0.830256606070744	0.991738124945024	N	Y	3.29872772391132	3.63552422018169	3.29872772391132	splitr	105	0.9	0	0.333333333333333	N	0.92	N	N	0	1	ENSG00000225840	ENSG00000163046	+	+	Y	2	10036711	133015542	intron	intron	RN18S1	ANKRD30BL	10036113	132905164	-	-	0.94	10036146	133012483	+	+	Y	1	0.81549815498155	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	1	3	0.45528090707553	0.513225749794234	0.513225749794234	0.45528090707553	1	0	0	0.60524179975777
128787	GGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACCCACTAATAGGGAACGTGAGCTGGAGGTTCTATTTCATAGACAAGACTGATGAAATCACTGGCCATTGCTAATTAAACTTGATCTTCAGCCCCTGAATGGATAAGTCATCTCCATTACTTATTCTATAAGATGTGAATGTTTTATTA|AGGGAGATTAGTATAGAGAGGTAGAGTTTTTTTCGTGATAGTGGTTCATTGGATAAGTGGCGTTGGCTTGCCATGATTGTGAGGGGCAGGAGTCAGGTAGTTAGTATTAGGAGGGGGGTCGTTAGGGGGTCGGAGGAGAAGGATAAGGAGCAGCTAAATAGGTTGTTGTTGATTTGGTTGAAAAATAGTAGGGGGATGGTGCTAATAATTAGGCTGTGAGTGGTTGTGTTGATTCAAATTATG	1	9.61547606751783e-07	0.261533274614987	0.233421673643755	N	N	3.33101506018507	2.84909678664747	2.84909678664747	splitr	16	1.11022302462516e-16	0	0	N	0	N	N	0	31	ENSG00000162669	ENSG00000132570	-	-	1	5	91870426	134343649	intron	intron	HFM1	PCBD2	91726323	134240596	-	+	1.11022302462516e-16	91852660	134263422	-	-	Y	1	1.2575464834446	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	1	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	0	1	0.60524179975777
123224	AAACCAAGGTTATGGCACACAGCTTGTGCCAGCGATGAAGGAGAAGTAATTGTTTTTGGTGGATGTGCCAACAACTTGCTTGTCCATCACAGAGCTGCACACAGTAATGAAATACTAATATTTTCAGTTCAACCAAAATCTCTTGTAC|GGCTGGTCCATTCAGGTCCAGGAAAGGGATCACCCCAGGCTGGTGTGGATCTGTCCTTTGCAACGCGAACTGGTACCAGGCAAGGGATTGAAACACATCTCTTCAGAGCAGAGACCAGCAGGGACCTCTCCCACTGGACAAGGAGCATAGTACAGGGT	2	1	0.419771231117896	0.626856592055952	N	N	3.34359427943881	3.36295036923788	3.34359427943881	splitr	4	2.22044604925031e-16	2.22044604925031e-16	0	N	2.22044604925031e-16	N	Y	676	119	ENSG00000165516	ENSG00000172164	+	+	14	8	50249909	121825513	coding	intron	KLHDC2	SNTB1	50234326	121547985	+	-	2.22044604925031e-16	50249312	121561198	+	+	Y	-	2.47840553426323	N	SKBR3_13_2_1	1	0	1	1	0	1	Y	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	4	-	0	0.60524179975777
141649	GACATGGCGTAAGGGTGTGCGTGGTGGGAGCTACCGCCCTCCAGTGGGTGGGGAAATGCTCCAGGAGGAGGGGGCCCAGAGTTTCCGTGATGCTGCTGCTGCTGCTGCTGCTGCTGC|TGCTGCTGGTGTTGCTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCAAGAGCATGCCCTCCTGTCTTACACAC	1	0.376794342963288	0.311204357582937	0.306030290211129	N	N	2.797350727049	3.48015048302568	2.797350727049	splitr	17	0.2	0.2	0	N	0.2	N	N	1841	0	ENSG00000111676	ENSG00000223668	-	-	12	3	7051484	39401413	coding	intron	ATN1	EEF1A1P24	7033626	39400036	+	+	0.2	7045912	39400382	-	-	Y	-	1	N	SKBR3_13_2_1	55	0.328358208955224	34.5	14	2	1	N	N	0.328358208955224	0	2	0.827783467410055	0.463558741749631	0.827783467410055	0.463558741749631	1	-	0	0.60524179975777
99061	AAGTCAGTGAGACCAAGAACCCACCAATTCCGGATACATTTTGGTGACCCAGATGGGACTATTACCTATCGCCAAGCGGTGAGACCACTGCCTATCGCTGAGCGGTGAGACTATCACCTATCGCCAAGCAGT|CAACGGCAGGGGTCTAAGGAGTGACTGCCCAACGTGAGGCTTCAAGATGAGCCAATTACCAATTATGCACGGCGTTTCTCCTTCTCTTCCTTCATTCCCATAGAGAATCCCATTCCTATCTCCTTCGCCAGCCCAAGGCAATGGGCCTCTCCCAGCAACTGGGTGGGCAAGTTTTACCTGCTGGATAGTGT	13	1	0.828217323007277	0.47101461382519	Y	Y	3.81657625693547	3.55553920790569	3.55553920790569	splitr	323	1	0	0	Y	0	N	N	719	3501	ENSG00000104823	ENSG00000104824	+	-	19	19	39322497	39342987	intron	intron	ECH1	HNRNPL	39306068	39327029	-	-	0	39314039	39327518	+	-	N	0.914237290809833	0.799731838659575	N	SKBR3_13_2_1	14	0.411764705882353	3.16666666666667	1	2	2	N	Y	0.411764705882353	0	12	1.12578551567767	1.73834528156112	1.73834528156112	1.12578551567767	2	7.75	35.6666666666667	0.60524179975777
116808	GCGAAGACCATCGGCTGAGGGATTTGTTGGGTTTTTTTTTTTTTTTTTTGGAAG|GTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGCAATCCTC	1	0.072888231487881	0.612610548302747	0.693969709788871	N	N	2.26737793125143	3.54036883034868	2.26737793125143	splitr	29	0.444444444444445	0.351851851851852	0	N	0.537037037037037	N	N	440	0	ENSG00000112941	ENSG00000175061	+	-	5	17	6757161	16367300	intron	intron	PAPD7	NCRNA00188	6714718	16342289	+	+	0.444444444444445	6738045	16344914	+	-	Y	0.311252514009467	1	N	SKBR3_13_2_1	20	1	18	16	2	1	N	N	0	1	2	0.413891733705027	0.480114411097832	0.480114411097832	0.413891733705027	1	11.5	0	0.60524179975777
115193	TGGTTTATGTGAAACCAACAACAGGAACTGTACAGCTGGTCAGGTGAGCTTCACAGCTGCATTACTTCACCAGGATCATCCTTGCTTACTTCCACTGGAGTCCCTCCTGGGGGATATTTATATCCCTTCCACATGGTT|CCTCCTTTAGTGCTTCTACTCCGGTCCTTCCTAGTCTTCTCTTCATAAGTGTCCCCAAGTTTCCTTCCAGGAAGATGGGTCGTGGTTTCCTTGACGCCAATGCGTTTCTGGCCGTGCCCTCGTCACTTGCCCACTCCGGGGTCACGAAGGAG	4	1	0.697119769803096	0.651968193672452	N	Y	3.25832012713399	3.11653998386199	3.11653998386199	splitr	136	0	0	0	Y	0	N	N	22	266	ENSG00000247595	ENSG00000151116	-	+	11	11	18631802	18610294	intron	upstream	RP11-504G3.1	UEVLD	18621334	18552748	+	-	0	18624706	18610543	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	3	1.14234118502588	0.76156079001725	1.14234118502588	0.76156079001725	1	-	-	0.60524179975777
136437	CCCATTTAAAGTTTGAGAATAGGTTGAGATCGTTTCGGCCCCAAGACCTCTAAGGCACTCACATTCCATTGACTGCTGGCGATGGCCGGGTATGGGCCTGATGCTCCAGTGCCATCCATTTTCAGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGTGGATTCTGACTTCCATGGCCACCGTCCTGCTGTCTATATCAACCA|ACACCTCTCACGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTC	1	0.534224320064533	0.899266171301115	0.897571427984624	N	N	3.6769648867289	3.52634173337179	3.52634173337179	splitr	6	0	0	0.5	N	0	N	N	0	0	ENSG00000252666	ENSG00000226958	-	+	19	X	36066721	108297792	upstream	intron	AD000090.1	RN28S1	36066627	108297361	+	-	0.0451127819548873	36066532	108297651	-	+	Y	-	1	N	SKBR3_13_2_1	8	1	6.5	5	2	1	N	N	0.676190476190476	1	2	0.827783467410055	0.662226773928044	0.827783467410055	0.662226773928044	1	-	0	0.60524179975777
128972	ATTAAAGCCTTAAGCACAATTAATTAAAAGTGAAACGTAATTGTACAAGCAGTTAATCACCCACCATAGGGCATGATTAACAAAGCAACCTTTCCCTTCCCCCGAGTGATTTTGCGAAACCCCCTTTTCCCTTCAGCTTGCTTAGATGTTCCAAATTTAGAAAGCTTAAGGCGGCCTACAGAAAAAGGAAAAAAGGCCACAAAAGTTCCCTCTCACTTTCAGT|AAAAAAAAAAAAAAAAGACCCAAAAATAAAAAGCAAAACAAAG	1	1	0.447538936456759	0.5	N	Y	3.08086181322984	1.93237439178073	1.93237439178073	splitr	42	0.558139534883721	0.558139534883721	0	N	0.581395348837209	N	N	18455	0	ENSG00000087460	ENSG00000179133	+	+	20	10	57486247	23633774	utr3p	utr3p	GNAS	C10orf67	57414773	23556124	+	-	0.558139534883721	57486127	23607037	+	-	Y	-	-	N	SKBR3_13_2_1	71	0.835820895522388	37	3	2	1	N	N	0	0.835820895522388	2	0.438725237727329	0.554614923164737	0.554614923164737	0.438725237727329	2	-	-	0.60524179975777
133499	CCGCGGTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCGGCTTGGACCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTTGGGCCGCGGAACACTCAGCTAAGAGCATCGAGGGGGCGCCAAGAGGCAAGGGGCGGGGACGGGCAGT|AACTATGACTCTCTTAAGGTAGCCAAATGCCTAGTCATCTAATTAGTGACGTTCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGTGGAATCCGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCAC	3	0.127557728359011	0.186152620242768	0.319416284894315	N	N	2.89678511507989	3.66848325143457	2.89678511507989	splitr	8	0.0448717948717948	0	0	N	0.0576923076923077	N	N	1	0	ENSG00000256642	ENSG00000198626	-	-	16	1	33962503	238129359	upstream	intron	NCRNA00273	RYR2	33961052	237205505	-	+	0.0448717948717948	33963222	237766410	-	-	Y	-	1	N	SKBR3_13_2_1	8	1	6	4	2	1	N	N	1	1	2	0.538059253816536	0.827783467410055	0.827783467410055	0.538059253816536	2	-	0	0.60524179975777
133975	AGAAGGTGGGTTGCCCAAAGAAGGTGGCGATAAACTCATGGTTCTTGATGTAGTGGATTTTGGCCTGTTTGATGGCT|CCGCGGCGGGTGTTGATGCGATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAAACGGCAGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGAGGCGCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGACTTGGCGGAATCAGCGGGGAAAGAAGACTCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACGTGAGAG	1	0.0125319436984963	0.375556752806067	0.399915574091196	N	N	3.19078119536255	3.26932256271472	3.19078119536255	splitr	9	0	0	0.5	N	0	N	N	3512	0	ENSG00000163932	ENSG00000226958	-	-	3	X	53226733	108297792	coding	downstream	PRKCD	RN28S1	53190025	108297361	+	-	0	53215521	108297359	-	-	Y	-	-	N	SKBR3_13_2_1	5	1	4	3	2	1	N	N	0	1	2	0.488392245771932	0.827783467410055	0.827783467410055	0.488392245771932	2	-	-	0.60524179975777
6390	GCCATAGGGGCCAGAGCTTCTGCCTCCAAAATTTCCTCCCTTCATGGGTCCAAAATTTGAAGACTGATTGTTGTAATTCCCAAAATCATTGTAGCTTCCACCACCTCCAAAATTGCTTCCATCATTACCAAATCCATTATAGCCATCCC|AATTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATTACCACCCAACAATGACTAATCCAACTAACCTCAAAACAAATGATAGCCATACACAACACTAAGGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTT	2	0.0405254697873107	1	0.97388564551795	N	N	3.14484171727181	3.00190987072374	3.00190987072374	splitr	0	0	0	0	N	0	N	N	12277	3	ENSG00000135486	ENSG00000230021	-	-	12	1	54679028	659930	coding	intron	HNRNPA1	RP5-857K21.4	54674488	536816	+	-	0	54676629	569008	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	126	0.291666666666667	72.75	3	4	2	N	N	0.291666666666667	0	4	1.27478653981148	1.30789787850789	1.30789787850789	1.27478653981148	1	-	0	0.60524179975777
124654	TCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTGGTGGTAGCACATACTACGCAGACTCCAGGAAGGGCAGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAACCTGAGAGCTGAGGGCACGGCCGTGTATTACT|CGGAAACCTGAAGGCAGCGGCGGCCTCTCCCAGCCAGGACCTCGCCGGCATCCGGGTCTCCAGGCCCAACCCTGTACCACATAAAGGAAGTCCCCGCTGAGCTA	1	1	0.205558172728075	0.155228020814782	N	Y	3.75847748231475	3.36720643949681	3.36720643949681	splitr	275	0.932692307692308	0	0	N	0.0384615384615384	Y	N	4	87	ENSG00000211958	ENSG00000187156	+	+	14	14	106866934	106977000	coding	intron	IGHV3-38	NCRNA00221	106866406	106938445	-	+	0	106866417	106938642	-	+	N	-	-	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.504947915120133	0.827783467410055	0.504947915120133	3	-	-	0.60524179975777
129403	TTGCTCTTTCTGCCTGGAACGGGCCCATAACCCCCCAGCCTTGCGCAGTCTCGGCTCCCCCCGAGAAGATGTCACCTTTGCTAACTTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTGGTTGC|CCACTGAGCCACCCTACAGCCAGAAGAGATACGAGGAAATCATTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCTGACACAGTAGAATTTGTGCCAATTTCTAGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCGGTAAGGATGGCAATGCCAGTGGAACCACG	1	0.0268461933675116	0.375556752806067	0.399915574091196	N	N	3.29037406969298	3.34718800228844	3.29037406969298	splitr	2	0	0	0	N	0	N	N	83603	14	ENSG00000130600	ENSG00000196511	-	+	11	7	2022700	144533146	intron	intron	H19	TPK1	2016406	144149034	-	-	0	2019005	144345198	+	+	Y	-	0.88522710895465	N	SKBR3_13_2_1	20	0	13	6	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	1	0.60524179975777
141455	ATTCTCTTAGAGGGACAGAACTAATAAGATATATATATATATATATAT|TCAGAATTAGGCAGCTGCACTCAGTTTAGATAATCCCAATTTTGTTGGCAACATCCAAAGCATCGTAATCAGGAGTCAGTCGAACATATACCTTCTTCTCTCCATCAGGCCGAATCAGGGTGTTGACCTTGGCCACATCAATGTCATAGAGCTTCTTCACAGCCTGTTTGATCTGGTGCTTGTTGGCTTTAACATCCACAATGAACACAAGTGTGTTGTTG	3	0.756687591607622	0.903767212031958	0.973846840902194	N	Y	2.61494618473286	3.57233464462502	2.61494618473286	splitr	47	0.25	0.25	0	N	0.375	N	N	0	0	ENSG00000227059	ENSG00000246896	+	+	12	19	133812681	16748905	downstream	intron	AC226150.2	AC020911.1	133794898	15050246	-	+	0.333333333333333	14445844	15722959	+	+	Y	-	1	N	SKBR3_13_2_1	672	0.54	451.5	231	2	1	N	N	0.54	0	2	0.413891733705027	0.827783467410055	0.827783467410055	0.413891733705027	3	-	0	0.60524179975777
111974	AAAAAGTCAGGAAACAACAGGTGCTGGAGAGGTTGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGATCCAGCCATCCCATTACTGGGTATATACCCAAAGGATTATAAATCATG|AATAAACTTTTGTATAAGGTGTAAGGAAGGGATCCAATTTCACCTTCGGACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGG	1	0.416030158832586	0.205558172728075	0.155228020814782	N	Y	3.22532124308776	3.34512186274866	3.22532124308776	splitr	286	0.923913043478261	0	1	N	0	N	N	611	3150	ENSG00000181458	ENSG00000205176	-	-	3	8	100296288	86575726	intron	downstream	TMEM45A	REXO1L1	100211463	86568695	+	-	0.891304347826087	100290929	86563796	-	-	Y	-	-	N	SKBR3_13_2_1	162	1	47.25	9	4	1	N	N	1	1	4	0.778116459365451	0.422169568379128	0.778116459365451	0.422169568379128	2	-	-	0.60524179975777
27984	TCGTCGACGCTGGGCTTTCGGGTCCCGCGCCCAGAGATGGGCTCCAAGGCAAAGAAGCGCGTGCTGCTGCCCACCCGCCCAGCGCCCCCCACGGTGGAGCAGATCCTGGAGGATGTGCGGGGTGCGCCGGCAGAGGATCCAGTGTTCACCATCCTGGCCCCGGAAG|GCTGGAGTGCAGTGGCGAGATCTCGACTCACTGCAGGCTCCGACTCCCCAGTTCAAGCGATTCTCCTGCCTCAGCCTCCGGAGT	1	1	1	0.935920242646516	Y	Y	3.63655728995158	3.4718366816007	3.4718366816007	splitr	250	1	0.0119047619047621	0	Y	1	N	N	262	10	ENSG00000119559	ENSG00000115266	+	+	19	19	1479228	1473243	coding	intron	C19orf25	APC2	1473203	1450148	-	+	0	1478773	1461823	-	+	N	-	0.927710219674817	N	SKBR3_13_2_1	1	1	1	1	0	1	N	Y	0	1	2	0.571170592512938	0.488392245771932	0.571170592512938	0.488392245771932	4	-	0	0.60524179975777
30252	CGGACCTGCGCTACGAGGTGACCAGCGGCGGCGGGGGCACCAGCAGGATGTACTATTCTCGGCGCGGCGTGATCACCGACCAGAACTCGGACGGCTACT|GAATCGTTCTTGGACACTGCTCTCACTGAGCTTACCGTCAGGACTTGATTTCCATGGAGAAGTTTGATTCCCTCCAATACGCTGGCTGCCAGCCCTCCTCACTAAGAAAGGTGACTCTGGGACGGCAGCCTCCTTCCTTCTGAGCCCTCGTCCTATACC	2	1	0.628320794780147	0.626856592055952	N	N	3.59268395140062	3.74337746277462	3.59268395140062	splitr	1	0	0	0	N	0	N	N	6001	0	ENSG00000096696	ENSG00000219814	+	+	6	6	7586950	171055065	coding	upstream	DSP	XX-C2158C6.2	7541808	171054606	+	+	0	7542317	8222810	+	+	N	0.614068370446485	-	Y	SKBR3_13_2_1	1	0	1	1	0	2	N	N	0	0	4	0.678782443276245	0.885728310128759	0.885728310128759	0.678782443276245	1	26.5	-	0.60524179975777
96375	TCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCC|CCCCTCCTCCCCCCCCTCCCCTGCAGCCCCACGGAGTCTACGCCGGGAGGAGTAGGAGGGCCGCTGCGGTAAGCTTTGAAGCCTAGGGTATGGGCCCAGGTGGATAGGCCACAGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAACATGGGTCCCAGGT	1	0.724170556489985	0.612610548302747	0.693969709788871	N	N	0.776482662581515	2.83986884469249	0.776482662581515	splitr	30	0	0	0	N	0	Y	N	0	0	ENSG00000230876	ENSG00000252318	-	+	2	2	33151760	133038738	intron	upstream	AL121656.4	AC097532.1	33050510	133038647	+	-	0	33141313	133038834	-	+	N	1	-	N	SKBR3_13_2_1	8	1	5	3	3	2	N	N	0.9375	1	3	0.935395318173362	0.438725237727329	0.935395318173362	0.438725237727329	1	0	-	0.60524179975777
56573	CACATAAGTTTTGCGACAAACCCAGCTCCGGGCCACTGGCATGTTGGCTCCGCTTCCCCGTCTGCGCTCATGGAAACTCGGAAGGCCCGGGCCACCATCCAACCCAAACCCTAGAGAAAAAGCACACCGCCGCACCTCACCTAAGCAA|CCCCCCTCCTAATACTAACTACCTGACTCCTGCCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAATGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATGACATTCACAGCCATAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCCTGGCTATCATCACCCGATGAGGCAACCAACCAGAACGCCTGAACGCAGGTACATACTTCCTATTCTACACCCTAGTAGGCTCCCTCCCCCTACTCATCGCACTAATCT	1	3.62091739368667e-05	0.375556752806067	0.399915574091196	N	N	3.18718747251292	2.92076799749848	2.92076799749848	splitr	9	0.0067567567567568	0	0	N	0.0202702702702703	N	N	8800	31	ENSG00000170889	ENSG00000132570	-	+	19	5	54752862	134343649	utr5p	intron	RPS9	PCBD2	54704610	134240596	+	+	0.0067567567567568	54704749	134263539	-	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	9	0	5.5	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	1	0.60524179975777
10931	TGGCGCCAGAAGCGAGAGCCCCTCAGGGCTCGCCCCCCCGCCTCACCGGGTCAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGGCCCGCAGGGCCGGCAGACCCCGCCCTGGACCCCTCGCGGGGACACCGGGGGGCGCCGGGGGCCTCCCACTTATTCTACACCTCTCACGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCCTCACTAATTAGATG|CCTCTCATTTACATAAATATTATACTAGAATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCTGATATCCTCCCTACTATGCCTAGAAGGAATAA	1	0.00018361837913748	0.375556752806067	0.399915574091196	N	N	3.68208619288838	3.0756913067072	3.0756913067072	splitr	3	0	0	0.5	N	0	N	N	0	0	ENSG00000226958	ENSG00000198868	-	+	X	5	108297792	134264016	intron	intron	RN28S1	CTB-36O1.4	108297361	134263720	-	-	1.11022302462516e-16	108297486	134264013	-	+	Y	1	1	N	SKBR3_13_2_1	6	1	4	2	2	1	N	N	1	0	2	0.827783467410055	0.629115435231642	0.827783467410055	0.629115435231642	1	0	0	0.60524179975777
140355	AAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGG|AGGTTCCTGCTGTGCCAGAAACCCTTAAGAAAAAGAGAAGGAATTTCGCAGAGCCGAAGATCAAGCACCTGAGAAAGAAGTTTGCCCAAAAGATGCTTCAAAAGGCAAGGAGGAAGCTTATCTATGAAAAAGCAAAGCACTATCACA	9	1	0.224110088685002	0.606800596095339	N	N	2.19315783450189	3.32320511986986	2.19315783450189	splitr	16	0.0853658536585366	0.134146341463415	0	N	0.182926829268293	N	N	14698	0	ENSG00000187514	ENSG00000187504	+	+	2	17	232578251	49580594	coding	intron	PTMA	RP11-958E11.1	232571605	49579849	+	-	0.121951219512195	232576688	49580566	+	+	Y	-	1	N	SKBR3_13_2_1	56	0.735294117647059	43	30	2	1	N	N	0.735294117647059	0	2	0.562892757838837	0.587726261861139	0.587726261861139	0.562892757838837	0	-	0	0.60524179975777
138860	CTGGCAGATCACAAAGATGGCGAGCGCCAGTTTCACCTGCTGAGCTCCGTAGGTAGGGGGAGTGTAGAGAGGGTGATTGATGTAATAGGCCATCCACGCGGCGAAGCCCCAGTAGTAGGTGCAG|ATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGA	1	0.561522878466796	0.311204357582937	0.306030290211129	N	N	3.50529022639353	3.46704205511183	3.46704205511183	splitr	14	0	0.0625	0	N	0.0625	N	N	1752	0	ENSG00000099797	ENSG00000252318	-	+	19	2	14676791	133038738	coding	intron	TECR	AC097532.1	14640382	133038647	+	-	0	14675600	133038714	-	+	Y	-	1	N	SKBR3_13_2_1	4	1	4	4	2	1	N	N	0	1	2	0.827783467410055	0.44700307240143	0.827783467410055	0.44700307240143	3	-	0	0.60524179975777
30139	TTTCTTATACTCCATACCACTGGTCTGTTTCTTTCCAGAACAGCAGAAGAGGATAACCAGGAACACAGGAAGGGCTACAGTTAGAATATAGACTACCCACAGCCACGGGCGCTCTTCAGCTGCCTCGATCATCTGCCCCACAACGCCTGGCTCAGCAGCCCCATCAGCA|GCCTCATCATCCCCACCATCATAGCCATCATCACCCTCCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACA	1	0.840280680658375	0.899266171301115	0.897571427984624	N	N	3.18399497724741	2.76903206878478	2.76903206878478	splitr	3	0	0.0232558139534882	0	N	0.0232558139534882	N	N	16908	0	ENSG00000127022	ENSG00000225630	-	-	5	1	179157926	566063	coding	intron	CANX	RP5-857K21.8	179105629	565020	+	+	0	179150002	565843	-	-	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
118368	ACAAACTTGGACTGGGTCAGCTTCTTTCTGCGGTCCTTCTTCACTGCTTCAGCCTTCAGCTCGGAGATGCGGGTGTGTTTGGGCCGGAAGATCTTGGGGG|TAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCAGTTGAAGATG	1	0.222637345284545	0.205558172728075	0.155228020814782	N	N	3.20703807585194	3.57808779297027	3.20703807585194	splitr	18	0.078125	0.078125	0	N	0.078125	N	N	3193	0	ENSG00000115461	ENSG00000251948	-	+	2	19	217560248	24184165	coding	intron	IGFBP5	AC092279.1	217536828	24184075	-	-	0.078125	217543742	24184132	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	0	1	2	0.546337088490636	0.488392245771932	0.546337088490636	0.488392245771932	1	-	0	0.60524179975777
136200	AAAAAACATTGAAGACGTCATTGCCCAGGGTATTGGCAAGCTTGCCAGTGTACCTGCTGGTGGGGCTGTAGCCGTCTCTGCTGCCCCAGGCTCTGCAGCCCCTGCTGCTGGTTCTGCCCCTGCTGCAGCAGAGGAGAAGA|AAGAAGAAAAGAAGGATGGTGACAAGAAGAAGAAGAAGAAGATTAAGGAAAAGTACATCGATCAAGAAGAGCTCAACAAAACAAAGCCCATCTGGACCAGAAATCCCGACGATA	1	1	0.375556752806067	0.399915574091196	N	N	3.22952388018421	2.48828027051028	2.48828027051028	splitr	16	0.12280701754386	0.12280701754386	0	N	0.201754385964912	N	N	10215	26619	ENSG00000177600	ENSG00000080824	+	-	11	14	812880	102606086	coding	coding	RPLP2	HSP90AA1	809647	102547073	+	-	0.12280701754386	812771	102551202	+	+	Y	-	-	N	SKBR3_13_2_1	2	0.283018867924528	1.5	1	1	1	Y	N	0	0.283018867924528	2	0.827783467410055	0.438725237727329	0.827783467410055	0.438725237727329	1	-	-	0.60524179975777
136452	GGCCCAAGAGGGTGTGCTTACATGTGGCGATCGATCTTCTTAGATTCACGGTATCTTCTG|AGCAGCCGGCTCATAAAGGTTCATTTGGACAAAGCACAGCAGAACAATGTGGAACACAAGGTTGAAACTTTTTCTGGTGTCTATAAGAAGCTCACGGG	1	0.153774376193213	0.163783040919641	0.102428735043176	N	N	3.60888739872753	3.50744965188915	3.50744965188915	splitr	10	0	0	0	N	0	Y	N	129759	0	ENSG00000108298	ENSG00000213326	-	+	17	17	37360980	44799533	coding	intron	RPL19	CTC-305D20.1	37356536	44798948	+	-	0	37359324	44799085	-	+	N	0.69206372304717	1	N	SKBR3_13_2_1	21	0	18.3333333333333	16	3	1	N	N	0	0	3	0.430447403053228	0.844339136758256	0.844339136758256	0.430447403053228	2	11964	0	0.60524179975777
135936	GACATTGAAGGTGGGGGCCCCACCGGTGCTCTTGGTACGAAGATCCATGCTAAATTCCCCATCCTGCAGCAGT|GAGTCCCTGCCACACTCAGTCCCCCACCACACTGAATCTCCCCTCCTCACAGTTTCCATGTAGACCCCTTGAAGAGGGGAGGGGCCTAGGGAG	1	0.239504753645452	0.612610548302747	0.693969709788871	N	Y	3.72551845106187	3.17784060131804	3.17784060131804	splitr	92	0	0	0	N	0.10958904109589	N	N	6616	0	ENSG00000108518	ENSG00000228232	+	+	17	X	4852309	39647390	coding	downstream	PFN1	GAPDHP1	4848947	39646386	-	-	0	4850017	39646323	+	+	Y	3.10462862829125	-	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.488392245771932	0.513225749794234	0.513225749794234	0.488392245771932	2	913.5	-	0.60524179975777
138280	GACCCTTTTGGCTCCCCCCTGCAAATGAGCCCCAGCCTTCTCCATGGTGGTGAAGACGCCAGTGGACTCCACGACGTACTCAGCGCCAGCATCGCCCCACTTGATTTTGGAGGGATCTCGCCTATGGGGGTGGGGGGGAGATGGGGACAGGACCATATTGAGGGACACAAGGTTACCATATACCCAAGGGAGCCACACCATCCTAGTTGCCTCCCCAAAGCACATTTCTTCCATTCTGTCTTCCACTCACTCCTGGAAGATGGTGATGGGATTTCCATTGATGACAAGCTTCCCGTTCTCAG|GCTACACCCTAGACCAAACCTACGCCAAAATCCATTTCGCTATCATATTCATCGGCGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTATCCCGATGCATACACCACATGAAATATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATAATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATG	1	8.26470924707118e-14	0.447538936456759	0.5	N	N	3.52614339427891	3.30128837699106	3.30128837699106	splitr	13	0	0	0	N	0	N	N	62936	0	ENSG00000111640	ENSG00000237973	-	-	12	1	6647537	567996	coding	intron	GAPDH	RP5-857K21.6	6643093	566454	+	+	0	6645905	567659	-	-	Y	-	1	N	SKBR3_13_2_1	6	0	5	4	2	1	N	N	0	0	2	0.463558741749631	0.827783467410055	0.827783467410055	0.463558741749631	2	-	0	0.60524179975777
109107	AAACTTCCACCGATGAGGCAGGTAGGAGATAAAGATGAATTCTGAACTGTTACTAAAAGTACTCATTTTTTACCTTGTAGGGAGGGTGGGCAATGGGGTTACCTGACCTTATTTGAGGGTATGGGCTTTCTTTTTTATTTCATCACTTGTTATCTCAAAGAGACTCGGAGCCAGTGATCCTTTTATCCTGCTACAGTCTTTAGGGAGCTAAAAAAAAAAAAAAAGCAGGGGCTGCCAAAACTCTTGATTTCATATTTCCTTCTCTAAATATATATGTATCCTGTTTTTTGGATAAAATTTTACCAAGAATCC|AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2	0.0155891248353863	0.196734923242299	0.258789252325421	N	Y	3.34000055658918	0.494089294346095	0.494089294346095	splitr	0	0.325	0.325	0	N	1	N	N	4421	422	ENSG00000069275	ENSG00000172869	+	-	1	5	205719404	118584833	coding	intron	NUCKS1	DMXL1	205681947	118373467	-	+	0.325	205686537	118584833	-	-	Y	-	-	N	SKBR3_13_2_1	7	0	4.33333333333333	1	2	1	N	N	0	0	3	1.10095201165537	0.413891733705027	1.10095201165537	0.413891733705027	1	-	-	0.60524179975777
76354	CAACTGGCTTTGGCATGATTTATGATTCCCTGGATTATGCAAAGAAAAATGAACCCAAACATAGACTTGCAAGACATGGCCTGTATGAGAAGAAAAAGACCTCAAGAAAGCAACGAAAGGAACGCAAGAACAGAATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAAGCCGAAGGAGTAAAGGTGC|GGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTAGTCATCTAATTAGTGACGTTCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACG	1	1	0.209527252024466	0.160545729398276	N	N	3.36038971615814	3.63040291402221	3.36038971615814	splitr	2	0	0	0	N	0.00787401574803148	N	N	25185	0	ENSG00000138326	ENSG00000198626	+	-	10	1	79816570	238129359	utr3p	intron	RPS24	RYR2	79793518	237205505	+	+	0	79800390	237766404	+	-	Y	-	1	N	SKBR3_13_2_1	18	1	16.5	15	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
114058	AGTACTACCACAGCCTTTAAGTGACATTGATTTATAACTTGGTCACAATTCACTGCATTTAGGAAAACCAGCATTCTTATCTGGTCAGTGCTCGCTTCTTAGCAACCCCTAATTAAATTTAATTCATCTCTAAATCTTAGCTTCAACTTTATTCAATTACATTTGGCTGACGGCTGTTTTCTAAAACCCTTAAGTGTTGACCATAAATGCAAAACTTCCAGTATCTGTTGGGTTTTATTAGCAGATGCTG|TTTTTTTTAAAAAAAAAAAAAAGGACAGTAGTGTGTGAGGTGGGCCTGGTGGCTC	1	0.70847974388354	0.375556752806067	0.399915574091196	N	N	3.56129235625094	2.67065883613592	2.67065883613592	splitr	30	0.4	0.454545454545455	0	N	0.490909090909091	N	N	21446	1070	ENSG00000072274	ENSG00000198824	-	+	3	13	195809060	115092796	utr3p	upstream	TFRC	ZNF828	195754054	115079988	-	+	0.4	195777813	30477632	+	+	Y	-	-	N	SKBR3_13_2_1	1	0.58	1	1	0	1	N	N	0	0.58	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	2	-	-	0.60524179975777
128908	AATCAGGCAGGAATTTGGCAGGAACATCAGACATTGGAAGGTTAGATGAGACTGAACAGGTGAGAAAACTCTTAGGGTCCCCAGACAGCATTGAGATCTCACAGAGGGGCCCCAAGGGCCTGCGACTCC|TTGACGTTGACAATCGAGTAGTACTCCCGGTTGAAGCCCCCATTCGTATAATAATTACATCA	2	0.353854973869309	0.196734923242299	0.258789252325421	N	N	3.50000108636471	3.71873223294673	3.50000108636471	splitr	11	0	0	0	N	0	Y	N	16903	3	ENSG00000188643	ENSG00000230021	-	-	1	1	153585644	659930	utr3p	intron	S100A16	RP5-857K21.4	153579362	536816	-	-	0	153579805	568543	+	-	N	-	0.828962371721779	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	2	-	0	0.60524179975777
141099	TGTCTGACCCAGGCCTGGGGTACCACCCCACGTGCTGGACCCTACGCTGGCCACCCCTGTGCTCCCTCCCTGCCCTCTTGCTCTTTCTGCCTGGAACGGGCCCATAACCCCCCAGCCTTGCGCAGTCTCGGCTCCCCCCGAGAAGATGTCACCTTTGCTAACTTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTGGTTGCCCCTCGGTTCCCCACTTCCCCA|GATTCCCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCAGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGGTTTTGATC	1	0.0194088978113578	0.552238018696473	0.629579620139678	N	N	3.02808268386148	3.53974633573272	3.02808268386148	splitr	8	0.0362694300518136	0.0362694300518136	0	N	0.0621761658031088	N	N	83603	0	ENSG00000130600	ENSG00000212932	-	+	11	21	2022700	48111157	intron	upstream	H19	RPL23AP4	2016406	48110676	-	+	0.0362694300518136	2019027	9827421	+	+	Y	-	-	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	-	0.60524179975777
124525	GGGAGCGCAGAATGAATCAAGAAGTGAACCATTCAAATGTGGCTGCAGTTTTTGTGTGTATCACAGATGGGATCCTTCTGAGAATGCTAGAAAAGGGAATTATGACACAGAGCCTATTCAGCCATAAACATTATTTTTGTACTTTTTCTTTCTTGCTGGTAATTTT|ATGGAGCAGGTTAAGAAGGCTGCTCTGTGTTAGGATAAACTGTATACCAATAATGTTGACAA	1	1	0.163782765099475	0.102428735043176	N	N	2.96472527443546	3.60785432895764	2.96472527443546	splitr	0	0	0	0.5	N	0.0967741935483871	N	N	2	120	ENSG00000204527	ENSG00000236756	+	+	19	10	57678856	75036742	downstream	intron	DUXA	C10orf103	57663094	75006946	-	+	1.11022302462516e-16	57662385	75009289	+	+	Y	-	16.9910028553693	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.413891733705027	0.438725237727329	0.438725237727329	0.413891733705027	2	-	0.5	0.60524179975777
76226	AGCCAGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAATACCCATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCCCCGATATGGCGTTTCCC|CGCCCGCCCCCCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCCCCCCCGCGAAGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGCTACTGGCAGGATCAACCAGGT	1	9.0844388848882e-05	0.163783040919641	0.102428735043176	N	N	3.3608842296981	2.5959231110954	2.5959231110954	splitr	3	2.22044604925031e-16	0	0	N	0.0316455696202531	N	N	0	0	ENSG00000237973	ENSG00000212932	+	+	1	21	567996	48111157	intron	upstream	RP5-857K21.6	RPL23AP4	566454	48110676	+	+	2.22044604925031e-16	566738	9827280	+	+	Y	1	-	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.827783467410055	0.471836576423731	0.827783467410055	0.471836576423731	1	0	-	0.60524179975777
17428	GGAGGAATGGGGTGGGTTTTGTGTGTTCAAACTGTCATTTTATTTTTACGTTGTTAGATATAGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGCAGGTAGAAGTAGAGGTTAAGGAGGGT|GATGAGGACAAAGATGAGGATGAGGAGGATGAGGAGGACAAGGAGGAAGATGAGGAGGAAGATGTCCCCGGCCAGGCCAAGGACGAGCTGTAGAGAGGCCTGCCTCCAGGGCTGGACTGAGGCCTGAGCGCTC	1	1	1	0.935920242646516	N	N	3.04607902422004	2.63242243203542	2.63242243203542	splitr	14	0.0645161290322582	0.0645161290322582	0	N	0.120967741935484	N	N	0	9938	ENSG00000225630	ENSG00000179218	-	-	1	19	566063	13055304	intron	coding	RP5-857K21.8	CALR	565020	13049414	+	+	0.0645161290322582	565875	13054635	-	-	Y	1	1.18395575914235	N	SKBR3_13_2_1	2	0.354545454545455	2	2	3	1	N	N	0	0.354545454545455	3	0.852616971432356	0.91056181415106	0.91056181415106	0.852616971432356	3	0	380.666666666667	0.60524179975777
135184	GCGGCTAGGACTGGGAGAGATAGGAGAAGTAAGACTGCTGTGATTAGGACGGATCAGACGAAAAGGGGCGTTTGGTATTGGGTTATGGCAGGGGGTTTTATATTAATAATTGTTGTGATGAAATTGATGGCTCCTAAGATAGAGGAGATACCTGCTAGGTGTAAGGAGAAGATGGTTAGGTCTAC|GGAGGCAAGAAGAAGGATCCTAATGCCCCCAAAAGGCCACCATCTGGATTCTTCCTGTTCTGTTCAGAATTCCGCCCCAAGATCAAATCCACAAACCCCGGCATCTCTATTGGAGACGTGGC	1	0.338215752869519	0.254583648908217	0.223418152789081	N	N	3.57696143724454	3.2729561383577	3.2729561383577	splitr	6	0.0491803278688526	1.11022302462516e-16	0	N	0.081967213114754	N	N	0	0	ENSG00000237973	ENSG00000215283	-	+	1	9	567996	36304921	intron	intron	RP5-857K21.6	HMGB3P24	566454	36303496	+	-	0.0491803278688526	566880	36303874	-	+	Y	1	1	N	SKBR3_13_2_1	15	0	11.5	8	2	1	N	N	0	0	2	0.827783467410055	0.769838624691351	0.827783467410055	0.769838624691351	3	0	0	0.60524179975777
99617	GAAACTTCCCCATTCGGTGCACCAAGAGCAACCTCACACGGTGTGGGCCGAATGAAGAGCTGCCAGATCCCACAGATGGAGTTATTTCTCTTTTCCTTGGGCTCAAATGCAACGGCACCATCTCAGCTCACTGCAACC|TCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCGGAATAGCTGGGATTACAAGCGCCTGCCACAAT	1	0.794959941388834	0.704121951840997	0.776581847210919	N	Y	3.27035563248461	3.40165320126619	3.27035563248461	splitr	114	0.905405405405405	0	0.333333333333333	N	0.905405405405405	N	N	594	1	ENSG00000225241	ENSG00000224738	+	+	1	17	144621656	57195628	intron	intron	NBPF8	AC099850.1	144593363	57183959	+	+	0	144603193	57195561	+	+	Y	-	-	N	SKBR3_13_2_1	112	1	46.6666666666667	8	3	1	N	N	0.375	1	3	0.951950987521563	0.769838624691351	0.951950987521563	0.769838624691351	1	-	-	0.60524179975777
73100	TCCCGGGGCCCCCCTCCCGTGGCCGCTTCGCCCTCCTGGTGACGTCCTGCTGCAACTCCCCGAGCACTGCCTGTCTTCCCGCT|CTCCACTTCAACCACAGTGGCATCTGTGAGCTGCACTGCCCAGCCCTGGTCACCTACAACACAGACACGTTTGAGTCCATGCCCAATCCCGAGGGCCGGTATACATTCGGCGCCAGCTGTGTGACTGCCTGTCCCTACAACTACCTTTCTACGGACGTGGGATCCTGCACCCTCGTCTGCCCCC	1	1	0.254583648908217	0.223418152789081	N	N	3.29972094088785	3.53568860456667	3.29972094088785	splitr	23	0	0.0963855421686747	0	N	0.120481927710843	N	N	83603	74211	ENSG00000130600	ENSG00000141736	-	-	11	17	2022700	37884915	intron	coding	H19	ERBB2	2016406	37844393	-	+	0	2018208	37866599	+	-	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	3	N	N	0	0	4	0.736727285994949	1.4568989026417	1.4568989026417	0.736727285994949	3	-	-	0.60524179975777
106472	GTTCCTGCTACCACCAAAGTTTCCACTCTTCATTGGACCGTAGTTAGAAGGTTGCTGGTTATAATTTCCAAAATCATTGTAATTTCCACTTCCATAATTTCCTCCTCCATAGTTGTCATAACCACCTCCGTAGCCCCCACCCTGGTTGCCATATCCAG|GCCACCACCCCAGCACCATATCCTCCTCTTCCACCAGAGTTTCTACCCATGGCCAAA	1	0.280696313700176	0.899266171301115	0.897571427984624	N	N	3.4555052531978	3.15781281653986	3.15781281653986	splitr	32	0.350877192982456	0.350877192982456	0	N	0.385964912280702	N	N	13407	2051	ENSG00000122566	ENSG00000149100	-	-	7	11	26241149	32627808	coding	intron	HNRNPA2B1	EIF3M	26229547	32605344	-	+	0.350877192982456	26233251	32613658	+	-	Y	-	4.25380896623648	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0	1	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	3	-	162.5	0.60524179975777
141719	GCGGGCGGGCCTCTCTACTCGAAGGTGACCACGTTTAGATTCTGAGACGGGAAGTGGAGGGTGAATAGGTCACGGCGGCCTTTTTTTTTTTAGTTTAACTT|TTCCTTTTTTTTTTTTTTTTTTAACTTCCTGCCTATACACACGCAGCCATCAGCCCACAAAGACATGACTACCAACGCGGGC	2	0.419085444591636	0.10660547549289	0.0978048625560518	N	N	3.3655644554801	2.60330919162126	2.60330919162126	splitr	10	0.121951219512195	0.121951219512195	0	N	0.207317073170732	N	N	14698	971	ENSG00000187514	ENSG00000147155	-	-	2	X	232578251	48387104	utr3p	utr5p	PTMA	EBP	232571605	48379546	+	+	0.121951219512195	232577577	48382096	-	-	Y	-	0.101796445943151	N	SKBR3_13_2_1	7	0.378048780487805	6.5	6	2	1	N	N	0	0.378048780487805	2	0.703615947298547	0.678782443276245	0.703615947298547	0.678782443276245	2	-	53	0.60524179975777
140817	CAGGAGACTGGCTGCGAACATTTTCAGGTAGGTGGACATGGGCACGCCCGCGGGCATGGTCGGCAGG|CTGATAATGCAACACAGTCTTTAATCGGGGCGAATTTCGGGGTGGAAAGGACTAGATAATGCTGATAAGCGTCATCATCCCATATACACAGCACCCCAAGGACAGCACCCTATCGCCCACGCGTCCACCAGCCCCCGAAAATACTGGAGACAAAAGCTGACGTCGGCAGAGCGCTCCTAGTCCCCGTCTTCTGGTCCTCCACCCTTCC	1	0.899552451125161	0.311204357582937	0.306030290211129	Y	Y	3.26932256271472	3.62192127872787	3.26932256271472	splitr	275	1	0	0	Y	0.716417910447761	N	N	100	653	ENSG00000204954	ENSG00000139372	-	-	12	12	104350993	104382652	utr5p	upstream	C12orf73	TDG	104343981	104359582	-	+	0	104350526	104359294	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	2	0.571170592512938	0.504947915120133	0.571170592512938	0.504947915120133	4	-	-	0.60524179975777
136819	CGGGTGCGGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTAGGTGGATCACCCGAGGTCAGGAGTTCGAAACCAGCCTGGCTAACGTGGTGAGACCCCGTCTCTACTAAAAATACAAAATTAGCCGGG|TGTGGTGGCGGGTGCCTGTAATCCCAGCTACTCCGAAGCCTGAGACAGGAGAATCACTTGAACCCGGGAGAAGGAGGTTGTGGTGAGCCAGAGATCCCACCATTGCATTCCAGCCTGAGCAACAAGAGCAAAACTCACAAAAATAAATAAATAAATAAATATATAAATAAAAATAAAACTGT	1	0.656564023634529	0.375556752806067	0.399915574091196	N	Y	3.52407725473913	3.60103760561896	3.52407725473913	splitr	320	0.956521739130435	0.58695652173913	0.5	N	0.681159420289855	N	N	8	440	ENSG00000198592	ENSG00000196502	+	+	12	16	122837333	28634907	intron	intron	RP11-144J4.1	SULT1A1	122830348	28616903	-	-	0	122836763	28619466	-	+	Y	-	2.33606946077352	N	SKBR3_13_2_1	16	1	15	14	2	1	N	N	1	0.541666666666667	2	0.827783467410055	0.794672128713653	0.827783467410055	0.794672128713653	1	-	29.5	0.60524179975777
129482	AAGTTTTTTTTTTTCTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTT|TTTTGAGATGGTCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCATAGCTCACCACAGCCTCAAACTAGGGGTCACTTCTAAGGGATGCTGGGGGTTGGGCGGAAGGGGTGAGGAGGTAGGATTGAGTAACTTGCTGTCACTGCTTGTACTTTGTAGACAGCCTGAGAGTGGCAGGACCTTATGTGAATGGGGGGG	1	0.857250964338357	0.899266171301115	0.897571427984624	N	Y	1.35824902870485	3.42360979693834	1.35824902870485	splitr	128	0	0.425531914893617	0.5	N	0.617021276595745	N	N	667	1326	ENSG00000196792	ENSG00000105514	+	-	14	19	31495607	11450344	utr3p	utr3p	STRN3	RAB3D	31363005	11432723	-	-	0	31364268	11434933	-	+	Y	-	-	N	SKBR3_13_2_1	79	0.596491228070175	58.5	38	2	1	N	N	0.596491228070175	0.267045454545455	2	0.471836576423731	0.827783467410055	0.827783467410055	0.471836576423731	2	-	-	0.60524179975777
119615	GGAAGGGCAGGCACATGGGCATAGGTAAGCGGAAGGGTACAGCCAATGCCCGAATGCCAGAGAAGGTCACAT|GGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGG	1	0.166973642283167	0.375556752806067	0.399915574091196	N	N	3.52105259334297	3.60679075396421	3.52105259334297	splitr	9	2.22044604925031e-16	0	0	N	0	N	N	129759	0	ENSG00000108298	ENSG00000141161	+	+	17	17	37360980	33516364	coding	intron	RPL19	UNC45B	37356536	33474836	+	+	2.22044604925031e-16	37359289	33478222	+	+	N	-	1	Y	SKBR3_13_2_1	6	1	3.5	1	1	2	N	N	0	1	2	0.827783467410055	0.513225749794234	0.827783467410055	0.513225749794234	1	-	0	0.60524179975777
119226	GCTTCTTTGACAGGCTCTTCCTCCTCCTCTTCTTCCTCCTCCTCATCATCTTCATCATCATCATCTTCATCATCTTCGTCGTCGTCGTCATCCTCGTCCTCATCATCCTCTTCTTCATCTTCATCCTCAGCCACGTTCTTGGCTTTCACAGGAACAACTTTTGCAGCTTTCTTTCCTTTGGCTGGTGTAGTCTCCATAGCTTCTTCTTCAGAGTCATCTTCCTCATCGTCATC|GCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACT	2	1	0.808744637905766	0.0727055885476373	N	N	3.20351890091582	3.43511609362884	3.20351890091582	splitr	6	0	0.0113636363636362	0	N	0.0568181818181817	N	N	7868	3	ENSG00000115053	ENSG00000230021	-	-	2	1	232348352	659930	coding	intron	NCL	RP5-857K21.4	232318242	536816	-	-	0	232326269	568365	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0.359504132231405	2	2	6	2	N	N	0.359504132231405	0	6	1.58934425742731	0.678782443276245	1.58934425742731	0.678782443276245	2	-	0	0.60524179975777
136425	TGGCAAGACAACTGGCTTTGGCATGATTTATGATTCCCTGGATTATGCAAAGAAAAATGAACCCAAACATAGACTTGCAAGACATGGCCTGTATGAGAAGAAAAAGACCTCAAGAAAGCAACGAAAGGAACGCAAGAACAGAATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAAGGCCTCCTTGGAGCGGGGAAGGAGAGCTCTTCAGTTCCTTTGGCACCTTCACGCAGCATGCAAGACGGGCTGCTTTTTCTTCTGTTTATGGATGAGGCACAGAGGGTAGATGACTTGCCCCAAGTCCTTCAGCTCATTCAT|TGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATTACCACCCAACAATGACTAATCCAAC	1	5.82840229884244e-07	0.321839855309698	0.321669634186996	N	N	3.63552422018169	3.5319270478477	3.5319270478477	splitr	8	0	0	0	N	0	N	N	25185	3	ENSG00000138326	ENSG00000230021	+	-	10	1	79816570	659930	intron	intron	RPS24	RP5-857K21.4	79793518	536816	+	-	0	79808878	569105	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	21	0	19.5	18	2	1	N	N	0	0	2	0.827783467410055	0.645671104579843	0.827783467410055	0.645671104579843	3	-	0	0.60524179975777
126486	TTCATGCTGCTGACTCTTTGCTTGTGGCCAGTCCCCATGCCTGCAGAGACACAGCTCCTCAGCTCCCATTGGAGGGGCTCAACAGCCAGTTTCCAGTGAACACATTTTCTTCTATTCATTTTGATATTATAAGTTAT|CTTGGCCTGTGGGCTAATGCCATAGCTGGTGAAGGCATATTGCCACTGGGGCAGGCCCAGGTGGGTGATGAGCAGGCGGTAATAGGCAGTAAAGGTGTCTGTGAGAAAATGCCAGTATAACGCTCTGTCCAGGAACCAGATCTCAGTGTCTTCTGCTAATG	2	0.345663129627714	0.572228613671423	0.686272108117709	Y	Y	3.14843544012144	3.46079439322662	3.14843544012144	splitr	298	1	2.22044604925031e-16	0	Y	1	N	N	2	409	ENSG00000134775	ENSG00000134779	+	-	18	18	34360018	34409158	downstream	coding	FHOD3	C18orf10	33877702	34376035	+	-	0	34367042	34378412	+	-	N	-	0.767593384210478	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	3	0.662226773928044	0.827783467410055	0.827783467410055	0.662226773928044	4	-	14	0.60524179975777
119813	GGAGTACTTGTGGAAGATGGCCACGAGGAGGCCAATGGCCTGATCCAGGGGGCATGCCATGGCTGAGGGCTGGGCTTGGAGCGGTAGGGAGGCGGCCAAAT|GTACCAAGAAAGTCGGGATCGTCGGTAAATACGGGACCCGCTATGGGGCCTCCCTCCGGAAAATGGTGAAGAAAATTGAAATCAGCCAGCACGCCAAGTACACTTG	1	0.764937316172662	0.447538936456759	0.5	N	N	3.21956809474252	3.21960794753587	3.21956809474252	splitr	9	0.0693069306930693	0.0693069306930693	0	N	0.178217821782178	N	N	24283	8876	ENSG00000197956	ENSG00000197756	-	-	1	2	153508720	217443903	utr5p	coding	S100A6	RPL37A	153507075	217362912	-	+	0.0693069306930693	153508444	217364000	+	-	Y	-	0.312603553287731	N	SKBR3_13_2_1	3	0	3	3	2	1	N	N	0	0	2	0.811227798061854	0.480114411097832	0.811227798061854	0.480114411097832	2	-	1513	0.60524179975777
30403	TTTTTTTTTTTTTTTTTTTTCCCCCTTAAATAGCTGTTTATTTGGCAGTGTGCCGGAAAGGGTGATGGACTTAGCATTCACAGACGA|CACCACACACCACCTGTCCAGAAAGGCCTTCGATACGGGATAATCCTATTTATTACCTCAGAAGTTTTTTTCTTCGCAGGATTTTTCTGAGCCTTTTACCACTCCAGCCTAGCTCCCACCCCCCAACTAGGGGGACACTGGCCCCCAACAGGCATCACCCCGCTAAATCCCCTAGAAGTC	3	1	0.397375327750185	0.5	N	N	3.69681549006792	3.54296933622177	3.54296933622177	splitr	18	0	0	0	N	0.172413793103448	N	N	37145	3	ENSG00000149925	ENSG00000230021	-	-	16	1	30081741	659930	utr3p	intron	ALDOA	RP5-857K21.4	30064444	536816	+	-	0	30081668	569963	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	3	1	N	N	0	0	3	0.44700307240143	0.90228397947696	0.90228397947696	0.44700307240143	2	-	0	0.60524179975777
81817	GACAAGGGCCCTGTGGTTTCCTGGTGTTCGTAAGTGAATGTGCTCCAGTTAGAGCAACAGGATGTTGGGGGAATGAAGGGAAAGAGTTGGTATCAATGGAGTGGGAGAGGTGAGGAGA|ATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACATGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAAACAAGC	2	0.905085628440081	0.14642513198438	0.165868294288181	N	N	2.9845800676711	3.73656073943594	2.9845800676711	splitr	10	0.0178571428571429	0.0178571428571429	0	N	0.151785714285714	N	N	6770	129759	ENSG00000089597	ENSG00000108298	-	-	11	17	62414104	37360980	utr3p	coding	GANAB	RPL19	62392298	37356536	-	+	0.0178571428571429	62393106	37359301	+	-	Y	-	-	N	SKBR3_13_2_1	10	0	7	3	3	1	N	N	0	0	3	1.00161799556617	1.00161799556617	1.00161799556617	1.00161799556617	0	-	-	0.60524179975777
140278	AATGCTGGCTCGCAGTTTTCTCACGTGCTGA|TCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGT	1	0.0137019454484729	0.447538936456759	0.5	N	N	3.51816465901612	3.45447218342791	3.45447218342791	splitr	7	0	0	0	N	0.354838709677419	N	N	0	0	ENSG00000235552	ENSG00000252318	+	+	18	2	6463009	133038738	intron	intron	CTD-2124B20.1	AC097532.1	6462143	133038647	-	-	0.193548387096774	6462608	133038713	+	+	Y	1	1	N	SKBR3_13_2_1	22	1	15	8	2	1	N	N	0	1	2	0.827783467410055	0.463558741749631	0.827783467410055	0.463558741749631	2	0	0	0.60524179975777
84578	GCAAATTAAATTCAGAAGGGACGGGGGAAACAGAGTCGTGGAGGCTTTGAATCTCTCAGAAAAAAGGAAAGACAGGAAAGCTCAGAAACAAAGAGACAGAAGGATGAAAAAGAAGAAGAGGGAG|ACGAAGATGATGAGGATGACGATGACGATGAGGAAGATGACTCTGAAGAAGAAGCTATGGAGACTACACCAGCCAAAGGAAAGAAAGCTGCAAAAGTTGTTCCTGTGAAAGCCAAGAACGTGGCTGAGGATGAAGATGAAGAAGAGGATGATGAGGACGAGGATGACGACGACGACGAAGATGATGAAGATGATGATGATGAAGATGATGAGGAGGAGGAAGAAGAGGAGGAGGAAGAGCCTGTCAAAGAAGCACCTGGAAAACGAAAGAAGGAAATGGCCAAACAGAAAGCAGCTCCTGAAGCCAAG	1	3.71292362413307e-05	0.800133926999915	0.844771979185218	N	N	2.36675859038612	2.70501654325161	2.36675859038612	splitr	1	0.00806451612903225	0.00806451612903225	0	N	0.0806451612903228	N	N	83603	7868	ENSG00000130600	ENSG00000115053	-	-	11	2	2022700	232348352	intron	coding	H19	NCL	2016406	232318242	-	-	0.00806451612903225	2016834	232326289	+	+	Y	-	-	N	SKBR3_13_2_1	1	0.399082568807339	1	1	0	1	N	N	0	0.399082568807339	3	0.480114411097832	1.18373035839638	1.18373035839638	0.480114411097832	3	-	-	0.60524179975777
33767	CCTTGTCTGCCTTCAGCTTGTGGATGTGTTCCATGAGAATCCGCTTGTTTTTGAACACATTCCCCTTCACCTTCAGGTACAGGCTGTGATACATGTGGCGATCGATCTTCTTAGATTCACGGTATCTTCTGAGCAGCCGGCGCAAAATCCTCATTC|TCCATCATCCACAACCTCAACAATGAACAAGATATTCGAAAAATAGGAGGACTACTCAAAACCATACCTCTTACTTCAACCTCCCTCACCATTGGCAACCTAGCATTGGCAGGAATACCCTTCCTCACAGGTTTCTACTCCAAAGACCACATCATCGAAACCGCAAACATATCATACACAAACGCCTGA	2	1	0.210799777258963	0.285087288643579	N	N	3.71976530271662	3.33949669547941	3.33949669547941	splitr	13	0	0	0	N	0	N	N	129759	31	ENSG00000108298	ENSG00000132570	-	+	17	5	37360980	134343649	coding	intron	RPL19	PCBD2	37356536	134240596	+	+	0	37359299	134261117	-	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	18	0	10.6	4	5	1	N	N	0	0	5	0.993340160892066	0.885728310128759	0.993340160892066	0.885728310128759	0	-	0.4	0.60524179975777
138746	TGTACTGGCGCCCGCAGGCCTCATCCTCCTCCATGATGCCCTTGCTGCTGACGGAGGGCACGCAGGTGTTGGCGCCCGAGTGGATACCCGAGTCGTAGGTGTATGTCTGCTGCCACTCAGTCACCTTGATAGGCTGCTCCATCAGGTTCATCACC|ACAATTATTAATATAAAACCCCCTGCCATAACCCAATACCAAACGCCCCTTTTCGTCTGATCCGTCCTAATCACAGCAGTCTTACTTCTCCTATCTCTC	1	1	0.375556752806067	0.399915574091196	N	N	3.61144805180727	2.87423653001532	2.87423653001532	splitr	17	0	0	0	N	0	N	N	14067	0	ENSG00000173801	ENSG00000237973	-	-	17	1	39943183	567996	coding	intron	JUP	RP5-857K21.6	39775692	566454	-	+	0	39928101	566952	+	-	Y	-	1	N	SKBR3_13_2_1	3	0	2.33333333333333	2	3	1	N	N	0	0	3	0.836061302084155	0.794672128713653	0.836061302084155	0.794672128713653	0	-	0	0.60524179975777
135210	CGAGCATCTCGGCCAGCAGCCAGCGGTCAATGTGCTGGTAAGTGATACCCACAACATGGCAGATAAACTTTCGGACAGAGTCTTCAAAGCCAGTTATACCTTCCAAGAGGTCCATGTTTTCATCCAGGGCTTGCCAGAAGGCCTGGAAATGGCAGGTCTCCAGCAGGTCCCCGAGGTACAAAATCTGTCGGATTGGCCGTTCTTCTTGATGTGCCTGGTCGATC|CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGG	1	0.895311471609699	0.447538936456759	0.5	N	N	3.38440310380026	3.53143253430774	3.38440310380026	splitr	11	0	0	0	N	0.0232558139534885	N	N	4148	0	ENSG00000178982	ENSG00000212932	-	-	19	21	39127595	48111157	coding	upstream	EIF3K	RPL23AP4	39109722	48110676	+	+	0	39114822	9827018	-	-	Y	-	-	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0	1	3	1.24167520111508	0.993340160892066	1.24167520111508	0.993340160892066	3	-	-	0.60524179975777
47514	CTCACACGATAAACCCTAGGAAGCCAATTGATATCATAGCTCAGACCATACCTATGTATCCAAATGGTTCTTTTTTTCCCGGAGTAGTAAGTTACAATATGGGAGATTATTCCGAAGCCTGGTAGGATGAGAATATAAACTTCAGGGTGACCGAAAAATCAGAATAGGTGTTGGTATAGAATGGGGTCTCCTCCTCCGGCTGGGTC|GAAGAAGGTCTGGTTAGACCCCAGTGAGACCAATGAAATCGCCAATGCCAACTCCCGTCAGCAGATCCGGAAGCTCATCAAAGACGGGCTGATCATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACGTG	2	0.0434718828110103	0.258666488296237	0.373143407944048	N	N	3.38656252929588	3.49168728493972	3.38656252929588	splitr	9	0.052325581395349	0.0348837209302325	0	N	0.063953488372093	N	N	0	0	ENSG00000237973	ENSG00000218227	-	-	1	5	567996	177483195	intron	intron	RP5-857K21.6	RP11-889L3.1	566454	177482605	+	+	0.052325581395349	567114	177482661	-	-	Y	1	1	N	SKBR3_13_2_1	8	0	7	6	2	1	N	N	0	0	2	0.827783467410055	0.538059253816536	0.827783467410055	0.538059253816536	2	0	0	0.60524179975777
139422	GAGATCGCACCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCGTCTAAAAAAAAAAAA|AAAAAAAAAAAGAAAAGAAACACCAGGGAGGTTTCTTCTTTAAAGCACTTGAGAGAAAGAGGGTAATAAGTAACCTTCACTCTGCTATGCAAACACTGTACAAGGGTGAG	1	0.290467481002461	0.163783040919641	0.102428735043176	N	Y	3.16406982599488	2.74493055286001	2.74493055286001	splitr	172	0	0.629032258064516	0	N	0.790322580645161	N	N	1	506	ENSG00000135094	ENSG00000154945	+	+	12	17	113841692	48785285	intron	utr3p	SDS	ANKRD40	113830257	48770553	-	-	0	113832152	48771491	-	-	Y	-	-	N	SKBR3_13_2_1	40	1	38.5	37	2	1	N	N	1	0.388888888888889	2	0.430447403053228	0.596004096535239	0.596004096535239	0.430447403053228	2	-	-	0.60524179975777
28866	GAAGAAGATATAAAATATGATTAGTTCTATGGCTGTGAATGTCATAATTAAGGAGATTTGTAGGGAGATTAGTATAGAGAGGTAGAGTTTTTTTCGTGATAGTGGTTCATTGGATAAGTGGCGTTGGCTTGCCATGAT|TGAGAAGTGTAGAATAAGTGGGA	1	0.154066662474196	0.375556752806067	0.399915574091196	N	N	3.64759957832565	2.79015461294967	2.79015461294967	splitr	0	0.0869565217391303	0	1	N	0.217391304347826	N	N	31	0	ENSG00000132570	ENSG00000198626	+	-	5	1	134343649	238129359	intron	intron	PCBD2	RYR2	134240596	237205505	+	+	0.0869565217391303	134263498	237766601	+	-	Y	1.2575464834446	1	N	SKBR3_13_2_1	9	1	8.5	8	2	2	N	N	0	1	2	0.827783467410055	0.521503584468335	0.827783467410055	0.521503584468335	0	1	0	0.60524179975777
135558	AAATGGAAGAGACGCCCCTGCTAACGGGAATGCTAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAA|GAGGATGAGGATGAAGATGAAATTGAACCAGCAGCGATGAAAGCAGCAGCTGCTGCCCCTGCCTCAGAGGATGAGGACGATGAGGATGACGAAGATGATGAGGATGACGATGACGATGAGGAAGATGATGATGATGATGAAGATGATGAGGAGGAGGAAGAAGAGGAGGAGGAAGAGCCTGTCAAAGAAGCACCTGGAAAACGAAAGAAGGAAAT	2	1	0.226190941649262	0.313727891882291	N	N	2.49187399335991	3.12928703698507	2.49187399335991	splitr	37	0.139705882352941	0.139705882352941	0	N	0.220588235294118	N	N	14698	7868	ENSG00000187514	ENSG00000115053	+	-	2	2	232578251	232348352	coding	coding	PTMA	NCL	232571605	232318242	+	-	0.139705882352941	232577160	232326377	+	+	N	-	-	Y	SKBR3_13_2_1	8	0.308510638297872	5.8	2	5	1	Y	N	0.260416666666667	0.308510638297872	5	1.4900102413381	1.42378756394529	1.4900102413381	1.42378756394529	2	-	-	0.60524179975777
139054	TTTTGAGATGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAAGTTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCACCACCACGCCCGGCTAATTTTTT|TTTTTGTATTTTTAGTAGAGACAGGGTTTCACCACATTGGCCAGGCTGGTCTCGAACTCCGGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG	1	0.977457932051343	0.704121951840997	0.776581847210919	N	Y	3.18768198605288	3.09343168491377	3.09343168491377	splitr	271	0.892857142857143	0.910714285714286	1	N	0.8125	N	N	92	0	ENSG00000158122	ENSG00000113262	+	+	9	5	99417599	178423207	utr3p	utr3p	C9orf21	GRM6	99401859	178392096	-	-	0.642857142857143	99402959	178407802	-	-	Y	-	-	N	SKBR3_13_2_1	693	1	567	441	2	1	N	N	1	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	-	0.60524179975777
104703	AGCATATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAAGTATTTAGCTGACTCGCCACACTCCACGGAAGCAATATGAAATGATCTGCTGCAGTGCTCTGAGCCCTAGGATTCATCTTTCTTTTCACCGTAGGTGGCCTGACTGGCATTGTATTAGCAAACTCA|TCACTAAACATTCTACTACTCACTCTCACT	1	0.348260990726482	0.311204357582937	0.306030290211129	N	Y	3.80297331548166	2.63785104924971	2.63785104924971	splitr	208	1	0.533333333333333	0	Y	1	N	N	121749	93473	ENSG00000198804	ENSG00000198886	+	-	MT	MT	7445	12137	coding	coding	MT-CO1	MT-ND4	5904	10760	+	+	0.466666666666667	6986	11276	+	-	N	-	-	N	SKBR3_13_2_1	8	0	5	2	2	3	Y	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
65753	GGTCCAAGAATTTCACCTCTAGCGGTGCAATACAAATGCCCCCAGCTGTCCCTCTTAATCATGGCCTCAGTTCCATAAACCAACAAAATAGAACCGCGGTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCGGCTTGGACCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTTGGGCCGCGGAACACTCAGCTAAGAGCATCGAGGG|GGCCCGAAGCACTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAGCCGCCTGGATACTGCAGCTTGGAATAATGGAATAGGACCACAGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCATATTGCACCGCTAGAGGTGAAATTCTTGGACTGGCAGTTTAGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAA	4	2.88241157263016e-05	0.883957023659923	0.810283835747011	N	N	3.52936639476796	3.50216051186033	3.50216051186033	splitr	3	0	0	0.333333333333333	N	0.0416666666666666	N	N	1	1	ENSG00000256642	ENSG00000163046	-	+	16	2	33962503	133015542	upstream	intron	NCRNA00273	ANKRD30BL	33961052	132905164	-	-	0	33963255	133012993	-	+	Y	-	0.81549815498155	N	SKBR3_13_2_1	1	1	1	1	0	3	N	N	1	1	3	1.24167520111508	0.943673152847462	1.24167520111508	0.943673152847462	2	-	0	0.60524179975777
141288	GGATGTGGCTGCTGCTTCCAATAAAAAGGCTCCAAAATAGAAGACAAATACTGTAAAATGGTAGGCAAAATCCAGGAAGTTCCAGTTAGCATCAATTTGAGCCACCATGCCAGAGAGGAACATGCCCAGAAAGAGGAGCGAAAAGAAAAACGCTGTCACGGACACAAACATGACCCATCCTTGTAGTAGAGGTAGAG|TGAATTTGAAGCTGGTATCTCCAAGAATGGGCAAACCCAAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTTGGTGTTAACAAAATGGATTCTACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCTGACACAGTAGCATTTGTGCCAATT	1	2.47502492528997e-05	0.311204357582937	0.306030290211129	N	N	3.55976477294109	3.46704205511183	3.46704205511183	splitr	1	0.00507614213197971	0	0	N	0	N	N	12786	0	ENSG00000147676	ENSG00000214199	-	+	8	2	120257913	107315132	intron	intron	MAL2	EEF1A1P12	120177273	107313787	+	-	0.00507614213197971	120233873	107314770	-	+	Y	-	1	N	SKBR3_13_2_1	11	0	11	11	2	1	N	N	0	0	2	0.60428193120934	0.413891733705027	0.60428193120934	0.413891733705027	2	-	0	0.60524179975777
26353	CTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGTTCGAGACTAGCCTGGCTAATAC|GGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGTGTGGTGGTGGGTGCCTGTAATCTCAGCTACTCGGGAGGTTGAGACAGGGAGAATTGCTTGAACCTGGGAGGCAGAGGCTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGC	1	0.773213797860988	0.899266171301115	0.897571427984624	N	Y	3.88721439801659	3.28599001835805	3.28599001835805	splitr	243	0.8875	0.7625	0.5	N	0.7375	N	N	325	117	ENSG00000139233	ENSG00000196663	+	+	12	14	66524548	102968809	utr3p	intron	LLPH	TECPR2	66516842	102829300	-	+	0.8	66517110	102922149	-	+	Y	-	1.30620284867882	N	SKBR3_13_2_1	3328	1	2399	1470	2	1	N	N	1	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	1	0.60524179975777
117758	GGCGGCCACTTCCGCTTCCGCTGGGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATC|GGAAGCTGAAGAGGGAACTACCCTTTTCATTCCGATCAATTAATACGAGAGAAAACCTGTATCTGGTGACAGAAACTCTGGAGACGGTAAAGGAGGAAACCCTGAAAAGCGACCGGCAATATAAATTTTGGAGCCAGATCTCTCAGGGCCATCTCAGCTATAAACACAAGGGCCAAAGGGAAGTGACCATCCCCCCAAATCGGGTCCTGAGCTATCGAGTAAAGC	322	0.904117110941711	0.594626845289385	0.488430112630591	N	N	3.63655728995158	3.56129235625094	3.56129235625094	splitr	14	2.22044604925031e-16	2.22044604925031e-16	0	N	2.22044604925031e-16	N	Y	485	5095	ENSG00000147687	ENSG00000073605	+	-	8	17	125551699	38077313	coding	coding	TATDN1	GSDMB	125500726	38060848	-	-	2.22044604925031e-16	125551266	38066177	-	+	Y	-	-	N	SKBR3_13_2_1	3	0	1.07368421052632	1	6	6	N	N	0	0	95	0.720171616646748	1.88734630569492	1.88734630569492	0.720171616646748	4	-	-	0.60524179975777
115824	CTTCTTCCCACTCATCCTAACCCTACTCCTAATCACATAACCTATTCCCCCGAGCAATCTCAATTACAATATATACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAAAGCCCCCGCACCAATAGGATCCTCCCGAATCAACCCTGACCCCTCTCCTTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAACCACCACCCCATCATACTCTTTCACCCACAGCACCAAT|CCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATT	3	1	0.397375327750185	0.686215388897037	N	N	2.89933642058982	2.88470975693593	2.88470975693593	splitr	17	0.188888888888889	0	0	N	0.244444444444445	Y	N	19641	3466	ENSG00000198695	ENSG00000228253	+	-	MT	MT	14673	8572	coding	coding	MT-ND6	J01415.25	14149	8366	-	+	0.188888888888889	14371	8467	+	-	N	1.05740142809649	-	N	SKBR3_13_2_1	5	0	3.1	2	10	2	N	N	0	0	10	1.88734630569492	1.20028602774458	1.88734630569492	1.20028602774458	1	1033.2	-	0.60524179975777
78058	CACATTCACCTGAGAACCAGCCATTTCTTCCTCTTCTTCCTTCTTCTCTGGGATTCCTTCTCAGGTGAGATTATCTGGACAAATCACACC|ATTTCCCAGCTTCCCGGGTGTCCAGGCTGCTTAGCTATGGATCTCCTGATACCTGCAGGTCAGAGGGCAAGAGGCTGTGGCGGCCACCTGAGCTTCCCCGAGCAAAGCACGCCGAGCACAGAAGACGACCCAGCTGAGGCTGGCAGGA	1	1	0.447538936456759	0.5	Y	Y	3.59528445727371	3.39640391403072	3.39640391403072	splitr	238	1	0.0111111111111111	0	Y	0.9	N	N	0	2	ENSG00000227671	ENSG00000232347	+	-	1	1	247372795	247405125	intron	intron	RP11-488L18.4	RP11-488L18.8	247353153	247373993	-	-	0	247365398	247373994	+	-	N	1	0.77924944812362	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	2	0.45528090707553	0.587726261861139	0.587726261861139	0.45528090707553	1	0	0	0.60524179975777
141610	TGGCCTCGTCTCCAGCCCGAACGCTGAGGCACCGATCCCGGCTCCGTCGCCGCCCGCGAGGCCCGCCTTGGCCACGGGCTCTGGAGGCCAGTGCCTCCCGCTCGCCGCCCGCTGCGCTCCTCACCCCTGCCTGCACCATCCT|CCCCTTGCCCATGCCTCCAGCTATGAAACAATTCAATTGCTTTTTTTTTTTTTTCCCAAAATAAACCTCGGCTAG	1	0.94293961408239	0.375556752806067	0.399915574091196	N	N	2.87522974699186	3.34359427943881	2.87522974699186	splitr	3	2.22044604925031e-16	0.04	0	N	0.146666666666667	N	N	83603	244	ENSG00000130600	ENSG00000128881	-	+	11	15	2022700	43213007	intron	intron	H19	TTBK2	2016406	43036550	-	-	2.22044604925031e-16	2017886	43093013	+	+	Y	-	0.254168445487234	N	SKBR3_13_2_1	15	0	14	13	2	1	N	N	0	0	2	0.786394294039552	0.430447403053228	0.786394294039552	0.430447403053228	2	-	1.5	0.60524179975777
31981	GGGGGCTTCAACCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCAGGTCGCCTGGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTATTCGTAGGTTCAGTACCATT|GGTGGGCATGGAAGTCAGAATCCACTAAGGAGTGTTTAACAACAAAGAATCAACTCGCCCTGAAAAATGGATGGTACTGAAACATTGGGCCCATACCCGGCCATTGCCAGCAGTTGAGAGTGGATGGGAGTGGTGAGGGTGGTCGCTCCCGCTGGAGCCCCGAGGATGCTATGCTGCTATGAGTGGGAGGACCGCTGCAATGAGCCTTGAAGCCTTGGGCATGAGCCTGGGTGGAGCTGTCCCAGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCAGTTGAAGAT	1	8.03878275270039e-09	0.526775457519482	0.600084425908804	N	N	3.45181824439233	3.62295434849776	3.45181824439233	splitr	5	0	0	0	N	0	N	N	3	0	ENSG00000230021	ENSG00000251948	-	+	1	19	659930	24184165	intron	upstream	RP5-857K21.4	AC092279.1	536816	24184075	-	-	0	568444	24184393	-	+	Y	0.828962371721779	-	N	SKBR3_13_2_1	6	1	3.25	2	4	2	N	N	0	1	4	1.27478653981148	0.529781419142435	1.27478653981148	0.529781419142435	2	0	-	0.60524179975777
138652	GTGAAAGTGGTTTGGTTTAGACGTCCGGGAATTGCATCTGTTTTTAAGCCTAATGTGGGGACAGCTCATGAGTGTAAGACGTCTTGTGATGTAATTATTATACGAATGGGG|GCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAAGGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGTGCTGGCTATGC	4	1	0.697119769803096	0.348031806327548	N	N	3.43953999775712	3.48696720636436	3.43953999775712	splitr	15	0.0270270270270269	0.0270270270270269	0	N	0.0990990990990991	N	N	794	0	ENSG00000175387	ENSG00000249264	+	-	18	4	45457515	106407237	intron	intron	SMAD2	AC004066.1	45357922	106405855	-	+	0.0540540540540542	45379754	106406774	+	-	Y	0.235886398771963	1	N	SKBR3_13_2_1	48	0	31.6363636363636	18	11	1	N	N	0	0	11	0.951950987521563	1.05128500361077	1.05128500361077	0.951950987521563	2	5.81818181818182	0	0.60524179975777
37872	GTTAATAGTTGATATTGCTAGTGTGGCGCTTCCAATTAGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGGTTAGGCGTACGGCCAGGGCTATTGGTTGAATGAGTAGGCTGATGGTTTCGATAATAACTAGTATAGGGATAAGGGGTGTAGGTGTGCCTTGTGGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAAAGCCTATAAT|CACTGCGCCCGGCCCCAAGTGATCTATTCTTGCCATGACTGTTAACTAAACATGGTGACAGGATTGCATTTTCTTTACATTAGATTTGAAAACCGATGTTGGTTTTGGGAGATTGCTGCAATTTTTAGGTGACTTCTCTTTCAGACTCTGAAGAAGAAGCTATGGAGACTACACCAGCCAAAGGAAAGAAAGCTGCAAAAGTTGTTCCTGTGAAAGCCAAGAACGTGGCTGAGGATGAAGATGAAGAAGAGGATGATGAGGACGAGGATGACGACGACGACGAAGATGATGAAGATGATGATGATGAAG	1	4.12148024272075e-11	0.254583648908217	0.223418152789081	N	N	3.22639416565101	3.69359248957888	3.22639416565101	splitr	11	0	0	0	N	0	N	N	3	7868	ENSG00000230021	ENSG00000115053	-	+	1	2	659930	232348352	intron	intron	RP5-857K21.4	NCL	536816	232318242	-	-	0	569415	232325721	-	+	Y	0.828962371721779	1.11832668852747	N	SKBR3_13_2_1	2	0.929577464788732	2	2	2	1	N	N	0	0.929577464788732	2	0.662226773928044	0.587726261861139	0.662226773928044	0.587726261861139	2	0	424	0.60524179975777
135314	GAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGACG|TTACAGGCCCAAAAACTGCGACTGGCATACACAAGGAGCTCTCATTATGGTGGGTCTCTGCCCAATGTTAACCAGATTGGCTCTGGCCTGGCCGAGTTCCAGAGCCCCCTCCACTCACCTTTGGATTCATCTCGGAGCACTCGGCACCATGGGCTGGTGGAACGGGTGCAGCGAGATCCTCGAAGAATGGTGTCCCCACTTCGCCGATACA	6	0.277156064315381	0.378712451384142	0.310270059984405	Y	Y	3.56914214935951	3.43681151080804	3.43681151080804	splitr	332	1	0.00826446280991722	0	Y	0.669421487603306	N	Y	4895	781	ENSG00000143570	ENSG00000160741	+	-	1	1	153940188	153931101	coding	coding	SLC39A1	CRTC2	153931575	153920145	-	-	0	153934696	153927642	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	2	Y	Y	0	0	4	0.786394294039552	1.39895405992299	1.39895405992299	0.786394294039552	4	-	-	0.60524179975777
139775	TCTTTTCCTTGCTCCAGACAAGTGATCAGGTCTGGCTTAGAGACAGCAATACCC|AGGGAGACCAGGTTTCTGTAGTTTTCTAACATCACGTCCCTATACAGATTCTGCTGAGCAGGGTCCAGATAGCTCCACTCCTCCGGAGAGAATTCTATGGCCACATCCCTGAATATCAACAGTCCCTGGCAAAGAAAAAACACATACGTATCAAGTGGTCATGGGC	4	0.630440055365886	0.807806667617636	0.687332409693668	N	Y	3.66592259835483	3.50575423470996	3.50575423470996	splitr	176	0.888888888888889	0	0	N	0.185185185185185	N	N	58	0	ENSG00000198039	ENSG00000227671	-	-	7	1	64391344	247372795	coding	intron	ZNF273	RP11-488L18.4	64330550	247353153	+	-	0.888888888888889	64378084	247363371	-	-	Y	-	1	N	SKBR3_13_2_1	11	0	8	7	4	1	N	N	0	0	4	0.546337088490636	1.01817366491437	1.01817366491437	0.546337088490636	2	-	0	0.60524179975777
110375	ATCGAAACCGCAAACATATCATACACAAACGCCTGAGCCCTATCTATTACTCTCATCGCTACCTCCCTGACAAGCGCCTATAGCACTCGAATAATTCTTCTCACCCTAACAGGTCAACCTCGCTTCCCCACCCTTACTAACATTAACGAAAATAACCCCACCCTACTAAACCCCATTAAACGCCTGGCAGCCGGAAGCCTATTCGCAGGATTTCTCATTACTAACAACATTTCCCCCGCATCCCCCTTCCAAACAACAATCC|CCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC	1	3.315149258036e-06	0.899266171301115	0.897571427984624	N	N	2.79574859582564	2.8167203972172	2.79574859582564	splitr	4	0.0167364016736403	0.0167364016736403	0	N	0.0585774058577406	Y	N	54817	58402	ENSG00000198786	ENSG00000198712	+	-	MT	MT	14148	8269	coding	coding	MT-ND5	MT-CO2	12337	7586	+	+	0.0167364016736403	13783	7707	+	-	N	-	0.577149746109304	N	SKBR3_13_2_1	6	0	4	2	2	2	Y	N	0	0	2	0.827783467410055	0.562892757838837	0.827783467410055	0.562892757838837	1	-	6151.5	0.60524179975777
120355	GGAGGTGGAGGAGGACCAGGTGGGGGTGGCGGGGGAGGAGGAATTGGCATTCTTGCCCTGCTCCCAGTTGGCACTGTTCTCTCTCCGTCTTTATTTGTACCTTTAGGTCATTCATATACCTGGCCGCAGCTGCTCTGGGAGCGAATCCTCTGCCGCCTACACTCCGGCTTCGTCCTGTCCTGCTCGCCCCCCGGCAAGCTCTTTCTC|GCCGTCGCCGCCGCCCCCGCCGCCGCCCCCGCCCCCCCCGCCGCCGCCACCGCCCCCGCCGCCGCCGCCGTG	3	0.802538879556228	0.304103290313704	0.548268873166959	N	N	3.09248674342652	1.75635460653274	1.75635460653274	splitr	56	0.597222222222222	0.597222222222222	0	N	0.819444444444444	N	N	4455	1	ENSG00000171475	ENSG00000184486	-	+	17	6	38440388	99286660	utr5p	coding	WIPF2	POU3F2	38375574	99282580	+	+	0	38375657	99283019	-	+	Y	-	1.22675736961451	N	SKBR3_13_2_1	5	0.923076923076923	3	1	1	1	N	N	0	0.923076923076923	2	0.554614923164737	0.430447403053228	0.554614923164737	0.430447403053228	1	-	0	0.60524179975777
51770	CCCATCTTCAACTGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTAC|TACCACCAAGATCTGCACCTGTGGCCTATCCAC	186	0.00052356447821244	0.95579554915018	0.993491623697513	N	N	3.61936062564813	3.59001826628863	3.59001826628863	splitr	73	0	0	0.6	N	0.575757575757576	N	N	0	0	ENSG00000251948	ENSG00000252318	+	-	19	2	24184165	133038738	intron	intron	AC092279.1	AC097532.1	24184075	133038647	-	-	0.636363636363636	24184130	133038703	+	-	Y	1	1	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	1	5	0.620837600557541	0.670504608602144	0.670504608602144	0.620837600557541	2	0	0	0.60524179975777
136732	GAGTGACATCTGGGCCGGACCAGCTGGTGCTGCGCGGCGCAGGTCTCTCGGTTTCCTCATCTGCTGCCTCTCCAGACTTCTGCCAGAACATTGCACGCGACAGTTTCAGGCACAGAACTGACTGGCAGCAGGGGCTGCTCCACGAGTGGGAATTTGCTCCAGCACTTCACGGACTGCAAGCGAGGCACTTGCTAACTCTTG|GGACATGCGGAAGCACGTGGCCATGACCCTGCTGGACACAGAGCAGTCGTATGTGGAGTCGCTGCGCACCCTGATGCAGGGCTACATGCAGCCGCTGAAGCAGCCAGAGAACTCCGTGCTCTGTGACCCTTCACTGGTGGACG	2	0.0453431922686849	0.332952788415832	0.5	Y	Y	3.53568860456667	3.43631699726808	3.43631699726808	splitr	344	0	0.0069930069930072	0	Y	0.0069930069930072	N	Y	852	679	ENSG00000171631	ENSG00000110237	+	-	11	11	73009662	73080136	utr5p	intron	P2RY6	ARHGEF17	72975550	73019334	+	+	0	72983511	73057928	+	-	N	-	-	N	SKBR3_13_2_1	1	0.161538461538462	1	1	0	1	N	Y	0.161538461538462	0	2	0.827783467410055	0.695338112624446	0.827783467410055	0.695338112624446	4	-	-	0.60524179975777
134960	CTTCATCCTCCTCTTCGGCAGCTCTCTTCAGCGCGGGCCCTTCATCATCCTCTTCTTCTTCTTCCTCATCTTCTTCTTCCCCTTCATCTTCCTCCTCTCCATCCTCGGCAGTTTCTTCTTCTTCCTCCTCAGCCCCG|TCCTCCTCCTCCTCCTCCTCCTCTTCTTCCTCCTCCTCTTCCTCTTCTTCTTCTTCCTCCTCATCTTCCTCCTCCTCGTCGTCTTCCTCCCCTTCCCCTGCTAAGCCTGGCCCTCAGGCCTTGCCCAAACCTGCAAGCCC	3	0.871614217943042	0.112181603672907	0.157722588470309	N	N	3.0065671685668	1.84474577981852	1.84474577981852	splitr	30	0.072992700729927	0.0802919708029197	0	N	0.18978102189781	N	N	2107	5610	ENSG00000159335	ENSG00000167978	-	-	12	16	6880118	2821411	coding	coding	PTMS	SRRM2	6874682	2802330	+	+	0.072992700729927	6879098	2819119	-	-	Y	-	1.1524519658456	N	SKBR3_13_2_1	2	0.5625	1.5	1	1	1	N	N	0.306122448979592	0.5625	2	0.811227798061854	0.794672128713653	0.811227798061854	0.794672128713653	2	-	45	0.60524179975777
34976	TGGGGTGGGTTTTGTGTGTTCAAACTGTCATTTTATTTTTACGTTGTTAGATATAGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGCAGGTAGAAGTAGAGGTTAAGGAGGGTG|GGGGTGGCTATGGTGGGGACAGAGGCGGCGGCTATGGTGGGGACAGAGGAGGCGGCTATGGAGGAGACCGAGGAGGTGGCTATGGAGGAGATCGAGGTGGCTATGGAGGAGACCGAGGTGGAGGCTATGGTGGAGACCGAGGAGGCTATGGAGGAGATCGAGGAGGTTACGGAGGAGATCGAGGAGGTTATGGAGGAGATCGAGGAGGCTATGGAGGAGACAGAAGCCGGGGGGGCTATGGAGGAG	1	0.0793477576688922	1	0.935920242646516	N	N	3.16633430462754	3.10619503375109	3.10619503375109	splitr	22	0.0254237288135594	0.0254237288135594	0	N	0.0254237288135594	N	N	0	1731	ENSG00000225630	ENSG00000172660	-	-	1	17	566063	34174237	intron	coding	RP5-857K21.8	TAF15	565020	34136488	+	+	0.0254237288135594	565874	34171658	-	-	Y	1	0.886542031010488	N	SKBR3_13_2_1	2	0.813793103448276	2	2	3	1	N	N	0	0.813793103448276	3	0.90228397947696	0.993340160892066	0.993340160892066	0.90228397947696	2	0	53.3333333333333	0.60524179975777
136735	TGTGGGCCGGGCAGAAGGTCTTGGAGATGGCCGACATCAGCTTGGGTTTGGCCCCCTTCAGCACTGCCTCCGGCTCCTCCGCAAGCACCTGCACGACGACTTTGCCAATGTGCTTCCCTTGGGCCATGTAGCGGAAGGCGTCCTCCACCTGGGCCCCATGGAACACCGTGCACTTGAGGGGCCGTACCACCCCATCCCGGATGCCGGCCTGCACAAGCGC|CCAAGGGAACGGACTTGGCGGAATCAGCGGGGAA	1	1	0.390564714822603	0.421349522516249	N	N	3.4267624394105	3.39731985435217	3.39731985435217	splitr	3	0.0882352941176471	0.0882352941176471	0	N	0.0882352941176471	N	N	94538	0	ENSG00000169710	ENSG00000226958	-	-	17	X	80056106	108297792	coding	intron	FASN	RN28S1	80036215	108297361	-	-	0.0882352941176471	80041209	108297561	+	-	Y	-	1	N	SKBR3_13_2_1	5	1	4	3	2	1	N	N	0	1	2	0.827783467410055	0.811227798061854	0.827783467410055	0.811227798061854	2	-	0	0.60524179975777
130459	GATATAGGAGATGCCACCCAAGTTTATGTAGCGTTCTTGGTTTACCTGGACCTCATGGAAAGCAAAAGCTGGCATGAAGTAAACTGTGTAGGATTACCAGAACTCCAGCTCATCTGCCTTGTTGGTACTGAGATAGAAGGGGAGGGGTTACAGACTGTGGTGCCTACCCCCATCACTGCTTCCCTCAGCCATAA|CAGTTGTACACAGAAGAAAGCCCATATGAGGACACAGCAAGAAGGTGGCTGTCTTCAAGCCAAGAAGAGAGGCCTCATCAGAGATGGAATGTTCCTGCACTTCGGT	8	1	0.93383856532962	0.433754919601629	N	Y	3.42424163912411	3.3241983368464	3.3241983368464	splitr	300	1	0.0283018867924527	0	Y	1	N	N	239	0	ENSG00000198860	ENSG00000233084	+	-	1	1	184043346	249231242	coding	upstream	TSEN15	AL672183.2	184020811	249230780	+	+	0	184023994	184064821	+	-	N	-	-	N	SKBR3_13_2_1	4	1	1.75	1	5	1	N	N	0	1	12	1.5313994147086	0.645671104579843	1.5313994147086	0.645671104579843	2	-	-	0.60524179975777
118133	AAATTATTTTGGAAATTGAGTCTGAAGCACTCTCGCACACACAGTGATTCCCTCCTCCCGTCACTCCACGCAGCTGGCAGAGAGCACAGTGATCACCAGCGTGAGTGGTGGAGGAGGACACTTGGAT|ATTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCATTCTGTCGCCC	4	0.280696313700176	0.436317047342443	0.78268225771684	N	N	3.4944157718888	2.41581601582886	2.41581601582886	splitr	37	0.48	0.48	0	N	0.48	N	N	7461	1541	ENSG00000092820	ENSG00000110696	+	-	6	11	159240444	16778649	utr3p	intron	EZR	C11orf58	159186773	16634679	-	+	0.48	159187356	16777810	-	-	Y	-	-	N	SKBR3_13_2_1	80	0.490196078431373	40.5	1	1	1	N	N	0	0.490196078431373	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	2	-	-	0.60524179975777
71763	GCCAGCGACCTCCCGGTTCAATTCTTCAGTCCGGCTGGTGAACCAGGCTTCAGCATCCTTCCGGTTCTGCTCGGCCATGACCTCATATTGGCTTCGCATGTCACTCAGGATCTTGGCGAGATCGGTGCCCGGAGCGGAATCCACCTCCACACTGACCTGGCCTCCCACTTGGCCCCTCAGCGTACTGATT|TCCTCCGACCCCCTAACGACCCCCCTCCTAATACTAACTACCTGACTCCTGCCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAATGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATGACATTCACAGCCATAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCCTGGCTATCATCACCCGATGAGGCAACCAACCAGAACGCCTGAACGCAGGTACATACTTCCTATTCTACACCCTAGTAGGCTCCCTCCCC	1	3.0539898292391e-08	0.526775457519482	0.600084425908804	N	N	3.53039946453785	2.78846786417054	2.78846786417054	splitr	8	0	0	0	N	0	N	N	58670	31	ENSG00000171345	ENSG00000132570	-	+	17	5	39684560	134343649	coding	intron	KRT19	PCBD2	39679869	134240596	-	+	0	39680790	134263558	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	4	0	3	2	2	2	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	1	0.60524179975777
140339	CACAAAATGGCGGCGGCGGCGGCGGCGGC|GGCGGCTGCAGCTACGAACGGGACCGGAGGAAGCAGCGGGATGGAGGTGGATGCAGCAGTAGTCCCCAGCGTGATGGCCTGCGGAGTGACTGGGAGTGTTTCCGTCGCTCTCCATCCCCTTGTCATTCTCAACATCTCAGACCACTGGATCCGCATGCGCTCCCAGGAGGGGCGGCCTGTGCAGGTGATTGGGGCTCTGATTGGCAAGCAGGAGGGCCGAAATAT	1	1	0.447538936456759	0.5	N	Y	2.5352085350865	3.23527702852946	2.5352085350865	splitr	26	0.517241379310345	0.517241379310345	0	N	0.724137931034482	N	N	911	2304	ENSG00000221978	ENSG00000168090	+	-	1	7	1334708	99689823	coding	coding	CCNL2	COPS6	1321091	99686577	-	+	0.517241379310345	1334664	99686631	-	-	Y	-	-	N	SKBR3_13_2_1	2	0.42	1.6	1	3	1	N	N	0.42	0	5	0.413891733705027	1.15061901969998	1.15061901969998	0.413891733705027	1	-	-	0.60524179975777
112928	GTTTTATGGGGCTCCCTGGCTCTGGGAGTGGCAGTGAGGCACGCTGAGGAAGGGCTGCCATCTTGGTTTTGTGGCAACCTGCCGTATGACCGTGGGCAAGTGCCTTCTCCTGTTTGGGCATCTGTCTTCTGCTCTGTAACATCAAGGGGCTGGGCTGGATGATCTCTCAGCGTCTTCCAACCTCTATGGTCTAAGACGGCCTTCCCCACTCCAGCACTGCCTCAAACTGGGATGATGAGGACAGTAAAAGGGCGTTCTTTTTT|TTTTTTTTAAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCA	2	0.593953103748137	1	0.97388564551795	N	Y	3.36919803112309	3.48639814491089	3.36919803112309	splitr	84	0.942307692307693	0.942307692307693	0.5	N	0.942307692307693	N	N	6037	661	ENSG00000197879	ENSG00000184014	+	+	17	11	1395995	9286937	utr3p	intron	MYO1C	DENND5A	1367480	9160372	-	-	0.942307692307693	1368115	9268784	+	+	Y	1.09179419013046	3.60024082130975	N	SKBR3_13_2_1	5	0.692307692307692	4.5	4	2	1	N	N	0.673076923076923	0.692307692307692	2	0.827783467410055	0.538059253816536	0.827783467410055	0.538059253816536	2	86.5	7	0.60524179975777
135228	GGTAGGAGCAGTGTGGTAAGGGCGATGAGTGTGGGGAGGAATGGGGTGGGTTTTGTGTGTTCAAACTGTCATTTTATTTTTACGTTGTTAGATATAGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGCAGGTAGAAGTAGAGGTTAAGGAGGGTGATGATGGCTATGAT|GGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAG	1	0.6758502527496	0.375556752806067	0.399915574091196	N	N	3.1850280470173	3.32064446679012	3.1850280470173	splitr	8	0.0851063829787234	0.021276595744681	0	N	0.0319148936170212	Y	N	0	0	ENSG00000225630	ENSG00000162669	-	+	1	1	566063	91870426	intron	intron	RP5-857K21.8	HFM1	565020	91726323	+	-	0.0851063829787234	565860	91853132	-	+	N	1	1	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.827783467410055	0.728449451320848	0.827783467410055	0.728449451320848	1	0	0	0.60524179975777
77503	GAGCAATCTCAATTACAATATATACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAAAGCCCCCGCACCAATAGGATCCTCCCGAATCAACCCTGACCCCTCTCCTTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAACCACCACCCCATCATACTCTTTCACCCACAGCACCAATCCTACCTCCATCG|CACTAATTTACACTCACAACACCCTAGGCTCACTAAACATTCTACTACTCACTCTCACTGCCCAAGAACTATCAAACTCCTGAGCCAACAACTTAATATGACTAGCTTACACAATAGCTTTTATAGTAAAGATACCTCTTTACGGACTCCACTTATGACTCCCTAAAGCCCATGTCGAAGC	2	0.000346099738033539	1	0.97388564551795	N	N	3.13908856892656	3.03226839610352	3.03226839610352	splitr	22	0.0497237569060772	0.00552486187845302	0	N	0.287292817679558	Y	N	19641	93473	ENSG00000198695	ENSG00000198886	-	-	MT	MT	14673	12137	coding	coding	MT-ND6	MT-ND4	14149	10760	-	+	0.0497237569060772	14384	11247	+	-	N	-	-	N	SKBR3_13_2_1	2	0	2	2	2	4	N	N	0	0	2	0.827783467410055	0.463558741749631	0.827783467410055	0.463558741749631	2	-	-	0.60524179975777
128582	AGGTTGGACTCTTCACAGAAATTGGGCCCATGTCTTGCTTCATCTCTCGACATTCCATCCCTTCAGAGATGGAGTTTGATCCTAACTCCAACCCACCATGTTACAAGACAATGGATGAGGATATTG|CCAGAGAAGGTCACATGGATGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACATGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCATGGAACACATCCACAAGCTGAAGGCAGACAAGGCC	4	0.695361570913106	0.167842858810016	0.335560000302618	N	N	3.49015970162987	3.29693902077628	3.29693902077628	splitr	2	0.0158730158730159	0.0158730158730159	0	N	0.0555555555555556	N	N	581	129759	ENSG00000168002	ENSG00000108298	+	-	11	17	62534182	37360980	coding	coding	POLR2G	RPL19	62529016	37356536	+	+	0.0158730158730159	62533131	37359274	+	-	Y	-	-	N	SKBR3_13_2_1	8	0	5	2	2	1	N	N	0	0	2	0.612559765883441	0.827783467410055	0.827783467410055	0.612559765883441	1	-	-	0.60524179975777
61857	TATCTCGTATAGATTTCTTCACTGGCGCTTTTTCTTCAGCTTCCTCATCATCAAAATCATCATCATCATCATCTTCATCATCATCCTCT|CTTTCTTCTTCCCACTCATCCTAACCCTACTCCTAATCACATAATCTATTCCCCCGAGCAATCTCTAGTACAATATACACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAA	1	0.127813156876704	0.447538936456759	0.5	N	N	2.29031386779727	2.88098289533711	2.29031386779727	splitr	6	0.0674157303370788	0	0	Y	0.134831460674157	N	N	14119	31	ENSG00000181163	ENSG00000132570	-	+	5	5	170838141	134343649	coding	intron	NPM1	PCBD2	170814120	134240596	+	+	0.0674157303370788	170819965	134260381	-	+	N	-	1.2575464834446	N	SKBR3_13_2_1	20	0.308823529411765	13	6	2	1	N	N	0.308823529411765	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	1	0.60524179975777
113134	AATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACATGTATCA|CACCTTCATCTTCAGGCTGGGCATGTTCTCCACGGCAGTGTCCAGGCAGGCCTTGAGTGCCGGGGAGTCCAGGAGGCCGCTGAGCAGAGGGTCCTCTGGCAGCTTGGGCCTCTCCTGGGCCAGCACCTGCGCCAGCTCCAGCTGCAGGTTCCCGTTGAGCTGAAGCCTGCAGGCAGCCGACAACAGCCGGGGCAGTTCCTGCTGTGAGGGGTCCCGGGGGATCTGGGCCCCATCCAGTCCGGGCACCACCATCTTCAGCCCCTGCT	3	0.295491376044874	0.155813141901902	0.253202127346121	N	N	3.64081336021051	3.50529022639353	3.50529022639353	splitr	4	0	0	0	Y	0	N	N	129759	94538	ENSG00000108298	ENSG00000169710	+	+	17	17	37360980	80056106	coding	coding	RPL19	FASN	37356536	80036215	+	-	0	37360335	80044136	+	-	N	-	-	N	SKBR3_13_2_1	6	0	4	2	2	1	N	N	0	0	2	0.794672128713653	0.827783467410055	0.827783467410055	0.794672128713653	3	-	-	0.60524179975777
73047	CCATTTCTTTCATGTTGTGGGTTCTGGGAGCCCAGAGGGCAGCCATAGTGTGCCGACTCCGTGGAGGAAGTAAAGAAACAGACCCGCTTCTTGCC|GCAGCCCCTCCCAGCCTGCCCCTCCTGCGGCTGCCCCAGAGCCCAGCGGGGGAGGCTGCTGTGCAGGGTAGCACAGGGAACGGGAGACCCACCTGAGGCTCAGCCCTAGCCCTCAACCCACCTGCGGGGGAGTTTACTGCCTAGGGACCCCCCTTGCCCATGCCTCCAGCTACAAAACAATTCAATTGCTTTTTTTTTTTGGTCCAAAATAAAACCTCAGCTATCTCTGCCAAAAAAAAAAAATAGTGTTTG	2	0.00232352691447001	0.170189729447764	0.209300629116717	N	N	3.62192127872787	2.79317859517609	2.79317859517609	splitr	17	0	0	0	N	0	N	N	83603	0	ENSG00000130600	ENSG00000158163	-	+	11	3	2022700	137834660	intron	intron	H19	DZIP1L	2016406	137780832	-	-	0	2017397	137820310	+	+	Y	-	1	N	SKBR3_13_2_1	3	0	3	3	3	1	N	N	0	0	3	0.802949963387753	0.430447403053228	0.802949963387753	0.430447403053228	2	-	0	0.60524179975777
129176	AGGAGGAGGAAGGAGAAGAGGAAGAAGAGGAAGCAGAAGAAGAGGAGGAGGAAGATGAGGAAGAGGAGGAAGAAGAGGAGGAGGAGGAGGAAGAAGA|CAAGAAACGCAAAGAGGAGGAGGAGGCAGAGGACAAGGAGGATGATGAGGACAAAGATGAGGATGAGGAGGATGAGGAGGACAAGGAGGAAGATGAGGAGGAAGATGTCCCCGGCCAGGCCAAGGACGAGCTGTAGAGAGGCCTGCCTCCAGGGC	3	0.857250964338357	0.213795359019634	0.377851049121103	N	N	1.90537470229545	2.63668784986417	1.90537470229545	splitr	16	0.164948453608248	0.164948453608248	0	N	0.164948453608248	N	N	2709	9938	ENSG00000100401	ENSG00000179218	+	-	22	19	41698963	13055304	coding	coding	RANGAP1	CALR	41641615	13049414	-	+	0.164948453608248	41650382	13054592	-	-	Y	-	1.12346974262507	N	SKBR3_13_2_1	1	1	1	1	0	1	Y	N	1	0.511111111111111	2	0.736727285994949	0.827783467410055	0.827783467410055	0.736727285994949	1	-	566	0.60524179975777
61432	AAAGCAGCATCAGCAGCAACATTTCCCAGAGAAGTATCTTGACCTTTGGCCCATGACTAGTTTCTCCATATCAATCATGAGATATACACATC|CGTTCCGGTCTGGCGCTCCCTTTTCTCCACACCCACACGCCTCCCGCTCCACGCTGGCGGCGCAGCTGCTCCCGCTGCCACAGCCGCCACCGCCGCCGAAGCTCGCGCCGCCGCCGCTGCCG	1	0.764937316172662	0.899266171301115	0.897571427984624	N	Y	3.33631354778371	3.20910421539172	3.20910421539172	splitr	214	1	0	0	Y	1	N	N	521	0	ENSG00000070961	ENSG00000227059	+	-	12	12	90049844	133812681	upstream	downstream	ATP2B1	AC226150.2	89981828	133794898	-	-	0	90049885	90102997	+	-	N	-	-	N	SKBR3_13_2_1	1	0.447368421052632	1	1	0	2	N	N	0	0.447368421052632	2	0.430447403053228	0.827783467410055	0.827783467410055	0.430447403053228	1	-	-	0.60524179975777
136710	AGGATGGTGGCGTACACCCGCCGGGCCAGGGACTTCTTGGTCAGCAGGACGGCCACCACACCCTCCGAGCGGCAGTACCCATTCCCCGCTGTGTCGAAGGCCTTGCAGGTGCCCTCGGGGCTGAGCATCCCCAGCCTCAAGAACTGCACGGAGGTGTTGGGCTTCAGCAGGACATT|GATGCCCCCCACCCTACCACACATTCGAAGAACCCGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGCTGGTTTCAAGCCAACCCCATGGCCTCCATGACTTTTTCAA	1	0.837295245289053	0.254583648908217	0.223418152789081	N	N	3.6272104187567	3.37448717115191	3.37448717115191	splitr	12	0.0967741935483872	0.0967741935483872	0	N	0.0967741935483872	N	N	94538	0	ENSG00000169710	ENSG00000237973	-	-	17	1	80056106	567996	coding	intron	FASN	RP5-857K21.6	80036215	566454	-	+	0.0967741935483872	80051185	567944	+	-	Y	-	1	N	SKBR3_13_2_1	2	0.779411764705882	2	2	3	1	N	N	0	0.779411764705882	3	1.14234118502588	0.562892757838837	1.14234118502588	0.562892757838837	2	-	0	0.60524179975777
137378	GGCCAATTACACGACTGCAAAGCTAGAGCTGCCAACAGGGCTCCAGGGAGCTTGGCTTCTGTAGAAGTTCTAAGGAAGCGGTACGAACTCCACGGCGGTGGGGCGCTAACTAGCAGGGACCCCTGCAAGTGTTGGTCGGGGGCCTCGAGCTGCCTGAGCTGACACGAGGGGAGGGGTCTGTGTAGCCAACAGGTGACCGAAGGGCTTGCCTGCCCACAGCTTACTTGGCCAAGGGGTTTCTGAAGTTCCTGCCGGCAAACTTAGCCTTGCTGCCCAGCTCCTCTTCAATTCTGAGGAGCTGGTTGTACTTGGCCAAGCG|AGCCTGTGGCCCAGGCAAGTTGACACATAAAATTAGCCATCACAAGCATATAAATGGGATCATAGAATATGTAAACTTTAAGAGTGACTCCTTTCACTTCATAAATGCATTTGTGATACATTCAAGTTATTGTGTGTATCAATAGTTTTGCTCTATGAAAACACCATTAAGAAAATAAAAAGACATCGCGAAGGCCCACGGCGGGTGTTGACGTGATGTGATTTCTGCCCAGTGCTCTGAATGTCAAACTGAAGAAATTCAGTGAAATGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCTAAATGCCTTGTCATCTAATTAGTGA	1	1.26331208502239e-18	0.311204357582937	0.306030290211129	N	N	3.8333716936548	3.56232542602083	3.56232542602083	splitr	0	0	0	0	N	0	N	N	37212	0	ENSG00000074800	ENSG00000252248	-	-	1	7	8939308	68527457	coding	upstream	ENO1	AC093693.1	8921061	68527371	-	+	0	8922974	68527200	+	-	Y	-	-	N	SKBR3_13_2_1	12	1	10	8	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	-	0.60524179975777
140956	CGCTCAGCTCGCTCCTCTGCATCATCTGCCTGCTGCTGCAGAACCTGGATCTTGCGCTTCACCGCCTCGATGGTGGTGATCCCAGCCATGGTGCCCACCCAGCTACTGCTCGCGCTCCGGTTCCTGCC|CCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCATCATCACCCTCCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCAC	1	1	0.254583648908217	0.223418152789081	N	N	3.36720643949681	3.31791597984103	3.31791597984103	splitr	6	0.0468750000000001	0.0312499999999999	0	N	0.0468750000000001	Y	N	5925	0	ENSG00000143549	ENSG00000225630	-	-	1	1	154167124	566063	utr5p	intron	TPM3	RP5-857K21.8	154127784	565020	-	+	0.0468750000000001	154155634	565784	+	-	N	-	1	N	SKBR3_13_2_1	14	0	10	6	2	1	N	N	0	0	2	0.488392245771932	0.45528090707553	0.488392245771932	0.45528090707553	1	-	0	0.60524179975777
125117	GTGCATCCTTCCCACGCTGGTACTTTGACGTGGAGAGGAACTCCTGCAATAACTTCATCTATGGAGGCTGCCGGGGCAATAAGAACAGCTACCGCTCTGAGGAGGCCTGCATGCTCCGCTGCTTCCGCCAGCAGGAGAATCCTCCCCTGCCCCTTGGCTCAAAG|GCCCTGGAGCCCACCTCCCAGAAGCCCGGTGTGGGGGCGGGCCACGGGGGAGATCCCAAGCTCAGTCCCCACAAAGTTCAGGGCCGGTCGGAGGCAGGGGCAGGTCCGGGTCCAAAGCAAGGACACCACAGCTCTTCCGACTCCAGCAGCAGCTCCAGCGATTCGGACACGGATGTGAAGTCCCACGCTGCTGGCTCCAAGCAGCACGAGAGCATC	5	0.577541692038044	0.624241887176156	0.793809624211707	N	Y	3.31059539539258	3.17151839151932	3.17151839151932	splitr	380	1	0	0	Y	1	N	Y	5703	459	ENSG00000167642	ENSG00000167644	+	-	19	19	38783253	38795646	coding	coding	SPINT2	C19orf33	38755098	38794804	+	+	0	38781215	38795015	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	Y	N	0	0	5	1.39067622524889	1.15889685437408	1.39067622524889	1.15889685437408	4	-	-	0.60524179975777
123640	AATGATGGTTGTCTTTGGATATACTACAGCGATGGCTATTGAGGAGTATCCTGAGGCATGGGGGTCAGGGGTTGAGGTCTTGGTGAGTGTTTTAGTGGGGTTAGCGATGGAGGTAGGATTGGTGCTGTGGGTGAAAGAGTATGATGGGGTGGTGGTTGTGGTAAACTTTAATAGTGTAGGAAGCTGAATAATTTATGAAGGAGAGGGGTCAGGGTTGATTCGGGAGGATCCTATTGGTGCGGGGGCTTTGTATGATTATGGGCGTTGATTAGTAGTAGTTACTGGTTGAACATTGTTTGTTGGTGTATATATTGTAATTGAGATTGCTCGGGGGAATAG|GTTATAATTAAGGAGATTTGTAGGGAGATTAGTATAGAGAGGTAGAGTTTTTTTCGTGATAGTGGTTCACTGGATAAGTGGCGTTGGCTTGCCATGATTGTGAGGGGTAGGAGTCAGGTAGTTAGTATTAGGAGGGGGGTTGTTAGGGGGTCGGAGGAAAAGGTTGGGGAACAGCTAAATAGGTTGTTGTTGATTTGGTTAAAAAATAGTAGAGGGATGATGCTAATAATTAGGCTGTGGGTGGTTGTGTT	1	1.83262048750604e-11	0.800133926999915	0.844771979185218	N	Y	3.34785034969775	2.88160538995306	2.88160538995306	splitr	590	1	0.00398406374501992	0	Y	0.0876494023904383	N	N	19641	93473	ENSG00000198695	ENSG00000198886	+	+	MT	MT	14673	12137	coding	coding	MT-ND6	MT-ND4	14149	10760	-	+	0	14150	11085	-	+	N	-	-	N	SKBR3_13_2_1	2	0	1.5	1	1	1	N	N	0	0	2	0.827783467410055	0.637393269905742	0.827783467410055	0.637393269905742	4	-	-	0.60524179975777
117826	GAGAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAAC|AAAAAAAAAAAAAGAGTCACCTTCTACTGCAGATGAGA	3	0.711213146844781	0.090523917043459	0.112587901998213	N	Y	3.23999710710482	3.16833491427046	3.16833491427046	splitr	29	0.289473684210526	0.289473684210526	0	N	0.526315789473684	N	N	14698	0	ENSG00000187514	ENSG00000213753	+	+	2	19	232578251	59111168	utr3p	upstream	PTMA	AC016629.2	232571605	59084870	+	+	0.289473684210526	232577585	43181937	+	+	Y	-	-	N	SKBR3_13_2_1	126	0.470588235294118	48.5	3	4	1	N	N	0.434782608695652	0.470588235294118	4	0.951950987521563	0.422169568379128	0.951950987521563	0.422169568379128	1	-	-	0.60524179975777
138509	AATAGCAAACAACGGAAGAGACGGGCAGAGTTGAAGCAACAAAGAGAGGAGGAGGCAACATGGCAAGAGCAGGAAGCCCCTCGGAGAGACACTCCCACCGAAAGTTCTTGCGCAGTGGCCGCCATTGGCACCCTGGAAGGCAGCCCCC|CAGATGAGCCCACCTCCCCCAAGAGGCCGAAGAGCATCTCTGAGCCACAGCACAGTGATGCGGAAGGGGACGCTGCCTCTCCCCTGCCCTCCGAGTGGACCTCAGTGAGGATCAGCCCTGGGGAGGAAGCAGCTGGACAGGATGT	2	1	0.935695919090345	0.128734512121114	Y	Y	3.28867865251378	3.28296535696188	3.28296535696188	splitr	293	0	0.0827586206896552	0	Y	0.0827586206896552	N	N	1472	132	ENSG00000133816	ENSG00000133808	+	-	11	11	12285334	12380691	coding	upstream	MICAL2	MICALCL	12115543	12297627	+	+	0	12281441	12297530	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	2	0.438725237727329	0.827783467410055	0.827783467410055	0.438725237727329	2	-	-	0.60524179975777
120057	AATCTTTGATGTACTTCTTGTAGGCTTCTTTTGTGAAACTTGTTTCCTGCAGGTGATGGTTCATGACAATATCGACACCAGTGATTACTGTGCTTTCGGTACCTTCGCCCTCGGGGCCTTCAGCGGAGGCATTTCCACCAATGAGCGAGTCATCAATG|TTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATTACCACCCAACAATGACTAATC	1	0.242006270503862	0.375556752806067	0.399915574091196	N	N	3.58527523866953	2.93702487798787	2.93702487798787	splitr	5	0	0	0	N	0.00632911392405067	N	N	20843	3	ENSG00000133112	ENSG00000230021	-	-	13	1	45915505	659930	coding	intron	TPT1	RP5-857K21.4	45911008	536816	-	-	0	45914296	569010	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	9	0	7.5	6	2	1	N	N	0	0	2	0.438725237727329	0.827783467410055	0.827783467410055	0.438725237727329	2	-	0	0.60524179975777
46207	AAAAAGTAAAGAATTATCCCAGGTTCTTGGGCATCTCAACGATTTTTTCCAAACAAATGCCTCAAAGAGAGAGAAACAGCGAGAGCGAGCAAGCGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA|AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGGAGAGAGAGGGAGGGAGCGAGAGGGAGAGCAAAAGAAGGAAAGGATCCAAGAAAAAAAAGCCCCA	1	1	0.254583648908217	0.223418152789081	N	N	1.14639592371209	0.99952568929365	0.99952568929365	splitr	79	0.520325203252032	0.113821138211382	0	N	0.154471544715447	N	N	20564	226	ENSG00000167258	ENSG00000085276	-	-	17	3	37690800	169381406	utr3p	intron	CDK12	MECOM	37617739	168801287	+	-	0.0569105691056909	37688355	169381317	-	+	Y	-	-	N	SKBR3_13_2_1	10	0.622047244094488	5.5	1	1	1	N	N	0.261538461538462	0.622047244094488	2	0.538059253816536	0.827783467410055	0.827783467410055	0.538059253816536	1	-	-	0.60524179975777
138173	GCGCTTTTTCTTCAGCTTCCTCATCATCAAAATCATCATCATCATCATCTTCATCATCATCCTCTTCATCATCATCG|CTCTTCATCTTCCTCCTCCTCCTCCTCCTCCTCTTCTTCCTCCTCCTCTTCCTCTTCTTCTTCTTCCTCCTCATCTTCCTCCTCCTCGTCGTCTTCCTCCCCTTCCCCTGCTAAGCCTGGCCCTCAGGCCTTGCCCAAACCTGCAAGCCC	1	0.874287491456395	0.800133926999915	0.844771979185218	N	N	2.2954224804045	2.12834410746512	2.12834410746512	splitr	16	0	0	0	N	0.220779220779221	N	N	14119	5610	ENSG00000181163	ENSG00000167978	-	-	5	16	170838141	2821411	coding	coding	NPM1	SRRM2	170814120	2802330	+	+	0	170819953	2819109	-	-	Y	-	1.15002152145851	N	SKBR3_13_2_1	4	0.617391304347826	3.5	3	2	1	N	N	0.375	0.617391304347826	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	47.5	0.60524179975777
140148	ATACCGTCAAACCCTCATCATCTGTGGGTTGCTTTTTTTTTTTTTTTTT|CCTTTTAAAGTCATCTCTATAGGAAGGTGCTGGGCAGGGATCCCAGAGAAAGAAAGGGTCCAAGACTCCATTAACTGCCCTGGATGAAGGGCACTGCTACAGCAGCTAGTACCAGAGACTCTCCTATCTCACGGTTGAGGCAG	3	0.539829588595621	0.833460801719988	0.948949167355464	N	N	2.67904299557779	3.47382827322697	2.67904299557779	splitr	27	0.510204081632653	0.510204081632653	0	N	0.530612244897959	N	N	0	4477	ENSG00000082293	ENSG00000131236	+	+	6	1	70919679	40538321	utr3p	utr3p	COL19A1	CAP1	70576463	40505905	+	+	0.510204081632653	70917085	40537924	+	+	Y	-	-	N	SKBR3_13_2_1	104	0.425925925925926	59	14	2	1	N	N	0.425925925925926	0	2	0.44700307240143	0.670504608602144	0.670504608602144	0.44700307240143	2	-	-	0.60524179975777
107934	CAACTGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAG|ATCTGCACCTGCGGCGGCTCTGCCCGGGCCCAGCCCTGGGCTTCAAGACTCACCGCAGCGGCCCTCCTACTAGACG	2958	0.000413093615045158	0.988236138682252	0.864004922733617	N	Y	3.50000108636471	2.96635033359777	2.96635033359777	splitr	73	0	0	0.0845070422535211	N	0.833333333333333	N	N	0	0	ENSG00000251948	ENSG00000252194	+	-	19	1	24184165	108113552	intron	intron	AC092279.1	AC114491.2	24184075	108113461	-	-	0.848484848484848	24184140	108113527	+	-	Y	1	1	N	SKBR3_13_2_1	4	1	1.92957746478873	1	61	1	N	N	1	1	71	0.678782443276245	0.927117483499261	0.927117483499261	0.678782443276245	4	0	0	0.60524179975777
53920	GAGAAGATGTCACCTTTGCTAACTCTCCTGCCCCCATCCTGCCCCTCTGCTGGGAGGGTGTCTGCTTCTCCCCGCCAGCCCTCGATCCCCTAAACCTCCTTCTTTCAGAAGGCTGGGGAAGCGAGGCCTGGGGAGGGAAGGGACTCACCTGCCCGGCAGATGGGGTCCTCACCTGCCCGCTGCTGCCAGCTAC|ACCCCCCTTGCCCATGCCTCCAGCTACAAAACAATTCAATTGCTTTTTTTTTTTGGTCCAAAATAAAACCTCAGCTAGCTC	2	1	0.51863115005231	0.741210747674579	N	N	3.45976132345673	3.20128492750669	3.20128492750669	splitr	18	0.148148148148148	0.160493827160494	0	N	0.197530864197531	N	N	83603	64916	ENSG00000130600	ENSG00000170421	-	+	11	12	2022700	53298868	intron	utr3p	H19	KRT8	2016406	53290971	-	-	0.148148148148148	2018674	53291061	+	+	Y	-	0.614010163787943	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.571170592512938	0.827783467410055	0.827783467410055	0.571170592512938	1	-	2657	0.60524179975777
82094	ATTTGTCTATAGACACAAGTATCAATGTCTAAAAAAAATCATGACTTTAAACTTCCACCGATGAGGCAGGTAGGAGATAAAGATGAATTCTGAACTGTTACTAAAAGTACTCATTTTTTACCTTGTAGGGAGGGTGGGCAATGGGGTTACCTGACCTTATTTGAGGGTATGGGCTTTCTTTTTTATTTCATCACTTGTTATCTCAAAGAGACTCGGAGCCAGTGATCCTTTTATCCTGCTACAGTCTTTAGGGAGCT|AAAAAAAAAAAAAAGCAGGGGTTGCAATCCTAGTCTCTGATAAAA	2	0.73497367787732	0.232990949158678	0.326303527982929	N	Y	3.51001030496889	3.09918483325901	3.09918483325901	splitr	29	0.466666666666667	0.466666666666667	0.5	N	0.466666666666667	N	N	4421	0	ENSG00000069275	ENSG00000220804	+	+	1	2	205719404	243102304	utr3p	upstream	NUCKS1	AC093642.5	205681947	243030784	-	+	0.466666666666667	205686640	3861336	-	+	Y	-	-	N	SKBR3_13_2_1	49	1	26	3	2	1	N	N	0	1	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	2	-	-	0.60524179975777
83766	GCTCTGCCCATGTCCCCTACGTCGGTGCGCGGCGCGTCTAGCAGGATGCTGGGTGCTTGGAGAACCGCTGGCTCCGGGCGGGCGCAGGCA|AGGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAA	3	0.59108706487798	0.226651492638844	0.404166281443956	N	N	3.32316526707651	3.36191729946799	3.32316526707651	splitr	10	0	0	0.5	N	0.155555555555556	N	N	0	0	ENSG00000176728	ENSG00000162669	+	+	Y	1	21239302	91870426	intron	intron	NCRNA00185	HFM1	21034387	91726323	-	-	0	21154674	91853133	+	+	Y	1	1	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0	1	2	0.587726261861139	0.703615947298547	0.703615947298547	0.587726261861139	2	0	0	0.60524179975777
84823	TTAGTTGTGGCAATAAAAATGATTAAGGATACTAGTATAAGAGATCAGGTTCGCCCTTTAGTGTTGTGTATGGCTATCATTTGTTTTGAGGTTAGTTGGATTAGTCATTGTTGGGTGGTAATTAGTCGGTTGTTGATGAGGTATTTGGAGGTGGGGATCAATAGAGGGGGAAATAGAATGATCAGTACTGCGGCGGGCAGACCTAGGATTGTGGGGGCAATGAATGAAGCG|AACAAACCTCAAAACAAAGGATTTTTAAAATAGAGCTGGGACACAGG	9	0.830016054389531	0.168971100679517	0.479956270829138	N	N	3.49744043328497	3.15940318058201	3.15940318058201	splitr	4	0.0851063829787233	0	0	N	0.0425531914893617	N	N	42	0	ENSG00000185304	ENSG00000253128	-	+	2	14	88285309	107281252	intron	downstream	RGPD2	IGHV4-80	88055474	107281000	-	-	0.0851063829787233	88124639	99831320	-	+	Y	1.62714648350007	-	N	SKBR3_13_2_1	6	0.196078431372549	4.5	3	2	1	N	N	0	0.196078431372549	2	0.529781419142435	0.422169568379128	0.529781419142435	0.422169568379128	2	0	-	0.60524179975777
112384	CTGGGTGGCAGTGATGGCATGGACTGTGGTCATGAGTCCTTCCACGATACCAAAGTTGTCATGGATGACCTTGGCCAGGGGTGCTAAGCAGTTGGTGGTGC|GATTTGTCTGGTTAATTCCAATAACCAACGAGACTCTGGCATGCTAACTAGTTACGTGACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCCTTCAGCCACCC	3	0.524462374483855	0.808929210062517	0.955249021598247	N	N	3.45972147066338	3.83489927696465	3.45972147066338	splitr	12	0	0	0.25	N	0.158415841584158	N	N	20857	1	ENSG00000256901	ENSG00000256642	+	-	12	16	6647316	33962503	coding	upstream	AC006064.3	NCRNA00273	6645876	33961052	-	-	0.0990099009900989	6646486	33963856	-	-	Y	-	-	N	SKBR3_13_2_1	23	1	10.75	5	4	1	N	N	0	1	4	1.20028602774458	0.678782443276245	1.20028602774458	0.678782443276245	1	-	-	0.60524179975777
127426	TGACTACCACAACTCAACGGCTACATAGAAAAATCCACCCCTTACGAGTGCGGCTTCGACCCTATATCCCCCGCCCGCGTCCCTTTCTCCATAAAATTCTTCTTAGTAGCTATTACCTTCTTATTATTTGATCTAGAAATTGCCCTCCTTTTACCCCTACCATGAGCCCTACAAACAACTAACCTGCCACTAATAGTTATGTCATCCCTCTTATTAATCATCATCCTAG|TCCTCATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAA	2	0.477688787812265	0.686645868634774	0.871265487878886	N	N	3.19652499613799	3.08615095325867	3.08615095325867	splitr	11	0	0	0	N	0.0294117647058826	Y	N	12756	58402	ENSG00000198840	ENSG00000198712	+	-	MT	MT	10404	8269	coding	coding	MT-ND3	MT-CO2	10059	7586	+	+	0	10353	7806	+	-	N	-	-	N	SKBR3_13_2_1	2	0	2	2	2	1	Y	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
139225	TTCTTCGTTGTAGATCAGAATTTCACCAGGGAGTAAAATTACCTGAAAACGTAAGAAGTTTTAAACAGCTTTTCACACAAATTAGATGCAACTGTTCCCATGTCTGAGTACTTATTTAAAAGAAAGGTAAAGATTGGCCTGTTAGAAAAAGCATAATGTGAGCTTTGGATTACTGGA|TTTTTTTTTTTTTTTAAACACACAGTTGGGCTAAAATATCCATGAAAA	2	1	0.51863115005231	0.741210747674579	N	N	3.49065421516983	2.77582344457311	2.77582344457311	splitr	28	0	0.458333333333333	0.5	N	0.479166666666666	N	N	1557	0	ENSG00000119707	ENSG00000240269	+	-	14	22	73588122	23247204	utr3p	intron	RBM25	D87024.2	73525144	23154489	+	-	0.458333333333333	73587904	23174979	+	-	Y	-	1	N	SKBR3_13_2_1	4	0.46	3.5	3	2	1	N	N	0	0.46	2	0.720171616646748	0.413891733705027	0.720171616646748	0.413891733705027	2	-	0	0.60524179975777
130014	CCTGACCAACATGGCGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCATGCCTGTAATCGCAGCTACTTGGCTAGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGTGGAG|GTTGCAGTGAGCCATGATCACACCACTGCACTCCAGCCTGGACAACAGAGTGAGACCCCCATCTCAAAAAAAAAAAAAAGAAAAAAAGAAA	1	0.636725521399774	0.311204357582937	0.306030290211129	N	Y	3.44296588673741	3.4194817077554	3.4194817077554	splitr	224	0.89010989010989	0.769230769230769	0.5	N	0.78021978021978	N	N	129	0	ENSG00000137135	ENSG00000220804	+	+	9	2	35675863	243102304	utr5p	upstream	C9orf100	AC093642.5	35658872	243030784	-	+	0.802197802197802	35675070	164035722	-	+	Y	-	-	N	SKBR3_13_2_1	836	1	809	782	2	1	N	N	1	1	2	0.827783467410055	0.678782443276245	0.827783467410055	0.678782443276245	3	-	-	0.60524179975777
127578	GAAACAGGTTTGCTTTCAGCTGTCACTTGCACACATACTGCCTAGTTGTGAACCAAATGTGAAAAAACCTCCTTCATCCCATTGTGTATCTGATACCTGCCGAGGGCCAAGGGTGTGTGTTGACAACGCCGCTCCCAGCCGGCCCTGGTTGCGTCCACGTCCTGAACAAGAGCCGCTTCCGGATGGCTCTTCCCAAGGGAGGAGGAGCTCAAGTGTCGGGAACTGTCTAACTTCAGGTTGTGTGAGTGCGTT|AAAAAAAAAAAAAAAAAAAGAATGGCAAGCTACTAGCTACTTAGGTG	2	1	0.808744637905766	0.927294411452363	N	Y	3.46335504630636	2.55099407056932	2.55099407056932	splitr	23	0.468085106382978	0.468085106382978	0	N	0.638297872340426	N	N	2756	0	ENSG00000130508	ENSG00000230304	+	+	2	3	1748624	197953181	utr3p	downstream	PXDN	CICP6	1635659	197950368	-	-	0.468085106382978	1636957	152545700	-	+	Y	-	-	N	SKBR3_13_2_1	152	0.442307692307692	85.3333333333333	6	6	1	N	N	0	0.442307692307692	6	1.63901126547191	0.430447403053228	1.63901126547191	0.430447403053228	1	-	-	0.60524179975777
138968	TGGTGGTTTACCTACTCAATGGATAGCAGCACGAGGACTGCTGTACTGCAAAAAAAGAAGACCAAAAGATTACAGTGGACCATGGGATACAGAAGCCAGCATGGCAGACAGAAGAAAAATAGTTTGGGAACATGTAACTATTCTAAGTGGAAGTTTTGTTGTAGGAATTATAGTAATCACACCACATTACTTGGCCTTTCGGTAATGTG|AAAAAAAAAAAAAAAAACCCTCAGAGATAGTCTTTGTGAAGAGCTTCTGAC	2	1	0.935695919090345	0.927294411452363	N	N	3.70719543103269	2.74968113665891	2.74968113665891	splitr	30	0.431372549019608	0.431372549019608	0	N	0.470588235294118	N	N	935	6465	ENSG00000114120	ENSG00000111371	+	-	3	12	140698775	46663208	utr3p	utr3p	SLC25A36	SLC38A1	140660672	46576843	+	-	0.431372549019608	140695478	46581582	+	+	Y	-	-	N	SKBR3_13_2_1	33	0	20.5	8	2	1	N	N	0	0	2	0.687060277950346	0.413891733705027	0.687060277950346	0.413891733705027	1	-	-	0.60524179975777
92255	TTTCAGCTCACCGCAGCCTCCACCTCCCAGGTTCAAGCAGTTCTCCTGCCTCAACCTCCCGAGTAACTGGGATTACAGGTGTGTGCCACCACACCCGACTAATTTTTTTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAG|GGTGGTCCACCCGCCTCGGCCTCCCAAAGTGCTGGCATTACAGGCGTGAACCACCGTGCCTGGCCGGAAGTCTTTAAAAAATAAAGTGATTCTACTCTTCTAAGCTTACAGAGACCAGACCAGGTGAATGTAACTGGGGAAAATCAAGATGGTACCTCTCTGCATTA	1	1	0.612610548302747	0.693969709788871	N	N	3.65760879692984	3.51001030496889	3.51001030496889	splitr	227	0.359281437125749	0.622754491017964	0.5	N	0.616766467065868	N	N	2603	1199	ENSG00000149639	ENSG00000156030	+	-	20	14	35492089	74256988	utr3p	utr3p	KIAA0889	C14orf43	35405845	74181825	-	-	0.263473053892216	35409721	74183160	-	+	Y	-	-	N	SKBR3_13_2_1	51	1	30	9	2	1	N	N	1	0.479591836734694	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
140592	CAAATGTGAGGCATGTGCTGATAAGTTGAAAAGAGAAATAGAGCTGTATGGTTGCCCCCCTGATTTTCCAGATGAAGAAGAGGAAGAGGAAGAA|GAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACTAAAAAAAAAAAGGC	5	1	0.391316156835248	0.76966335168802	N	N	2.93548794710821	2.18533368467738	2.18533368467738	splitr	19	0.202127659574468	0.0638297872340424	0	N	0.180851063829787	N	N	2657	14698	ENSG00000133706	ENSG00000187514	+	-	5	2	145562223	232578251	coding	coding	LARS	PTMA	145492601	232571605	-	+	0.0531914893617019	145547745	232576648	-	-	Y	-	-	N	SKBR3_13_2_1	3	0.0511363636363636	3	3	2	1	Y	N	0	0.0511363636363636	2	0.430447403053228	0.827783467410055	0.827783467410055	0.430447403053228	2	-	-	0.60524179975777
137757	CTTGAAGGTCCGGAGGCCTCGAGGGGTTTCCACGTAGCCCACAATGCCCACAACCACCATGGGTGGTGTCTCTACAATGGTCACA|ACCTCAACACCACCTTCTTCGACCCAGCCGGAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCG	1	0.100608387246777	0.800133926999915	0.844771979185218	N	N	3.28292550416853	3.37824872787089	3.28292550416853	splitr	22	0.213333333333333	0.213333333333333	0	N	0.226666666666667	N	N	22077	0	ENSG00000100316	ENSG00000237973	-	-	22	1	39716394	567996	coding	intron	RPL3	RP5-857K21.6	39708887	566454	-	+	0.213333333333333	39713606	567094	+	-	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.463558741749631	0.827783467410055	0.827783467410055	0.463558741749631	1	-	0	0.60524179975777
108378	AGCCTAATTTATCTTGTTTCTAGTTATATGTCTTTTTTTTTTTTTTTTT|CTTCAGAGACAGGATCCCGCTCTGTCTCCCAGGCCGGAGTGCAGTGGCACGATCATAGCTCACTGTAACCTCAAACTCCTGGACTCAAGCGATCTTCCTGCCTTAGCCTTAGCCTCCTGAGTAGCTAGGACTGTAGGCATGTACCACCGCGCCTGGCCTGTGTCTATTTTATCATTCAGATTAATTTAATTTTGTATTTTCTGGCTCAGATGAACTTAAAGAAGCATCAAACAT	1	0.714973209004746	0.800133926999915	0.844771979185218	N	Y	2.34586586544111	3.48912663185998	2.34586586544111	splitr	24	0.448979591836735	0.448979591836735	0	N	0.448979591836735	N	N	1064	0	ENSG00000150961	ENSG00000203321	-	+	4	9	119759838	77611209	utr3p	intron	SEC24D	RP11-197P3.4	119643978	77567884	-	+	0.448979591836735	119657193	77598167	+	+	Y	-	1	N	SKBR3_13_2_1	24	0.846153846153846	11	4	3	1	N	N	0.846153846153846	0.125	3	0.430447403053228	0.596004096535239	0.596004096535239	0.430447403053228	2	-	0	0.60524179975777
31964	GTGGACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCAGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGGTTTTGATCTG|CTCTTTCTCCTGGGTTTAAGCAATTCTTGTGCCTCAGCCTCCCAAGTACCTAGGATTACAGACGTGCACCACCACACCTGGCTAATTTTTGTATTTTTCCGTACGCCACATTTCCCGCGCCCCACCGCGGGGCGGGGATTCGGCGCTGGGCTCTTCCCTGTTCACTCGCCATTACTGAGGGAATCCTGGTTAGTTTCTTTTCCTCCGCTGACAAATATGCTTAAATT	1	2.38459574245208e-13	0.20555784636729	0.155228020814782	N	N	3.25828027434064	3.3012485241977	3.25828027434064	splitr	98	0	0	0	N	0	N	N	0	0	ENSG00000212932	ENSG00000141161	-	-	21	17	48111157	33516364	upstream	intron	RPL23AP4	UNC45B	48110676	33474836	+	+	0	9827227	33478017	-	-	Y	-	1	N	SKBR3_13_2_1	2	1	2	2	2	2	N	N	1	0.969924812030075	2	0.670504608602144	0.827783467410055	0.827783467410055	0.670504608602144	4	-	0	0.60524179975777
28832	GTTACCGCCCGCAGCGCCCTTTAACTCCCGCCCCCGCCCCGCTCACCGCCCCCTTCCCCTGCTACAGCGCGCTCGCCCCGCGGCCGCCAATCAGCCGCGCGCCCCGGCCGCGCGCCCCGCCCCGCCCCCGGTGGGTGTGCGCGCGGCCAATGGGCGGTGCGCGGGGGCCGGGCCGCGGCGGGGCGGGGCAGCGGGGCGGCCGCCAATCGCCGTGGTGTTGTTGAAACTGAAAATACTACATTATGCTAATCGCGGCCGGGCCCGCGCGCACGGGGGTGGGGCCCGCGCG|CAGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCAGT	2	0.000584183788850709	0.196734923242299	0.258789252325421	N	N	2.36935909625921	3.48846428445067	2.36935909625921	splitr	0	0	0	0	N	0	N	N	4	0	ENSG00000129757	ENSG00000251948	-	+	11	19	2907111	24184165	utr5p	intron	CDKN1C	AC092279.1	2904443	24184075	-	-	0	2907036	24184151	-	+	Y	1.15923566878981	1	N	SKBR3_13_2_1	2	1	1.66666666666667	1	2	1	N	N	1	1	3	0.422169568379128	0.629115435231642	0.629115435231642	0.422169568379128	1	0	0	0.60524179975777
128487	CCCCTGAATGTTTCTATCATTTTCTTTTCTTTTTTTTTTTTTTTCGA|AGACAGGGTCTTGCTATATTGCCCAGAATGGCCTCAAACTCCTGGGCTCAAGCGATCCTCCTCCAGCCTCCCGAGTAGCTATAGTTTGGTTTTAATCAGTAAATATTTATTTAGCACTTGGACTGCTCTAGGCACTATAGGGTACAAAATTAGTTGTATTTTATCCTCTCATCCCAGCTGTGAGGTAGGTTTGCTAAAGCTGTAATACCACTAAGCAGTTTTTTCAAT	1	0.955769338327132	0.800133926999915	0.844771979185218	N	Y	2.28558202204071	3.65384724021086	2.28558202204071	splitr	0	0	0.425531914893617	1	N	0.468085106382979	N	N	272	798	ENSG00000205730	ENSG00000118873	+	-	16	1	19132946	220445796	intron	utr3p	ITPRIPL2	RAB3GAP2	19125254	220321635	+	-	0.425531914893617	19131777	220323467	+	-	Y	-	0.768174411856614	N	SKBR3_13_2_1	14	1	12.5	11	2	1	N	N	1	0.631067961165049	2	0.422169568379128	0.827783467410055	0.827783467410055	0.422169568379128	2	-	9	0.60524179975777
141100	CGGGTCTGCCCATTCTTGGAGATACCAGCTTCAAATTCACCAACACCAGCAGCAACAATCAGGACAGCACAGTCAGCCTGAGATGTCCCTGTAATCATGTTTTTGATAAAGTCTCTGTGTCCTGGGGCATCAATGATAGTCACATAGTACTTGCTGGTCTCAAATTTCCACAAGGAGATATCAATGGTGATACCACGTTCACGCTCAGCTTTCAGTTTATCCAAGACCCAGGCATACTTGAAGGAGCCCTTTCCCATCTCAGCAGCCTCCTTCTCAAATTTTTCAATGGT|TCTTTTCTCTTCCCTGACCAGTGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGAAATAAAACCTCCCACTTTGTCTGTACATACTGGC	1	8.30279108905066e-05	0.321839855309698	0.321669634186996	N	N	3.13379942889774	3.40744620240479	3.13379942889774	splitr	6	0.0344827586206898	0.0344827586206898	0	N	0.0517241379310345	N	N	108743	129759	ENSG00000156508	ENSG00000108298	-	-	6	17	74233520	37360980	coding	intron	EEF1A1	RPL19	74225473	37356536	-	+	0.0344827586206898	74229638	37360757	+	-	Y	-	0.90483202280879	N	SKBR3_13_2_1	48	0	34	20	2	1	N	N	0	0	2	0.827783467410055	0.471836576423731	0.827783467410055	0.471836576423731	1	-	21567.5	0.60524179975777
133778	GCGCAGGAGGGGTAGGCTGGGAGGGGCTGCCACAGCTGTTCACTTGGGCAGGACGTCAGAGGACTCGGACACCAGCTTCCCATCACGT|TGTCTCTCCTTCTTCCCCCTGGCCTGTTCTGTCTCTGAGCTCTGTGTCCTCCGTTCATTCCATGGCTGGGAGTCACTGATGCTGCCTCTGCCTTCTGATGCTGGACTGGCCTTGCTTCTACAAGTATGCTTCTCCCACAGCTGTGG	1	1	0.447538936456759	0.5	N	N	3.44143830342756	2.86951645143996	2.86951645143996	splitr	15	0	0	0	N	0.102272727272727	N	N	138	10309	ENSG00000168944	ENSG00000158710	+	+	5	1	122759286	159895522	intron	utr3p	CEP120	TAGLN2	122680579	159887897	-	-	0	122736661	159888296	+	+	Y	1.21176927801009	1.83135107939795	N	SKBR3_13_2_1	18	0	12	6	2	1	N	N	0	0	2	0.620837600557541	0.827783467410055	0.827783467410055	0.620837600557541	2	3	742	0.60524179975777
48400	CTCCCGACCTCAAGAGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGTGAGCCACCATACCCAGCCTAAACTGGTTTTTGTTTTTTTTTTCTGAGACAGAGTCTCGCTCTGTT|GCCAGGCTGGTCTTGAACTCCTGACCTCAG	1	0.0179080100794109	1	0.935920242646516	N	Y	2.87573360810164	3.55197054750939	2.87573360810164	splitr	143	0.766666666666667	0.333333333333333	1	N	0.9	N	N	1697	164	ENSG00000116005	ENSG00000185917	-	-	2	21	70508323	37451687	utr3p	utr5p	PCYOX1	SETD4	70484518	37406839	+	-	0.266666666666667	70506894	37431797	-	+	Y	-	-	N	SKBR3_13_2_1	174	1	119	64	2	1	N	N	0.548780487804878	1	2	0.827783467410055	0.736727285994949	0.827783467410055	0.736727285994949	2	-	-	0.60524179975777
71990	CTGCAGCCTCCTTGCTGCGCAATGTCCCGGGGCCCCCCTCCCGTGGCCGCTTCGCCCTCCTGGTGACGTCCTGCTGCAACTCCCCGAGCACTGCCTGTCTTCCCGCTCTCCAGCCCTCGAGGCTCCGGCATAGGCCTGAGAAAGCCGTGCCGGAGCTGCCCCTGTGCCTGCTACTAAATGAATTGC|GGTGTGGTGGCCGTCCTGCTGACCAAGAAGTCCCTGGCCCGGCGGGTGTACGCCACCATCCTGAACGCCGGCACCAATACAGATGGCTTCAAGGAGCAAGGCGTGACCTTCCCCTCAGGGGATATCCAGGAGCAGCTCATCCGCTCGTTGTACCAGTCGGCCGGAGTGGCCCCTGAGTCATTTGAATACATCGAAGCCCACGGCACAGGCACCAAGGTGGGCGACCCCCAGGAGCTGAATGGCATCACCCGAGCCCTGTGC	1	4.57626127976305e-05	0.447538936456759	0.5	N	N	3.35356364524965	3.36720643949681	3.35356364524965	splitr	9	1.11022302462516e-16	1.11022302462516e-16	0	N	1.11022302462516e-16	N	N	83603	94538	ENSG00000130600	ENSG00000169710	-	-	11	17	2022700	80056106	intron	coding	H19	FASN	2016406	80036215	-	-	1.11022302462516e-16	2018287	80050872	+	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	-	0.60524179975777
140740	CTCGAGCCGCTGGACGAGGATCTCTTCAGAGGAAGGCATTACTGGGTACCGGCCAAGAGGCTGTTTGGTGGTCAGATCGTGGGCCAGGCCCTGGTGGCTGCAGCCAAGTCTGTGAGTGAAGACGTCCACGTGCACTCCCTGCACTGCTACTTTGTTCGGGC|AGGCACCATGACTCCTGTGAGGATGCAGCACTCCCTGGCAGGTCAGACCTATGCCGTGCCCCTCATCCAGCCAGACCTGCGGTGAGAGGAGGCCGTCCAGCAGATGGCAGATGC	1	1	1	0.935920242646516	N	N	3.28296535696188	3.43209143223268	3.28296535696188	splitr	5	0.0263157894736841	0.0263157894736841	0	N	0.0263157894736841	N	N	592	0	ENSG00000101473	ENSG00000146556	+	-	20	2	44486045	114356655	coding	intron	ACOT8	WASH2P	44470360	114341664	-	+	0.0263157894736841	44483800	114346125	-	-	Y	-	1	N	SKBR3_13_2_1	6	0	6	6	5	1	N	N	0	0	5	1.24995303578918	0.728449451320848	1.24995303578918	0.728449451320848	3	-	0	0.60524179975777
131274	CAATGCTGGTGGTTCTCTCTGTGGCTTCTTCGTAGGGTTCCTCAGCCTCTTCCTCTACCTCATCA|AACTAACCTCAAAACAAATGATAGCCATACACAACACTAAGGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCTATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATT	1	6.3217570051569e-05	0.375556752806067	0.399915574091196	N	N	3.22845095762097	3.10865033796007	3.10865033796007	splitr	4	2.22044604925031e-16	2.22044604925031e-16	0	N	0.046153846153846	N	N	8411	3	ENSG00000142192	ENSG00000230021	-	-	21	1	27543446	659930	coding	intron	APP	RP5-857K21.4	27252861	536816	-	-	2.22044604925031e-16	27394268	569227	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0.63265306122449	2	2	2	2	N	N	0.63265306122449	0	2	0.811227798061854	0.827783467410055	0.827783467410055	0.811227798061854	2	-	0	0.60524179975777
141163	TGGTAGGGCCGACTCTCTGAAGGGCCAGAATTCATCCAGGGTGGGCGGCTCTGGGTGGTAGACATGAGAGACGGTGGAGGTGGGTTGTTGGCGGGAGCAGCAGGACGAGGTGCGCTGGCCAGGGGTGTGGTGGCAGGCCCAGAGGTGGAGCC|GCCACAGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGC	283	1	0.0252170571820231	0.0898400266422404	N	N	3.00567142744271	3.61360747730288	3.00567142744271	splitr	24	0.0574712643678161	0.0574712643678161	0	N	0.0574712643678161	N	N	2194	0	ENSG00000168066	ENSG00000252318	-	+	11	2	64546316	133038738	coding	intron	SF1	AC097532.1	64532078	133038647	-	-	0.0574712643678161	64535658	133038727	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.827783467410055	0.471836576423731	0.827783467410055	0.471836576423731	2	-	0	0.60524179975777
136278	GGCACCTGTAGTCCCAGCTACTCCTGGGACTACTCGGGAGGCTGAAGCAGGAGAATGGCATGAACCCAGGAGACAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCAAGCCTGGGCGACAGAGCGAGACTCCTCTCAAAAAAAAAAAAAAAATTAGCTGG|GTGTGGTGGTGCATGCCTGTAGTTCCAGCTACTCAGGACACTGACGTAGGAGGGTTGCTTGAGACTGAGAGTTGGAGGCTGCGATGAGCCATGAATGCCCCACTGCACTCCAGCCTGG	2	1	0.12528675945291	0.128734512121114	N	Y	3.09918483325901	3.5920919620082	3.09918483325901	splitr	283	0.76271186440678	0.322033898305085	0	N	0.271186440677966	N	N	3257	4550	ENSG00000182180	ENSG00000133313	-	-	10	18	75012451	72190687	utr3p	utr3p	MRPS16	CNDP2	75006510	72163443	-	+	0	75010000	72187919	+	-	Y	-	5.23098175859198	N	SKBR3_13_2_1	47	1	24	1	1	1	N	N	0.740566037735849	1	2	0.827783467410055	0.463558741749631	0.827783467410055	0.463558741749631	3	-	172	0.60524179975777
137569	TGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAAGAAACAGACCAGTGGTATGGAGTATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAGAAGAGAAGGAAGAGGAAAAGGACAAGGGAGATGAGGAGGAGGAAG|AAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGGTGATGGTGAGGAAGAGGACGGAGATGAAGATGAGGGAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCCAG	4	0.593953103748137	0.114079620368998	0.203838792220813	N	N	2.40923232670323	2.19315783450189	2.19315783450189	splitr	17	0.142857142857143	0.0357142857142857	0	N	0.114285714285714	N	N	16908	0	ENSG00000127022	ENSG00000198134	+	-	5	12	179157926	12264423	coding	intron	CANX	RP11-267J23.4	179105629	12264097	+	+	0.0357142857142857	179151769	12264260	+	-	Y	-	1	N	SKBR3_13_2_1	5	0.236842105263158	5	5	2	1	N	N	0	0.236842105263158	2	0.504947915120133	0.629115435231642	0.629115435231642	0.504947915120133	3	-	0	0.60524179975777
95586	CCTCCAAATATCTCATCAACAACCGACTAATCACCACCCAACAATGACTAA|TCAAACTCTACTCCCACTAATAGCTTTTTGATGACTTCTAGCAAGCCTCGCTAACCTCGCCTTACCCCCCACTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAGTCACAGCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAAACCCTCATTCACACGAGAAAACACCCTCATGTTCATACACCTATCCCCCATTCTCCTCCTAT	1	0.0587948116617089	0.311204357582937	0.306030290211129	N	Y	3.15417924089688	3.24571040265672	3.15417924089688	splitr	350	1	1.11022302462516e-16	0	Y	0.0980392156862744	N	N	38194	93473	ENSG00000198899	ENSG00000198886	+	-	MT	MT	9207	12137	coding	coding	MT-ATP6	MT-ND4	8527	10760	+	+	0	8674	11803	+	-	N	-	-	N	SKBR3_13_2_1	6	0	5.33333333333333	4	3	3	N	N	0	0	3	0.91056181415106	1.16717468904818	1.16717468904818	0.91056181415106	1	-	-	0.60524179975777
71562	TTTCCCACCTTCTTCCTCCTCTTCATCCTCATCCTCATCTTCATCTTCTTCATCAAGTCCAAATTCTTCTTCCTCCTC|CTGCCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAATGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATGACATTCACAGCCATAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCC	1	1	0.209527252024466	0.160545729398276	N	N	2.77232056535123	3.48230056095149	2.77232056535123	splitr	3	0.0384615384615383	0	0	N	0.217948717948718	N	N	2326	31	ENSG00000136938	ENSG00000132570	-	+	9	5	100778225	134343649	coding	intron	ANP32B	PCBD2	100745638	134240596	+	+	0.0384615384615383	100773666	134263510	-	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	3	0.319672131147541	2.5	2	2	1	N	N	0.319672131147541	0	2	0.827783467410055	0.802949963387753	0.827783467410055	0.802949963387753	2	-	1	0.60524179975777
82369	ACGCTGGGAGCCTTCTTGGGTGCTGGAATAGTTTTTGGGCTGTATTATGATGCAATCTGGCACTTCGCCGACAACCAGCTTTTTGTTTCGGGCCCCAATGGCACAGCCGGCATCTTTGCTACCTACCCCTCTGGATGTACATACATAAGTAGGAGCAGTGGGACGTGTTTCTGTCATAATGCAGGCATGAAGGGTGGAGTGAAGTCAGGTCATAAGTTTCATGTTTGCTTTTGTTTTGTTTTGTTTTTAATGTATGTAGCAGATGTTACAGTCTTAGGGATCCGGGATGGGAGACCCCACTTTAGAAAGGGTCGTCACT|ACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGCAC	1	7.7060448139014e-07	0.209527252024466	0.160545729398276	N	N	3.40112399260607	3.37023110089298	3.37023110089298	splitr	8	0	0	0	N	0	N	N	6106	0	ENSG00000165272	ENSG00000212932	+	+	9	21	33447609	48111157	utr3p	upstream	AQP3	RPL23AP4	33441152	48110676	-	+	0	33441232	9827515	-	+	Y	-	-	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0	1	2	0.587726261861139	0.637393269905742	0.637393269905742	0.587726261861139	1	-	-	0.60524179975777
141593	TCTCAGAGGTGATCGGCGATCAGAGGGCGATGAAGTTCTAGATCCATTGAGACAAGCTCTAGACAGTAGCATGCAGTCCCACAACTTGTACCAGCATCCCCAGCGTCTGGCATTCCATGTTTCTGCTCCTGTGGCCTCCACGGTGCAACAAGCTAGCGGTTTACTTGGACCTCTGCCTCATCTTTCTTCTTTTGCGCTTCAGCCTGCGCATTCGCTTCTTCCTCCACTTGGCTCTCATGGC|TCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCGGATTCCACCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGAACGTCACTAATTAGATGACTAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGTCCTTCATTGAATTTCTTCACTTTGACATTCAG	1	5.86683887897313e-06	0.800133926999915	0.844771979185218	N	N	3.26140998887385	3.60273302279816	3.26140998887385	splitr	10	0.0252100840336135	0	0	N	0.0546218487394958	N	N	6323	0	ENSG00000198637	ENSG00000198626	-	+	7	1	137198984	238129359	utr5p	intron	AC090498.1	RYR2	137198564	237205505	+	+	0.0252100840336135	137198602	237766596	-	+	Y	-	1	N	SKBR3_13_2_1	70	1	53	36	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
139438	GCTGCTTGGGAGGCTGAGGCAAAATAATCACCTGAACCCTGGAGTCAGAGGTTGTGGGGAGCCGAGATTGTGCCACTACACTCTAGTTGGGCGACAAGAGTGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAC|AAAAAAAAAAAAAAAAAAAAGAGAATCGTACGTCGACTTTCGATTTTTCACAGCCTCAGCCTAGGAAAAATGGTTCATGGGATAAACAGCTGGTATTTGTATCTAAAACTCAGATTGGTCACATAAATGCCACGGCATTCCGAAGTTTTGATTTTGATTAACATTGACAGGATTACTGTGTGTTTAATTTTTTAAAAACT	1	1	0.205558172728075	0.155228020814782	N	Y	2.0656372782672	2.50546516763251	2.0656372782672	splitr	151	0	0	0	N	0.028169014084507	N	N	546	6167	ENSG00000130338	ENSG00000166913	-	-	6	20	158932860	43537173	utr3p	utr3p	TULP4	YWHAB	158733692	43514317	+	+	0	158929910	43535149	-	-	Y	-	0.824779635712122	N	SKBR3_13_2_1	42	0.839285714285714	17.6666666666667	1	2	1	N	N	0.839285714285714	0.097938144329897	3	0.852616971432356	1.24167520111508	1.24167520111508	0.852616971432356	3	-	119.333333333333	0.60524179975777
141260	GGACTGTGGTCATGAGTCCTTCCACGATACCAAAGTTGTCATGGATGACCTTGGCCAGGGGCGCTAAGTAGTTGGTGGTGCAGGAGGCATTGCTGACGATCTTGAGGTTGTTGTCATACTTCTCATGGTTC|TCTCTTCACCCTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGATTCCGCCAAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGTGCGTCACTAATTAGATGACAAGGCATTTG	1	1	0.205558172728075	0.155228020814782	N	N	3.58441000276898	3.44529314610237	3.44529314610237	splitr	14	0.0152671755725191	0	0	N	0.0534351145038168	N	N	0	356	ENSG00000235587	ENSG00000149262	+	+	X	11	46300149	77705724	intron	intron	GAPDHP65	INTS4	46299144	77589766	-	-	0.0152671755725191	46299744	77597765	+	+	Y	1	1.69881089015784	N	SKBR3_13_2_1	66	1	55.3333333333333	40	3	1	N	N	0	1	3	0.935395318173362	0.844339136758256	0.935395318173362	0.844339136758256	2	0	5	0.60524179975777
60655	TCAAGATGCGGCGCCGCGGGGAGGGGGGGCA|TGGGCGGAAGTGACCGTGGTGGCTTCAATAAATTTGGTGGCCCTCGGGACCAAGGATCACGTCATGACTCCGAACAGGATAATTCAGACAACAACACCATCTTTGTGCAA	1	0.000728341774743594	0.311204357582937	0.306030290211129	N	N	2.88199133356859	3.50000108636471	2.88199133356859	splitr	4	0	0.129032258064516	0	N	0.451612903225807	N	N	42	4330	ENSG00000007402	ENSG00000089280	-	-	3	16	50541675	31203127	utr5p	coding	CACNA2D2	FUS	50400233	31191445	-	+	0	50540893	31196497	+	-	Y	-	-	N	SKBR3_13_2_1	39	0.408450704225352	26.3333333333333	1	2	1	N	N	0.408450704225352	0	3	0.587726261861139	0.90228397947696	0.90228397947696	0.587726261861139	2	-	-	0.60524179975777
73172	GGAAAGCCTTCCTGCTCCTGCTGCTCTTGGGGCTGGTGCAGCTGCTGGCCGTGGCGGGTGCCGAGGGCCCGGACGAGGATTCTTCTAACAGAGAAAATGCCATTGAGGATGAAGAGGAGGAGGAGGAGGAAGATGATGATGA|TGATGAAGAGGAGGAAGGATTAGAAGATATTGACGAAGAAGGGGATGAGGATGAAGGTGAAGAAGATGAAGATGATGATGAAGGGGAGGAAGGAGAGGAGGATGAAGGAGAAGATGACTAAATAGAACACTGATGGATTCCAACCTTCCTTTTTTTAAATTTTCTCCAGTCCCTG	2	0.511211649793655	0.871805782194921	0.902195137443948	N	N	2.48475781335974	2.95656509737052	2.48475781335974	splitr	35	0.225352112676056	0.225352112676056	0	N	0.232394366197183	N	N	2316	7284	ENSG00000155660	ENSG00000119335	+	-	7	9	148725733	131458679	coding	coding	PDIA4	SET	148700154	131445703	-	+	0.225352112676056	148718176	131456225	-	-	Y	-	-	N	SKBR3_13_2_1	5	0.434782608695652	4.5	4	2	1	Y	N	0.087719298245614	0.434782608695652	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
140437	CTGTCTGGCACTCCCTAGTGAGATGAACCCGGTACCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTCATGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTTGGCCATCTTGGCTCCTCCCCCCA|AGAACTACTTAACAATATACATACTGATCCATTGTGGAATTATTAAGGAAAATACATTGAAATAGGTGGCATTCTTGTCAAAGATATATATGGACGGCTAGATGGATAGATAGGTGAAAATCATGTTCCATGGAAGAAGAGTTAGCTCAGC	1	1	0.311204357582937	0.306030290211129	N	Y	3.38809011260573	3.5482584762506	3.38809011260573	splitr	286	0.962962962962963	2.22044604925031e-16	0	N	0.962962962962963	N	N	299	3	ENSG00000047621	ENSG00000232023	+	-	12	2	4647674	229476111	intron	intron	C12orf4	AC009410.1	4596894	229347977	-	-	0.0148148148148148	4618060	229371044	-	+	Y	-	-	N	SKBR3_13_2_1	31	1	24.25	19	4	1	N	N	1	0.285714285714286	4	0.612559765883441	1.05128500361077	1.05128500361077	0.612559765883441	3	-	-	0.60524179975777
68247	CCATCTTCAACTGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCA|CCTCCATCATCACCTCAACCCAAAAAGGCATAATCAAACTTTATTTCCTCTCTTTCTTCTTCCCACTCATCCTAACCCTACTCCTAATCACATAATCTATTCCCCCGAGCAATCTCTAGTACAATATACACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAAAGCCCCCGCACCAATAGGATCCT	3	1	0.672179231214042	0.0910743065647112	N	N	3.58424216889964	2.98996249365577	2.98996249365577	splitr	17	0.075	0	0	N	0.15	N	N	0	31	ENSG00000251948	ENSG00000132570	+	+	19	5	24184165	134343649	intron	intron	AC092279.1	PCBD2	24184075	134240596	-	+	0.075	24184147	134260432	+	+	Y	1	1.2575464834446	N	SKBR3_13_2_1	2	1	2	2	3	1	N	N	1	0	3	0.562892757838837	1.07611850763307	1.07611850763307	0.562892757838837	1	0	0.666666666666667	0.60524179975777
138782	GTCGGTCAGCCCTTCCAGGCGAGACTCCAGCTCTACCTTGTTCATGTAAGCTTCATCCACATCCTTCTTGATGAGGACAAATTCGTTCTCCATCTCTGTACGCTTATTGATCTCATCCTCATACTTGTTCTTGAAGTCCTCCACCAGCCCCTGCA|AGAGCACAAGAGGAAGAGAGAGACCCTCACTGCTGGGGAGTCCCTGCCACACTCAGTCCCCCACCACACTGAATCTCCCCTCCTCACAGTTTCCATGTAGACCC	2	1	0.304034687748377	0.452412299844665	N	N	3.50272957331379	3.02592325836586	3.02592325836586	splitr	15	0	0	0	N	0.0192307692307693	N	N	64916	0	ENSG00000170421	ENSG00000228232	-	+	12	X	53298868	39647390	coding	downstream	KRT8	GAPDHP1	53290971	39646386	-	-	0	53295678	39646360	+	+	Y	-	-	N	SKBR3_13_2_1	78	0	40.75	5	4	1	N	N	0	0	4	1.13406335035178	0.769838624691351	1.13406335035178	0.769838624691351	0	-	-	0.60524179975777
75768	ATATCGTCGGGATTTCTGGTCCAGATGGGCTTTGTTTTGTTGAGCTCTTCTTGATCGATGTACTTTTCCTTAATCTTCTTCTTCTTCTTCTTGTCACCATCCTTCTTTTCTTCTTCCTCATCAG|AACCCTACTCCTAATCACATAATCTATTCCCCCGAGCAATCTCTAGTACAATATACACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAAAGCCCCCGCACCAATAGGATCCTCCCGAATCAGCCCTGACC	1	0.775303715492152	0.612610548302747	0.693969709788871	N	N	2.80050336952116	3.31166831795583	2.80050336952116	splitr	22	0.129032258064516	0	0	N	0.129032258064516	N	N	26619	31	ENSG00000080824	ENSG00000132570	+	+	14	5	102606086	134343649	coding	intron	HSP90AA1	PCBD2	102547073	134240596	-	+	0.129032258064516	102551211	134260359	+	+	Y	1.53264849268147	1.2575464834446	N	SKBR3_13_2_1	4	0.359550561797753	3	2	2	1	N	N	0.359550561797753	0	2	0.736727285994949	0.645671104579843	0.736727285994949	0.645671104579843	1	858.5	1	0.60524179975777
87293	GATACCAGGATCCTGCCAATCACCAACCACGTCCACCCACAGGGACACAAACAAGC|TCACCCATAACACTAATCCTACTTCCATCACCAACCCCACTAAAACACTTACCAAGACCTCAACCCCTGACCCCCATGCCTCAGGATACTCCTCAATAGCCACCGCTGTAGTATATCCAAAAACAACCATCATTCC	1	0.127813156876704	0.375556752806067	0.399915574091196	N	N	2.89885125461967	2.91609200451579	2.89885125461967	splitr	7	1.11022302462516e-16	0	0	N	0.107142857142857	N	N	7494	0	ENSG00000170315	ENSG00000249119	-	+	17	5	16286054	134260334	utr5p	intron	UBB	MTND6P4	16284113	134259813	+	+	1.11022302462516e-16	16284434	134260131	-	+	Y	0.0764775747742149	1	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.571170592512938	0.827783467410055	0.827783467410055	0.571170592512938	1	678.5	0	0.60524179975777
108915	ACCCTACTAAACCCCATTAAACGCCTGGCAGCCGGAAGCCTATTCGCAGGATTTCTCATTACTAACAACATTTCCCCCGCATCCCCCTTCCAAACAACAATCCCCCTCTACCTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTCTAACAGCCCTAGACCTCAACTACCTAACCAACAAACTTAAAATAAAATCCCCACTATGCACATTTTATTTCTCCAACATACTCGGATTCTACCCTAGC|ATCACCCCGCTAAATCCCCTAGAAGTCCCACTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCAC	2	0.0212844920204757	0.808744637905766	0.927294411452363	N	N	3.39165333023182	3.20959872893168	3.20959872893168	splitr	23	0.110236220472441	0.110236220472441	0	N	0.133858267716536	Y	N	54817	33743	ENSG00000198786	ENSG00000198938	+	-	MT	MT	14148	9990	coding	coding	MT-ND5	MT-CO3	12337	9207	+	+	0.110236220472441	13929	9567	+	-	N	-	-	N	SKBR3_13_2_1	3	0	3	3	4	3	Y	N	0	0	4	1.4982880760122	0.778116459365451	1.4982880760122	0.778116459365451	3	-	-	0.60524179975777
134786	ATGGCCCACATGGCCTCCAAGGAGTAAGACCCCTGGACCACCAGCCCCAGTAAGAGCACAAGAGGAAGAGAGAGACCCTCACTGCTGGGGAGTCCCTGCCACACTCAGTCCCCCACCACA|TTAACAACATAAAACCCTCATTCACACGAGAAAACACTCTCATGTTCATACACCTATCC	3	0.376794342963288	0.151268937487973	0.243187587436591	N	N	3.09616017186285	3.13060693363223	3.09616017186285	splitr	24	0	0	0	N	0.203389830508475	N	N	0	31	ENSG00000228232	ENSG00000132570	-	+	X	5	39647390	134343649	downstream	intron	GAPDHP1	PCBD2	39646386	134240596	-	+	0	39646293	134262459	-	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	6	0	5	4	2	1	N	N	0	0	2	0.620837600557541	0.422169568379128	0.620837600557541	0.422169568379128	2	-	1	0.60524179975777
58815	CCTGATGCAAAGGTGGAAGAAGAGCCCGAAGAAGAACCTGAAGAGACAGCAGAAGACACAACAGAAGACACAGAGCAAGACGAAGATGAAGAAATGGATGTGGGAACAGATGAAGAAGAAGAAACAGCAA|AGATGAGCTGAGCTGGACAACTAAAAGCACCTGTAGCAGTTCTCCCCAACACAGCACTGAGCACAAGTCTAGGCAGTCATCATGGTCTCCTCTGCTCGACTCTGCCCAGACCTTCCAGTTCTCCGACCGAAAGACTTGTGATCCAGTTTTGCTACAAAGAACAAAGTGGTTGA	2	1	0.170189729447764	0.209300629116717	Y	Y	2.91034820374036	3.46335504630636	2.91034820374036	splitr	303	1	0	0	Y	0.992307692307692	N	N	9945	100	ENSG00000166598	ENSG00000204954	+	-	12	12	104341679	104350993	coding	intron	HSP90B1	C12orf73	104324160	104343981	+	-	0	104341206	104347162	+	-	N	-	0.834360596327878	N	SKBR3_13_2_1	1	0.84375	1	1	0	1	N	Y	0.84375	0	5	1.05956283828487	1.25823087046328	1.25823087046328	1.05956283828487	2	-	5.6	0.60524179975777
135835	GTTACGATGCAATTCTAGCCAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTT|GTACCATCACAACTTTTCACAACGATGGCAAGCCTTATGTCTTGGGAGCCTGTTTTGCTAGGCAAAGTTACAAGTGACCTAATGGGAGCTCAAATGTGTGTGTGTCTCTCTGTGTGTTTGTGTGTGTGTGTGCACTCAAGACCTCTAACAGCCTCGAAGCCTGGGGTGGCATCCCGGCCTTGCCATTAGCATGCCTCATGCATCATCAGATGACAAGGACAACCCTCATGACGAAGCAACATGAATT	1	1	0.800133926999915	0.844771979185218	N	Y	1.94436162164205	3.7297745213208	1.94436162164205	splitr	26	0	0.461538461538461	0	N	0.519230769230769	N	N	0	2390	ENSG00000168309	ENSG00000074410	+	-	3	15	58613337	63674360	utr3p	utr3p	FAM107A	CA12	58549844	63613577	-	-	0.461538461538461	58551156	63616879	-	+	Y	-	-	N	SKBR3_13_2_1	34	1	16.6666666666667	7	3	1	N	N	1	0.168888888888889	3	0.45528090707553	1.24167520111508	1.24167520111508	0.45528090707553	2	-	-	0.60524179975777
131681	TTTCAGTTCTGTACATCTGCCTATATTCCTTGTGATAGTGCTTTGCTTTTTCATAGATAAGCTTCCTCCTTGCCTTTCGAAGCATCTTTTGGGCAAACTTCTTTCTCAGGCGCTTG|ATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGGTTGAAGCCCCC	1	0.549135603516424	1	0.935920242646516	N	N	3.26680176242833	3.2201465037658	3.2201465037658	splitr	16	0.0707070707070706	0.0707070707070706	0	N	0.191919191919192	N	N	62363	3	ENSG00000147604	ENSG00000230021	-	-	8	1	74208024	659930	coding	intron	RPL7	RP5-857K21.4	74202506	536816	-	-	0.0707070707070706	74204957	568485	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	48	0	33.3333333333333	16	3	1	N	N	0	0	3	0.894006144802859	1.08439634230717	1.08439634230717	0.894006144802859	2	-	0	0.60524179975777
115218	ACATACTGGCCTCTGTGATTACATAGATCAGCCATTAAAATAAAACAAGCCTTAATCTGCAAAAA|AAAAAAAAAAAAAAAAATTAGCCGGGCGTGGCGATGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGCCAGGAGAATTGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGCGCCACTACACTCCAGTCCGGGCGACAGAGCAAGAGTCCATTCCCCCACCACCAAAAAAAAAAAAAAAAGAAAGAAAGATGATGTGATACATATCACATATTTCCTAACACCCCCA	1	0.456026046492622	0.311204357582937	0.306030290211129	N	N	3.21741801681671	2.82813856562505	2.82813856562505	splitr	201	0.046153846153846	0	0	N	0	N	N	129759	0	ENSG00000108298	ENSG00000239353	+	-	17	9	37360980	132275965	downstream	intron	RPL19	RP11-492E3.51	37356536	132264269	+	+	0	37360985	132266537	+	-	Y	-	1	N	SKBR3_13_2_1	2	0.672268907563025	1.5	1	1	1	N	N	0	0.672268907563025	2	0.529781419142435	0.827783467410055	0.827783467410055	0.529781419142435	1	-	0	0.60524179975777
140719	ACTACTTAAAAAGCAAAATAAACTTGGTTTACTTTTTTTTTTTTTT|AAAGGAAACTGTAAGTTACACTGTGGTTAAGACTTGTATCTTCACCCTTGAAAAAGCCCACATTCTATCACAGTGATGTATGGTCAGACTTAACAGCCCCAATTGTTAAACACTTGGATCAAGTCATAACCAGTTTTATTGCAAAAGGACCCTGTACACATTTATCAACTCTAGTACCTTAATAGCTACCCAACAAGTCATTAACATACAGAAACATGCATCATGAGAAGCAAGAAGTATCACCCATCCCTTCTGCATATTAGCAACTTGTCA	9	0.643828295372364	0.395149201946681	0.842622308053094	N	Y	2.54095920868107	3.42783536197374	2.54095920868107	splitr	21	0.434782608695652	0.434782608695652	0.5	N	0.543478260869565	N	N	0	3779	ENSG00000249295	ENSG00000132475	-	-	5	17	68798293	73775860	intron	utr3p	RP11-241G9.3	H3F3B	68773299	73772517	-	-	0.434782608695652	68787617	73774213	-	-	Y	1	0.253448478828782	N	SKBR3_13_2_1	9	0	5.5	2	2	1	N	N	0	0	2	0.413891733705027	0.827783467410055	0.827783467410055	0.413891733705027	1	0	91.5	0.60524179975777
141239	CCCGCACTGAAATTCGAGGAATGATACCGGGGGCTTTCAGACCAACTCGCCTACGCGTCTTGGAACCAATTGGACCCTTTCCATCAATAGCATTACCAAGGGCATCAACTACACGACCCAACAGCTCCTCACCAACTGGAACGTCCA|TACTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAAATACAAATTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATTACCACCCAACAATGACTAATCCAACTAACCTCAAAACAAATGATAGCCATACACAACACTAAGGGACGAACCTGATCTCTTATACTAGTATCCTTAATC	1	9.8523499416246e-09	0.390564714822603	0.421349522516249	N	N	3.38014703354132	3.00463835767282	3.00463835767282	splitr	3	0.0204081632653061	0	0	N	0	N	N	5709	3	ENSG00000152234	ENSG00000230021	-	-	18	1	43684300	659930	coding	intron	ATP5A1	RP5-857K21.4	43664110	536816	-	-	0.0204081632653061	43669859	568961	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	3	0	3	3	2	1	N	N	0	0	2	0.529781419142435	0.827783467410055	0.827783467410055	0.529781419142435	1	-	0	0.60524179975777
125794	ACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATAGTGGCGGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTAGGAGAATCGCTTGAACCTAGGAGGCGGAGGTTGCAGTGAGCCGAG|GATCGCGTCATTGCACTCCAGCCTGAGCAACAAGAGCAAAACAAAAACAAACAAACAAACAAAAAAAACCCACCCAAATCCTTTTTTTTAATGTAGTAGGGTTTATATAGATATACTAATATAATTGCATTTGGAGAATTAGAGTATGTATGGAGCCCACACATACTGTGATATAAAGTG	1	0.161522942144834	0.704121951840997	0.776581847210919	N	Y	3.73080759109069	3.57592836747465	3.57592836747465	splitr	312	0.212121212121212	0.78030303030303	0	N	0.803030303030303	N	N	10	280	ENSG00000188305	ENSG00000068489	-	-	19	17	2282181	57279924	intron	utr3p	C19orf35	PRR11	2274631	57233101	-	+	0.0378787878787878	2279815	57279283	-	-	Y	1.41858518208455	1.37028180227811	N	SKBR3_13_2_1	4	1	3.5	3	2	1	N	N	1	0	2	0.413891733705027	0.430447403053228	0.430447403053228	0.413891733705027	3	0	8	0.60524179975777
138473	TTCACAGTCTTTGTCCAGTTTTAGCCTAGTGATAACCACCTTGCTGGGGTGAATGCCTACGTGGACAGTTGTGCCATTAGCCTTTTCC|CACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCATGGTGAAGAGACATG	1	0.715870716530371	1	0.935920242646516	N	N	3.755916829235	3.51849194026323	3.51849194026323	splitr	10	0.0454545454545454	0	0.5	N	0.0454545454545454	N	N	0	0	ENSG00000226221	ENSG00000137571	+	+	5	8	55800899	70747299	intron	intron	AC022431.1	SLCO5A1	55800462	70584568	-	-	0.0454545454545454	55800639	70602443	+	+	Y	1	1	N	SKBR3_13_2_1	60	1	42.5	25	2	1	N	N	0	1	2	0.703615947298547	0.827783467410055	0.827783467410055	0.703615947298547	2	0	0	0.60524179975777
136382	CGGTGGTATTTCGTCTTTTAGCCTTGGCACTCCAGTTATACTTTCTCTTGCGCTTGGCAGGGTAGCCACATTTGCCACAGGTCGACTTCTGAAGGTGGTAGGCCTTAGAGCCACAGCGGCGGCACAACGTGTGCGTCTTATTGCGACGCTTTCCAAACGATGACGTTCCCTTCG|CCTGCTGATTCCGCCAAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGTGCGTCACTAATTAGATGACAAGGCATTTGGCTACCTTAAGAGAGTCATAG	1	0.394463044055408	1	0.935920242646516	N	N	3.4561676006071	3.41167176744019	3.41167176744019	splitr	5	0.028776978417266	0.00719424460431672	0	N	0.0359712230215827	N	N	9626	356	ENSG00000145592	ENSG00000149262	-	+	5	11	40835437	77705724	coding	intron	RPL37	INTS4	40825364	77589766	-	-	0.028776978417266	40834707	77597717	+	+	Y	-	1.69881089015784	N	SKBR3_13_2_1	40	1	27.5	15	2	1	N	N	0	1	2	0.827783467410055	0.75328295534315	0.827783467410055	0.75328295534315	1	-	7.5	0.60524179975777
140358	AACTGGAGTCTCAATATCAGCAAAGTATGGACAGTAAATTATCAGGAAGATATCGGCGACATTGTGGACTTGGCTTCAGTGAGGTAGAAGACCATGATGGAGAAGGTGATGTGGCTGGAGATGATGATGAT|TTTGATGATGAGGAAGCTGAAGAAAAAGCGCCAGTGAAGAAATCTATACGAGATACTCCAGCCAAAAATGCACAAAAGTCAAAT	3	0.917117481063222	0.195965075777766	0.340417286518453	N	N	2.94014524495127	3.09719324163274	2.94014524495127	splitr	24	0.095238095238095	0.095238095238095	0	N	0.25	N	N	1541	14119	ENSG00000110696	ENSG00000181163	+	-	11	5	16778649	170838141	coding	coding	C11orf58	NPM1	16634679	170814120	+	+	0.095238095238095	16776465	170827173	+	-	Y	-	-	N	SKBR3_13_2_1	22	0.290909090909091	14	6	2	1	Y	N	0	0.290909090909091	2	0.521503584468335	0.45528090707553	0.521503584468335	0.45528090707553	3	-	-	0.60524179975777
98608	CAGAGCTCTGACGAACTCCTGCTGGTTCACGTCTTTTACAGTAACTCCAGGCATCGTGCGGCCTCCGCGCTGCCAGCCAGGGGAAAGGG|CTCCTTCAAGTATGCCTGGGTCTTGCATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACTCAGAGACTTCATCAAA	1	1	0.12875022366714	0.0640797573534845	N	N	3.26932256271472	3.55128313764676	3.26932256271472	splitr	12	0.0898876404494382	0.0674157303370788	0	N	0.157303370786517	N	N	9495	46	ENSG00000105372	ENSG00000172244	-	+	19	5	42375482	43515247	utr5p	intron	RPS19	C5orf34	42363988	43486803	+	-	0.0898876404494382	42364325	43496401	-	+	Y	-	0.972965631057973	N	SKBR3_13_2_1	9	0	8.5	8	2	1	N	N	0	0	2	0.45528090707553	0.430447403053228	0.45528090707553	0.430447403053228	1	-	1	0.60524179975777
138396	TTGCAAGAAACGCTGTGCCTCGTCAGAACCAACGGTCTTATGTCTCCTAAATTCGTCTTTCACGTACTGGTCGCCCAGGGATTTGAGGTCCGGGGGCAGAACACGGTGCAGCTGCAAGACGCGCTTGTACAATGCCCGGACTCGAGAAACGTGCCGCCCCGGCATAG|CGCCCCCCCCGCCCCCGCCCCCCCTGCTCCTCCCGCCTCCCCGCTCCC	1	0.899949484282616	0.321839855309698	0.321669634186996	N	N	3.56807857436608	2.00235441675469	2.00235441675469	splitr	6	0.125	0.125	0	N	0.25	N	N	194	219	ENSG00000196636	ENSG00000126217	-	+	7	13	96811075	113754053	utr5p	intron	ACN9	MCF2L	96745902	113548692	+	+	0.125	96747034	113705050	-	+	Y	-	0.461378112804309	N	SKBR3_13_2_1	11	1	8.5	6	2	1	N	N	0	1	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	2	-	5	0.60524179975777
74037	TGCCTCCCAAGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCTGCCACCAT|GCCCAGCTAATTTTTTAATTTTTAGTAGAGACAGGGTTTTACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCCTCAAGTGATCTGCCCACCTTGGCCTCCCTAAGTGCTGGGATTATAGGCGTGAGCCACCATGCTCAGCCATTAAGGTATTTTGTTAAGAACTTTAAGTTTAGGGTAAGAAGAATGAAAATGATCCAGAAAAATGCAA	1	1	0.12875022366714	0.0640797573534845	N	Y	3.44463079869307	3.02235246345518	3.02235246345518	splitr	284	0.930555555555556	0.597222222222222	0.5	N	0.597222222222222	N	N	407	6055	ENSG00000164168	ENSG00000094804	+	-	4	17	148593195	38459171	utr3p	utr3p	TMEM184C	CDC6	148538534	38443885	+	+	0	148556034	38458764	+	-	Y	-	-	N	SKBR3_13_2_1	220	1	124	28	2	1	N	N	1	0.604651162790698	2	0.579448427187038	0.827783467410055	0.827783467410055	0.579448427187038	1	-	-	0.60524179975777
96242	CTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCC|AGCAGCCCCCACCCTCCAACGAGGAAGAGAATGTGAAGCTGGCCCATGTGAAGCACAAGGAGCAGATCTGAGTGGGCAGGGGCCATCTCCCCACTCCGCTGCCCTGGCCTTGAGCATCCACTGACTGTCCAAGGGCCACTCCCAAGAAGCCCCCTTCACGATCCACCCTTTCAGGCTAAGGAGCTCCCTATCTACCCTCACCCCACGAGACAGCCCCTTCAGGATTTCCACTGGACCTTGCCCAAATA	2	0.00306844484678684	0.173492094339918	0.215420638564212	N	N	3.48593413659447	3.3755202409218	3.3755202409218	splitr	9	0	0	0	N	0.00621118012422361	N	N	83603	6106	ENSG00000130600	ENSG00000165272	-	+	11	9	2022700	33447609	intron	coding	H19	AQP3	2016406	33441152	-	-	0	2018981	33442111	+	+	Y	-	2.45293114141233	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	233	0.60524179975777
76979	TCATGTGGTGTATGCATCGGGATAGTCCGAGTAACGTCGGGGCATTCCGGATAGGCCGAGAAAGTGTTGTGG|GAAGAAAGTTGAAATCAGCCAGCAGGCCAAGTACACTTGCTCTTTCTGTGGCAAAACCAAGATGAAGAGATGAGCTGCGGGGATCTGGCACTGTGGTTCCCGCGTGAAGACAGTGGCTGGCGGTGCCTGGACATACAATACCACCTCCGCTATCACGGTAAAGTCCGCCATCAGAAGCCTGAAGGAGTTGAAAGACCAGT	1	1	0.261533274614987	0.233421673643755	N	N	3.63296356710195	3.53039946453785	3.53039946453785	splitr	10	0	0	0	N	0	N	N	0	0	ENSG00000237973	ENSG00000226243	-	+	1	20	567996	43095482	intron	intron	RP5-857K21.6	RPL37AP1	566454	43095204	+	-	2.22044604925031e-16	567733	43095405	-	+	Y	1	1	N	SKBR3_13_2_1	6	0	5	4	2	1	N	N	0	0	2	0.471836576423731	0.827783467410055	0.827783467410055	0.471836576423731	2	0	0	0.60524179975777
67148	CAGCATGCTGTTTGTAGATGGGTGGCTTTCGGTAAATGTTGATTCCTTGATCAGGTCTGTGGAAATGCTGGGGAGAGC|TTGTGGGAGCCAAGGAGCACCTTGGACATCTGGAGTCTGGCAGGAGTGATGACGGGTGGAGGGGCTAGCTCGAGGCAGGGCTGGTGGGGCCTGAGGCCAGTGAGGAGTGTGGAGTAGGCGCCCAGGCATCGTGCAGACAGGGCGACATCAGCTGGGGACGATGGGCCTGAGCTAGGGCTGGAAAGAAGGGGGAGCCAGGCATTCATCCCGGTCACTTTTGGTTACAGGACGTGGCAGCTGGTTGGACGAGGGGAGCT	1	0.0923709394657222	0.467532148991838	0.526369772984128	N	N	3.40169305405954	3.59272380419397	3.40169305405954	splitr	13	0.166666666666667	0.166666666666667	0	N	0.166666666666667	N	N	2868	83603	ENSG00000099204	ENSG00000130600	-	-	10	11	116444414	2022700	coding	intron	ABLIM1	H19	116190872	2016406	-	-	0.166666666666667	116225483	2018971	+	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.480114411097832	0.827783467410055	0.827783467410055	0.480114411097832	1	-	-	0.60524179975777
73388	TAAATGGATAGGTAGGTGGATGGAGGAGTGAATGGGTGGACGGGTAGATGGATGGAAAATGAACAGATGAAAATGGTTGGATTGATGGTTGGATGGGTGATTGGATGGATGGATGGGTGGATGGGTGACAAATAGGTAGGTGGATGGGTGGATAGGTGAGTGGGTAGATGATTGGGTGGGTGGATGGATG|AAGGAGAGAGGCATGGGTGGTAGGTGGATGGATGGATGAATAAATGGATAGGTAGGTGGATGGGCAGATGGGTAGGCGGATAAGTAGGTAGATGGGTAGGTGGATGAGTAGGTAGATGGATAGA	1	0.70847974388354	1	0.935920242646516	N	N	2.69950670306026	2.95691017644705	2.69950670306026	splitr	0	0.161290322580645	0	0	N	0.185483870967742	N	N	486	4023	ENSG00000151176	ENSG00000115648	-	-	12	2	113827458	238463961	downstream	intron	PLBD2	MLPH	113796371	238394071	+	+	0.338709677419355	113828060	238426475	-	-	Y	-	0.738785741655192	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	120	0.60524179975777
114050	AATGCAAAAATGAAGCATCATGGAATGAAATTCCCACTGTCTGTCATGACAAGCTTAGCTGTCCATTGTTTTAAATTGTGTATTTATTTTTTTGACCACTTGGTTCTAGTTGGGCCTGACTCCTTCAGAGTGCTGCACCCCGATAGTACAACAGCGATGGCTGAACTGTTGGAGTCGATGGAAGGTGCTTGCCGGAGAACACGTGCCTTTTTTTTTT|TTTTTTTTTTTTGAGATGGAGTTTCACTCTTTCCCCCAGGCTGGA	1	1	0.899266171301115	0.897571427984624	N	Y	3.41576000382978	2.82813856562505	2.82813856562505	splitr	262	0.911111111111111	0.911111111111111	0.5	N	0.866666666666666	N	N	3840	875	ENSG00000110090	ENSG00000242028	+	+	11	15	68609399	44095241	utr3p	utr3p	CPT1A	C15orf63	68522088	44088340	-	+	0.911111111111111	68523592	44094779	-	+	Y	-	-	N	SKBR3_13_2_1	47	0.580645161290323	37.5	28	2	1	N	N	0	0.580645161290323	2	0.827783467410055	0.513225749794234	0.827783467410055	0.513225749794234	2	-	-	0.60524179975777
78907	ATTTTCAAGAATTGACACCCAAGACCATCCTTTATTGTAGTATTAGTTCATGGTAACTGCATGAAAAAACATTTCAGGAGGAATTTACAATTTCCAGCTTAAAGAACTTTGCCCACCAACATAACCAATTTATGAAAGTCAATTCATTAAAAGGTATAGAACCTCTTGTTGGGCATGATGGCAAGGGACAAAGCTACAACTTGGCCTGTGCCTTTGGAAGCTGAGGCAGGAGGA|AGAGCCGACATCGAAGGATCAAAAAGCGACGTC	1	1	0.311204357582937	0.306030290211129	N	N	3.47758982994594	3.27751826628863	3.27751826628863	splitr	4	2.22044604925031e-16	2.22044604925031e-16	0	N	0	N	N	1086	0	ENSG00000181350	ENSG00000162669	+	-	17	1	16395467	91870426	intron	intron	C17orf76	HFM1	16344891	91726323	-	-	2.22044604925031e-16	16345110	91852852	-	-	Y	-	1	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0	1	2	0.480114411097832	0.678782443276245	0.678782443276245	0.480114411097832	1	-	0	0.60524179975777
139412	ATAGTAAGACCCTGTCTCTTTACAAAAGTTAAAAAAAAAAAAAAAA|TCCAAATAATCAGCAGTTCAAACACTATTGAATTTCAAACTTCTCCCACCAAGATAGCTCAAACAGCAGTGACAATCTAGATCTTTCCAGGAAGTGAAGGTAGAGCCCCTGGCATTCCTCCTGAGAGCCCTGTGTTAGGCCCTAGAAGTATCTGCTGCTGCTGCAGTTGCTGCTGTTGCTCCATTTGCAACTTCTCAGTCTCA	5	1	0.414263412500737	0.793809624211707	N	N	2.64878194605046	3.29127915838687	2.64878194605046	splitr	27	0.173913043478261	0.173913043478261	1	N	0.195652173913044	N	N	515	0	ENSG00000177548	ENSG00000225155	-	+	16	10	28937073	120403710	intron	downstream	RABEP2	TOMM22P5	28915743	120403272	-	+	0.391304347826087	28925258	120403786	-	+	Y	1.41057140870407	-	N	SKBR3_13_2_1	26	1	26	26	2	1	N	N	1	0.353658536585366	2	0.413891733705027	0.678782443276245	0.678782443276245	0.413891733705027	2	18.5	-	0.60524179975777
140892	AGGCCTCGGGTGTGACGGGGAGATAGAACCTGGGGGGCACAGAAAGGGCAGCAGAGGCCTGGCTGCGGCCTCTCTCCCCCACAGCACAGGCAGAAGCAGCAACGAGACAGGAGACCGAGGAGGCTGGGCCTGTGGGTGGGGGAGGGCTGAGGAGGGGGGTCGGAGGCACTCGGTTGAGCCAGGCCAGGGAGGCGGACCAGGGTGGGAGGGGCACGGAGGGCCTGTCAGCACTTTGGTATGGGGAGGGGAGGGGCTGGGGGGGACACATCCGCCTGTCCGT|CGTCCGTCCGTCGTCCTCCTCGCTTGCGGGGCGCCGGGCCCGTCCTCGCGAGGCCCCCCGGCCGGCCGTCCGGCCGCGTCGGGGCCTCGCCGCGCTCTACCTACCTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATC	2	2.28906214996297e-06	0.51863115005231	0.741210747674579	N	N	3.15149995431096	2.85694657975604	2.85694657975604	splitr	18	0.056872037914692	0.056872037914692	0	N	0.056872037914692	N	N	7371	0	ENSG00000141522	ENSG00000212932	-	-	17	21	79829282	48111157	utr3p	upstream	ARHGDIA	RPL23AP4	79825598	48110676	-	+	0.056872037914692	79826711	9826900	+	-	Y	-	-	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0	1	2	0.827783467410055	0.60428193120934	0.827783467410055	0.60428193120934	2	-	-	0.60524179975777
132781	GGCAAGGGACTTCCTGTAACAACGCATCTCATATTTGGAATGACTATTAAAAAAACAACAATGTGCAATCAAAGTCCTCGGCCACATTGTGAACTTTGGGGGATGCTCGCTCCAACCGACTGCTGTCACCTTCACCGTTCCAG|ACTAGAGTCAAACTCAACAGGGTCTTCTTTCCCCGCTGATTCCACCAAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGTGACAGTGGGAATCCCGTTCATCCATTCATGCGCGTCACTAATTAGATGACAAGGCATTTAGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA	1	1	0.447538936456759	0.5	N	N	3.51377186168787	3.52577267191832	3.51377186168787	splitr	14	0.027972027972028	0	0	N	0.104895104895105	N	N	30285	0	ENSG00000075624	ENSG00000252967	-	+	7	7	5603415	68527662	utr3p	intron	ACTB	AC093693.2	5566782	68527589	-	+	0.083916083916084	5567232	68527658	+	+	N	-	1	Y	SKBR3_13_2_1	35	1	18.5	2	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	0	0.60524179975777
127678	TTGAGGGAGGCGTAGTAGACCGTGCAGAGCTGGGCGCCAGGGCAGGTGGGCTGGGCATGGCGCAGCGAGGAGCAGACCCAGC|TCCGGGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACC	1	0.899552451125161	0.447538936456759	0.5	N	N	3.08677344787462	3.23636353146184	3.08677344787462	splitr	0	0	0	0.5	N	0.097560975609756	N	N	94538	0	ENSG00000169710	ENSG00000162669	-	+	17	1	80056106	91870426	coding	intron	FASN	HFM1	80036215	91726323	-	-	0	80042523	91853148	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	0	1	2	0.811227798061854	0.827783467410055	0.827783467410055	0.811227798061854	2	-	0	0.60524179975777
108368	TCGGCTGCCGATGGTTGGATCGCAATGCGCCCCTTTTCTAGAGCCTTCCCCGGCCATCTACAGGCAGGATGCGGCTGGGAAAAAGACAACTGGAATTTCTCGAAGGTTGATGGTCCGCACGGTTGAGGATTCTACGTGGTTCTCTTGGTTCCCCTGGTGTGTGTGTGTGTGTG|TGTGTGTGTGTGTGTGTTCTGTGACCTCCTGTCCCCATGGTACGTCCCACCCTGTCCCCAGATCCCCTATTCCCTCCACAATAACAGAAA	3	1	0.364528444440307	0.642019534134658	N	N	2.65944201789977	2.74606867576695	2.65944201789977	splitr	17	0	0	0	N	0.122222222222222	N	N	8986	4909	ENSG00000169100	ENSG00000105281	-	+	X	19	1511626	47291851	utr3p	utr3p	SLC25A6	SLC1A5	1505045	47278140	-	-	0	1505478	47278326	+	+	Y	-	1.3060532767824	N	SKBR3_13_2_1	1	0.209876543209877	1	1	0	1	N	N	0	0.209876543209877	5	1.25823087046328	0.670504608602144	1.25823087046328	0.670504608602144	2	-	122.8	0.60524179975777
141013	GTTTCCCCAATGACTTAGAATGGCTTTGTGCTTAGTTTTAATTGTAGTTTGTGCTATTCTGTGAATTAACAATTCAAACAAAATAAGAAAGCCATGTTGTTAAACAGTAGAGGAGCCAGGGACTCTGTCTCCATTCTCTCATCACACACAAGTCATGCATCTACCAAAAAAAA|AAAAAAAAAAACACAACAAAAAAACTTTGATTCAAACTTGGAAACCTACT	2	0.636725521399774	1	0.97388564551795	N	N	3.11910998451155	2.35109885696234	2.35109885696234	splitr	32	0.46	0.46	0.5	N	0.54	N	N	1336	0	ENSG00000089685	ENSG00000049319	-	-	17	2	76221715	31806136	utr3p	intron	BIRC5	SRD5A2	76210277	31747550	+	-	0.46	76220151	31794750	-	-	Y	-	1	N	SKBR3_13_2_1	54	1	38	22	2	1	N	N	0	1	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	2	-	0	0.60524179975777
131391	CTCGCCATTACTGAGGGAATCCTGGTTAGTTT|CTTCTCTTCTACACCCTCCATGGTTCCAGCCGGAAAAAGAG	2	0.00147398475179107	0.935695919090345	0.96241881209261	N	N	3.74715864506105	3.57808779297027	3.57808779297027	splitr	5	0.0625	0.0625	0	N	0.0625	N	N	0	0	ENSG00000141161	ENSG00000137970	+	-	17	1	33516364	97145176	intron	intron	UNC45B	RP11-122C9.1	33474836	97144430	+	-	0.0625	33478212	97145156	+	-	Y	1	1	N	SKBR3_13_2_1	9	1	7.5	6	2	1	N	N	1	0	2	0.422169568379128	0.620837600557541	0.620837600557541	0.422169568379128	2	0	0	0.60524179975777
86130	AAAGTGGTTTGGTTTAGACGTCCGGGAATTGCATCTGTTTTTAAGCCTAATGTGGGGACAGCTCATGAGTGTAAGACGTCTTGTGATGTAATTATTATACGAATGGGGGCTTCAACCGGGAGTACTACTCGATTGTCAAAGTCAAGGAGTCGCAGGTCGCCT|GGATACTGCAGCTTGGAATAATGGAATAGGACCACAGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCATATTGCACCGCTAGAGGTGAAATTCTTGGACTGGCAGTTTAGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACG	1	1	0.526775457519482	0.600084425908804	N	N	3.76848670091893	3.78465029545248	3.76848670091893	splitr	35	0.0308641975308642	0	0	N	0	N	N	794	1	ENSG00000175387	ENSG00000163046	+	+	18	2	45457515	133015542	intron	intron	SMAD2	ANKRD30BL	45357922	132905164	-	-	0.0308641975308642	45379808	133012936	+	+	Y	0.235886398771963	0.81549815498155	N	SKBR3_13_2_1	9	1	4.73076923076923	3	26	1	N	N	0	1	26	1.31617571318199	1.30789787850789	1.31617571318199	1.30789787850789	1	2.46153846153846	0	0.60524179975777
125171	TTGGGGACAGTATTAAGTATTAAGAACAGTTTTTTTTTTTTGTTTTTTTTTTTT|TTTTTTTGGTAGATGCATGACTTGTGTGTGATGAGAGAATGGAGACAGAGTCCCTGGCTCCTCTACTGTTTAACAACATGGCTTTCTTATTTTGTTTGAATTGTTAATTCACAGAATAGCAC	2	0.257253749072857	0.871805782194921	0.947136850676906	N	N	2.27964834627386	3.12845685570642	2.27964834627386	splitr	24	0.351851851851852	0.351851851851852	0.5	N	0.481481481481482	N	N	696	1336	ENSG00000166900	ENSG00000089685	-	-	11	17	59573354	76221715	utr3p	utr3p	STX3	BIRC5	59480929	76210277	+	+	0.351851851851852	59572654	76220152	-	-	Y	-	1.4138237074721	N	SKBR3_13_2_1	12	0.875	8.5	5	2	1	N	N	0.875	0	2	0.463558741749631	0.827783467410055	0.827783467410055	0.463558741749631	2	-	34	0.60524179975777
131095	TCTTCTATCTTCTTCATGGCAGACTCAGTGGTCAGCGGAAACTTGATGATAGCATAGTGGTCAAGCTTGTTTCTCCTGGGAGCGCTCTTCCGAGGATATTTGGGCTGTCTCCGGAGTCGCAGTGTCTTCGGCCGCCGGAAGGTGGGTGACGTGCGGATCTTCTTCTTTTTGTGGCTGTGGACACCTTTCAACACTGCCTTCTTGGCCTTTAAAGCCTTCGCTTTGGCTTCAGCTTTAGGAGGGGCAGGAGCTTCCTTCT|ATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCTCATCCTACCAGGCTTCGGAATAATCTC	1	0.550847021458261	0.704121951840997	0.776581847210919	N	Y	3.06592962755906	3.60256518892881	3.06592962755906	splitr	334	0.786666666666667	0	0	N	0.133333333333333	N	N	23502	0	ENSG00000198242	ENSG00000237973	-	-	17	1	27051377	567996	coding	intron	RPL23A	RP5-857K21.6	27046411	566454	+	+	0	27047040	567143	-	-	Y	-	1	N	SKBR3_13_2_1	32	0	23	14	4	1	N	N	0	0	4	1.5065659106863	0.877450475454658	1.5065659106863	0.877450475454658	1	-	0	0.60524179975777
128831	GACTAGAGTCAAACTCAACAGGGTCTTCTTTCCCCGCTGATTCCACCAAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGTGACAGTGGGAATCCCGTTCATCCATTCATGCGCGTCACTAATTAGATGACAAGGCATTTAGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCAT|TTCATTGATATTTCTCCCAACTGTTATTTGGAAAAAAGGTAAAACAAAAAAGGTTCAAGGTCTTGGTGCTCAGCCCAAGGGGCTCCATGT	1	1	0.163783040919641	0.102428735043176	N	N	3.53871326596283	3.34831435801417	3.34831435801417	splitr	17	0.022222222222222	0	0	N	0.0666666666666665	N	N	0	3151	ENSG00000252248	ENSG00000143420	-	-	7	1	68527457	150602088	downstream	utr3p	AC093693.1	ENSA	68527371	150573327	+	-	0.0444444444444443	68527466	150595070	-	-	Y	-	1.22095584561562	N	SKBR3_13_2_1	5	1	5	5	2	1	N	N	1	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	129	0.60524179975777
88639	AACAAGCGGATTCTCATGGAACACATCCACAAGCTGAAGGCAGACAAGGCCCGCAAGAAGCTCCTGGCTGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCAAGACTTTATC|CAAGAAGAAGATGAGACCACTGCAATGGTAATTTCATGACATGTACAGGTGTTGATAATTCCTTTGTGCTGGACAAGGTAAAACAAAGAGGGGTGATGACTTTGAAATGTTCTTAATAAAAAATTCCAGCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1	0.0735879982207793	0.447538936456759	0.5	N	N	3.45400817511148	3.51207644450867	3.45400817511148	splitr	19	0.0479041916167665	0.0479041916167665	0	N	0.275449101796407	N	N	129759	2	ENSG00000108298	ENSG00000236432	+	-	17	2	37360980	228189917	coding	intron	RPL19	AC097662.2	37356536	228085768	+	-	0.0479041916167665	37360876	228085902	+	+	Y	-	-	N	SKBR3_13_2_1	16	0	11.5	7	2	1	N	N	0	0	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	1	-	-	0.60524179975777
140903	TCAGACGTGGCGACCCGCTGAATTTAAGCATATTTGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTACGGAAAAATACAAAAATTAGCCAGGTGTGGTGGTGCACGTCTGTAATCCTAGGTACTTGGGAGGCTGAGGCA|GGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACCCACTAATAGGGAACGTGAG	1	0.00118636350693865	0.311204357582937	0.306030290211129	N	N	3.75847748231474	3.63552422018169	3.63552422018169	splitr	69	0	0	0	N	0	N	N	0	0	ENSG00000141161	ENSG00000162669	-	+	17	1	33516364	91870426	intron	intron	UNC45B	HFM1	33474836	91726323	+	-	0	33478046	91852944	-	+	Y	1	1	N	SKBR3_13_2_1	2	1	1.66666666666667	1	2	1	N	N	0.980263157894737	1	3	1.04300716893667	0.620837600557541	1.04300716893667	0.620837600557541	1	0	0	0.60524179975777
135956	TCTGAACCCAGGGAGGGGAAAACCACAGAACAAAACAGCAAGTCGGGCTTGGGCCGCCGGCTTCCAGGGCGCCCAGGACAGTGGGCGGGCGAGTGTGTGGGTGTG|GTGTCGTCTGTGAATGCTAAGTCCATCACCCTTTCCGGCACACTGCCAAATAAACAGCTATTTAAGGGGGAGTCGGCCGTCCGTGTCTTGTGGT	1	0.636725521399774	0.375556752806067	0.399915574091196	N	N	2.87998967836057	3.64297278570613	2.87998967836057	splitr	9	0	0	0	N	0.0319148936170213	N	N	28175	37145	ENSG00000117984	ENSG00000149925	+	-	11	16	1785222	30081741	utr3p	utr3p	CTSD	ALDOA	1773982	30064444	-	+	0	1774650	30081665	+	-	Y	1.44693493570612	0.452055143036816	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.579448427187038	0.430447403053228	0.579448427187038	0.430447403053228	1	1231.5	1938.5	0.60524179975777
103931	GATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGACTTTTCGCTTCGAAGCGAAGGCTTCTCAAATTATGAAAATTATTAATATTACTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATATTTCATGTGGTGTATGCATCGGGATAGTCCGAGTAACGTCGGGGCATTCCGGATAGGCCGAGAAAGTGTTGTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATAGCGAAATGGATTTTGGCGTAGGTTTGGTCTAGGGTGTAGCCTGAGAATAGGGGAAAT|TCAATGAAGCACGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTTGTCATCTAATTAGTGACGCACATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAATGGGCTTGGCGGAATCAGCAGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCAGGGTGAAGAGACACGA	1	9.34532239524444e-12	0.612610548302747	0.693969709788871	N	N	3.24744567262926	3.57063922744582	3.24744567262926	splitr	15	0.0403587443946187	0.0224215246636771	0.5	N	0.0269058295964125	N	N	0	356	ENSG00000237973	ENSG00000149262	-	-	1	11	567996	77705724	intron	intron	RP5-857K21.6	INTS4	566454	77589766	+	-	0.0403587443946187	567642	77597548	-	-	Y	1	1.69881089015784	N	SKBR3_13_2_1	12	1	12	12	2	2	N	N	0	1	2	0.579448427187038	0.827783467410055	0.827783467410055	0.579448427187038	2	0	7.5	0.60524179975777
131724	TTGGAATCCATCAGTGTTCTATTTAGTCATCTTCTCCTTCATCCTCCTCTCCTTCCTCCCCTTCATCATCATCTTCATCTTCTTCACCTTCATCCTCATCCCCTTCTTCGTCAATATCTTCTAATCCTTCCTCCTCTTCATCATCATCATCATCTTCTTCTCCTT|CTCCTCCTCCTCTTCCTCGTCTTCTTCCTCTTCTTCCTCCTCTGCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTCCCCCTCCAGCCTCTCCCCCTGCTTCTTCCCCACCCCGGGTCCT	2	0.643828295372364	0.149372103101681	0.171177951222925	N	N	2.46877474624778	2.14728962211025	2.14728962211025	splitr	5	0.0416666666666665	0.0416666666666665	0	N	0.0416666666666665	N	N	7284	553	ENSG00000119335	ENSG00000174282	-	+	9	17	131458679	7387517	coding	coding	SET	ZBTB4	131445703	7362685	+	-	0.0416666666666665	131456203	7369863	-	+	Y	-	1.75405052416905	N	SKBR3_13_2_1	8	0.615384615384615	5	2	2	1	N	N	0.550724637681159	0.615384615384615	2	0.571170592512938	0.430447403053228	0.571170592512938	0.430447403053228	3	-	6.5	0.60524179975777
141602	AAACGATCAGAGTAGTGGTATTTCACCGGCGGCCCGCAGGGCCGGCAGACCCCGCCCTGGACCCCTCGCGGGGACACCGGGGGGCGCCGGGGGCCTCCCACTTATTCTACACCTCTCACGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGG|ATGCAGTCCAGAGCCTCAAGCAGCGTGGTTCCACTGGCATTGCCATCCTTACGGGTGACTTTCCATCCCTTGAACCAAGGCATGTTAGCACTTGGCTCCAGCATGTTGTCACCATTCCAACCAGAAATTGGCACAAATGCTACTGTGTCG	1	0.221307271943572	0.375556752806067	0.399915574091196	N	N	3.45041445226185	3.6508225788147	3.45041445226185	splitr	6	0	0	0	N	0	N	N	0	0	ENSG00000226958	ENSG00000196205	-	+	X	9	108297792	135896553	intron	intron	RN28S1	EEF1A1P5	108297361	135894816	-	+	0	108297534	135895576	-	+	Y	1	1	N	SKBR3_13_2_1	114	1	65	16	2	2	N	N	1	0	2	0.827783467410055	0.645671104579843	0.827783467410055	0.645671104579843	2	0	0	0.60524179975777
137915	CCCCTTAAATAGCTGTTTATTTGGCAGTGTGCCGGAAAGGGTGATGGACTTAGCATTCACAGACGACACCACACACCACTGTCACGAGGGAAGAAAGAGCGCGGGCAAGCC|ACCCTGGAGGAGAAGAGGAAAGAGAAAGCCAAGATCCACTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGAACGTGGAGAAGAAAATTGACAAATACACAGAGGTCCTCAAGACCCACGGACTCCTGGTCTGAG	1	1	1	0.935920242646516	N	N	3.32167753656001	3.04524884294138	3.04524884294138	splitr	13	0.0360360360360361	0.0360360360360361	0	N	0.0990990990990992	N	N	37145	0	ENSG00000149925	ENSG00000236552	-	-	16	10	30081741	98510675	utr3p	intron	ALDOA	RPL13AP5	30064444	98510045	+	+	0.0360360360360361	30081623	98510507	-	-	Y	0.514348159982761	1	N	SKBR3_13_2_1	22	0	12.75	9	4	1	N	N	0	0	4	0.703615947298547	1.06784067295897	1.06784067295897	0.703615947298547	2	1144.5	0	0.60524179975777
139209	AAGTGCAGCATATTCATTTCCAAGCTAGAGGGTTTTGTGTCCGGATTCAAAGGCCCAGGCTTGAGCTGGGTAGCACCATTTCTTTCATGTTGTGGGTTCTGGGAGC|TGAAGGATTTTATGGAGCTGGTGCTTTGGAGGAATCTTAAGGGAAAGGAGTAGAAGCTCAGGCCTTTGAAGGATTTC	1	0.419085444591636	0.209527252024466	0.160545729398276	N	N	3.32895826821511	3.32593360681895	3.32593360681895	splitr	16	0	0	0	N	0	N	N	83603	36259	ENSG00000130600	ENSG00000100867	-	-	11	14	2022700	24114848	intron	utr3p	H19	DHRS2	2016406	24099378	-	+	0	2017333	24114703	+	-	Y	-	2.27181387041857	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.662226773928044	0.488392245771932	0.662226773928044	0.488392245771932	2	-	1254.5	0.60524179975777
134029	TTGTCTGCCTTCAGCTTGTGGATGTGTTCCATGAGAATCCGCTTGTTTTTGAACACATTCCCCTTCACCTTCAGGTACAGGCTGTGATACATGTGGCGATCGATCTTCTTAGATTCACGGTATCTTCTGAGCAGCCGGCGCAAAATCCTCATTCTCCT|CATCCATCTTCCCTACCCTTCCTGCCAAGCCAGGGACTAAGCAGCCCAGAAGCCCAGTAACTGCCCTTCCCCTGCACATGCTTCTGATGGTGTC	1	1	0.375556752806067	0.399915574091196	N	N	3.6272104187567	3.41423242051993	3.41423242051993	splitr	7	0.074468085106383	0.074468085106383	0	N	0.234042553191489	N	N	129759	0	ENSG00000108298	ENSG00000226415	-	-	17	1	37360980	77166223	coding	downstream	RPL19	TPI1P1	37356536	77165474	+	+	0.074468085106383	37359295	77166228	-	-	Y	-	-	N	SKBR3_13_2_1	21	0	19.5	18	2	1	N	N	0	0	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	2	-	-	0.60524179975777
95648	TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC|AGACTTCACAGAGAATGCAGTTGTCTTGACTTCAGGTCTGTCTGTTCTGTTGGCAAGTAAATGCAGTACTGTTCTGATCCCGCTGCTATTAGAATGCATTGTGAAACGACTGGAGTATGATTAAAAGTTGTGTTCCCCAATGCTTGGAGTAGTGATTGTTGAAGGAAAAAATCCAGCTGAGTGATAAAGGCTGAGTGTTGAGGAAATTTCTGCAGTTTTAAGCAGTCGTATTTGTGATTGA	6	1	0.105297240818105	0.23970044868304	N	Y	0.776482662581515	3.51310951427856	0.776482662581515	splitr	0	0.357142857142857	0	0	N	0.92857142857143	N	N	0	0	ENSG00000215231	ENSG00000251562	-	-	5	11	5070117	65273940	intron	intron	CTD-2247C11.3	MALAT1	5034472	65265233	+	+	0.357142857142857	5059793	65271795	-	-	Y	-	1	N	SKBR3_13_2_1	12	0	6.5	1	1	1	N	N	0	0	2	0.413891733705027	0.827783467410055	0.827783467410055	0.413891733705027	2	-	0	0.60524179975777
141269	CCCGTACATTCCAGGGCAACAATGGAGGAAGGGCAGGCAACGCATGAGGAATTAACAGTCTTTATTGGGCTCAGACCAGGAGTCCGTGGGTCTTGAGGACCTCTGTGTATTTGTCAATTTTCTTC|CCACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTATCCCGATGCATACACCACATGAAATATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATAATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATGCCCC	3	1	0.397375327750185	0.404166281443956	N	N	3.32912610208445	3.63296356710195	3.32912610208445	splitr	27	0.0559999999999999	0.0320000000000001	0	N	0.128	N	N	29339	0	ENSG00000142541	ENSG00000237973	-	-	19	1	49995565	567996	coding	intron	RPL13A	RP5-857K21.6	49990811	566454	+	+	0.0559999999999999	49995018	567733	-	-	Y	-	1	N	SKBR3_13_2_1	44	0	26	2	8	2	N	N	0	0	8	1.16717468904818	1.30789787850789	1.30789787850789	1.16717468904818	1	-	0	0.60524179975777
128251	GAGTTAAGAAAAAACAACTTCTCAGATACTGGAAACTTTGGTTTTGGGATCCAGGAACACATCGATCTGGGTATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTATGTGGTGCTGGGTAGGCCAGGTTTCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGGGCCAAACACAGAATCAGCAAAGAGGAGGCCATGCGCTGGTTCCAGCA|GAAGCTATTGAAATATTTGAAGAAACTCTCCACCCTGCCTATTACAGTAGACATTCTTGCGGAGACTGGGGTTGGGAAAACAGTAAATAGCTTGCGAAAACACGAGCATGTTGGAAGCTTTGCCA	1	0.0102415911289966	1	0.935920242646516	N	Y	3.55657227767558	3.36191729946799	3.36191729946799	splitr	352	1	0.032	0	Y	0.832	N	Y	7896	889	ENSG00000142676	ENSG00000011007	+	-	1	1	24022915	24088549	coding	intron	RPL11	TCEB3	24018269	24069645	+	+	0	24022398	24075511	+	-	N	-	-	N	SKBR3_13_2_1	3	0	2.5	2	2	1	Y	N	0	0	2	0.794672128713653	0.827783467410055	0.827783467410055	0.794672128713653	4	-	-	0.60524179975777
140321	AATGCAACAACACAGTTTTCACACTTCAAATTTTACATGAGGGGTTCTTCACGATTCTCCTGGAACCCAGTCTAGCAAAATGAGAGGAAAGGCCCTAGGGAGATTTATTTCTGTTAAATAGTTAACTCTGCTGAGTATGACAAATAGTGTCTACTATCTCAACCCTCCAAAATTTGCAGAGTGTTGGGACTGTCATTTGTGATTTT|TTTTTTTTTTTTTTTGGTAGAGATAGAGTTTCCCTATGTTGCCCA	1	0.756687591607622	0.375556752806067	0.399915574091196	N	N	3.23896403733493	2.66071997554862	2.66071997554862	splitr	22	0	0.311111111111111	0	N	0.4	N	N	3305	31	ENSG00000173598	ENSG00000232938	+	+	12	17	93797024	81188573	utr3p	upstream	NUDT4	AC139099.1	93771701	81174666	+	+	0.333333333333333	93795702	67911898	+	+	Y	-	-	N	SKBR3_13_2_1	14	0.581818181818182	12	10	2	1	N	N	0	0.581818181818182	2	0.827783467410055	0.45528090707553	0.827783467410055	0.45528090707553	1	-	-	0.60524179975777
61157	TCCTAGGGAGAGGAGGGTGGATGGAATTAAGGGTGTTAGTCATGTTAGCTTGTTTCAGGTGCGAGATAGTAGTAGGGTTGTGG|AGCTGGAGGCCAAGGTGGATGCCCTGAATGATGAGATCAACTTCCTCAGGACCCTCAATGAGACG	1	0.114811196399023	1	0.935920242646516	N	N	3.27291628556435	3.3414348539432	3.27291628556435	splitr	12	0.107692307692308	0.0923076923076922	0	N	0.184615384615385	N	N	0	34840	ENSG00000225630	ENSG00000135480	-	-	1	12	566063	52662180	intron	coding	RP5-857K21.8	KRT7	565020	52626954	+	+	0.107692307692308	565693	52632495	-	-	Y	1	0.909023279163966	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.480114411097832	0.662226773928044	0.662226773928044	0.480114411097832	1	0	3874	0.60524179975777
139838	GAGGAGGATGTGAAACTCTTAAGTATATCTGGAAAGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCTGCTGATGAAGATGATGACGATGATGATGAAGAGGATGATGATGAAGATGATGATGATGAT|GAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACTAAAAAAAAAAAGGCCGCCGTGACCTATTCACCCTCCACTT	6	0.119288165897262	0.15187762559675	0.369904807636268	N	N	2.17516719999699	3.14478828410932	2.17516719999699	splitr	32	2.22044604925031e-16	2.22044604925031e-16	0	N	0.533333333333333	N	N	14119	14698	ENSG00000181163	ENSG00000187514	+	-	5	2	170838141	232578251	coding	coding	NPM1	PTMA	170814120	232571605	+	+	2.22044604925031e-16	170827169	232577158	+	-	Y	-	-	N	SKBR3_13_2_1	144	0.106796116504854	91.3333333333333	40	3	1	Y	N	0.106796116504854	0	3	0.852616971432356	1.04300716893667	1.04300716893667	0.852616971432356	3	-	-	0.60524179975777
127766	GAGGTGGGTGGATCACCTAAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTATCTCTACTG|AAAAATGCAAAAATTAGCTGGGCGTGGTTGCGGGTGCTTGTAATCCCAGCTACTCAGGAGGCTGAGGCAAGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCGAGAACATGCCATTGCACTCCAGCCCGGGCACCAAAAAAAAAAAAAAAAAAAAAAACCTTTCATTTGGCCGGGCATGGTGGCTTATGCCTGTAATCCTGGCACTTTGGGAGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCTCATCTCTACTAAAAATACAAAAATTAGGCCGGGCACG	1	0.00973070718851297	0.254583648908217	0.223418152789081	N	Y	3.56911164413597	3.0521588522359	3.0521588522359	splitr	397	0.917808219178082	0.657534246575343	0.5	N	0.657534246575343	N	N	681	106	ENSG00000152061	ENSG00000125347	+	-	1	5	174964445	131826490	utr3p	utr3p	RABGAP1L	IRF1	174128548	131817301	+	-	0	174961414	131818522	+	+	Y	-	-	N	SKBR3_13_2_1	2346	1	1210	74	2	1	N	N	1	0.666666666666667	2	0.653948939253943	0.827783467410055	0.827783467410055	0.653948939253943	1	-	-	0.60524179975777
135710	GGTGTCCGCGCACGATCAAGCCGGTCCCCACGGTCCCCTCCCCGTTCACTCCGCTCTAGGCGGTCTCCTCG|GGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATA	1	0.195197976807496	0.254583648908217	0.223418152789081	N	N	3.10334761756211	3.24165267149066	3.10334761756211	splitr	8	0.0845070422535211	0.0704225352112676	0	N	0.126760563380282	N	N	15704	3	ENSG00000114867	ENSG00000230021	-	-	3	1	184053146	659930	coding	intron	EIF4G1	RP5-857K21.4	184032283	536816	+	-	0.0845070422535211	184045044	569331	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	3	0	3	3	2	1	N	N	0	0	2	0.612559765883441	0.44700307240143	0.612559765883441	0.44700307240143	2	-	0	0.60524179975777
134547	TGAATAGGTCACGGCGGCCTTTTTTTTTTTAGTTTAACTTTTCCTTTTTTGCTGTCTAGTCATCCTCGTCGGTCTTCTGCTTCTTGGTATCGACATCGTCATCCTCATCA|ATCCTAGTCCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAA	1	1	0.612610548302747	0.693969709788871	N	N	3.44825502676623	3.11807691474166	3.11807691474166	splitr	5	0.0363636363636364	0	0	N	0.172727272727273	N	N	14698	3	ENSG00000187514	ENSG00000230021	-	-	2	1	232578251	659930	coding	intron	PTMA	RP5-857K21.4	232571605	536816	+	-	0.0363636363636364	232577220	568350	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	18	0	12	2	3	1	N	N	0	0	3	0.836061302084155	0.44700307240143	0.836061302084155	0.44700307240143	1	-	0	0.60524179975777
125535	CAGGCTTCGGAGGCGTGCGCTGCTGCTGGGTGTGCAGCCCCCGAGGGGTCTCGGCAGCGCCCGGGTCTGGCTTTGCGTATTACAGTTCATCTTTCACAG|CTTTCATGATCACGCCCTCATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTACGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCA	1	0.000800012210714794	1	0.935920242646516	N	N	3.47382827322697	3.26294691975352	3.26294691975352	splitr	12	1.11022302462516e-16	0	0	N	0.0909090909090909	N	N	25020	3	ENSG00000185624	ENSG00000230021	-	-	17	1	79818545	659930	coding	intron	P4HB	RP5-857K21.4	79801037	536816	-	-	1.11022302462516e-16	79801907	568202	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	3	1	N	N	0	0	3	1.18373035839638	0.943673152847462	1.18373035839638	0.943673152847462	3	-	0	0.60524179975777
96679	CAATGAATGAAGTGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTTTGTTATAGTTTTTTATTTTTATG|GGCTTTGGTGGCAGCCGTGGTGGTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGTAATGAT	2	0.000444544879256599	0.170189729447764	0.209300629116717	N	N	2.67702089872798	3.09759446921686	2.67702089872798	splitr	15	0.114285714285714	0.0857142857142859	0	N	0.214285714285714	N	N	3	0	ENSG00000230021	ENSG00000224578	-	-	1	16	659930	51680723	intron	intron	RP5-857K21.4	AC084058.1	536816	51679669	-	+	0.114285714285714	569037	51680407	-	-	Y	0.828962371721779	1	N	SKBR3_13_2_1	82	1	37.6666666666667	18	6	1	N	N	0	1	6	1.02645149958847	0.960228822195664	1.02645149958847	0.960228822195664	2	0	0	0.60524179975777
82022	GACTTTTCCATCAAACATGGGCGACTGCACCATGATGGCCATCCGGAGCGAGTCCTTGGGGATGCTCTCGCTGCATTTCTTGCAAGAGGCGCGCCCGCTCTTGGCGTACTCGACTCGATAGAGCTTATCCGAAGACT|CCGCCCTCCTGCCCCCCCCTCCCCCCCCCCCCCCGCCGTATTCCTGCAGCATCACTCCACAAT	1	0.0787680464440874	0.375556752806067	0.399915574091196	N	N	3.66016945000958	2.01047802324069	2.01047802324069	splitr	15	0.206349206349206	0.206349206349206	0	N	0.206349206349206	N	N	5547	0	ENSG00000143799	ENSG00000040341	-	+	1	8	226595780	74659943	coding	intron	PARP1	STAU2	224102741	74332604	-	-	0	226595623	74539477	+	+	Y	-	1	N	SKBR3_13_2_1	13	0.450980392156863	7.75	5	4	1	N	N	0	0.450980392156863	4	1.5396772493827	0.422169568379128	1.5396772493827	0.422169568379128	3	-	0	0.60524179975777
59082	TGGAAGATGGCCACGAGGAGGCCAATGGCCTGATCCAGGGGGCATGCCATGGCTGAGGGCTGGGCTTGGAGCGGTAGGGAGGCGGCCAAATGCGACGCGAGCGGTCGAGGGGATGGGCTGTGTCGCAGTCCGACTGGCCTTATAGCGGTCGGTGCCCCGGAGGCCAGCTCGGCCAAGCCCACCCCGCCCGCCCAAGTCCCGCCCGCGCCCCACCCTGCGCCGTGGCTTACACAACGCACATTCGCGGTTTACCCCCTCGACTTTCCACGCCTCCTGCCCGGGGCTGTTCCGGGTTAGGACGGGATGGGGGAGCCCAGCAG|GTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCAGTT	2	0.00018361837913748	0.200408824796317	0.265663619644791	N	N	3.31791597984103	3.5010341561346	3.31791597984103	splitr	3	0	0	0	N	0	N	N	24283	0	ENSG00000197956	ENSG00000251948	-	+	1	19	153508720	24184165	utr5p	intron	S100A6	AC092279.1	153507075	24184075	-	-	0	153508673	24184148	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.703615947298547	0.629115435231642	0.703615947298547	0.629115435231642	2	-	0	0.60524179975777
49956	TAGAGGGAAGGTTAATGGTTGATATTGCTAGGGTGGCGCTTCCAATTAGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGGTTAGGCGTACGGCCAGGGCTATTGGTTGAATGAGTAGGCTGATGGTTTCGATAATAACTAGTATGGG|GGTCAGGGGTTGAGGTCTTGGTGAGTGTTTTAGTGGGGTTAGCGATGGAGGTAGGATTGGTGCTGTGGGTGAAAGAGTATGATGGGGTGGTGGTTGTGGTAAACTTTAATAGTGTAGGAAGCTGAATAATTTATGAAGGAGAGGGGTCAGGGTTGATTCGGGAGGATCCTATTGGTGCGGGGGCTTTGTATGATTATGGGCGTTGATTAGTAGTAGTTACTGGTTGAACATTGTTTGTTGGTGTATATATTGTAATTGAGATTGCT	1	0.000351441779616649	1	0.935920242646516	N	N	3.46977054206092	2.85650549937857	2.85650549937857	splitr	15	0.0331125827814568	0.0331125827814568	0	N	0.172185430463576	Y	N	38194	19641	ENSG00000198899	ENSG00000198695	-	-	MT	MT	9207	14673	coding	coding	MT-ATP6	MT-ND6	8527	14149	+	-	0.0331125827814568	8941	14426	-	+	N	-	-	N	SKBR3_13_2_1	2	0	1.66666666666667	1	2	2	N	N	0	0	3	0.695338112624446	0.943673152847462	0.943673152847462	0.695338112624446	2	-	-	0.60524179975777
73971	CTAGGGAGAGGAGGGTGGATGGAATTAAGGGTGTTAGTCATGTTAGCTTGTTTCAGGTGCGAGATAGTAGTAG|GGCAGTGGTGCTGGGAGTGTCGTGGACGCCGTGCCGTTACTCGTAGTCAGGCGGCGGCGCAGGCGGCGGCGGCGGCATAGCGCACAGCGCGCCTTAGCAGCAGCAGCAGCAGCAGCGGCATCGGAGGTACCCCCGCCGTCGCAGCCCCCGCGCTGGTGCAGCCACCCTCGCTCCCTCTGCTCTTCCTCCCTTC	1	1	0.311204357582937	0.306030290211129	N	N	3.36716658670346	3.42779550918039	3.36716658670346	splitr	14	0	0	0	N	0.0547945205479452	N	N	0	9025	ENSG00000225630	ENSG00000198668	-	-	1	14	566063	90874617	intron	utr5p	RP5-857K21.8	CALM1	565020	90863327	+	+	0	565701	90863373	-	-	Y	1	0.011037271723922	N	SKBR3_13_2_1	2	0.260416666666667	2	2	3	1	N	N	0	0.260416666666667	3	0.571170592512938	0.794672128713653	0.794672128713653	0.571170592512938	1	0	3.66666666666667	0.60524179975777
30405	CTTGTACTGGGCACAGCGCTCAGACAGCCCATCCAACCCTTGGGTGGTAGTCTCGCCATTTGTCCCTGCCAGGGGGACCACGCCCTTGTCTACCTTGATGCCCACAACAC|TTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTATCCCGATGCATACACCACATGAAATATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAG	3	0.857250964338357	0.716823677278582	0.887412098001787	N	N	3.48639814491089	3.53039946453785	3.48639814491089	splitr	10	0.029126213592233	0.00970873786407767	0	N	0.0776699029126213	N	N	37145	0	ENSG00000149925	ENSG00000237973	-	-	16	1	30081741	567996	coding	intron	ALDOA	RP5-857K21.6	30064444	566454	+	+	0.029126213592233	30078966	567742	-	-	Y	-	1	N	SKBR3_13_2_1	4	0	3	2	2	2	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	0	0.60524179975777
114243	GCATGGTGGCTCACGCCTGTAATCCCAGTACTTTGGGAGGCTGAGGCGGGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACATGGTGAAACCCCGTC|TCTACTAAAAAATACAAAAATTAGCTGGACACGGTGGCACACTCCTGTAATCCCAGCTACTTGGGAGGCTGAGACAGGAGAATTGCTTGAACCCAGGAG	1	0.547013857249903	0.899266171301115	0.897571427984624	N	Y	3.66745018166468	3.42320856935422	3.42320856935422	splitr	205	0.929292929292929	0.858585858585859	0	N	0.848484848484849	N	N	11	6	ENSG00000172379	ENSG00000248265	+	+	15	12	80890278	54516018	intron	intron	ARNT2	RP11-834C11.3	80696692	54452038	+	+	0.868686868686869	80767725	54514845	+	+	Y	-	-	N	SKBR3_13_2_1	820	1	456	92	2	1	N	N	1	1	2	0.562892757838837	0.827783467410055	0.827783467410055	0.562892757838837	1	-	-	0.60524179975777
65182	TGTGCATTTTTGGCTGGAGTATCTCGTATAGATTTCTTCACTGGCGCTTTTTCTTCAGCTTCCTCATCATCAAAATCATCATCATCATCATCTTCATCATCATCCTCTTCATCATCATCGTCATCATCTTCATCAGCAGCAAGTTTTACTTTTTTCTGTGGAACCTTGCTACCACCTCCAGGGGCAGACCGCTTTCCAGATATACTTAAGAGTTTCACATCCTCCTCCTCTTCATCTTCTGACTC|CTACCCCTCACAATCATGGCAAGCCAGCGCCACCTATCCAACGAACCACTATCACGAAAAAAACTCTACCTCTCTATGCTAATCTCCCTCCAAATCTCCTTAATTATAACATTCACAGCCACGGAGCTAATCATATTTTATATCTTCTTCGAAACCACACTTATCC	1	5.02165915419e-05	0.899266171301115	0.897571427984624	N	N	3.26037691910396	3.40165320126619	3.26037691910396	splitr	7	2.22044604925031e-16	2.22044604925031e-16	0	N	0.00602409638554235	N	N	14119	0	ENSG00000181163	ENSG00000232177	-	-	5	X	170838141	125607264	coding	intron	NPM1	RP11-10B2.3	170814120	125606868	+	+	0	170819731	125607084	-	-	Y	-	1	N	SKBR3_13_2_1	30	0.39	22.5	15	2	1	N	N	0.39	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
9527	CGCAGGCGCTCCACGGAAACCCTCCGAGAATTCTGGGGGCCGTGGGGCCGCCCAGCTCAGTCCGGAGCTCCGGAACTCGGGGAAGAGCGTCCGGGAGCCGGGTCTGGGTTCCGCACTCCGTCCGCCCCGATGGCAGAGAGTGAGATACGGACGCCCCGGGACGAGGGGCTCAGGACCCGGCTACGGACACCTGCCTCCATCTCCCTC|CAGATAACACAAGTGTGAAGAGAGGGGAGAGCAGCAAAGGCTGAGCTGCGTGTGCCTGGTCCCTTCCAGACTTTCCAGATAACTTTGCCCCACGGAGGACAAGGAAAGCCAAAA	2	0.726362867722553	0.467754455729131	0.435742853891277	N	Y	3.34785034969775	3.05528856676911	3.05528856676911	splitr	321	1	0	0	Y	0.421052631578947	N	N	319	0	ENSG00000139323	ENSG00000227059	+	-	12	12	89920039	133812681	intron	downstream	POC1B	AC226150.2	89813500	133794898	-	-	0	89919570	89933882	+	-	N	1.37665368323918	-	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0	1	6	1.29962004383379	0.480114411097832	1.29962004383379	0.480114411097832	1	2.66666666666667	-	0.60524179975777
78019	TTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAACCACCACCCCATCATACTCTTTCACCCACAGCACCAATCCTACCTCCATCGCTAACCCCACTAAAACACTCACCAAGACCTCAACCCCTGACCCCCATGCCTCAGGATACTCCTCAATAGCCATCGCTGTAGTATATCCAAAGACAACCATCATTCCCCCTAAATAAATTAAAAAAACTATTAAACCCATATAACCTCCCCCAAAATTCAGAATAATAACACACCCGACCACACCGCTAACAATCAATACTAA|CTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCGCCCTCCCATCCCTACGCATCCTTTAC	1	0.000941819737987688	0.526775457519482	0.600084425908804	N	N	3.09503381613712	3.53296011761759	3.09503381613712	splitr	5	2.22044604925031e-16	2.22044604925031e-16	0	N	2.22044604925031e-16	Y	N	19641	58402	ENSG00000198695	ENSG00000198712	-	-	MT	MT	14673	8269	coding	coding	MT-ND6	MT-CO2	14149	7586	-	+	2.22044604925031e-16	14586	7737	+	-	N	-	-	N	SKBR3_13_2_1	6	0	4	2	2	1	N	N	0	0	2	0.827783467410055	0.504947915120133	0.827783467410055	0.504947915120133	2	-	-	0.60524179975777
135408	TACTCCTTGATGAGCTCCTGCTTGCTCATGTTCTGCAGGCTCTCCGTGTGGTACCGCTCGTACGTCTCCGAGAAGTCCCGCTGCAGAAACTCGCTGCCGTCCCCTCCCATCCCATCGCTGCCCCCATCCTCCTCACCCCCTTCTTCCATGAAGTCGTC|ATCCTGCCCGCCATCATCCTAGTCCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATAC	1	0.511211649793655	0.390564714822603	0.421349522516249	N	N	3.20336464741561	3.12804628055249	3.12804628055249	splitr	3	0	0.0227272727272727	0	N	0.0227272727272727	N	N	1158	3	ENSG00000186834	ENSG00000230021	-	-	17	1	43229468	659930	coding	intron	HEXIM1	RP5-857K21.4	43224684	536816	+	-	0.0227272727272727	43227272	568335	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.703615947298547	0.438725237727329	0.703615947298547	0.438725237727329	2	-	0	0.60524179975777
26678	GTGATGCTGCCAGGTGCTGAGTGAGTTTCACTCCCCCACTGGCCAACCGGTCGATATTGGGAGTCCTGATAGTTTTGTTCCCATAGCACCCAGGATCTCCAATGCCGAGGTCGTCAGCCATCACCAGGATGATGTTCGGCCTTGATGCTGCGTGGCTCTCGGCTTCCCACAGAAAGAACAGTAGGAGGAAAGGGATCTTCATCTTC|GCTATGAACAGCTGAAGACGATCTTGCGCCATTGTCCTCAGGAAGATCTTAACTTACTGAGATGACTGTGTGCAGGTTCAGCAACTGAGGGGCTCTTAGTAGAGTCAAACCAAGGG	2	1	0.686645868634774	0.871265487878886	Y	Y	3.32423818963975	3.79143651356762	3.32423818963975	splitr	322	1	0	0	Y	1	N	N	97	0	ENSG00000101846	ENSG00000256996	-	+	X	X	7272851	7116648	coding	upstream	STS	AC073583.1	7137497	7109925	+	+	0	7171237	7109049	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	4	1.43206539861939	0.869172640780558	1.43206539861939	0.869172640780558	4	-	-	0.60524179975777
84829	GGAGGTGGTGGGGACGGCGTCATCCCGCTGGAGGAGCTCAGCTCTGGGATGATGTGGTGGCTGGTGGTCAACCGTCCGCCGCAGGGGGTGGCCATGAAGATGGAGTCGCCGGTGCGGGGTGGGTGCTGCGGGCGCTGCTGTTCCGA|TGGTGTCTTTGCTGAGGGTCACATTGAGCTGCAGGTTGAATCCGGGGTGCCTTTAGGATTCAGCACCATGGCGGAAGACATGGAGACCAAAATCAAGAACTACAAGACCGCCCCTTTTGACAGCCGCTTCCCCAACCAGAACCAGACTAGAAA	4	1	0.465528157851362	0.810283835747011	N	N	2.90356198562522	3.4006201314963	2.90356198562522	splitr	16	0.0342465753424658	0.0342465753424658	0	N	0.0616438356164384	N	N	83603	3584	ENSG00000130600	ENSG00000126267	-	-	11	19	2022700	36149686	intron	utr5p	H19	COX6B1	2016406	36139125	-	+	0.0273972602739726	2016976	36139250	+	-	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	4	0.985062326217965	1.29962004383379	1.29962004383379	0.985062326217965	1	-	-	0.60524179975777
139872	AGCATTCACGGGGGCTCCGGCGGCCGCGGCGTATCCGTGTCCTCCGCCCGCTTTGTGTCCTCGTCCTCCTCGGGGGCCTACGGCGGCGGCTACGGCGGCGTCCTGACCGCGTCCGACGGGCTGCTGGCGGGCAACGAGAAGCTAACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGCGGCCAACGGCGAGCTAGAGGTGAAGATCCGCGACTGGTACCAGAAGCAGGGGCCTGG|GCCCTCCAGCAGCTTCCTGTAGGTGGCGATCTCGATGTCCAGGGCCAGCTTGACGTTCATCAGCTCCTGGTACTCACGCAGCTGCCGTGCCATGTCCTGCTTGGCCCGCTGCAGGGCAGCCTCCA	1	0.00266353549479846	0.447538936456759	0.5	N	N	3.67593181695901	3.61464054707278	3.61464054707278	splitr	7	0.0559999999999999	0.0559999999999999	0	N	0.0559999999999999	N	N	58670	1367	ENSG00000171345	ENSG00000198363	+	+	17	8	39684560	62627199	coding	intron	KRT19	ASPH	39679869	62413115	-	-	0.0559999999999999	39684135	62491969	-	+	Y	-	1.15755270340056	N	SKBR3_13_2_1	11	0	8.5	6	2	1	N	N	0	0	2	0.827783467410055	0.504947915120133	0.827783467410055	0.504947915120133	2	-	22.5	0.60524179975777
138590	CCCTACTCCTGCCGCTTCTGCTGCTGCCTGTGGCTGGAGGGTCCCCCTGGGGCTGAATCTTTGGGACTTGACCCCGTTCCCTCCCCCTTCCCTCACTCCCCAGCCGGGCGGGAGCATTTATTCCCCAGATTAATTCCCCTTTTGGGGGGGGGCGGGTGTGTGTGTGTGTGTGT|GTGTGTGTGTGTGTGTGTGTGTGTGTTGAGGGCAGCGGGGAGATGCTGGCGAAGGGTC	5	0.547013857249903	0.934930712933681	0.744012660474033	N	N	2.40281264105205	2.32291184420696	2.32291184420696	splitr	32	0.241379310344828	0.241379310344828	0	N	0.396551724137931	N	N	3680	1186	ENSG00000082898	ENSG00000144791	+	+	2	3	61765761	45727830	utr5p	utr5p	XPO1	LIMD1	61704984	45596886	-	+	0.241379310344828	61764902	45636296	-	+	Y	-	-	N	SKBR3_13_2_1	31	0.807017543859649	25	19	2	1	N	N	0.124293785310734	0.807017543859649	2	0.827783467410055	0.471836576423731	0.827783467410055	0.471836576423731	3	-	-	0.60524179975777
129286	CAGGAGTCCGAGGAGGTTAGTTGTGGCAATAAAAATGATTAAGGATACTAGTATAAGAGATCAGGTTCGTCCCTTAGTGTTGTGTATGGCTATCATTTGTTTTGAGGTTAGTTGGATTAGTCATTGTTGGGTGGTAATTAGTCGGTTGTTGATGAGATATTTGGAGGTGGGGATCAATAGAGGGGGAAATAGAATGATCAGTACTGCGGCGGGTAGGCCTAGGATTGTGGGGGCAATGAATGAAGTGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTTTGTTATAGTTTT|TTACTCTTTTTTTTTTTCTCCCCCATCATACAGGTGAATATGACCATCTCCCAGAACAGGCCTTCTATATGGTGGGACCCATTGAAGAAGCTGTGGCAAAAGCTGATAAGCTGGCTGAAGAGCATTCATCGTGAGGGGTCTTTGTCCTCTGTACTGTCTCTCTCCTTGCCCCTAACCCAAA	2	4.30448048663432e-06	0.170189729447764	0.209300629116717	N	N	2.87486837220109	3.14368066642593	2.87486837220109	splitr	11	0.0441988950276242	0	0	N	0.0607734806629836	N	N	3	26155	ENSG00000230021	ENSG00000110955	-	+	1	12	659930	57039852	intron	intron	RP5-857K21.4	ATP5B	536816	57031963	-	-	0.0441988950276242	569048	57032240	-	+	Y	0.828962371721779	1.00738658479551	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.827783467410055	0.513225749794234	0.827783467410055	0.513225749794234	2	0	1427	0.60524179975777
28698	GGGCCATCTACAGTCTTCTGGATGGCAGTGACGGCAAGGACTGTGGTCATGAGTCCTTCCACGATACCAAAGTTATCATGGATGACCTTGGCCAG|GGGTGCTAAGCAGTTGGTGGTGCAGGAGGTATTGCTGACAATCTTGAGGCTGTTGTCATACTTCTCATAGTTCACGCCCATCACAAACACGGGGTCATCACTAGAGGCGGCAGAGATGATGACCTTTTTGGCTCCCCCTGCAAATGAGCCCCAGCCTTCTCCATGGCGG	3	1	0.082794951644286	0.097272422544775	N	Y	3.79040344379773	3.41952156054875	3.41952156054875	splitr	264	0.736842105263158	0.8	1	N	0.810526315789474	N	N	0	0	ENSG00000233876	ENSG00000236993	-	-	7	10	9655615	57428110	intron	intron	GAPDHP68	GAPDHP21	9654608	57427101	+	-	0.8	9655086	57427635	-	-	Y	1	1	N	SKBR3_13_2_1	8	0	5.5	3	2	1	N	N	0	0	2	0.422169568379128	0.827783467410055	0.827783467410055	0.422169568379128	2	0	0	0.60524179975777
49017	GGGTGGAGCTGTCCCAGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCA|TGTGAACAGCAGTTGAACATGGGTCAGTTGGTCCTGAGAGATGGGTGAGTGCCATTCCGAAAGGACCTGCA	586	0.0507550826486564	0.0762059067128363	0.337672422510215	N	N	3.43681151080804	3.49015970162987	3.43681151080804	splitr	0	0.225352112676056	0	0.857142857142857	N	0.816901408450704	N	N	0	0	ENSG00000251948	ENSG00000244466	-	+	19	17	24184165	55868752	intron	intron	AC092279.1	AC015845.1	24184075	55868619	-	-	0.633802816901408	24184079	55868752	-	+	Y	1	1	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	0.890909090909091	7	0.620837600557541	0.45528090707553	0.620837600557541	0.45528090707553	4	0	0	0.60524179975777
125397	TCAGGCCCATCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCT|CCAGCACCCCCTCTCCTGGAGGGCGCCCAGCAGCCTGCCAGCAGTTACTGTGAATGTTCCCCACCGCTGAGAGGCTGCCTCCGCA	2	1	0.196734923242299	0.258789252325421	N	N	3.5246463161926	2.97995327505158	2.97995327505158	splitr	10	0.117647058823529	0.117647058823529	0	N	0.129411764705883	N	N	83603	1482	ENSG00000130600	ENSG00000179348	-	+	11	3	2022700	128212028	intron	utr3p	H19	GATA2	2016406	128198270	-	-	0.117647058823529	2018979	128199753	+	+	Y	-	1.59534395111866	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.521503584468335	0.827783467410055	0.827783467410055	0.521503584468335	2	-	56.5	0.60524179975777
116991	CTACCTACCTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCAAAACCA|ACCCGGACGAGGGCCCTGCACCTAGAAGAAGGTGTTGGGCCTCTTGGTGGTGAAGCGTGGCTTGTGCTGACGGCGCAGGACCCGGTGGGGCAGCGGGAACTTGATCTTGGAGTCGTGGAACTGCTTGACAGCCGGCCGGCGGCACTTGCTGGCCGCGATCTCCTCCACCTTCATGATCTGAATGGAGTGGGCTCGGGCGCGGTGCCGGGCACC	7	2.78259438201356e-07	0.128993496081465	0.331521758935845	N	N	3.50472116494007	3.43511609362884	3.43511609362884	splitr	6	0.0281690140845069	0	0	N	0.0281690140845069	N	N	0	0	ENSG00000212932	ENSG00000213442	+	+	21	12	48111157	104659669	upstream	intron	RPL23AP4	RP11-818F20.1	48110676	104659056	+	+	0.0281690140845069	9827239	104659638	+	+	Y	-	1	N	SKBR3_13_2_1	5	1	4	3	2	1	N	N	1	0	2	0.471836576423731	0.554614923164737	0.554614923164737	0.471836576423731	3	-	0	0.60524179975777
141498	CATGGCCTTCCGTGTCCCCACTGCCAACGTGTCAGTGGTGGACCTGACCTGCCGTCTAGAAAAACCTGCCAAATATGATGACATC|AAGAAGGTGGCTCCTGTCGTGAAGAAGCAGGAGGCCAAGGAAGTGGTGAATCCCCTGTTTGAGAAAAGGCCTAAGAATTTTGGCATTGGACAGGACATCCAGCCCAAAAGAG	1	0.606132694473333	0.311204357582937	0.306030290211129	N	N	3.48743121468078	3.41013483656052	3.41013483656052	splitr	10	2.22044604925031e-16	0	0	N	0.0352941176470588	N	N	20857	71	ENSG00000256901	ENSG00000136653	+	-	12	1	6647316	206762616	coding	intron	AC006064.3	RASSF5	6645876	206680879	-	+	2.22044604925031e-16	6646998	206702275	+	-	Y	1.28786328453218	0.672133182993141	N	SKBR3_13_2_1	81	0	55.5	30	2	1	N	N	0	0	2	0.662226773928044	0.728449451320848	0.728449451320848	0.662226773928044	1	2364	0.5	0.60524179975777
128890	GCAGCAGCTGGCACCTTATTGGCCAGCAACATGTCCCTGATCTCAGTGAGGTCCTCCTTGGTGAACACAAAGCCCACATTCCCCCGGATATGAGGCAGCAGTTTCTCCAGAGCTGGGTTGTTTTCCAG|GTGGCAGCTGCTGCCCCAGCCACAGCTGCACTGACTGTGCTCACCACACATCTGGGGCAGCCTTCCCTGGCAGGGGCCCTCGTGGCTTCTCATTTTCCATTCCCTTCACTGTGGCTAAGGGGTGGGGTGAGGGGATGGAGAGGGAG	3	1	0.130715914556096	0.197936974829114	N	N	3.37808089400154	3.01820144633329	3.01820144633329	splitr	3	0	0	0	N	0.0703125000000001	N	N	15683	10309	ENSG00000089157	ENSG00000158710	-	+	12	1	120639014	159895522	coding	utr3p	RPLP0	TAGLN2	120634510	159887897	-	-	0	120637138	159888119	+	+	Y	-	1.31182505150614	N	SKBR3_13_2_1	12	0	7.33333333333333	4	3	1	N	N	0	0	3	1.15061901969998	0.521503584468335	1.15061901969998	0.521503584468335	3	-	522.333333333333	0.60524179975777
96661	GACTTGGGAGAGGACTGGGCCATTCTCCTTAGAGAGAAGTGGGGTGGCTTTTAGGATGGCAAGGGACTTCCTGTAACAACGCATCTCATATTTGGAATGACTATTAAAAAAACAACAATGTGCAATCAAAGTCCTCGGCCACATTGTGAACTTTGGGGGATGCTCGCTCCAACCGACTGCTGTCACCTTCACCGTTCCAGTTTTTAAATCCTGAGTCAAG|CCAAAAAAAAAAAAAAAAAACCTTTGCATGAAGAGATAAAAACGGC	2	1	0.572228613671423	0.790699370883283	N	N	3.43358851031899	2.57610330871363	2.57610330871363	splitr	27	0.391304347826087	0.391304347826087	0.25	N	0.543478260869565	Y	N	30285	0	ENSG00000075624	ENSG00000198286	-	-	7	7	5603415	3083579	utr3p	intron	ACTB	CARD11	5566782	2945775	-	-	0.391304347826087	5567252	3012229	+	-	N	-	1	N	SKBR3_13_2_1	99	0	50	22	4	1	N	N	0	0	4	1.32445354785609	0.422169568379128	1.32445354785609	0.422169568379128	2	-	0	0.60524179975777
141723	ACAACTCCAACCAGTGCAAATGACTTAGTGCAAATTAAATTCAGAAGGGACGGGGGAAACAGAGTCGTGGAGGCTTTGAATCTCTCAGAAAAAAGGAAAGACAGGAAAGCTCAGAAACAAAGAGACAGAAGGATGAAAAAGA|AGAAGAAGAAGAAGAAGACAGGTCGGGCTAAGCGGCGGATGCAGTACAACCGGCGCTTTGTCAACGTTGTGCCCACCTTTGGCAAGAAGAAGGGCCCCAATGCCAACTCTTAAGTCT	1	1	0.447538936456759	0.5	N	N	2.75484648550836	3.18395512445406	2.75484648550836	splitr	6	0.0512820512820512	0.0512820512820512	0	N	0.102564102564103	N	N	83603	3863	ENSG00000130600	ENSG00000149806	-	+	11	11	2022700	64889945	intron	coding	H19	FAU	2016406	64888100	-	-	0.0512820512820512	2016823	64888265	+	+	N	-	3.99190954309936	Y	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.538059253816536	0.422169568379128	0.538059253816536	0.422169568379128	1	-	865	0.60524179975777
128241	TCCGTACGCCACATTTCCCGCGCCCCACCGCGGGGCGGGGATTCGGCGCTGGGCTCTTCCCTGTTCACTCGCCATTACTGAGGGAATCCTGGTTAGTTTCTTTTCCTCCGCTGACAAATATGCTTAAATTCAGCGGGTCGCCACGTCTGATCTGAGGTCGC|GTGCTCAGCTACTTCTCCTGCACTTTGAAAGACCCCTCCCACTCCTGGCCTCACATTTCTCTGTGTGATCCCCCACTTCTGGGCTCTGCCACCCCACAGTGGGAAAGGCCACCCTAGAAAGAAGTCCGCTGGCACCCATAGGAAGGGGCCTCA	3	0.136639609660844	0.204269397646567	0.357980465865342	N	N	3.70360170818306	3.25828027434064	3.25828027434064	splitr	0	0.176470588235294	0	0	N	0	N	N	0	485	ENSG00000141161	ENSG00000170442	+	+	17	12	33516364	52702947	intron	intron	UNC45B	KRT86	33474836	52643084	+	+	0.176470588235294	33478274	52679956	+	+	Y	1	0.0413504111321948	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	0	2	0.794672128713653	0.438725237727329	0.794672128713653	0.438725237727329	2	0	0	0.60524179975777
104532	TCTGTAAAAATCTCAAAGGTTCTTTTTTCACTGACCCGGTGAGGTGGGTGGGGCGAGCCCCGAGGGG|ACAGTGCCAGGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCA	11	0.863350661365274	0.349235110327986	0.32724503182731	N	N	3.1034010507246	3.25360004855864	3.1034010507246	splitr	4	0.0597014925373133	0	0.4	N	0.626865671641791	N	N	0	0	ENSG00000253128	ENSG00000162669	+	+	14	1	107281252	91870426	downstream	intron	IGHV4-80	HFM1	107281000	91726323	-	-	0.0895522388059703	43723040	91853141	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.2	1	1	1	N	N	0.892857142857143	1	5	0.463558741749631	1.23339736644098	1.23339736644098	0.463558741749631	2	-	0	0.60524179975777
7122	CTCGGATGCTGGCTTCAATCGGCTTCCCTGTGGTCTTCAGATACTCATCGAACACCAACCGAAGATGCTGCTTGCTGCGATTTCCCAAGATGTAAATGAACTGGGCTTCATCTGTTCCCCATTTCAG|ACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCTATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAGCGCCACACTAGCAATATCAACTATTAACCTTCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTGAC	1	0.00436344271765238	0.254583648908217	0.223418152789081	N	N	3.50575423470996	3.26464233693271	3.26464233693271	splitr	0	0	0	0	N	0.0314960629921262	N	N	7377	3	ENSG00000197043	ENSG00000230021	-	-	5	1	150537443	659930	coding	intron	ANXA6	RP5-857K21.4	150480273	536816	-	-	0	150512727	569354	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	0	0.60524179975777
134071	GCATTGGAACTACCACTTTCGGATCCACTCTCAGTGCCTACACCCCGAAAGGGCCTGAAGAAGAGAAACACTCGCAGAAAATGGCTCTCGGCAGCCACAGCACGGGTCCGACACAGCGCCGC|CATGACTTCCTACAGCTATCGCCAGTCGTCGGCCACGT	1	0.0599278659684344	0.899266171301115	0.897571427984624	N	N	3.20653421474217	3.75609018966091	3.20653421474217	splitr	12	0.236842105263158	0.236842105263158	0	N	0.263157894736842	N	N	1344	58670	ENSG00000147586	ENSG00000171345	-	+	8	17	80942524	39684560	coding	utr5p	MRPS28	KRT19	80830952	39679869	-	-	0.236842105263158	80942480	39684500	+	+	Y	-	0.910313960065118	N	SKBR3_13_2_1	2	0	1.66666666666667	1	2	1	N	N	0	0	3	1.08439634230717	0.596004096535239	1.08439634230717	0.596004096535239	2	-	1636	0.60524179975777
138558	TAAATAAAACAAGCCTGTTTTTGATCTTCCATCAAAAAAAAAAAAAAA|AAATGCAGCTCCATACATTTCCAGTTTAGTCACACTCTGCTAGGACAGATGGAGTAGCCAATGCCAAGAACTTCGCCGGATGGGGCTGCTTCAGCAGATTTTAAAAAAGAAT	1	0.19148986645833	0.800133926999915	0.844771979185218	N	N	2.8794206169071	3.41000685548453	2.8794206169071	splitr	31	0	0.520833333333333	0	N	0.520833333333333	N	N	756	779	ENSG00000077044	ENSG00000104369	+	+	2	8	234380750	75233563	downstream	utr3p	DGKD	JPH1	234263153	75146935	+	-	0.520833333333333	234380761	75148906	+	-	Y	-	-	N	SKBR3_13_2_1	30	0	20.5	11	2	1	N	N	0	0	2	0.413891733705027	0.521503584468335	0.521503584468335	0.413891733705027	3	-	-	0.60524179975777
72145	AAGCCACCACGGTCACTTCCGCCCATGCCACCTCTGCCTCCACGGCCACCTCCACGACCTCTGGGTTCATAGCCACCACTGCTGCGGTTGTAACCACCACCGCCGCCGCCGCCGCCGCCACCACTGCCACCCCTGCCGCGGCCTCCACGGTCCTGCTGTCCATAGCCACCGCTGCCACCTCCACCACTCTGGTCTTGATTGCCATAACCGCCACCACTGCCACCACCACTACTCATGGAGGATTGATCTTGGCCATAGTTACCTCCACCTCCACCTCCA|CCCCCACCCCCACCCCCCACCACTACCCTTCTGAGCCTCTGATAAACATCC	1	0.0399244926739318	0.390564714822603	0.421349522516249	N	N	3.59524460448036	2.63318741297038	2.63318741297038	splitr	13	0	0.215686274509804	0	N	0.215686274509804	N	N	4330	0	ENSG00000089280	ENSG00000101425	-	+	16	20	31203127	36965907	coding	intron	FUS	BPI	31191445	36888551	+	+	0	31195701	36895414	-	+	Y	-	1	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0	1	2	0.538059253816536	0.413891733705027	0.538059253816536	0.413891733705027	2	-	0	0.60524179975777
77935	AGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCAGAAGTTGCAGGCAGCCAAACTCGGGCCACCGCACTCCACCCTGGATGACAGAGTAAGACTTGGTCTCTAAATAAATAAATAAATAGAAGGTAGGTGCTTTGCTTCAGCAGCACATATACTGCTAAATTGGAACAACAAAGAGATGATTAGCGTGGCCCCTGTGCAAGCGTGATACGAAAATTGTGAAATGTTCCTTTG|CAAAAAAAAAAAAAAAAAAAAAAAATTTTGCCAGGATTGGTGGTGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGACA	1	1	0.209527803558926	0.160545729398276	N	Y	3.44508545943967	2.22901083072983	2.22901083072983	splitr	333	0.931034482758621	0.275862068965517	1	N	0.252873563218391	N	N	1168	5007	ENSG00000182841	ENSG00000008838	+	-	22	17	42978044	38210661	intron	intron	RP1-222E13.10	MED24	42951229	38175350	-	-	0	42965152	38207389	-	-	Y	-	1.49798659501006	N	SKBR3_13_2_1	1224	0.690355329949239	628.5	33	2	1	N	N	0.690355329949239	0.614906832298137	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	132.5	0.60524179975777
100266	GTGTGGCGCTTCCAATTAGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGGTTAGGCGTACGGCCAGGGCTATTGGTTGAATGAGTAGGCTGATGGTTTCG|CTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGTGCGTCACTAATTAGATGACAAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGTGCTTCATTGAATTTCTTCACTTTGACAT	2	1	0.294240693901846	0.435742853891277	N	N	3.58490451630894	3.6035982586987	3.58490451630894	splitr	14	0.125	0	0	N	0.115384615384615	N	N	3	356	ENSG00000230021	ENSG00000149262	-	+	1	11	659930	77705724	intron	intron	RP5-857K21.4	INTS4	536816	77589766	-	-	0.125	569507	77597675	-	+	Y	0.828962371721779	1.69881089015784	N	SKBR3_13_2_1	15	1	10.3333333333333	6	3	1	N	N	0	1	3	0.860894806106457	0.720171616646748	0.860894806106457	0.720171616646748	2	0	5	0.60524179975777
139856	AAGGGAGCTAGGTGAAGGGCAGGGGCTCCCCGACAGATTGAGGGGGTGGGGAAAACCAAAATAAAACGTCAAATAAATTGTGTAGGAGGAGTCCAGCTTAGGACCGGGCCAGAGCCAGGCCAGGCTCGGGGAGGGGGCCTCTGCAGG|GAAGGGTACAGCCAATGCCCGAATGCCAGAGAAGGTCACATGGATGAGGAGAATGACGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACACGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAGACAA	1	0.40435948873096	0.375556752806067	0.399915574091196	N	N	2.94483481830309	3.50848272165904	2.94483481830309	splitr	1	0	0	0	N	0	N	N	7326	0	ENSG00000132507	ENSG00000218227	-	-	17	5	7215782	177483195	utr3p	intron	EIF5A	RP11-889L3.1	7210318	177482605	+	+	0	7215173	177482847	-	-	Y	-	1	N	SKBR3_13_2_1	33	0	19.5	6	2	1	N	N	0	0	2	0.45528090707553	0.827783467410055	0.827783467410055	0.45528090707553	1	-	0	0.60524179975777
141345	TGTAATTGCCAGTTGAGAATTGAGCCTTTGGATTTTTTTTTTTTTTAACT|TTGGCACATTGATCTATCTAAACCTGGTGGGGAGAATTATCCCCACATTGTCTCATGGAAAGACTCAACTTGCAACTGTGCCCTCCACACTATCCTTACTTCTGTCTCCACTCTGATACCAGAGTGCAGCCATGCAGATGGTTATTCCAGCTCTGGTCACCCGACTCCTTTCACCAAATTGCTCCTAACTGGAAGATCTCACTTTCCCCTTGTGGGGTAGGAACCGATGCCAGTGGGAGGGATGTGCCCCTGACCATTA	1	0.183780521665093	0.947341838102727	0.917599595447558	N	Y	2.88214910385619	3.61360747730288	2.88214910385619	splitr	28	0.48	0.48	0.5	N	0.48	N	N	1	1435	ENSG00000237838	ENSG00000100216	+	-	3	22	25215796	39080818	intron	utr3p	AC133680.1	TOMM22	24729410	39077953	+	+	0.48	25002269	39079940	+	-	Y	0.947179589396054	0.797905694749435	N	SKBR3_13_2_1	2	0	1.5	1	1	1	N	N	0	0	2	0.422169568379128	0.637393269905742	0.637393269905742	0.422169568379128	2	0.5	70.5	0.60524179975777
80748	TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTT|GACTCAGGATTTAAAAACTGGAACGGTGAAGGTGACAGCAGTCGGTTGGAGCGAGCATCCCCCAAAGTTCACAATGTGGCCGAGGACTTTGATTGCACATTGTTGTTTTTTTAATAGTCATTCCAAATATGAGATGCGTTGTTACAGGAAGT	3	0.660087552081805	0.903767212031958	0.955249021598247	N	N	1.05692817407712	3.49744043328497	1.05692817407712	splitr	0	0.557692307692307	0.557692307692307	1	N	1	N	N	0	30285	ENSG00000211864	ENSG00000075624	-	-	14	7	22987849	5603415	intron	utr3p	AE000662.21	ACTB	22987790	5566782	+	-	0.557692307692307	22987843	5567249	-	+	Y	-	-	N	SKBR3_13_2_1	96	0	71	46	2	1	N	N	0	0	2	0.413891733705027	0.827783467410055	0.827783467410055	0.413891733705027	2	-	-	0.60524179975777
104071	ATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTATTC|TTTACCTTTCACTTCATCTTGCCCTTCATTATTGCAGCCCTAGCAACACTCCACCTCCTATTCTTGCACGAAACGGGATCAAACAACCCCCTAGGAATCACCTCCCATTCCGATAAAATCACCTTCCACCCTTACTACACAATCAAAGACGCCCTCGGCTTACTTCTCTTCCTTCTCTCCTTAATGACATTAACACTATTCTCACCAGACCTCCTAGG	1	0.347214591588854	0.12875022366714	0.0640797573534845	N	Y	3.67952553980864	3.10443412049449	3.10443412049449	splitr	330	1	0.0357142857142857	0	Y	0.125	N	N	121749	37049	ENSG00000198804	ENSG00000198727	+	-	MT	MT	7445	15887	coding	coding	MT-CO1	MT-CYB	5904	14747	+	+	0	6015	15281	+	-	N	-	-	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.471836576423731	0.827783467410055	0.827783467410055	0.471836576423731	1	-	-	0.60524179975777
30561	TGTATCTTTTAGTTGGATTGGCATATGGCTCAAAGCGATTGCCTCCTCTTTTTATGTTTTTCTCCTTCCTCTTCTCATTCTGAGCAGGTCGTTCTCCTTCACCCTTAGGGCCCGGAGCCCCGTTGCCGCTCGGCACGCCGGGCGCGCCGCTCTCTTCCTCCATTTTGATCTCCGTCGCCGCCACCTCCGCCGCCGC|CGGAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCTCATCCTACCAGGCTTCGGAATAAT	2	1	0.294240693901846	0.435742853891277	N	N	3.14953886790822	3.60785432895764	3.14953886790822	splitr	4	0	0	0	N	0.032258064516129	N	N	3454	0	ENSG00000099783	ENSG00000237973	-	-	19	1	8553885	567996	coding	intron	HNRNPM	RP5-857K21.6	8509651	566454	+	+	0	8509901	567122	-	-	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.819505632735954	0.827783467410055	0.819505632735954	2	-	0	0.60524179975777
141246	GGTCTTTTGGATGGTTTGCATGGAGTTGCTGCTGTCCAAGGCATCACCAAGATTAAAGTCCTCGCCATCTTCCAGCAGGCGGCGGTAG|TTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCCTAGTTGGATCTTGGGAGCGGGCGGGC	1	0.202771646894377	0.163782765099475	0.102428735043176	N	N	3.64656650855576	3.54400240599166	3.54400240599166	splitr	30	0	0	0.5	N	0.0945945945945947	N	N	31732	1	ENSG00000111057	ENSG00000256642	-	-	12	16	53346684	33962503	coding	upstream	KRT18	NCRNA00273	53342655	33961052	+	-	0.0675675675675675	53346091	33963128	-	-	Y	-	-	N	SKBR3_13_2_1	2	1	1.5	1	1	2	N	N	0	1	2	0.480114411097832	0.629115435231642	0.629115435231642	0.480114411097832	3	-	-	0.60524179975777
9400	GCTGGAGACCTGGCCTCGTCTCCAGCCCGAACGCTGAGGCACCGATCCCGGCTCCGTCGCCGCCCGCGAGGCCCGCCTTGGCCACGGGCTCTGGAGGCCAGTGCCTCCCGCTCGCCGCCCGCTGCGCTCCTCACCCCTGCCTGCACC|TACCTCCCTCACCAAAGCCCATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACT	2	1	0.0528227949490863	0.0261143544820491	N	N	2.74181260550801	2.79108195041277	2.74181260550801	splitr	14	0.0272108843537415	0	0	N	0.0476190476190478	N	N	83603	3	ENSG00000130600	ENSG00000230021	-	-	11	1	2022700	659930	intron	intron	H19	RP5-857K21.4	2016406	536816	-	-	0.0272108843537415	2017881	569018	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	4	0	3.16666666666667	2	6	7	N	N	0	0	6	1.38239839057479	1.29134220915969	1.38239839057479	1.29134220915969	3	-	0	0.60524179975777
141375	CTCCTCGTTGCGGTTGATGAGCAGGAAGCGGGGACTCTCGGGGCAGAAGGGCAGCACGATGCACTGCAGCAGGGCCGGGATGAAGATGATG|ACGATGATGATGAAGAGGATGATGATGAAGATGATGATGATGATGATTTTGATGATGAGGAAGCTGAAGAAAAAGCGCCAGTGAAGAAATCTATACGAGATACTCCAGCCAAAAATGCACAAAAGTCAAATCAGAATGGAAAAGACTCAAAACCATCAACA	2	1	0.231619174474302	0.323771392476512	N	N	3.25952103077323	2.41567776081201	2.41567776081201	splitr	28	0.142857142857143	0.131868131868132	0	N	0.142857142857143	N	N	5258	108	ENSG00000117394	ENSG00000113391	+	+	1	5	43424539	93447404	coding	intron	SLC2A1	FAM172A	43391519	92953775	-	-	0.142857142857143	43395650	93018931	+	+	Y	1.55135885731298	0.998229746013441	N	SKBR3_13_2_1	20	0.0373831775700935	15.3333333333333	7	3	1	N	N	0	0.0373831775700935	3	0.662226773928044	0.885728310128759	0.885728310128759	0.662226773928044	2	133	2	0.60524179975777
141441	GAGGATCGCTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAACGGAGCAGGTCAAAACTCCCGTGCTGATCAG|TAGTGGGATCGCGCCTGTGAATAGCCACTGCCCTCCAGCCTGGGCAACAGCCAGACC	2	1	0.238534101605131	0.336508538426427	N	Y	3.5319270478477	3.61104682422314	3.5319270478477	splitr	235	0.842105263157894	0	0	N	0.894736842105263	N	N	0	57	ENSG00000153707	ENSG00000204947	+	+	9	7	10612723	148823438	intron	intron	PTPRD	ZNF425	8314246	148799876	-	-	0.842105263157894	9442291	148822847	+	+	Y	1	1.26788943929482	N	SKBR3_13_2_1	110	1	59	8	2	1	N	N	1	1	2	0.827783467410055	0.546337088490636	0.827783467410055	0.546337088490636	1	0	2	0.60524179975777
132446	AGCTGGTGGGCACGTCCACCCCAGCTGGAGACCTGGCCTCGTCTCCAGCCCGAACGCTGAGGCACCGATCCCGGCTCCGTCGCCGCCCGCGAGGCCCGCCTTGGCCACGGGCTCTGGAGGCCAGTGCCTCCCGCTCGCCGCCCGCTGCGCTCCTCACCCCTGCCTGCACCATCCTCCCTCCT|TAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACACTACTCCCTATATCTAACAACGTAAAAATAAAATGACAGTTTGAACACACAAAA	1	1	0.704121951840997	0.776581847210919	N	N	2.84181605499237	3.20930255448461	2.84181605499237	splitr	16	1.11022302462516e-16	1.11022302462516e-16	0	N	0.01	N	N	83603	0	ENSG00000130600	ENSG00000225630	-	-	11	1	2022700	566063	intron	intron	H19	RP5-857K21.8	2016406	565020	-	+	1.11022302462516e-16	2017893	565883	+	-	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.620837600557541	0.827783467410055	0.620837600557541	2	-	0	0.60524179975777
109588	AGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACCTCCATCATCACCTCAACCCAAAAAGGCATAATTAAACTTTACTTCCTCTCTTTCTTCTTCCCACTCATCCTAACCCTACTCCTAATCACATAAAAAAAAAAAAAAAAAA|TAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCC	3	1	0.0697481096246482	0.0727719375675796	N	N	2.35265208355625	2.94806716636195	2.35265208355625	splitr	12	0	0.0895522388059703	0	N	2.22044604925031e-16	Y	N	54817	3466	ENSG00000198786	ENSG00000228253	+	-	MT	MT	14148	8572	downstream	coding	MT-ND5	J01415.25	12337	8366	+	+	0	14164	8496	+	-	N	-	-	N	SKBR3_13_2_1	6	0	4	2	3	4	Y	N	0	0	3	0.844339136758256	0.728449451320848	0.844339136758256	0.728449451320848	3	-	-	0.60524179975777
100215	TGAATGAGTAGGCTGATGGTTTCGATAATAACTAGTATAGGGATAAGGGGTGTAGGTGTGCCTTGTGGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAAAGCCTATAATCACTGCGCCCGCTCATAAGGGGATGGCCATGGCTAGGTTTATAGATAGTTGGGTGGTTGGTGTAAATGAGTGAGGCAGGAGTCCGAGGAGGTTAGTTGTGGC|CATGGTAATCCTGCTCAGTACGAGAGGAACCGCAGGTTCAGACATTTTGTGTATGTGCTTGGCTTTGTTGGCCTTGGATAGGCGGT	1	0.557748642223252	0.526775457519482	0.600084425908804	N	N	3.39397124202697	3.92592657761471	3.39397124202697	splitr	1	0	0	1	N	0.116279069767442	N	N	3	0	ENSG00000230021	ENSG00000243092	-	+	1	12	659930	34372611	intron	upstream	RP5-857K21.4	AC140847.1	536816	34372314	-	-	0	569313	34372671	-	+	Y	0.828962371721779	-	N	SKBR3_13_2_1	3	1	2.5	2	2	2	N	N	0	1	2	0.827783467410055	0.463558741749631	0.827783467410055	0.463558741749631	3	0	-	0.60524179975777
137359	TACCAAATCCATTATAGCCATCCCCACTGCCACCATATCCACCACCACCATGGCTGCCACCAAAGCCACCACGACCACTGAAGTTTCCTCCACGACCGAAGTTGTCATTCCCACCGAAACCACCTCCACGACCACCACCAAAGTTTCCA|TCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATGACATTCACAGCCATAGAACTAATCATATTTTATATCTTCTTCGAAA	1	1	0.375556752806067	0.399915574091196	N	N	2.79889189072798	2.82718004376867	2.79889189072798	splitr	1	0	0	0	N	0.0388349514563106	N	N	0	31	ENSG00000197332	ENSG00000132570	+	+	19	5	11797382	134343649	intron	intron	ZNF833P	PCBD2	11750591	134240596	+	+	0	11777249	134263459	+	+	Y	1	1.2575464834446	N	SKBR3_13_2_1	72	1	48.6666666666667	24	3	1	N	N	1	0	3	0.75328295534315	1.15889685437408	1.15889685437408	0.75328295534315	1	0	0.666666666666667	0.60524179975777
136337	TATAGGAACCCAGTAATAATTGAGGGGTGGTGCTGTATCCTGCACGATCCTGATACGGTGGGTGAAGAAGAAGAAAGCCAGGATCCCCACACTACCAACGATCAGAAGTTTGCCCAACAGGAAGAGGAAGTCAGTAACTTTATCCAGGACAGCCACTCTGATGATGTTTCTCATGAGCAGGAAGAAGGCATTCCTGGCCGAGGTGCAGAAATTGGTG|GTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCAGTTGAAGATGGGTCACT	1	0.557748642223252	0.254583648908217	0.223418152789081	N	N	3.57336771439491	3.57808779297027	3.57336771439491	splitr	17	0	0	0	N	0	Y	N	4922	0	ENSG00000129353	ENSG00000251948	-	+	19	19	10755235	24184165	coding	intron	SLC44A2	AC092279.1	10713121	24184075	+	-	0	10748546	24184133	-	+	N	-	1	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.480114411097832	0.430447403053228	0.480114411097832	0.430447403053228	1	-	0	0.60524179975777
129074	CCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATCACC|TTTCCTATTCCCCCGAGCAATCTCAATTACAATATATACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAAAGCCCCCGCACCAATA	1	0.214530041208772	0.612610548302747	0.693969709788871	N	Y	3.04015804200544	3.30488209984069	3.04015804200544	splitr	163	0.96078431372549	1.11022302462516e-16	0	Y	0.11764705882353	N	N	38194	19641	ENSG00000198899	ENSG00000198695	+	+	MT	MT	9207	14673	coding	downstream	MT-ATP6	MT-ND6	8527	14149	+	-	0.0392156862745097	8658	14146	+	-	N	-	-	N	SKBR3_13_2_1	8	0	7	6	2	3	N	N	0	0	2	0.554614923164737	0.596004096535239	0.596004096535239	0.554614923164737	1	-	-	0.60524179975777
82754	AAAGAGGTGATAGATGCCCTCAGAGTGAACAACAACCAGCAGAATGCCGCGTGCGAGTGGCTGCTGGGGGACCGGAAGCCCTCTCCGGAGGAGCTGGACAAGGGCATCGACCCCGACAGTCCTCTCTTTCAGGCCATCCTGGATAACCCGGTGGTGCAGCTGGGCCTGACCAACCCGAAAACATTGC|TAGGTTCGACCTTGAAACTACAAGAGTGAATCTGAAAGTTAGTTCAAAAAGTCAAACGGGTTCACAGCAGCCAAGAGGTGGCGACAACACGAAGCCCATTGG	1	0.802538879556228	0.612610548302747	0.693969709788871	N	Y	3.4780843434859	3.59425138750382	3.4780843434859	splitr	289	1	0.0294117647058822	0	N	1	Y	N	538	0	ENSG00000130560	ENSG00000223256	+	+	9	9	138853226	141150148	coding	upstream	UBAC1	U6.928	138824815	141150045	-	+	0	138830071	138817036	-	+	N	-	-	N	SKBR3_13_2_1	1	0.397260273972603	1	1	0	1	N	N	0	0.397260273972603	2	0.827783467410055	0.60428193120934	0.827783467410055	0.60428193120934	1	-	-	0.60524179975777
88341	ACTCATGGCCTTGTAGTTGAGAACCAGGAGTTAAGACAGCGCTTGGGGATGGATGCCCTGGTTGCTGAAGAGGAGGCGGAAGCCAAGGGGAATGAAGTGAGGCCAGTGGCCGGGTCTGCTGAGTCCGCAGCACTCAGACTACGTGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACCCCTCCAGAACATCTCCCCATGGATTCTGGCGGTATTGACTCTTCAGATTCAGAGTCTGATATCCTGTTGGGCATTCTGGACAACTTGGACCCAGTCATGTTCTTCAAATGCCCTTCCCCAGAG|CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGAT	1	1.27090210039722e-08	0.375556752806067	0.399915574091196	N	N	3.40319013214585	3.55334927718654	3.40319013214585	splitr	8	0.0372093023255813	0.0372093023255813	0	N	0.0372093023255813	N	N	12508	0	ENSG00000100219	ENSG00000212932	+	-	22	21	29196585	48111157	coding	upstream	XBP1	RPL23AP4	29190543	48110676	-	+	0.0372093023255813	29191652	9827017	-	-	Y	-	-	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	0	1	2	0.827783467410055	0.728449451320848	0.827783467410055	0.728449451320848	2	-	-	0.60524179975777
138307	GGTGCGGCTCCCTAGGCCCCTCCCCTCTTCAAGGGGTCTACATGGCAACTGTGAGGAGGGGAGATTCAGTGTGGTGGGGGACTGAGTGTGGCAGG|AGTCCGAGGAGGTTAGTTGTGGCAATAAAAATGATTAAGGATACTAGTATAAGAGATCAGGTTCGTCCCTTAGTGTTGTGTATGGCTATCATTTGTTTTGAGGTTAGTTGGATTAGTCATTGTTGGGTGGTAATTAGTCGGTTGTTGATGAGATATTTGGAGGTGGGGATCAATAGAGGGGGAAATAGAATGATCAGTACT	2	0.40435948873096	0.51863115005231	0.741210747674579	N	N	3.03293074351283	3.49168728493972	3.03293074351283	splitr	13	0.126315789473684	0.0842105263157893	0	N	0.168421052631579	N	N	62936	3	ENSG00000111640	ENSG00000230021	-	+	12	1	6647537	659930	utr3p	intron	GAPDH	RP5-857K21.4	6643093	536816	+	-	0.126315789473684	6647404	569335	-	+	Y	-	0.828962371721779	N	SKBR3_13_2_1	6	0	6	6	2	1	N	N	0	0	2	0.596004096535239	0.430447403053228	0.596004096535239	0.430447403053228	2	-	0	0.60524179975777
137115	TGAGAAGCACCTCCAAAAGGGTTGGCCTTTAGGGCTGTGCCCAAATGAGCTTTCTTATACTGTTTATCATGCCACTTCTGGTCTCGTCGGTGACTACGGAGCTTCCTAGCAGTACGAAGTCCACGACACTTGCCCATCCTGTCGGCGCCACGGGCCTGAGCGAAA|GCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTTGTAATTCCGACCATAAACGATGCC	55	1	0.0268155052810995	0.0858227885669785	N	N	3.52936639476796	3.41679307359967	3.41679307359967	splitr	9	0.0107526881720431	0.0107526881720431	0	N	0.0537634408602149	N	N	9018	1	ENSG00000186468	ENSG00000163046	-	+	5	2	81574396	133015542	utr5p	intron	RPS23	ANKRD30BL	81569177	132905164	-	-	0.0107526881720431	81574170	133012784	+	+	Y	-	0.81549815498155	N	SKBR3_13_2_1	3	1	2.5	2	2	1	N	N	0	1	2	0.413891733705027	0.546337088490636	0.546337088490636	0.413891733705027	2	-	0	0.60524179975777
130904	GCACAGATGAGCACTGAACTGCTGCTGGAAGATGGGTTGTTGTTGTCCCAGAGTCGCCAACGCATTGTCTGCCTCAACTCCCTCAAGGCTAGTGTGCAGGTGACCACCATTGACCTCTCAGCCTCCCTAGTTCTGAACACTTGCATCATTCACTACCGGCACCAGGAATTCTCTCACTGGCTGCACCTGCTAGCACTGGAAACCCAAGGGTCTAGTTCACCTGTT|AAAAAAAAAAGAAAAAAAAGAACCTTCTCCTTCATCTGTCTTGTCCTTTTTAA	1	1	0.899266171301115	0.897571427984624	N	N	3.54193626645188	2.77702434821235	2.77702434821235	splitr	29	0.132075471698113	0.283018867924528	0	N	0.415094339622642	N	N	15262	799	ENSG00000007202	ENSG00000182307	+	+	17	8	26972472	146281416	coding	upstream	KIAA0100	C8orf33	26941459	146277764	-	+	0.132075471698113	26966353	55295497	-	+	Y	-	-	N	SKBR3_13_2_1	7	0	5	3	2	1	N	N	0	0	2	0.827783467410055	0.44700307240143	0.827783467410055	0.44700307240143	2	-	-	0.60524179975777
80624	TGGTCAACCGTCCGCCGCAGGGGGTGGCCATGAAGATGGAGTCGCCGGTGCGGGGTGGGTGCTGCGGGCGCTGCTGTTCCGATGGTGTCTTTGATGTTGGGCTGATGAG|GTCTGGTTAGACCCCAATGAGACCAATGAAATCGCCAATGCCAACTCCCGTCAGCAGATCCGGAAGCTCATCAAAGATGGGCTGATCATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCGGAAAAACACCTT	2	1	1	0.0261143544820491	N	N	3.19912550201108	3.66166652809589	3.19912550201108	splitr	10	0.018348623853211	0.018348623853211	0	N	0.18348623853211	N	N	83603	129759	ENSG00000130600	ENSG00000108298	-	-	11	17	2022700	37360980	intron	coding	H19	RPL19	2016406	37356536	-	+	0.018348623853211	2017003	37357524	+	-	Y	-	-	N	SKBR3_13_2_1	13	0	4.71428571428571	2	7	1	N	N	0	0	7	0.91056181415106	1.08439634230717	1.08439634230717	0.91056181415106	4	-	-	0.60524179975777
55018	CCATCTTCAACTGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCT|CCTCGCCGCTCCTCCCGCGAATCGCAGCTTCTGAGACCAGGGTTGCTCCGTCCGTGCTCCGCCTCGCCATGACTTCCTACAGCTATCGCCAGTCGTCGGCCACGTCGTCCTTCGGAGGCCTGGGCGGCGGCTCCGTGCGTTTTGGGCCGGGGGTCGCCTTTCGCGC	1	1	0.375556752806067	0.399915574091196	N	N	3.47911741325579	3.36634120359627	3.36634120359627	splitr	0	0	0	0	N	0	N	N	0	58670	ENSG00000251948	ENSG00000171345	+	+	19	17	24184165	39684560	intron	upstream	AC092279.1	KRT19	24184075	39679869	-	-	0	24184150	39684567	+	+	Y	1	-	N	SKBR3_13_2_1	2	1	1.66666666666667	1	2	1	N	N	1	0	3	0.562892757838837	0.844339136758256	0.844339136758256	0.562892757838837	2	0	-	0.60524179975777
140196	GAGGATCCCTTGAGCCTGGGAGGTCGAGGCTTCAGTGAACTGTGATTGCACCACTGCACTCCAGCCTGGGTGCCAGACGACGACCCTGTCT|ATAGGCGGACGTTGAGCATCATGGAAGCCACGATGTAGAAGTAGGGGAAGTTGATGCGCAGCCACCAGGCCAGATTGAAGAAGACAGCAGCTTGCGAGTCAGCCCCTTGCGTAAGACTCCACAGGAGCGGGCGGCGGCTGAGCGCTAGAGCCGGACAGCCAGGCGCGACAGAGCCGCCGCCATATAGAGACC	1	1	0.254583648908217	0.223418152789081	N	Y	3.35463656781289	3.76273355257368	3.35463656781289	splitr	283	0.835164835164835	0.021978021978022	0	N	0.021978021978022	N	N	0	0	ENSG00000229435	ENSG00000249385	+	+	7	9	159026067	99893292	upstream	intron	PIP5K1P2	AL445670.1	159024125	99883188	+	-	0	6356726	99883857	+	+	Y	-	1	N	SKBR3_13_2_1	20	1	13	6	2	1	N	N	1	0	2	0.430447403053228	0.827783467410055	0.827783467410055	0.430447403053228	1	-	0	0.60524179975777
81955	ATTTCTTTCATGTTGTGGGTTCTGGGAGCCCAGAGGGCAGCCATAGTGTGCCGACTCCGTGGAGGAAGTAAAGAAACAGACCCGCTTCTTGCCGCAGCCCCACCAGCCTAAGGTGTTCAGGAAGGCCGG|ACACACCCCCTCAGCCCTCGCCATCATGGAAAATGCCAATGTTCTGGCCCGTTATGCCAGTATCTGCCAGCAGGTGGGCCTGC	1	0.606132694473333	0.254583648908217	0.223418152789081	N	N	3.54144175291192	3.25256697878875	3.25256697878875	splitr	2	0	0.0240963855421686	0	N	0.192771084337349	N	N	83603	37145	ENSG00000130600	ENSG00000149925	-	-	11	16	2022700	30081741	intron	coding	H19	ALDOA	2016406	30064444	-	+	0	2017528	30080227	+	-	Y	-	0.324841280339939	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.44700307240143	0.827783467410055	0.44700307240143	1	-	1572	0.60524179975777
107337	GGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTATTCGTAGGTTCAGTACCATTGATGGCCAATTGATTTGATGGTAAAGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGT|AGGGCTGGGAGGGAGTGGGACAGATTCTGGGAGTGCAGCGGGGAGGAGTCCCGGCTGGGCTGAGCGCAGGGAGCTGCTTGGCAGTGCCAGAGCCCAGGCCCCAGAGCCCTGCTGGAGAGGA	3	1	0.204269397646567	0.357980465865342	N	N	3.61360747730288	3.13383928169109	3.13383928169109	splitr	13	0.0991735537190084	0.0743801652892563	0	N	0.0826446280991734	Y	N	3	16903	ENSG00000230021	ENSG00000188643	-	+	1	1	659930	153585644	intron	utr5p	RP5-857K21.4	S100A16	536816	153579362	-	-	0.0991735537190084	568379	153585566	-	+	N	0.828962371721779	2.62413551412392	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.612559765883441	0.827783467410055	0.827783467410055	0.612559765883441	2	0	543	0.60524179975777
77627	ATCTTCAACTGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGAT|CGGCACCAGCGGCGGCGGCGGCGGCGGGAGGAGGAGGAGGAGAAGAAGGACCAGGCGGCGGCAGCAGCGGCGGCGGCGGGGGGAGGAGGGGAGGAGGCGGCGGAGCAGGAGGAGGAGAAGGCGG	112	0.606132694473333	0.0194499270235832	0.0584309374503073	N	N	3.5319270478477	2.61228018278236	2.61228018278236	splitr	7	0	0	0	N	0	N	N	0	1511	ENSG00000251948	ENSG00000095787	+	-	19	10	24184165	28909928	intron	intron	AC092279.1	WAC	24184075	28821422	-	+	0	24184142	28822082	+	-	Y	1	0.362201403208514	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	1	1	2	0.44700307240143	0.413891733705027	0.44700307240143	0.413891733705027	2	0	2	0.60524179975777
134226	TATACTTGGTAACCGAGGGAATTTCTAAGACTTCTTGCTCATTTCTGAGTATTGTCTTTATATCCTGACACTATGAATGCTACTTGGATGCCTCTTAAG|TCTGTTCTCTGGGGAGGCAGTAAGGGGCCGTGGAGCTGGCCTCGGCCTCGGCATCGGGAGAGGCTGGACTTCCTGTCTCTCTGTGCTGAATGGCTGCGATGGCGCCCGCTCTCACTGACGCAGCAGCTGAAGCACACCATATCCGGTTCAAACTGGCTCCCCCATCCTCTACCTTGTCCCC	1	0.775303715492152	0.163782765099475	0.102428735043176	N	Y	3.58697065584872	3.39483647792751	3.39483647792751	splitr	280	0.98989898989899	0.0101010101010101	0	N	0.98989898989899	N	Y	9	260	ENSG00000120088	ENSG00000120071	+	+	17	17	43913193	44270166	utr5p	utr5p	CRHR1	KIAA1267	43699267	44107334	+	-	0	43699407	44249598	+	+	N	2.31654871441085	5.55533141102316	Y	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.687060277950346	0.463558741749631	0.687060277950346	0.463558741749631	4	2.5	0.5	0.60524179975777
111898	ACGGACGGCCGACTCCCCCTTAAATAGCTGTTTATTTGGCAGTGTGCCGGAAAGGGTGATGGAC|TTATGACATTCACAGCCATAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCC	1	0.0325348019228534	0.20555784636729	0.155228020814782	N	N	3.41576000382978	3.30694823938047	3.30694823938047	splitr	15	0.1875	0.078125	0	N	0.078125	N	N	37145	31	ENSG00000149925	ENSG00000132570	-	+	16	5	30081741	134343649	utr3p	intron	ALDOA	PCBD2	30064444	134240596	+	+	0.1875	30081685	134263407	-	+	Y	0.444200761039675	1.2575464834446	N	SKBR3_13_2_1	3	0	3	3	3	1	N	N	0	0	3	0.488392245771932	0.860894806106457	0.860894806106457	0.488392245771932	2	1277.66666666667	0.666666666666667	0.60524179975777
32009	GTGTGGTAAGGGCGATGAGTGTGGGGAGGAATGGGGTGGGTTTTGTGTGTTCAAACTGTCATTTTATTTTTACGTTGTTAGATATAGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGCAGGTAGAAGTAGAGGTTAAGGAGGGTGATGATGG|ATTCTGTGTGTTTGAGAGCAACGCCATTGCCTACTATGTGAGCAATGAGGAGCTGCGGGGAAGTACTCCAGAGGCAGCAGCCCAGGTGGTGCAGTGGGTGAGCTTTGCTGATTCCGATATAGTGCCCCCAGCCAGTACCTGGGTGTTCCCCACCTTGGGCATCATGCACCACAACAAACAGGCCACTGAGAATGC	1	1	0.254583648908217	0.223418152789081	N	N	3.23631009829935	3.64549358599252	3.23631009829935	splitr	14	0.0897435897435898	0.0897435897435898	0	N	0.096153846153846	N	N	0	492	ENSG00000225630	ENSG00000256322	-	+	1	7	566063	132720699	intron	coding	RP5-857K21.8	AC008038.2	565020	132719842	+	-	0.0897435897435898	565867	132720483	-	+	Y	1	0.451119200321329	N	SKBR3_13_2_1	6	0	5.33333333333333	4	6	1	N	N	0	0	6	1.34928705187839	1.4568989026417	1.4568989026417	1.34928705187839	2	0	37	0.60524179975777
11000	AATAGCCTCCTTGGGTGTCTTGAAGCCCAGACCGATGTTCTTGTAGTACCGCGGGAGCTTCTCCTTGCCAGTTTCTCCCAGCAGGACCCTCTTCTTGTTTTGAAAGATGGTCGGCTGCTTTTGGTAGGCACGCTCAGTCTGAATGT|CCGCCATCATCCTAGTCCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGC	5	1	0.870297324046079	0.5	N	N	3.6533527266709	3.14996302343129	3.14996302343129	splitr	25	0.051094890510949	0.0583941605839416	0	N	0.124087591240876	N	N	14502	3	ENSG00000142534	ENSG00000230021	-	-	19	1	50002944	659930	coding	intron	RPS11	RP5-857K21.4	49999634	536816	+	-	0.051094890510949	49999721	568342	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	4	0	3.42857142857143	2	7	1	N	N	0	0	7	0.960228822195664	1.09267417698127	1.09267417698127	0.960228822195664	2	-	0	0.60524179975777
140493	CCTGAACTGGGTTAGGTGCCGCTGTTGCTGCTCGTGTTGAATCTAGAACCGTAGCCAGACATGGGACTGGAGGACGAGCAAAAGATGCTTACCGAATCCGGAGATCCTGAGGAGGAGGAAGAGGAAGAGGA|AAAGGACAAGGGAGATGAGGAGGAGGAAGGAGAAGAGAAACTTGAAGAGAAACAGAAAAGTGATGCTGAAGAAGATGGTGGCACTGTCAGTCAAGAGGAGGAAGACAGAAAACCTAAAGCAGA	2	1	0.231619174474302	0.323771392476512	N	N	2.89890740312727	2.3559496319588	2.3559496319588	splitr	22	0.105691056910569	0.105691056910569	0	N	0.105691056910569	N	N	4752	16908	ENSG00000173660	ENSG00000127022	+	-	1	5	46782448	179157926	coding	coding	UQCRH	CANX	46769303	179105629	+	+	0.105691056910569	46774789	179151741	+	-	Y	-	-	N	SKBR3_13_2_1	2	0	1.5	1	1	1	Y	N	0	0	2	0.637393269905742	0.44700307240143	0.637393269905742	0.44700307240143	1	-	-	0.60524179975777
28186	TCAAGCCATTGGCACACAGGCATTAGACAGAAAGCTGGAAGTTGAAATGGTGGAGTCCAACTTGTCTGGACCAGCTTAATGGTTCTACTCCTGGTAAC|GTTTTTATCCATGGATGACTTGCTTGGGTAAGGACATGAAGACAGTTCCTGTCATACCTTTTAAAGGTACATGTTTTATTGATGTTAACGTTAATTGATTGAGCTACTGTTAGTGATGATTTTAAAATTAAAGCAGATGGGAATCTCTCTGAGAAAGA	2	1	0.226190941649262	0.313727891882291	N	Y	3.69465606457231	3.53615261288309	3.53615261288309	splitr	256	0.979591836734694	0	1	N	0.979591836734694	N	N	0	0	ENSG00000166206	ENSG00000234741	+	+	15	1	27184686	173838020	intron	intron	GABRB3	GAS5	26788693	173833038	-	-	0.979591836734694	26890788	173834674	+	+	Y	1	1	N	SKBR3_13_2_1	1	0	1	1	0	2	N	N	0	0	3	0.554614923164737	0.471836576423731	0.554614923164737	0.471836576423731	4	0	0	0.60524179975777
128912	GAGTTTCTAACATTTTCTAGTTTGTCAGTTTTAAAATATAAAATTCTTTTATGTTTTTAAACCGTCAACCAAGAAGTCAAGACCACTGTCCCCTGCTGAGTTAGGCAATCACTTAAAACTCCAAAGAACTCCAGGCTGAGGAGTTCTTTTGGTGCTGAACAGTGGTCTGACAACAGGTGCTAGAATTAAGGTGTGG|AAAAAAAAAAAAATCAGCCAGGAAGTGTGGGGGTGTGCATACCTGTAGTC	1	1	0.526775457519482	0.600084425908804	N	N	3.60632674564779	2.81875184163682	2.81875184163682	splitr	25	0.46	0.46	0	N	0.48	N	N	484	0	ENSG00000132825	ENSG00000230304	-	+	20	3	58515352	197953181	utr3p	downstream	PPP1R3D	CICP6	58511894	197950368	-	-	0.46	58512736	61412034	-	+	Y	1.02071199880253	-	N	SKBR3_13_2_1	67	1	38.5	10	2	1	N	N	0	1	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	2	15	-	0.60524179975777
75049	AGATGGACCTGCATCAGGCCTGGGGAAGGGGTGCCACCCCTTAATATCAGGTAAAACCCACCCTCTCCCCTCTCCCACTGCCTTCAATATAATTGTGAAAAATAAAGATATAAATGTCATAGTGGGAAATAAGTTGACCCACCCAGTAGGCAGTCTCCTGACAGCCCAGAGTGCCTTATCTAACGCCC|CCCCCCCCCCAACTTTTTTTTTTTTTTATGGCAGGGTCTCACTCTGTCGCC	1	1	1	0.935920242646516	N	N	3.69359248957888	2.78795223587956	2.78795223587956	splitr	0	3.33066907387547e-16	3.33066907387547e-16	0	N	0.490196078431373	N	N	2596	18	ENSG00000085117	ENSG00000102962	-	-	11	16	44641913	57400102	utr3p	utr3p	CD82	CCL22	44585977	57392684	+	+	3.33066907387547e-16	44641352	57398706	-	-	Y	-	-	N	SKBR3_13_2_1	5	0.283018867924528	5	5	2	1	N	N	0	0.283018867924528	2	0.438725237727329	0.438725237727329	0.438725237727329	0.438725237727329	1	-	-	0.60524179975777
133043	TTTTTTTTCCCCCTTAAATAGCTGTTTATTTGGCAGTGTGCCGGAAAGGGTGATGGACTTAGCATTCACAGACGACACCACACACCACTGTCACGAGGGAAGAAAG|AGCACGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTTGTCATCTAATTAGTGACGCACATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGC	1	0.831920382744188	0.20555784636729	0.155228020814782	N	N	3.01079273360219	3.57063922744582	3.01079273360219	splitr	16	0.0660377358490566	0	0	N	0.122641509433962	N	N	37145	356	ENSG00000149925	ENSG00000149262	-	-	16	11	30081741	77705724	utr3p	intron	ALDOA	INTS4	30064444	77589766	+	-	0.0660377358490566	30081637	77597555	-	-	Y	-	1.69881089015784	N	SKBR3_13_2_1	6	1	4.4	3	5	1	N	N	0	1	5	0.720171616646748	1.18373035839638	1.18373035839638	0.720171616646748	1	-	3	0.60524179975777
134064	GCTTGTTTTATTTTAATGGCTGATCTATGTAATCACAGAGGCCAGTATGTACAGACAAAGTGGGAGGTTTTATTTCTTGGTCTCTTCCTCCTTGGATAAAGTCTTGATGATCTCCTCCTTCTTGGCCTGGAGGCGCTCTTCACGGCGCTTGCGTGCTTCCTTGGTCTTAGACCTGCGGGCCTCAGCCTGGTCAGCCAGGAGCTTCTTGCGGGCCTTGTCTGCCTTCAGCTTGTGGATGTGTTCCATGAGAATCCGCTTGTTTTTGAACACATTCCCCTTCACCTTCAGGTACAGGCTGTGATACATGTGGCGATCGATCTTCTTAGATTCACGGTAT|CTTCCGCTCAGCCTGGGGCTTCTGCTTCTCTTCCCGTGAACCCTTCTCTTTCCGTGGTGTGTCCTTTTTAGGCTGGGT	1	0.000113536340696985	0.254583648908217	0.223418152789081	N	N	3.66273010308932	3.24462389972434	3.24462389972434	splitr	15	0.0512820512820514	0.0512820512820514	0	N	0.102564102564103	N	N	129759	492	ENSG00000108298	ENSG00000256322	-	-	17	7	37360980	132720699	coding	intron	RPL19	AC008038.2	37356536	132719842	+	-	0.0512820512820514	37359330	132719934	-	-	Y	-	0.433875404801387	N	SKBR3_13_2_1	14	0	8	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	28	0.60524179975777
135804	CTAGCCCTACCTACTAGCCCTACCTACTAACCCTACCTACTAG|CCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGACTTGGCGGAATCAGCGGGGAAAGAAGACTCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACGTGAGAG	4	0.0231990474629504	0.465528157851362	0.687332409693668	N	N	2.41165565113716	3.38552945952599	2.41165565113716	splitr	12	0	0	0.333333333333333	N	0.116279069767442	N	N	1179	0	ENSG00000129657	ENSG00000226958	-	-	17	X	75213183	108297792	utr3p	intron	SEC14L1	RN28S1	75084831	108297361	+	-	0	75212411	108297533	-	-	Y	-	1	N	SKBR3_13_2_1	28	1	21.3333333333333	12	3	1	N	N	1	1	3	0.504947915120133	0.90228397947696	0.90228397947696	0.504947915120133	1	-	0	0.60524179975777
96384	GGGATGGCATCCGAGATCATCTTCTCCTCAAAAGAGGAGACTTTGCCGATGCCCAGGTTCTTCTCGATGCCCTTTTTCCCAAGCAGCAGCGGTGTGGAGAAGTAGGTACATTCCGTTTCCTGTGACTTAACGAAGGAACATTCCACAACACCTTCCTTTCCATTCATTGCATCCACAAGGGAGAAGACAAAGCGGGCGCCGGCATACGCCATGGAGAGGGTGGCAGAGCCTGCTCCGGCTTTAGCCTTGACCACCTCCGTGCCGGCCT|TCTCCCCAATTACTCCCCTGAATCAATGTACAAATCAGCACCCACATCCCCTTTCTTGACAAATGATTTTTCTAGAGAACTATGTTCTTCCCTGACTTTAGGGAAGGTGAATGTGTTCCCGTCCTCCCGCAGTCAGAAAGGAGACTCTGCCTCCC	1	0.00199647997986577	0.321839855309698	0.321669634186996	N	N	3.39015625214551	3.39231567764112	3.39015625214551	splitr	3	0	0	0	N	0.0516129032258066	N	N	10048	8913	ENSG00000146701	ENSG00000109062	-	-	7	17	75696826	72765498	coding	coding	MDH2	SLC9A3R1	75677369	72744763	+	+	0	75693718	72764858	-	-	Y	-	0.99979748343943	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	420.5	0.60524179975777
109886	ATTATATCCTTCTTGCTCATCAGTTGATGATACGCCCGAGCAGATGCCAACACAGCAGCCATTCAAGCAATCCTATACAACCGTATCGGCGATATCGGTTTCATCCTCGCCTTAGCATGATTTATC|CTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATCACCACCCAACAATGACTAATCAAACTAACCTCAAAACAAATGATAACCATACACAAC	1	0.498396858056923	0.526775457519482	0.600084425908804	N	N	3.49168728493972	2.92192485844774	2.92192485844774	splitr	3	0.0263157894736842	0.0263157894736842	0	N	0.771929824561404	Y	N	54817	38194	ENSG00000198786	ENSG00000198899	+	-	MT	MT	14148	9207	coding	coding	MT-ND5	MT-ATP6	12337	8527	+	+	0.0263157894736842	12906	8599	+	-	N	-	-	N	SKBR3_13_2_1	8	0	5	3	4	6	Y	N	0	0	4	1.05128500361077	1.05128500361077	1.05128500361077	1.05128500361077	2	-	-	0.60524179975777
89133	TTGAGGTTACGGTCTGTTAGTAGTATAGTGATGCCAGCGGCTAGGACTGGGAGAGATAGGAGAAGTAAGACTGCTGTGATTAGGACGGATCAGACGAAA|GCATTTGCCAAGAATGTTTTCATTAACCAAGAACGAAAGTCGGAGTTTCGAAGACGATCAGATACCGTCGTTGTTCCGACCATAAACGATGCCAACTGGTGATGCAGCGGTGTTATTTCCATGACCCGCTGGGCAGCTTCCCAGAAACCAAAGTCTTTGGGTTTTTGGGTTCCCAGGCGAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGGTGGAAGGGCACCACCAGGAGT	62	0.643828295372364	0.0228127364324065	0.0691028852261796	N	N	3.56335849579072	3.44871903508266	3.44871903508266	splitr	9	0	0	0	N	0	N	N	0	0	ENSG00000237973	ENSG00000225840	-	-	1	Y	567996	10036711	intron	downstream	RP5-857K21.6	RN18S1	566454	10036113	+	-	0.0303030303030302	567002	10035844	-	-	Y	1	-	N	SKBR3_13_2_1	9	1	9	9	2	1	N	N	0	1	2	0.745005120669049	0.827783467410055	0.827783467410055	0.745005120669049	2	0	-	0.60524179975777
81843	GGGAGGGAGAAAGAGAGCAAAGAGAGAGAGGAGCAATTGGGGGCCAGCTGGAGAGCTCAGATGGAGCAGGTCAGGAGGTGGAACAATGGCAGAGTGAGGGTGGAGGGCGCAGTGTCTGGAGAG|TGAGGAGCCTGGAGACCGAGAACCGGAGGCTGGAGAGCAAAATCCGGGAGCACTTGGAGAAGAAGGGACCCCAGGTCAGAGACTGGAGCCATTACTTCAAGATCATCGAGGACCTGAGGGCTCAGATCTTCGCAAATACTGTGGACAATGCCCGCATCGTTCTGCAGATTGACAATGCCCG	1	0.264030978823642	0.254583648908217	0.223418152789081	N	N	3.16845387732981	3.18142497659786	3.16845387732981	splitr	11	0.032520325203252	0.032520325203252	0	N	0.0650406504065041	N	N	2107	31732	ENSG00000159335	ENSG00000111057	-	-	12	12	6880118	53346684	utr3p	coding	PTMS	KRT18	6874682	53342655	+	+	0.032520325203252	6879763	53343250	-	-	N	-	-	Y	SKBR3_13_2_1	9	0	7	5	2	1	N	N	0	0	2	0.662226773928044	0.76156079001725	0.76156079001725	0.662226773928044	3	-	-	0.60524179975777
140768	TCGGGAAGGGTTGGTGTTCATCCGCTTGCGGAGGAAAGCCAGGTACTTCAACTTGTTTCTGTAGAAATTGCCAGAAATGTTGATGCCTTCACAGCGTACGAC|CACCACCTTCTTCGACCCAGCCGGAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCTCATCCTACCAGGCTTCGGAATAATCTCCCATATTGTAACTTACTACTC	4	0.304380550793004	0.284467558893999	0.57742962864615	N	N	3.66745018166468	3.30591516961058	3.30591516961058	splitr	21	0	0	0	N	0.0784313725490194	N	N	29339	0	ENSG00000142541	ENSG00000237973	-	-	19	1	49995565	567996	coding	intron	RPL13A	RP5-857K21.6	49990811	566454	+	+	0	49993503	567101	-	-	Y	-	1	N	SKBR3_13_2_1	30	0	18.3333333333333	10	6	2	N	N	0	0	6	1.03472933426257	1.33273138253019	1.33273138253019	1.03472933426257	2	-	0	0.60524179975777
138467	GACGCCCCTGCTAACGGGAATGCTAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACT|AAAAAAAAAAAAGGCCGAGTGCAGTGGCTCACACCTGT	8	1	0.046328107468559	0.0910071316110105	N	Y	3.23999710710482	3.227521491486	3.227521491486	splitr	32	0.342105263157895	0.421052631578947	0.125	N	0.447368421052632	N	N	14698	0	ENSG00000187514	ENSG00000165495	+	-	2	11	232578251	125303285	utr3p	intron	PTMA	PKNOX2	232571605	125034583	+	+	0.368421052631579	232577586	125289785	+	-	Y	-	1	N	SKBR3_13_2_1	210	0.576271186440678	63.6875	5	16	1	N	N	0.276243093922652	0.576271186440678	16	1.4982880760122	0.488392245771932	1.4982880760122	0.488392245771932	2	-	0	0.60524179975777
130645	TGCAGGCTAGGGTACAGGGTGGTGGTAGAGGAGACAAGTTTTATCTCCAGGCCCACAGTCTCTCCCCAACACCCCCCAAGAATTCCAGAGGGAGTTCTCAGTGCCCCCGGACAGGCCTCTCCAGCTTCACACTCTTGGCCGCTTCTCCAATCAGCTCCCAGAAACTCCTGAACTCCAGTTTAGAGTCATTGCAGCT|GCTGGCATCACTATACTACTAACAGACCGTAACCTCAACACCACCTTCTTCGACCCAG	1	1	0.526775457519482	0.600084425908804	N	N	3.49744043328497	3.56142033732694	3.49744043328497	splitr	6	0.0344827586206894	0.0344827586206894	0	N	0.0862068965517243	Y	N	13593	0	ENSG00000189334	ENSG00000237973	-	-	1	1	153589462	567996	coding	intron	S100A14	RP5-857K21.6	153586731	566454	-	+	0.0344827586206894	153587459	567063	+	-	N	-	1	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
60552	GGCGCTGGGAGGACCCAAGGTTCTCAGGTTTGCTTTTGCAGGAGCTCCGTGCAGCAGGGTGGGGTCCACAGTCCCCGCAGTGTCTCCAAAGCCCAGTGTGGTGCCAGCTGCCTCCTTTCTCTGCGGGCTGCTGGGTGGGACGGAGCTGGGCAGAAGGAAGAG|CCTGTGTCGGCTGAGCCCCTCCGTAGGCTGAGCCCTCCGTAGGCTGACCTGCTCTTCGCCGGATGGACTGCGCGCACTTACCTTC	2	1	0.572228613671423	0.435742853891277	N	Y	3.022961377702	3.23527702852946	3.022961377702	splitr	152	0.835294117647059	0.0470588235294118	0	N	0.0352941176470588	Y	N	119	31	ENSG00000141527	ENSG00000232938	-	+	17	17	78182855	81188573	utr5p	upstream	CARD14	AC139099.1	78152274	81174666	+	+	0	78152308	78143936	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.819505632735954	0.480114411097832	0.819505632735954	0.480114411097832	1	-	-	0.60524179975777
79492	CTCCAGTTGGACAGGGGTCCCTCCTCACCCTCCATTGCTCCCACTTCTTGAGTCAGACTTAACTTCTCTGCTAACCCCCTTCACCCCTAGAGAAATAG|CAGGAATTTATTCATTTCTTCTAGATTTTCGAGTTTGTTTGCCTAGAGGTGTTGACAGTATTCTCTCATGGTAGTTTGTACTTCTGTGGGATCAGTGGTGATAT	2	0.474687110956514	0.808744637905766	0.435742853891277	N	Y	3.27448372166755	3.13317693428178	3.13317693428178	splitr	202	0	0	0	N	0	N	N	0	280	ENSG00000244833	ENSG00000255940	-	-	8	8	81864554	86758745	intron	downstream	AC012533.1	REXO1L2P	81806189	86756718	+	-	0	81845976	86755242	-	-	N	1	-	Y	SKBR3_13_2_1	51	1	23.6666666666667	10	3	1	N	N	0	1	3	0.927117483499261	0.869172640780558	0.927117483499261	0.869172640780558	2	0	-	0.60524179975777
139270	GAACTGAGGCCAGGGGAAAACTGCTCCCCACTCAGCCCATGGGAGCCCTGCAGCGGCTGGTGTGCTGTGTAGTGTGGTGGTGAGGGCACAGGTGGAAGATGGGGGTGGCGGCCAGAGGCGGTGGTGATGGTGGGCCTGGGGAAGGGGTGGGGGCGGTGGGAG|TAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGAGGCGCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGACTTGGCGGAATCAGCGGGGAAAGAAGACTCTGTTGAGCTTGACTCTAGTCTGGCACGGTG	3	0.843835262614011	0.167626785193307	0.279157556648517	N	N	2.66922725412701	3.74656995804013	2.66922725412701	splitr	8	0.0246913580246911	0	0.5	N	0.0432098765432098	N	N	3992	0	ENSG00000137309	ENSG00000226958	-	-	6	X	34214008	108297792	coding	intron	HMGA1	RN28S1	34204577	108297361	+	-	0.0246913580246911	34212729	108297450	-	-	Y	-	1	N	SKBR3_13_2_1	8	1	7	6	2	1	N	N	0.20253164556962	1	2	0.653948939253943	0.827783467410055	0.827783467410055	0.653948939253943	2	-	0	0.60524179975777
132157	TCATGCTGAAAGGCTGTGTGGTGGGAACCAAGAAGCGGGTGCTCACCCTCCGCAAGTCCTTGCTGGTGCAGACGAAGCGGCGGGCTCTGGAGAAGATTGACCTTAAGTTCATTGACACCACCTCCAAGTTTGGCCATGGCCGCTTCCAGACCATGGAGGAGAAGAAA|CTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTG	41	1	0.00609544394054543	0.00694912414203923	N	N	3.5816815158199	3.74487454086093	3.5816815158199	splitr	13	0	0	0	N	0.0422535211267606	N	N	22077	0	ENSG00000100316	ENSG00000141161	+	+	22	17	39716394	33516364	coding	intron	RPL3	UNC45B	39708887	33474836	-	+	0	39709205	33478209	-	+	Y	-	1	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.430447403053228	0.422169568379128	0.430447403053228	0.422169568379128	2	-	0	0.60524179975777
115826	AAGTCAACTAGGACTCATAATAGTTACAATCGGCATCAACCAACCACACCTAGCATTCCTGCACATCTGTACCCACGCCTTCTTCAAAGCCATACTATTTATGTGCTCCGGGTCCATCATCCACAACCTTAACAATGAACAAGATATTCGAAAAATAGGAGGACTACTCAAAACCATACCTCTCACTTCAACCTCCCTCACCA|AAGCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGC	8	1	0.13795071734613	0.377563691119921	N	N	2.84652678599792	2.86791432021661	2.84652678599792	splitr	13	0	0	0	N	0.789473684210526	Y	N	54817	3466	ENSG00000198786	ENSG00000228253	+	-	MT	MT	14148	8572	coding	coding	MT-ND5	J01415.25	12337	8366	+	+	0	13459	8483	+	-	N	0.887974009814504	-	N	SKBR3_13_2_1	4	0	3	2	2	4	N	N	0	0	2	0.827783467410055	0.662226773928044	0.827783467410055	0.662226773928044	1	3297.5	-	0.60524179975777
111063	AGTTAAGAAGAATTTACTTAGGCAGATAGTGAAGGCATGGAAGTCCTCCGTAAAGTTTTCCTTTCTAACGAAGAGCAGCCTGTAAAATCCAGCTGCAGACATAGATCCGACAGTTGTGCCACTCCTGTTGAAGATGGCGGCTCCATCTTCCCTTCTCTTTGTCGGCCACATGTA|CGCTTAGTGATAGGTAATAGTCCCTTCGTGGTCACCAAAATGTGTCCAGAATTGGTTCCTTCTGGTGGGTTCTTGGTTTCGCTGACTTCAAGAATGAAGCTGCAGACCCTTGCGGTGAGTGTTACAGTTCTTAAAGATGGTGTGTCTGGAGTTTGTTCCTTCAGATATTCAGATGTGTCCGGAGTTTCTTTCGTTGGG	29	1	0.822978259788772	0.486189070982637	N	Y	3.43361901554253	3.73552766966605	3.43361901554253	splitr	372	0.293103448275862	0	0	N	0	Y	N	0	187	ENSG00000213753	ENSG00000213965	+	-	19	19	59111168	33204701	upstream	intron	AC016629.2	NUDT19	59084870	33182867	+	+	0.0919540229885059	33178174	33190591	+	-	N	-	7.93235650712923	N	SKBR3_13_2_1	582	0.793969849246231	47.3611111111111	1	28	1	N	N	0.589887640449438	0.793969849246231	36	1.4734545719899	1.64728910014601	1.64728910014601	1.4734545719899	4	-	0.0277777777777778	0.60524179975777
132109	TACGGAATTGATGGGTTCTTGGCCTCACTGACTTCAAGAATGAAGTTGCAGACCCTTGCGGTGAGTATTACGGTTCTTAAAGATGGTGTGTCCAGAGTTGTTCATTCCTCTCGGTGCATTCGTGGTCTTGCTGGCCCCAGGAGTGAAGTTGCAGACCTTCGCGGTGAGTGTTAC|AGCTCTTAAAGATGGTGTGTCCAGAGTTTTTCCCTTTAGATGTTCAGATGT	4	1	0.883957023659923	0.928526519438958	N	N	3.64400585547602	3.30960217841604	3.30960217841604	splitr	32	0.215686274509804	0.215686274509804	0.666666666666667	N	0.215686274509804	Y	N	36259	11	ENSG00000100867	ENSG00000133962	-	+	14	14	24114848	92198413	utr5p	intron	DHRS2	CATSPERB	24099378	92047118	+	-	0.215686274509804	24105681	92135232	-	+	N	0.437839734194736	0.944516350070425	N	SKBR3_13_2_1	51	1	24.3333333333333	5	3	1	N	N	1	1	3	0.927117483499261	0.438725237727329	0.927117483499261	0.438725237727329	3	1349.66666666667	0	0.60524179975777
137522	TGCGGACGCAAACATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTG|CTCCGTCTCAGAGGTGGGATGCAAATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACTATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCTACCCTGCACCTGGTGCTCCGTCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCCTG	3	0.000168419011067601	0.406228480701476	0.697348511626705	N	Y	3.48912663185998	3.64553343878587	3.48912663185998	splitr	212	0.816143497757848	0.816143497757848	0	N	0.820627802690583	N	N	5684	19091	ENSG00000221983	ENSG00000150991	+	-	19	12	18688269	125401914	coding	coding	UBA52	UBC	18682614	125396150	+	-	0.816143497757848	18685699	125397651	+	+	Y	-	-	N	SKBR3_13_2_1	9	0	5	1	1	1	Y	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
60073	GCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAACGGAGCAGGTCAAAACTCCCGTGCTGATCAGTAGTGGGATCGCGCCTGTG|AATAGCCACTGCACCCCAGCCTGAGCAACACAGTGAGAATCTGCCTCTATA	3	0.406726107761094	0.304103290313704	0.548268873166959	N	Y	3.58064844605001	3.37080016234644	3.37080016234644	splitr	195	0.549019607843137	0	0	N	0.686274509803922	N	N	3474	58	ENSG00000213741	ENSG00000179399	+	+	14	13	50053094	93519490	upstream	intron	RPS29	GPC5	50043390	92050929	-	+	0.80392156862745	50053548	93413475	+	+	Y	-	0.358645548995463	N	SKBR3_13_2_1	203	1	104.5	6	2	1	N	N	1	1	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	1	-	15	0.60524179975777
105284	GTAGTAAGAATCTCAGGGTTATGCTTATTCCCCAATGGAGGTATGACATATAATCTTTTCTGCCTTTACTTATCAATTCACCAAGGAGCTGTTTTCTCTGCATCTAGGCCATCATACTGCCAGGCTGGTTATGACTCAGAAGATGTTATCTGAAAAAAGTCTATAGAAAAAAAAAAAGTTTCCCCTCCCTCATCAACAAAAGCCCA|TAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTCATTCATTGCCCCCACAATCCTAGG	1	0.534224320064533	0.375556752806067	0.399915574091196	N	N	2.59683754735911	2.69637698852705	2.59683754735911	splitr	23	0	0	0	N	0	N	N	4503	3	ENSG00000257018	ENSG00000230021	+	-	11	1	65271093	659930	utr3p	intron	AP000769.2	RP5-857K21.4	65269505	536816	-	-	0	65270062	569039	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.546337088490636	0.496670080446033	0.546337088490636	0.496670080446033	1	-	0	0.60524179975777
115525	CCCCGCGAAGGGGGTCAGCACCCTTCGGCATGCATTAGCTCTAGAATTACCACAGTTTTCCAAGTAGGAGAGGAGCGAGCGACCAAAAGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCCTGCCTACTTAGACATGTATGGCATAATCTTTGAGACAAGCATATGGTACTGGTAGGATCAAC|CAGGGAAAATGCCAAGTGGAATAAAAACCAACATCAAGTCGGCTTCCATGCATCCCTACCAGCGGTGAGTGTGGCTGGCAACCTCGACTC	1	0.557748642223252	0.254583648908217	0.223418152789081	N	N	3.63978029044062	3.2274272354209	3.2274272354209	splitr	9	0	0	0	N	0	N	N	1	539	ENSG00000256642	ENSG00000159479	-	+	16	1	33962503	43855479	intron	intron	NCRNA00273	MED8	33961052	43849588	-	-	0.0222222222222223	33962503	43850780	-	+	Y	1.06882312456986	1.10108654520968	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	1	0	2	0.413891733705027	0.579448427187038	0.579448427187038	0.413891733705027	1	0	35.5	0.60524179975777
135482	TCTCCAGGGGCCGCCCGTTCACCTTG|GCTGTGGTTTCGCTGGATAGTAGGTAGGGAC	1	0.000404479101783342	0.447538936456759	0.5	N	N	3.28215219450621	3.3709424723516	3.28215219450621	splitr	0	0.5	0	0	N	0.769230769230769	N	N	12436	0	ENSG00000105193	ENSG00000198626	-	+	19	1	39926618	238129359	coding	intron	RPS16	RYR2	39923852	237205505	-	+	0.5	39926301	237766520	+	+	Y	-	1	N	SKBR3_13_2_1	15	1	12.5	10	2	1	N	N	0	1	2	0.678782443276245	0.521503584468335	0.678782443276245	0.521503584468335	2	-	0	0.60524179975777
110993	TCATGGTGTTCCCCTCCTGGGATCCCAGAATCGTGTTGCTCTTCTTTTCTTGCCAATGTATCTTAATAATATCTGGGAAAAATTTCTCAAGAAGACAAAGGTATGTTCCAGCCTTCTGGAGTTTTGTTTCAGCAATCGAAGGAAGAAAAATAGTGGGCTTGGGGGAAACATCTGCATCAAGTTGTTTAT|CTGTAATGATAAGCTTTGTTCCGGGACCAAATACCTTGATTTTTTTGCCCAACTCTTGCCCACCACCTGAGAAG	108	1	0.688220317218846	0.623395948261208	N	Y	3.40215706237596	3.6344911504118	3.40215706237596	splitr	263	1	0	0	Y	0.689189189189189	N	N	0	0	ENSG00000227191	ENSG00000211691	+	-	7	7	38289173	38313248	coding	coding	TRGC2	TRGJP	38279181	38313188	-	-	0	38289173	38313188	+	-	N	1	1	N	SKBR3_13_2_1	2	0	2	2	4	1	N	N	0	0	4	1.03472933426257	0.488392245771932	1.03472933426257	0.488392245771932	4	0	0	0.60524179975777
65752	CGGGTGGCTGAAGGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCACGTAACTAGTTAGCATGCCAGAGTCTCGTTGGTTATTGGAATTAACCAGACAAATCACTCCACCAACTAAGGCCATGCACCACCACCCATGGAACAGAGAAACAGCTATCAATCTGTCAATCCTGTCCCTGTCCGGCCCGGGGGATTTTTCCCATGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCACCAATTCCTTTAAGTTTCAGCTTTGCAACCGTACTCCCCCCGGAACCTAAAAACCCAAAGACTTTGG|GTTCCGAGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACAGAAGGGCACCACCAGGAGTGGAGCCTGCAGCTTAATTTGACTCAACATGGGAAAACTCACCCAGCCTGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCACGGGTGGTGGTGCATGGCCTTA	9	1.99941872350968e-10	0.0427894857001422	0.0873670897396478	N	N	3.1091940518632	3.56960615767593	3.1091940518632	splitr	5	0	0	0	N	0	N	N	1	1	ENSG00000256642	ENSG00000163046	-	+	16	2	33962503	133015542	upstream	intron	NCRNA00273	ANKRD30BL	33961052	132905164	-	-	1.11022302462516e-16	33963642	133012618	-	+	Y	-	0.81549815498155	N	SKBR3_13_2_1	1	1	1	1	0	3	N	N	1	1	2	0.637393269905742	0.430447403053228	0.637393269905742	0.430447403053228	2	-	0	0.60524179975777
119319	GGAGCACTTGGAGAAGAAGGGACCCCAGGTCAGAGACTGGAGCCATTACTTCAAGATCATCGAGGACCTGAGGGCTCAGATCTTCGCAAATACTGTGGACAATGCCCGCATCGTTCTGCAGATTGACAATGCCCGTCTTGCTGCTGATGACTTTAGAGTCAAGTATGAGACAGAGCTGGCCATGCGCCAGTCTGTGGAGAACGACATCCATGGGCTCCGCAAGGTCATTGATGACACCAAT|GAAATCGCCAATGCCAACTCCCGTCAGCAGATCCGGAAGCTCATCAAAGATGGGCTGATCATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAGCGGAAGGGTACAGCCAATGCCCGAATGCCAGAGAAGGTCACATGGATGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACATGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAAACA	1	1.482048002005e-12	0.254583648908217	0.223418152789081	N	N	3.63978029044062	3.5010341561346	3.5010341561346	splitr	13	0.0414937759336098	0.0414937759336098	0	N	0.0539419087136931	N	N	31732	129759	ENSG00000111057	ENSG00000108298	+	-	12	17	53346684	37360980	coding	coding	KRT18	RPL19	53342655	37356536	+	+	0	53344612	37357551	+	-	Y	-	-	N	SKBR3_13_2_1	110	0	80.5	51	2	1	Y	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	-	0.60524179975777
9331	GGAGTAGTAAGTTACAATATGGGAGATTATTCCGAAGCCTGGTAGGATGAGAATATAAACTTCAGGGTGACCGAAAAATCAGAATAGGTGTTGGTATAGAATGGGGTCTCCTCCTCCGGCTGGGTCGAAGAAGGTGGTGTTGAGGT|TGACTCTAGTCTGGCACGGTGAAGAGCCATGAGAAGTGTAGAATAAGTGGG	10	0.425102282229525	0.891099579895066	0.5	N	N	3.37824872787089	3.70633019513215	3.37824872787089	splitr	11	0.0196078431372549	0	0.666666666666667	N	0.137254901960784	N	N	0	0	ENSG00000237973	ENSG00000198626	-	-	1	1	567996	238129359	intron	intron	RP5-857K21.6	RYR2	566454	237205505	+	+	0.0196078431372549	567094	237766572	-	-	N	1	1	Y	SKBR3_13_2_1	10	1	8.33333333333333	6	3	1	N	N	0	1	3	0.836061302084155	0.579448427187038	0.836061302084155	0.579448427187038	1	0	0	0.60524179975777
141666	CCCTGTACTGGTCATGGCTGAACTCCAGATGTCGTTTGTGCTCCCCGTACGTCTTCCCCCAGGAATGCTTCGAGGTGTATGGCCTCTCCAAGGCTTTCCGATTAAACTTGAATTCTAGCTCACTCTTCTGGAACTTAGCACAATCAGCCCCACACT|CCATGATCCCCAGCTGCTCCAAGAGATCAATGGACACAAATGGGTCCTGCAGGTACCTTGCTTGATCACTCAGCACCCCTGGGGGTCATTAGAAGAAGCTCTACTTCAGAT	3	1	0.116011632945107	0.165947979709814	N	Y	3.45400817511148	3.35975787397237	3.35975787397237	splitr	267	1	0.0180180180180181	0	N	1	Y	N	1759	0	ENSG00000095380	ENSG00000223256	-	+	9	9	100845357	141150148	coding	upstream	NANS	U6.928	100819021	141150045	+	+	0	100823065	100808122	-	+	N	-	-	N	SKBR3_13_2_1	3	1	1.6	1	2	1	N	N	0	1	5	0.786394294039552	0.860894806106457	0.860894806106457	0.786394294039552	1	-	-	0.60524179975777
139798	GAATAAAGGAGATTGTGAAGAAACATTCTCAGTTTATTGGATATCCCATTACTCTTTTTGTGGAGAAGGAACGTGATAAAGAAGTAAGCGATGATGAGGCTGAAGAAAAGGAAGACAAAGAAGAAGAAAAAGAAAAAGAAGAGAAAGA|AGAGGAAAGAGAAAGCCAAGATCCACTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGAACGTGGAGAAGAAAATTGACAAATACACAGAGGTCCTCAAGACCCACGGACTCCTGGTCTGAGCCCAATAAAGAC	1	0.455474139621273	0.375556752806067	0.399915574091196	N	N	1.91693411220085	3.11013383567725	1.91693411220085	splitr	3	0.0608108108108106	0.0202702702702703	0	N	0.081081081081081	N	N	26619	0	ENSG00000080824	ENSG00000236552	+	-	14	10	102606086	98510675	coding	intron	HSP90AA1	RPL13AP5	102547073	98510045	-	+	0.0608108108108106	102551247	98510520	-	-	Y	-	1	N	SKBR3_13_2_1	20	0.229007633587786	16	10	3	1	N	N	0.229007633587786	0	3	0.852616971432356	0.562892757838837	0.852616971432356	0.562892757838837	2	-	0	0.60524179975777
136605	TGTAATGGCTTTGGAGGCACTTGTGGCTTTGGACTTGCAGCTGAGTGTTTTGCTGGCCTGTTCCCATTTATTCCCTGAGCCTCTTCTTCAGATACATTCTCACCAACCAGTGTGGTTGTGCTGCTTGTGGAGCAAGGTGGAACTAAAGCGATCTTTGGACAGGTACTGCTGCCT|GTGGCTCCTGAGGGCACCTGGCCCTTGAAGGCAGCGGTCCCTACACGTCCCAGGTGCGACGCGGGCCTGCTCCAGGGCCGGGGCACCCCGGGCGGCAGGTAGGAGGGGTTGGACTTCCGCCGGATCG	1	1	0.12875022366714	0.0640797573534845	N	Y	3.66488952858494	3.47655676017605	3.47655676017605	splitr	155	0.850393700787402	0	0	N	0.653543307086614	Y	N	184	0	ENSG00000139132	ENSG00000227059	-	+	12	12	32798984	133812681	utr5p	downstream	FGD4	AC226150.2	32638906	133794898	+	-	0	32655271	32552891	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	5	1.26650870513738	1.00161799556617	1.26650870513738	1.00161799556617	1	-	-	0.60524179975777
127593	CGCCCGCGTCCCTTTCTCCATAAAATTCTTCTTAGTAGCTATTACCTTCTTATTATTTGATCTAGAAATTGCCCTCCTTTTACCCCTACCATGAGCCCTACAAACAACTAACCTGCCACTAATAGTTATGTCAT|CCCTCCCCACATCAAGCCCGAATGATATTTCCTATTCGCCTACACAATT	1	0.154066662474196	0.12875022366714	0.0640797573534845	N	Y	3.40591861909494	3.36191729946799	3.36191729946799	splitr	183	1	0.102040816326531	0	Y	0.204081632653061	N	N	12756	37049	ENSG00000198840	ENSG00000198727	+	-	MT	MT	10404	15887	coding	coding	MT-ND3	MT-CYB	10059	14747	+	+	0	10329	15538	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	-	0.60524179975777
66606	ATTTGCAGGGGGGAGCCAAAAGGGTCATCATCTCTGCCCCCTCTGCTGATGCCCCCATGTTCGTCATGGGTGTGAACCATGAGAAGTATGACAACAGCCTCAAGATCATCAGCAATGCCTCCTGCACCACCAACTGCTTAG|CCCCCCCCCCCCCCCCCCCCCCCCCCCCCTGCGCTGAGTACTTTCCGTGTGGTTAA	1	0.621347286188097	0.254583648908217	0.223418152789081	N	N	3.54080991072615	1.86748939904487	1.86748939904487	splitr	6	0.0892857142857143	0.0892857142857143	0	N	0.446428571428571	N	N	62936	0	ENSG00000111640	ENSG00000165553	+	-	12	14	6647537	77737655	coding	intron	GAPDH	NGB	6643093	77731834	+	-	0.0892857142857143	6646503	77736138	+	-	Y	-	1	N	SKBR3_13_2_1	60	0.529411764705882	35	10	2	1	N	N	0	0.529411764705882	2	0.620837600557541	0.422169568379128	0.620837600557541	0.422169568379128	1	-	0	0.60524179975777
136573	GGGTGGTGCTCAGGGTAAAGGGCTATAGGCAACAGGGGACCAGACCAGGGATGAGTGGGGAGGGCACAAGGACCATTTGCCAGAATCCACCGCTTTCTGATTCCAGATTGAAT|TAAAAAAAAAAAAAAAAAAACTAGAAAATGGCTTGGCATGGTGGCTTATGC	1	0.218556686777496	0.899266171301115	0.897571427984624	N	N	3.44719145177281	2.57610330871363	2.57610330871363	splitr	27	0.392156862745098	0.392156862745098	0	N	0.450980392156863	N	N	492	546	ENSG00000132522	ENSG00000130338	-	+	17	6	7222394	158932860	intron	intron	GPS2	TULP4	7214643	158733692	-	+	0.392156862745098	7215450	158793175	-	+	Y	1.04391696480216	1.44926512333387	N	SKBR3_13_2_1	144	1	112.5	81	2	1	N	N	0	1	2	0.728449451320848	0.413891733705027	0.728449451320848	0.413891733705027	2	0	6	0.60524179975777
105775	CATGTGAAGCCCCTGAAACATACACACCCTGGAACTTTCCTCTCCTTATGCACAGATGGACAGGCTGCCTTCCCCTGTCTCTGGGCTCCCCCAATAGCCAGAATCCCTTCCGACTGGTCCCTTGCCCTGAATATCTGGGAA|CCCCCCCCCCCACACACACACACAGCTTAGAGACCCCAGCGACCCCCTG	17	0.504631482821699	0.297439722209499	0.791527398162113	N	N	3.36191729946799	2.5414180593243	2.5414180593243	splitr	21	0.387755102040816	0.387755102040816	0	N	0.428571428571428	N	N	6106	661	ENSG00000165272	ENSG00000179134	-	-	9	19	33447609	39875535	utr3p	intron	AQP3	SAMD4B	33441152	39833108	-	+	0.387755102040816	33441702	39834624	+	-	Y	-	0.147202150899009	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.629115435231642	0.413891733705027	0.629115435231642	0.413891733705027	3	-	0.5	0.60524179975777
127071	CGGCAGAGAAGGAATCCGACGGCTTGAGGAACTCCTGCGCCGAGCCCAGGATGACATTGCAGTCACGGTCAGTGCAGAGGAAGCAGCCGACCAGTGTCCGTCCATCTGTCATGCGAATGCGCATAGTCTTGTTGAGCAGCGCCTCTAGCTGCTGTCGGGCGCGCTCAGCCGCCGAGTCCTCGCGCTCTCCGTCCGAATC|CTCTGCTTTTCCTCAGTTCCAGCTTCTTTCTCTTTCATGGTACCTCAGTTGCTTCTACTTTATTGGATAGTGTTGGAGATCATGGAGGGAAGGCAAATATACGCGCGGCCGAGCCGAGGCGAATCCGGAGCGCGAATCCG	22	0.0176459569350227	0.857130109763332	0.447577139099029	N	Y	3.1117894000631	2.92332865057822	2.92332865057822	splitr	339	0.97142857142857	0.0142857142857142	0	N	0.97142857142857	N	N	609	0	ENSG00000183011	ENSG00000213147	-	+	17	10	7761172	135516024	coding	upstream	LSMD1	XXyac-YRM2136_A.1	7760005	135515571	-	+	0	7760516	70039076	+	+	Y	-	-	N	SKBR3_13_2_1	4	0	3	2	2	1	N	N	0	0	2	0.778116459365451	0.769838624691351	0.778116459365451	0.769838624691351	3	-	-	0.60524179975777
132412	CCTGCCAGAGAGGCTGGAGGTGAATGGAAGAGAATCCGAAGAAGAAAATCTCAATAAATCTGAAATAAGTCAAGTGTTTGAGATTGCACTTAAACGGAACTTGCCTGTGAATTTCGAGGTG|ACACATCTCTCTCACTTCATGAGACAAAGAAGAACCTTGAGCAAGTGAGTGACCATCACTAAAAGTCATCCACATGCTGGCCCTTGATTTCCTGGGAAATCTCCCTGAGATGGTCACAGTGGTACTCTCCAG	1	1	0.254583648908217	0.223418152789081	N	N	3.684245618384	3.26377710103217	3.26377710103217	splitr	2	0.0165289256198349	0	0	Y	0	N	N	3773	0	ENSG00000124214	ENSG00000124191	+	+	20	20	47804904	42698256	coding	intron	STAU1	TOX2	47729878	42543492	-	+	0.0165289256198349	47741122	42552923	-	+	N	-	1	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	3	0.860894806106457	0.827783467410055	0.860894806106457	0.827783467410055	2	-	0	0.60524179975777
141056	GGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTATTCGTAGGTTCAGTACCATTGATGGCCAATTGATTTGATGGTAAAGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGA|GGCTGCTGAGATGGGAAAGGGCTCCTTCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAGTGTGAACATGGTATCACCATTGATACCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCGTTGATGCCCCAGGACACA	4	1	0.922486819675656	0.78268225771684	N	N	3.51001030496889	3.42424163912411	3.42424163912411	splitr	5	0.0352112676056338	0.00704225352112675	0	N	0.0985915492957746	N	N	3	0	ENSG00000230021	ENSG00000214199	-	+	1	2	659930	107315132	intron	intron	RP5-857K21.4	EEF1A1P12	536816	107313787	-	-	0.0352112676056338	568384	107314998	-	+	Y	0.828962371721779	1	N	SKBR3_13_2_1	42	0	28	18	3	1	N	N	0	0	3	0.985062326217965	1.20028602774458	1.20028602774458	0.985062326217965	0	0	0	0.60524179975777
56703	CAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTGGTTGCCCC|ACTAAAACACTTACCAAGACCTCAACCCCTGACCCCCATGCCTCAGGATACTCCTCAATAGCCACCGCTGTAGTATATCCAAAAACAACCATCATTCCCCCCAAATAAATTAAAAAAACCATTAAACCCATGTAACCTCCCCCGTAATTCAGAATAATAACACACCCAATCACACCACTAACAATCAATACTAAACCCCCATAAATAGGAGAAGGCTTAGAAGA	1	0.873398118628462	0.899266171301115	0.897571427984624	N	N	3.18718747251292	3.0725081590115	3.0725081590115	splitr	4	0.0209424083769634	0	0	N	0	N	N	83603	0	ENSG00000130600	ENSG00000249119	+	+	11	5	2022700	134260334	intron	intron	H19	MTND6P4	2016406	134259813	-	+	0.0209424083769634	2019008	134260093	+	+	Y	6.03916052289248	1	N	SKBR3_13_2_1	3	0	2.4	2	5	1	N	N	0	0	5	1.36584272122659	0.960228822195664	1.36584272122659	0.960228822195664	1	1724.8	0	0.60524179975777
134409	TATTCATCGGCGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTATCCCGATGCATACACCACATGAAATATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAG|GACAGTGGGAATCCCGTTCATCCATTCATGCGCGTCACTAATTAGATGACAAGGCATTTAGCTACCTTAAGAGAGTCATAG	1	0.613719197459347	0.800133926999915	0.844771979185218	N	N	3.38652267650252	3.6623288755052	3.38652267650252	splitr	1	0	0	0	N	0.0493827160493827	N	N	0	0	ENSG00000237973	ENSG00000252967	+	+	1	7	567996	68527662	intron	upstream	RP5-857K21.6	AC093693.2	566454	68527589	+	+	0	567844	68527569	+	+	Y	1	-	N	SKBR3_13_2_1	10	1	10	10	2	1	N	N	0	1	2	0.596004096535239	0.827783467410055	0.827783467410055	0.596004096535239	1	0	-	0.60524179975777
122935	GACCCATCTTCAACTGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTAC|TACCACCAATTTTGTAGACATCCTGGAGAGGCAGGCGCAAGGGCTTGTCAGTTGGACGAGTTGGTGGTAGGATGCAGTCCAGAGCCTCAAGCAGCGTGGTTCCACTGGCATTGCCATCCTTACGGGTGACTTTCCATCCCTTGAACCAAGGCATCTGAAACACAAGCATGCCAATTTGTGTAAGCATGAAATCGCCATTCCCAGAGCTTTTTAACAATGGTCTTGAAAGCCACTTACGTTAGCACTTGGCTCCAGCATGTTGTCACCATTCCAACCAGAAATTG	1	0.264030978823642	0.899266171301115	0.897571427984624	N	N	3.61936062564813	3.78105657260285	3.61936062564813	splitr	9	0	0	0	N	0	N	N	0	108743	ENSG00000251948	ENSG00000156508	+	-	19	6	24184165	74233520	intron	intron	AC092279.1	EEF1A1	24184075	74225473	-	-	0	24184130	74228418	+	-	Y	1	0.99003579974075	N	SKBR3_13_2_1	38	1	24	10	2	1	N	N	1	0	2	0.413891733705027	0.827783467410055	0.827783467410055	0.413891733705027	1	0	4072	0.60524179975777
128477	TTACTCTTTTTGTGGAGAAGGAACGTGATAAAGAAGTAAGCGATGATGAGGCTGAAGAAAAGGAAGACAAAGAAGAAGAAAAAGAAAAAGAAGAGAAAGAGTCGGAAGACAAACCTGAAATTGAAGATGTTGGTTCT|GAAGAGGAAGAAGAGAAGGAAGAGGAAAAGGACAAGGGAGATGAGGAGGAGGAAGGAGAAGAGAAACTTGAAGAGAAACAGAAAAGTGATGCTGAAGAAGATGGTGGCACTGTCAGTCAAGA	1	1	0.254583648908217	0.223418152789081	N	N	3.5010341561346	2.14981400034477	2.14981400034477	splitr	20	0.155737704918033	0.155737704918033	0	N	0.213114754098361	N	N	26619	16908	ENSG00000080824	ENSG00000127022	+	-	14	5	102606086	179157926	coding	coding	HSP90AA1	CANX	102547073	179105629	-	+	0.155737704918033	102551210	179151715	-	-	Y	-	-	N	SKBR3_13_2_1	1	0.468468468468468	1	1	0	1	Y	N	0.30718954248366	0.468468468468468	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	-	0.60524179975777
112684	ATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACCCTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACTCTCGAGGTGGAGCCG|CCACAGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCA	4	1	0.0285733796626332	0.0201399809507012	N	N	3.67849247003875	3.54872248456702	3.54872248456702	splitr	11	0	0	0	N	0.195402298850575	N	N	19091	0	ENSG00000150991	ENSG00000252318	+	+	12	2	125401914	133038738	coding	intron	UBC	AC097532.1	125396150	133038647	-	-	0	125397121	133038726	-	+	Y	-	1	N	SKBR3_13_2_1	16	1	14	12	3	1	N	N	0	1	3	0.860894806106457	0.488392245771932	0.860894806106457	0.488392245771932	1	-	0	0.60524179975777
130897	TGGCTAGACTCAGGTTTCTCTGTGTGACCCGTTGGAGGCGGGTGGGACGCTCACAGG|TGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCAGTTGAAGATGGGTCA	2	0.0838895735633899	0.273749178614453	0.400055211393303	N	N	3.38552945952599	3.58424216889964	3.38552945952599	splitr	4	0	0	0	N	0.0350877192982456	N	N	1195	0	ENSG00000132746	ENSG00000251948	-	+	11	19	67448671	24184165	coding	intron	ALDH3B2	AC092279.1	67429633	24184075	-	-	0.0701754385964912	67430692	24184147	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	0	1	2	0.695338112624446	0.513225749794234	0.695338112624446	0.513225749794234	1	-	0	0.60524179975777
131110	TGTGGTGGGGGACTGAGTGTGGCAGGGACTCCCCAGCAGTGAGGGTCTCTCTCTTCCTCTTGTGCTCTTGCTGGGGCTGGTGGTCCAGGGGTCTTACTCCTTGGAGGCCATGTGGGCCATGAGGTCCACCACCCTGTTGCTGTAGCCAAATTCGTTGTCAT|TGCCCTCAACGTCCACTTTGTCAAGCTCATTTCCTGGTATGACGATGAATTTGGCTACAGCAACAGTGTGGTGGACCTCATGGCCCACGTGGCCTCCAAGGAGTAAGACCCCTGGACCACCAGC	6	0.643828295372364	0.105297240818105	0.23970044868304	N	N	3.60103760561896	3.54872248456702	3.54872248456702	splitr	6	0	0	0	N	0.0564516129032256	N	N	62936	0	ENSG00000111640	ENSG00000230478	-	+	12	X	6647537	86680693	coding	intron	GAPDH	RP1-52D1.1	6643093	86680586	+	-	0	6647269	86680691	-	+	Y	-	1	N	SKBR3_13_2_1	4	0	3.5	3	2	1	N	N	0	0	2	0.44700307240143	0.471836576423731	0.471836576423731	0.44700307240143	2	-	0	0.60524179975777
140224	CAGCGCCAGTAGAGGCAGGG|GAGGAAGAAGCGAATGCGCAGGCTGAAGCGCAAAAGAAGAAAGATGAGGCAGAGGTCCAAGTAAACCGCTAGCTTGTTGCACTGTGGAGGCCACAGGAGCAGAAACATGGAATGCCAGACGCTGGGGATGCTGGTACAAGTTGTGGGACTGCATGCCACTGTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCCGATCACCTCTGAGACCCACCTTGC	1	1	0.261533274614987	0.233421673643755	N	Y	2.80754104016952	2.96477354992475	2.80754104016952	splitr	0	0.0500000000000004	0	0	N	0.650000000000001	N	N	62936	2350	ENSG00000111640	ENSG00000128731	-	-	12	15	6647537	28567298	coding	intron	GAPDH	HERC2	6643093	28356186	+	-	0.0500000000000004	6646845	28560853	-	-	Y	-	0.929641390869137	N	SKBR3_13_2_1	28	0	26.6666666666667	26	3	1	N	N	0	0	3	0.529781419142435	0.736727285994949	0.736727285994949	0.529781419142435	2	-	11.6666666666667	0.60524179975777
139406	CTGGGTTGAGACTAGGACCACGATCATCAAAACTATCTCTTCTAAAGTGCCTTTTTTCTTCCC|AATCATCCCTAGGTACTCTGTATGGTGGCTCCTATGCAGCAGATCTGTCA	2	0.020115041656665	0.866285356051321	0.400055211393303	N	Y	3.08148430784579	3.51207644450867	3.08148430784579	splitr	113	0.92	0.92	1	N	0.92	N	N	3415	0	ENSG00000015479	ENSG00000232952	-	+	5	1	138667360	106436139	coding	intron	MATR3	RP11-90H3.1	138609441	106434361	+	+	0.92	138643637	106434893	-	+	Y	-	1	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.811227798061854	0.521503584468335	0.811227798061854	0.521503584468335	1	-	0	0.60524179975777
85640	GGCCAATTGATTTGATGGTAAAGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGTAGGGATGGGAGGGCGATAAGGACTAGGAT|GATGAGGATGAGGATGACGATGATGAGGAGGACAATGATGAGGATGACAATGATGAGGATGACGATGATGAGGACGACGACGAGGCGGAGGACAATGATGAGGATGAGGACGACGACGAGGAGGAATAGCTGTGATGGAAGGACTAGAGCGAAAGGGC	2	1	0.374808295748621	0.564257146108723	N	N	3.11807691474166	2.71302993892737	2.71302993892737	splitr	4	0	0	0	N	0	N	N	3	508	ENSG00000230021	ENSG00000122085	-	+	1	2	659930	242041747	intron	coding	RP5-857K21.4	MTERFD2	536816	242014469	-	-	0	568350	242035541	-	+	Y	0.828962371721779	0.47426269701945	N	SKBR3_13_2_1	2	0.706766917293233	2	2	3	1	N	N	0	0.706766917293233	3	0.736727285994949	1.10095201165537	1.10095201165537	0.736727285994949	2	0	26.6666666666667	0.60524179975777
6839	AATTGCCACCTCCAGGTCCTCCTCCATACCCATTATAGCCATCCCCAAATCCACGTCCACTGCCATATCCATCAGATCCTCCTCTAAAGTTACTTCCTGGTCCTGGTCCGAAATTTCCACCGCCACCACGTGAATCCCCAAAGCCAAAGTTGCCTCCTCTTCCACTCCTAGAACTCTGAACTTCCTG|CCCGCCATCATCCTAGTCCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGGTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTACACTCATGAGCTGT	1	8.30279108905066e-05	0.899266171301115	0.897571427984624	N	N	3.33890470608699	3.08507803069543	3.08507803069543	splitr	14	0.0695187165775399	0.0374331550802139	0	N	0.0802139037433156	N	N	13407	3	ENSG00000122566	ENSG00000230021	-	-	7	1	26241149	659930	coding	intron	HNRNPA2B1	RP5-857K21.4	26229547	536816	-	-	0.0695187165775399	26236210	568341	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	3	0	2.5	2	2	3	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
122303	CTACATGGAGAAACTCCGCCTCTAGTAAAAATACAAAATTAGCCGGGCATGGTGGTGCACGCCTCTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAAGTGGAGGTTGCAGTGAGCCAAGAGTACACCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCG|TCTTAAAAAAAAAAAAAAAAGAACTCTCAAAACTAACATTGGTCAAAAGAT	5	1	0.96744020512574	0.991276649582432	N	Y	3.35823029066252	2.49533701978843	2.49533701978843	splitr	221	0.372549019607843	0.450980392156863	0.333333333333333	N	0.470588235294118	N	N	6037	3	ENSG00000197879	ENSG00000148143	+	-	17	9	1395995	109775915	utr3p	intron	MYO1C	ZNF462	1367480	109625378	-	+	0.372549019607843	1368129	109733857	-	-	Y	-	1.00674263623505	N	SKBR3_13_2_1	140	1	92.6666666666667	2	3	1	N	N	1	0	3	0.711893781972647	0.44700307240143	0.711893781972647	0.44700307240143	1	-	0	0.60524179975777
138040	GATGTGTTCTTAATTTGCTTTTCCCTTGTGAGTCCTGCATCATTTGAAAATGTCCGTGCAAAGTGGTATCCTGAGGTGCGGCACCACTGTCCCAACACTCCCATCATCCTAGTGGGAACTAAACTTGATCTTAGGGATGATAAAGACACGATCGAGAAACTGAAGGAG|AAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGG	1	1	0.20555784636729	0.155228020814782	N	N	3.29231222815676	3.72295779798213	3.29231222815676	splitr	16	0.0641025641025641	0.0641025641025641	0	N	0.17948717948718	N	N	6412	0	ENSG00000136238	ENSG00000141161	+	+	7	17	6443608	33516364	coding	intron	RAC1	UNC45B	6414154	33474836	+	+	0.0641025641025641	6441603	33478215	+	+	Y	-	1	N	SKBR3_13_2_1	4	1	4	4	2	1	N	N	0	1	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	2	-	0	0.60524179975777
47524	GTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTATTCGTAGGTTCAGTACCATTG|GTAGCCAAATGCCTCGTCATCTAATTAGTGAGGCGCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGACTTGGCGGAATCAGCGGGGAAAGAAGACTCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACGTGAGA	2	1	0.419771231117896	0.626856592055952	N	N	3.48374420587532	3.75169126419961	3.48374420587532	splitr	9	0	0	0.333333333333333	N	0	N	N	3	0	ENSG00000230021	ENSG00000226958	-	-	1	X	659930	108297792	intron	intron	RP5-857K21.4	RN28S1	536816	108297361	-	-	0.0121951219512195	568443	108297469	-	-	Y	0.828962371721779	1	N	SKBR3_13_2_1	12	1	9.33333333333333	6	3	1	N	N	0	1	3	0.513225749794234	0.90228397947696	0.90228397947696	0.513225749794234	3	0	0	0.60524179975777
69062	TCAGGGCATCCACCTTGGCCTCCAGCTCCACCTTGCTCATGTAGGCAGCATCCACATCCTTCTTCAGCACCACA|CACTCATTCTCAACCCCCTGACAAAACATATAGCCTACCCCTTCCTTGTACTATCCCTGTGAGGCATAATTATAACAAGCTCCATCTGCCTGCGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATCCTCATCC	1	1	0.375556752806067	0.399915574091196	N	N	3.39018675736904	3.25000632570901	3.25000632570901	splitr	14	0.027027027027027	0	0	N	0.108108108108108	N	N	34840	31	ENSG00000135480	ENSG00000132570	-	+	12	5	52662180	134343649	coding	intron	KRT7	PCBD2	52626954	134240596	+	+	0.027027027027027	52631338	134262987	-	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	3	0	2.5	2	2	2	N	N	0	0	2	0.504947915120133	0.827783467410055	0.827783467410055	0.504947915120133	1	-	1	0.60524179975777
126240	CCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTGGTTGCCCCTCGGTTCC|CCGCATCGCCCCGCGCCCCGCGTCGGGGCCCATCCGGCC	1	0.072888231487881	0.375556752806067	0.399915574091196	N	N	3.19553177916145	2.55969147364084	2.55969147364084	splitr	2	0.0512820512820513	0.0512820512820513	0	N	0.0769230769230768	N	N	83603	0	ENSG00000130600	ENSG00000215030	-	+	11	17	2022700	17287326	intron	intron	H19	AC073621.1	2016406	17286691	-	-	0.0512820512820513	2019016	17287195	+	+	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.703615947298547	0.827783467410055	0.703615947298547	1	-	0	0.60524179975777
28107	AAAGGGCCTGCAAGGAGAAGAAATCCTCAAAGCTGTTTTTTTTTTTTTTTT|TTCAAAAAAATGCATAAAAGAATTTCAACTCATGTGCATGCCACACATTTCCATCCCCACCCCACCCTGCCCCACCCTCTACAGGCACACATA	5	0.0983835449148147	0.775075210555943	0.970307377767744	N	N	2.81556869394113	3.07892365476605	2.81556869394113	splitr	27	0.294117647058823	0.254901960784314	0	N	0.352941176470588	N	N	0	6548	ENSG00000235857	ENSG00000113719	+	+	Y	5	59001635	172379688	upstream	utr3p	CTBP2P1	ERGIC1	59001391	172261278	+	+	0.294117647058823	22815521	172379522	+	+	Y	-	0.572957560330443	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	1	0	2	0.422169568379128	0.562892757838837	0.562892757838837	0.422169568379128	2	-	79.5	0.60524179975777
109507	GGGATTCGGCGCTGGGCTCTTCCCTGTTCACTCGCCATTACTGAGGGAATCCTGGTTAGTTTCTTTTCCTCCGCTGACAAATATGCTTAAATTCAGCGGGTCGCCACGTCTGATCTGAGGTCGCGGGCCTCGATCAGAAGGACTTGGGCCCCACACGAGCGGCGCCGGGGAGTGGGTCTTCCGTACGCCACATTTCCCGCG|GCGGGTGTTGATGCGATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAAACGGCAGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGAGGCGCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGACTTGGCGGAATCAGCGGGGAAAGAAGACTCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACGTGAGAGGTGTA	1	3.18387501489128e-08	0.899266171301115	0.897571427984624	N	N	3.41576000382978	3.25037704806959	3.25037704806959	splitr	6	0	0	0.666666666666667	N	0.00497512437810943	N	N	0	0	ENSG00000141161	ENSG00000226958	+	-	17	X	33516364	108297792	intron	intron	UNC45B	RN28S1	33474836	108297361	+	-	0.0298507462686567	33478351	108297364	+	-	Y	1	1	N	SKBR3_13_2_1	5	1	4.66666666666667	4	3	1	N	N	0.61576354679803	1	3	1.24167520111508	0.670504608602144	1.24167520111508	0.670504608602144	1	0	0	0.60524179975777
128608	ATACAAAATTAGCCAGGTGTGGTGGTGCATGCCTGTAATCCCAGCTACTCG|GGGAGGCTGAGGCAGGAGGATCGCTTGAGCCCAGGAGTTTAAAGCTGCAGTGCCCTGTGGTTGCACCTGTGAATAACTGCACTCCAGCCTGGGCAACATAGCGAGACCTCATCTCCAAAAAAGAAAACAAAAAACAAAAAAAGGAATGATGTTCTGTAGAGA	1	0.865761430621063	0.254583648908217	0.223418152789081	N	Y	3.55657227767559	3.16931911323036	3.16931911323036	splitr	213	0.549019607843137	0	0	N	0.274509803921569	N	N	160	6167	ENSG00000213988	ENSG00000166913	-	-	19	20	20237885	43537173	intron	utr3p	ZNF90	YWHAB	20188803	43514317	+	+	0	20190869	43535977	-	-	Y	-	0.847127187577702	N	SKBR3_13_2_1	77	1	55	33	2	1	N	N	1	0.8	2	0.562892757838837	0.827783467410055	0.827783467410055	0.562892757838837	2	-	157.5	0.60524179975777
128269	GCCCCACCGCGGGGCGGGGATTCGGCGCTGGGCTCTTCCCTGTTCACTCGCCATTACTGAGGGAATCCTGGTT|AGTATGCTTCTCCCACAGCTGTGGCTGCAGGAACTTAATTTATAGGGAGGAGCCTGTGGCAGCTGCTGCCCCAGCCACAGCTGCACTGACTGTGCTCACCACACATCTGGGGCAGCCTTCCCTGGCAGAGGCCCTCATGGCTTCTCATTTTCCATTCCCTTCACTGTGGCTAAGGGGTGGGGTGA	1	1	0.375556752806067	0.399915574091196	N	N	3.6623288755052	3.71720464963688	3.6623288755052	splitr	3	2.22044604925031e-16	0	0	N	2.22044604925031e-16	N	N	0	111	ENSG00000141161	ENSG00000164830	+	+	17	8	33516364	107764922	intron	intron	UNC45B	AC090579.1	33474836	107282473	+	+	2.22044604925031e-16	33478207	107709236	+	+	Y	1	0.754030749736157	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	1	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	0	1	0.60524179975777
76512	GCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAG|CGCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGACTTGGCGGAATCAGCGGGGAAAGAAGACTCTGTTGAGCTTGACTCTAGTCTGGCACGGTGA	1	1	0.254583648908217	0.223418152789081	N	N	3.62873800206655	3.684245618384	3.62873800206655	splitr	1	0	0	1	N	0.689075630252101	N	N	0	0	ENSG00000162669	ENSG00000226958	-	-	1	X	91870426	108297792	intron	intron	HFM1	RN28S1	91726323	108297361	-	-	0.0084033613445378	91852995	108297502	-	-	Y	1	1	N	SKBR3_13_2_1	5	1	5	5	2	1	N	N	1	1	2	0.44700307240143	0.827783467410055	0.827783467410055	0.44700307240143	1	0	0	0.60524179975777
10992	TGCTGCTGTTGCTGTTGTTGTTGCTGCTGTTGTTGCTGCTGTTGCTGCTGCTGTTGTTGTTGCTGCTGCT|GTTGCTGTTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGCTGCTGCTGCCTTTGTT	1	0.0389914186158642	1	0.935920242646516	N	N	2.22578690386974	2.17862359420082	2.17862359420082	splitr	85	0.766666666666667	0.7	0.5	N	0.6	N	N	0	137	ENSG00000213147	ENSG00000112592	-	+	10	6	135516024	170881957	upstream	coding	XXyac-YRM2136_A.1	TBP	135515571	170863390	+	+	0.766666666666667	99804236	170871047	-	+	Y	-	0.762936964041788	N	SKBR3_13_2_1	25	0.935779816513762	15	5	2	1	N	N	0.8	0.935779816513762	2	0.745005120669049	0.827783467410055	0.827783467410055	0.745005120669049	2	-	2.5	0.60524179975777
55203	GCTCAGGCCCATCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTGGTTGCCCCTC|GGCTCCTCCACCCCCATGCGCAGATCCCACCAGCCAGCAAGCTAAAGCATGGCGGCCATCCCCTCCAGCGGCTCGCTCGTGGCCACCCACGACTACTACCGGC	2	0.146212534372026	0.294240693901846	0.435742853891277	N	N	3.07038858630923	3.17569475619156	3.07038858630923	splitr	2	0.0194174757281552	0.0194174757281552	0	N	0.0291262135922329	N	N	83603	2813	ENSG00000130600	ENSG00000125534	-	-	11	20	2022700	62153559	intron	intron	H19	PPDPF	2016406	62152077	-	+	0.0194174757281552	2019010	62152614	+	-	Y	-	0.923667805446025	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.521503584468335	0.827783467410055	0.827783467410055	0.521503584468335	2	-	374.5	0.60524179975777
128375	CTTCTGTCTTGTTGATATCAAGACCTGCTAATTTCAAGGCTAATTCATTGCTGTTGCCACTTGCAGAGGAAACCAGGATATCATGTATTGCATTTCTTCTACCTGTTCTTCCTGAAGCAATAAAATCTGCATATGTAGTTTCCACATCAGTCATTGCTACCAAATATCCACATAGCAGGGA|CTGCTCAGGTGTGTGCTGGCAGGGGGCCGATGGGGTTCCCAGGAGAACCGGGGAAGCCCTCTCAGCTCGATTCAGGATTCCCCCCTGCTTCTGGGTTAGGCTGC	1	1	0.800133926999915	0.844771979185218	N	N	3.44040523365767	3.21063179870157	3.21063179870157	splitr	3	0	0.0288461538461539	0	N	0.0288461538461539	N	Y	245	2153	ENSG00000171033	ENSG00000131759	-	+	8	17	79517502	38513895	utr5p	utr5p	PKIA	RARA	79428374	38465436	+	+	0	79510593	38465538	-	+	Y	-	0.119928737548817	N	SKBR3_13_2_1	1	0	1	1	0	2	N	N	0	0	4	0.935395318173362	0.579448427187038	0.935395318173362	0.579448427187038	4	-	2.25	0.60524179975777
67962	CTTTATTTTATTGTTTTGGACATTTTTGAGCGCCGTGGCTTGAACGGTGCTTTTTGTTCATTCCTGGGTTTTAATATTATTTTCCTTCTTCATCCCTCTCTGGCCACTATGGAATTCTAATTTGAACCATGTTTGGATTGAAGCCGCCTCTGTATTACTTACCAGG|CATGAGCCATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACCGTCAACCCCCTCACCCCCTCGCCGCTCAATGGCGCCCTGGTGCCCAGCGGCAGCCCCGCCACCAGCAGCGCGCTGTCGGCCCAGGCCGCGCCATCCTCCAGCTTTGCCGCCGCGCTGCGCAAGCTCG	5	1	1	0.628500870688971	N	Y	3.8097595335968	3.55128313764676	3.55128313764676	splitr	360	1	0.0180722891566267	0	N	0.0180722891566267	Y	N	18	4520	ENSG00000203451	ENSG00000131149	+	-	16	16	90233540	85709810	upstream	coding	AC133919.1	KIAA0182	90232651	85645023	+	+	0	85589970	85667521	+	-	N	-	0.181027314907663	N	SKBR3_13_2_1	1	0	1	1	0	4	N	N	0	0	9	1.16717468904818	1.60589992677551	1.60589992677551	1.16717468904818	1	-	6.33333333333333	0.60524179975777
74530	TTCAACTGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACC|TGCAGCGGCTGGTACCCGTTGTTCCTTTCCATGTTTAGCGCTTCCTTCAGGAGCTCTTTTGCGTGCGGCCGGGCGCTTGGCGCCAGAAGCGAGAGCCCCTCAGGGCTCGCCCCCCCGCCTCACCGGGTCAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGGCCCGCAGGGCC	2	1	0.196734923242299	0.258789252325421	N	N	3.5010341561346	3.50678730447985	3.5010341561346	splitr	60	0	0	0	N	0	N	N	0	0	ENSG00000251948	ENSG00000226958	+	+	19	X	24184165	108297792	intron	upstream	AC092279.1	RN28S1	24184075	108297361	-	-	0	24184149	108297895	+	+	Y	1	-	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	1	0.974358974358974	2	0.504947915120133	0.827783467410055	0.827783467410055	0.504947915120133	1	0	-	0.60524179975777
103929	GATTATTCCGAAGCCTGGTAGGATGAGAATATAAACTTCAGGGTGACCGAAAAATCAGAATAGGTGTTGGTATAGAATGGGGTCTCCTCCTC|CGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTTGTCATCTAATTAGTGACGCACATGAATGGATGAACGAGATTCCCAC	1	0.19148986645833	0.800133926999915	0.844771979185218	N	N	3.5246463161926	3.75744441254485	3.5246463161926	splitr	7	0.0674157303370785	0.0674157303370785	0	N	0.101123595505618	N	N	0	356	ENSG00000237973	ENSG00000149262	-	-	1	11	567996	77705724	intron	intron	RP5-857K21.6	INTS4	566454	77589766	+	-	0.0674157303370785	567124	77597567	-	-	Y	1	1.69881089015784	N	SKBR3_13_2_1	8	1	6	4	2	2	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	0	7.5	0.60524179975777
99071	CCCCTAATAAAATTAATTAACCACTCATTCATCGACCTCCCCACCCCATCCAACATCTCCGCATGATGAAACTTCGGCTCACTCCTTGGCGCCTGCCTGATCCTCCAAATCACCACAGGACTATTCCTAGCCATGCACTACTCA|ACTTAAACTCCAGCACCACGACCCTACTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCATATCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAA	1	3.18387501489128e-08	0.213920147874536	0.166481204497813	N	N	3.46973068926756	3.24462389972434	3.24462389972434	splitr	8	0.0555555555555556	0.0555555555555556	0	N	0.0694444444444442	Y	N	37049	24767	ENSG00000198727	ENSG00000198763	+	-	MT	MT	15887	5511	coding	coding	MT-CYB	MT-ND2	14747	4470	+	+	0.0555555555555556	14914	5128	+	-	N	-	0.759623715461089	N	SKBR3_13_2_1	2	0	2	2	3	1	N	N	0	0	3	0.76156079001725	0.91056181415106	0.91056181415106	0.76156079001725	1	-	1085.66666666667	0.60524179975777
117598	AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCATTTCACTGAATTTCTTCAGTTTGACATTCAGAGCACTGGGCAGAAATCACATCACG|AAGGCCCGCGGCGGGTGTTGACGCGATGTGATTTCTGCCCAGTGCTCTGAATGTCAAATTGAAGAAATTCAATGAAGCACAGGTAAATGGTGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCG	22	1	0.584460933141871	0.712707617880718	N	N	3.33358506083463	3.3306536853943	3.3306536853943	splitr	2	0	0	0.5	N	0.098901098901099	N	N	0	0	ENSG00000252248	ENSG00000137571	-	+	7	8	68527457	70747299	intron	intron	AC093693.1	SLCO5A1	68527371	70584568	+	-	0	68527411	70602616	-	+	Y	1	1	N	SKBR3_13_2_1	4	1	3.5	3	2	1	N	N	1	0.93953488372093	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	0	0	0	0.60524179975777
60299	TCTTCCCGGTGAAGTTGGGGTTTTCATAGAGGATGATCTTGTGCTCTTGGCTGTCC|TGTAGTCCCAGCTACTTGGGAGGTTGAGGAGGGAGGATCACTTGAGCCCGGGAGGTTCAAGGCTGCAATGAGCCAAGATCGCACTGCTGAACTCCAGCC	1	0.123038758869683	0.704121951840997	0.776581847210919	N	Y	3.42783536197374	3.38552945952599	3.38552945952599	splitr	155	1	0	0	N	1	Y	N	71	0	ENSG00000244752	ENSG00000100058	-	+	22	22	25627836	25916821	coding	intron	CRYBB2	CRYBB2P1	25615489	25844072	+	+	0	25623952	25849400	-	+	N	-	1	N	SKBR3_13_2_1	11	1	4.33333333333333	1	1	2	N	N	0	1	3	0.562892757838837	0.703615947298547	0.703615947298547	0.562892757838837	2	-	0	0.60524179975777
76934	CGGCACCTTTCTGCTTCACCTGGAGAGAAATAAGCC|TACTCCTAATCACATAATCTATTCCCCCGAGCAATCTCTAGTACAATATACACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAAAG	1	0.047969532846077	0.899266171301115	0.897571427984624	N	N	3.664193987158	3.30657751701988	3.30657751701988	splitr	2	0.0555555555555556	0	0	N	2.22044604925031e-16	N	N	21606	31	ENSG00000067225	ENSG00000132570	-	+	15	5	72524163	134343649	coding	intron	PKM2	PCBD2	72491370	134240596	-	+	0.0555555555555556	72502043	134260354	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	8	0	6	4	2	1	N	N	0	0	2	0.60428193120934	0.827783467410055	0.827783467410055	0.60428193120934	2	-	1	0.60524179975777
132076	ACCCCATGGGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA|CAAGGAGGCGGCACAGCTGCGGGAGGAGCGGCTACGGCAGTACGCGGAGAAGAAGG	5	0.0274494526642904	0.177954356965562	0.143296801154224	N	N	1.79142323228074	3.10968340772996	1.79142323228074	splitr	19	0.178571428571429	0.0892857142857144	0	N	0.214285714285714	N	N	2	176	ENSG00000017483	ENSG00000254741	+	+	X	8	48328644	144662840	utr3p	intron	SLC38A5	RP11-661A12.7	48316920	144661806	-	+	0.178571428571429	48317050	144662784	-	+	Y	-	-	N	SKBR3_13_2_1	38	0.847457627118644	26.5	15	2	1	N	N	0.847457627118644	0	2	0.488392245771932	0.653948939253943	0.653948939253943	0.488392245771932	1	-	-	0.60524179975777
76266	TTCCTTTTCAATGGAAGCCTGCACAGCCCGAGGGTCTGAAGGGTCCACAGCCACAGCCAGCTGGGCCTGGGTGTCGATGATGAGGTAGCTGTAGTTGTCCGAGAGGACAGGGATGGGAAGCAC|GGGGATGACCTGCGGCGCACAAAGACTGAGATCTCTGAGATGAACCGGAACATCAGCCGGCTCCAGGCTGAGATTGAGGGCCTCAAAGGCCAGAGGGCTTCCCTGGAGGCCGCCATTGCAGATGCCGAG	1	1	0.375556752806067	0.399915574091196	N	N	3.5816815158199	3.40740634961144	3.40740634961144	splitr	10	0.0813008130081302	0.0813008130081302	0	N	0.097560975609756	N	N	1514	64916	ENSG00000127838	ENSG00000170421	-	-	2	12	219211516	53298868	coding	coding	PNKD	KRT8	219135115	53290971	+	-	0.0813008130081302	219204760	53293651	-	+	Y	-	-	N	SKBR3_13_2_1	8	0	5.5	3	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	4	-	-	0.60524179975777
105034	GGCATGATGGCAAGGGACAAAGCTACAACTTGGCCTGTGCCTTTGGAAGCTGAGGCAGGAGGACCATCTGAGCCCAGGAGCCTGAGACCAGCCTGGGCAACATAGAGAATCCGTCTCAACAAAAAAAAAATTTTAGCCAGGTGTGCTGTGAGCTGTAGTCCCAGCTACAAGGTGGGAGGATTGCTTAGGCCTGGGTGATTGAGGATGCAATGAGCTGTGATTGTGCCACCACACTCCAGCCTGGGCAATACAGCAAGACTGTCTC|AAAAAAAAAAAAAAACCCAAAAATCATCAATACTAAAAGAATACACC	1	1	0.947341838102727	0.917599595447558	N	Y	3.46973068926756	2.2938958234657	2.2938958234657	splitr	23	0.48936170212766	0.425531914893617	0	N	0.48936170212766	N	N	1086	350	ENSG00000181350	ENSG00000034677	+	+	17	8	16395467	101348446	intron	intron	C17orf76	RNF19A	16344891	101269288	-	-	0.48936170212766	16344908	101280918	-	-	Y	-	-	N	SKBR3_13_2_1	44	0.82142857142857	24	12	3	1	N	N	0.82142857142857	0.42	3	1.24167520111508	0.413891733705027	1.24167520111508	0.413891733705027	2	-	-	0.60524179975777
141402	CTGCCCTGCCGAGCGCGCCCAGTCCGCGAATCCGGTGCTTTCTTGCCCCAGGAAGAAGCCGTGTCGGGGCTGCGCTGACAGAGGAGCAGGCAGCAG|AAAATACAGTAGCAGCCATGATAGAAGACAAAGGACCAAGAGTGACAGACTACTTTGTCGTAGCTGGTCTCACTGACACATCTACTCTTTTGGATCAAGAAATAAATCGTTTAGATACTAAGTCAACTGGACCTAAAGCTCCAATTACAGACATTGCCATTATTATCAAATCAGCTGGAGAAACA	9	1	0.260411152970987	0.479956270829138	N	Y	3.26352956157612	3.24165267149067	3.24165267149067	splitr	281	1	0	0	N	0.385416666666667	Y	N	0	0	ENSG00000223256	ENSG00000242215	+	-	9	9	141150148	19336492	upstream	upstream	U6.928	RP11-513M16.2	141150045	19276173	+	+	0	19230831	19276156	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	5	0.612559765883441	1.67212260416831	1.67212260416831	0.612559765883441	4	-	-	0.60524179975777
54819	CCGGGATGAATGCCTGGCTCCCCCTTCTTTCCAGCCCTAGCTCAGGCCCATCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCC|CCACTAAAACACTTACCAAGACCTCAACCCCTGACCCCCATGCCTCAGGATACTCCTCAATAGCCACCGCTGTAGTATATCCAAAAACAACCATCATTCCCCCCAAATAAATTAAAAAAACCAT	3	0.96986908066308	0.468195265123822	0.766610165601278	N	N	3.19971749140349	2.92503764812655	2.92503764812655	splitr	9	0.0161290322580646	0.0161290322580646	0	N	0.0241935483870968	N	N	83603	0	ENSG00000130600	ENSG00000249119	-	+	11	5	2022700	134260334	intron	intron	H19	MTND6P4	2016406	134259813	-	+	0.0161290322580646	2018909	134260095	+	+	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.438725237727329	0.430447403053228	0.438725237727329	0.430447403053228	2	-	0	0.60524179975777
7748	ATTATAGCCATCCCCACTGCCACCATATCCACCACCACCACGGCTGCCACCAAAGCCACCACGACCACTGAAGTTTCCTCCACGACCGAAGTTGTCATT|GCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCC	1	1	0.375556752806067	0.399915574091196	N	N	3.54400240599166	3.39397124202697	3.39397124202697	splitr	19	0.0303030303030303	0.0202020202020201	0	N	0.0707070707070708	N	N	12277	3	ENSG00000135486	ENSG00000230021	-	-	12	1	54679028	659930	coding	intron	HNRNPA1	RP5-857K21.4	54674488	536816	+	-	0.0303030303030303	54676410	569313	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	54	0.6	37	20	2	2	N	N	0.6	0	2	0.786394294039552	0.687060277950346	0.786394294039552	0.687060277950346	1	-	0	0.60524179975777
135837	GGATGCCGTCGGACTTGGTGATCTTCACCAGGCAGTCTCCCAGGCCTCGGAACTCGCGCTCTGTGCCTGACT|TTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGACTTGGCGGAATCAGCGGGGAAAGAAGACTCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACGTGAGAG	2	0.694882012992438	0.467754455729131	0.686272108117709	N	N	3.46973068926756	3.42680229220385	3.42680229220385	splitr	12	0	0	0.333333333333333	Y	0.0416666666666665	N	N	8986	0	ENSG00000169100	ENSG00000226958	+	-	X	X	1511626	108297792	coding	intron	SLC25A6	RN28S1	1505045	108297361	-	-	0	1508292	108297523	+	-	N	3.00586971073411	1	N	SKBR3_13_2_1	10	1	5.33333333333333	3	3	1	N	N	0	1	3	0.778116459365451	0.76156079001725	0.778116459365451	0.76156079001725	1	334.333333333333	0	0.60524179975777
73937	GGAATTGCATCTGTTTTTAAGCCTAATGTGGGGACAGCTCATGAGTGTAAGACGTCTTGTGATGTAATTATTATACGAATGGGGGCTTCAACCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCAGGTCGCCTGGTTCTAGGAATAATGG|AATAGGACCGCGGTTCTATTTTGTTGGTTTATGGAACTGAGGCCATGATT	3	0.41285610003792	0.436578576314888	0.647910697103573	N	N	3.76951977068882	3.61360747730288	3.61360747730288	splitr	28	0	0	0	N	0.18	N	N	3	1	ENSG00000230021	ENSG00000256642	-	-	1	16	659930	33962503	intron	upstream	RP5-857K21.4	NCRNA00273	536816	33961052	-	-	0	568509	33963365	-	-	Y	0.828962371721779	-	N	SKBR3_13_2_1	4	1	3.5	3	4	1	N	N	0	1	4	0.90228397947696	0.869172640780558	0.90228397947696	0.869172640780558	2	0	-	0.60524179975777
108913	AACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCT|CCACCACACACCACCTGTCCAAAAAGGCCTTCGATACGGGATAATCCTATTTATTACCTCAGAAGTTTTTTTCTTCGCAGGATTTTTCTGAGCCTT	2	0.0325348019228534	0.332952788415832	0.5	N	N	3.22064101730576	3.42936294528359	3.22064101730576	splitr	5	0	0	0	N	0.18	Y	N	54817	33743	ENSG00000198786	ENSG00000198938	+	-	MT	MT	14148	9990	coding	coding	MT-ND5	MT-CO3	12337	9207	+	+	0	14050	9413	+	-	N	-	-	N	SKBR3_13_2_1	4	0	3.33333333333333	2	3	3	N	N	0	0	3	0.76156079001725	0.894006144802859	0.894006144802859	0.76156079001725	1	-	-	0.60524179975777
56704	CCTCTGTCCTGTGTCCCCTGCCATGTCCCTGTCTGACCCAGGCCTGGGGTACCACCCCACGTGCTGGACCCTACGCTGGCCACCCCTGTGCTCCCTCCCTGC|CCTCACACTCATTCTCAACCCCCTGACAAAACATATAGCCTACCCCTTCCTTGTACTATCCCTGTGAGGCATAATTATAACAAGCTCCATCTGCCTGCGACAAACAGA	1	0.532692861392658	0.375556752806067	0.399915574091196	N	N	3.02188845513875	3.2729561383577	3.02188845513875	splitr	4	0	0	0	N	0	N	N	83603	31	ENSG00000130600	ENSG00000132570	+	+	11	5	2022700	134343649	intron	intron	H19	PCBD2	2016406	134240596	-	+	0	2018415	134262992	+	+	Y	0.802117543207304	1.2575464834446	N	SKBR3_13_2_1	2	0	2	2	2	3	N	N	0	0	2	0.827783467410055	0.44700307240143	0.827783467410055	0.44700307240143	1	2937.5	1	0.60524179975777
134549	TTCTTCCTCCTCCTCTTCCTCCCCACCTTCTTCCTCTTCTTCGTCTACCTCATTGTCAGCCTCCTGCTCCCCATTTTCCTCATTAGCATTCCCGTTAGCAGGGGCGTCTCTTCCATTTTCTGCCTCTTCCACAACTTCCT|TCTTCTCCTTACACCTAGCAGGTATCTCCTCTATCTTAGGAGCCATCAATTTCATCACAACAATTATTAATATAAAACCCCCTGCCATAACCCAATACCAAACGCCCCTTTTCGTCTGATCCGTCCTAATCACAGCAGTCTTACTTCTCCTATCTCTCCCAGTCCTA	1	0.477688787812265	0.407347078523834	0.444997527706131	N	N	3.2280098772435	3.29756151539224	3.2280098772435	splitr	10	0	0	0	N	0.0642857142857143	N	N	14698	0	ENSG00000187514	ENSG00000237973	-	-	2	1	232578251	567996	coding	intron	PTMA	RP5-857K21.6	232571605	566454	+	+	0	232576074	566893	-	-	Y	-	1	N	SKBR3_13_2_1	21	0.356589147286822	20.5	20	2	1	N	N	0.356589147286822	0	2	0.827783467410055	0.463558741749631	0.827783467410055	0.463558741749631	0	-	0	0.60524179975777
94238	CCGCGAGGCCCGCCTTGGCCACGGGCTCTGGAGGCCAGTGCCTCCCGCTCGCCGCCCGCTGCGCTCCTCACCCCTGCCTGCACCATCCTCCCTCCTGAGAGCTCATTCACTCCGCCCCGCCCGCCTCGCCTAGTCTGGTCTCGCCCCATGCCCTTGACTCCCCTGGATGCTGTACTGTCTGCCAAGCCAGCCCCAGGGGCTGAGCGGTGAGGGCATACAGCGTCACCAAGTCCACTGTGGGCCCTCTCCGCACCAGACCCTGGGCCGCAGTGCCTCGTGGGACCGGCGCCCGCAGGCCGAGCCCCTGCAGCCTCCTTGCTGCGCAATGTCCCGGGGCCCC|CCCCCCTTGCCTGCCCGCTGCCCCCGCCTCCTCCGCCTGAATGACCCGACTGGAATCCACTCTAACCAATCGCACTTAACGACTCGGGCCACCACTGGGGGGGCAGGGG	1	8.30279108905066e-05	0.447538936456759	0.5	N	N	3.12015663465057	2.45834590065356	2.45834590065356	splitr	2	0.018348623853211	0.018348623853211	0	N	0.0275229357798163	N	N	83603	7812	ENSG00000130600	ENSG00000108774	-	+	11	17	2022700	40307022	intron	utr3p	H19	RAB5C	2016406	40276998	-	-	0.018348623853211	2018137	40277799	+	+	Y	-	0.764606944685985	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.438725237727329	0.827783467410055	0.438725237727329	2	-	460.5	0.60524179975777
128653	CCCAAGAAATGCAGCCACAGTCCATCTCTCTTTTTTCTCTCCTTCCGGGGGACCAAGGTACCTTCTGGGGCATACAACATGGCAGCAGGGCCTCGGGAAGAGGGGTAGGAGGACCGAGCAGCATTCTCTGTAGAGGAAGACAGGAAAGGAGACCCTCTTG|AGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCATGGTGAAGAGACATGAGAGGTGTAGAATAAGTGGGAGGCCCCTGG	2	0.631196310349899	0.332952788415832	0.5	N	N	3.51360402781852	3.43614916339873	3.43614916339873	splitr	0	1.11022302462516e-16	1.11022302462516e-16	0.5	N	1.11022302462516e-16	N	N	1898	0	ENSG00000118640	ENSG00000137571	-	+	2	8	85809154	70747299	utr3p	intron	VAMP8	SLCO5A1	85788685	70584568	+	-	1.11022302462516e-16	85808901	70602422	-	+	Y	-	1	N	SKBR3_13_2_1	3	1	2	1	1	1	N	N	0	1	2	0.546337088490636	0.44700307240143	0.546337088490636	0.44700307240143	1	-	0	0.60524179975777
116454	CTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCCTAGCCATGTGATTTCACTTCCACTCCATAACGCTCCTCATACTAGGCCTACTA|GGAGAACTCTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAGTCACAGCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAAACCCTCATTCACACGAGAAAACACCCTCATGTTCATACACCTATCCCCCATTCTCC	1	0.321093418530596	0.375556752806067	0.399915574091196	N	Y	3.3756482219978	3.7753034242576	3.3756482219978	splitr	301	1	0.0645161290322581	0	Y	0.118279569892473	N	N	33743	93473	ENSG00000198938	ENSG00000198886	+	-	MT	MT	9990	12137	coding	coding	MT-CO3	MT-ND4	9207	10760	+	+	0	9350	11888	+	-	N	-	0.818754118982995	N	SKBR3_13_2_1	4	0	4	4	3	1	Y	N	0	0	3	0.413891733705027	0.60428193120934	0.60428193120934	0.413891733705027	1	-	4511.66666666667	0.60524179975777
125393	AGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTGGTTGCCCCTCGGTTCCCC|ACTTCCTTAATTCCCCCGATCATTGCCACCTTCATCAACCCTAACAAAAAGAGTTCATACCCCCACTATGTAAAATCAATTATTGCATCCGCCTTTATTATTAGCCTCCTCCCCACAACAATATTCATATGCCTAGACCAAGAAGTTATTATCTCAAACTGACACTGAGCAACAACCCAAACAATACAACTCTCG	3	0.816249229079358	0.164413232160905	0.272111350502762	N	N	3.1432166581095	3.31592438821476	3.1432166581095	splitr	18	0	0	0	N	0	N	N	83603	0	ENSG00000130600	ENSG00000241109	-	+	11	5	2022700	99384560	intron	downstream	H19	AC113407.8	2016406	99384490	-	-	0	2019018	99384453	+	+	Y	-	-	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.60428193120934	0.827783467410055	0.60428193120934	1	-	-	0.60524179975777
77621	TAGCCATCGCTGTAGTATATCCAAAGACAACCATCATTCCCCCTAAATAAATTAAAAAAACTATTAAACCCATATAACCTCCCCCAAAATTCAGAATAATAACACACCCGACCACACCGCTAACAATCAATACTAAACCCCCATAAATAGGAGAAGGCTTAGAAGAAAACCCCACAAACCCCATTACTAAACCCACACTCAA|TCACACTACTCCCCATATCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAACCCACCCCATTCCTCCCCACACTCATCGCCCTT	1	1	0.612610548302747	0.693969709788871	N	N	2.7727589303836	3.0448781205808	2.7727589303836	splitr	10	0	0	0	N	0	Y	N	19641	24767	ENSG00000198695	ENSG00000198763	-	-	MT	MT	14673	5511	coding	coding	MT-ND6	MT-ND2	14149	4470	-	+	0	14652	5374	+	-	N	-	-	N	SKBR3_13_2_1	8	0	5	2	4	2	N	N	0	0	4	1.21684169709278	1.07611850763307	1.21684169709278	1.07611850763307	2	-	-	0.60524179975777
140346	CTGTAACCAAAAGTGACCGGGATGAATGCCTGGCTCCCCCTTCTTTCCAGCCCTAGCTCAGGCCCATCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCA|CCAGCCTGCCCCTCCTGCGGCTGCCCCAGAGCCCAGCGGGGGAGGCTGCTGTGCAGGGTAGCACAGGGAACGGGAGACCCACCTGAGGCTCAGCCCTAGCCCTCAACCCACCTGCGGGGGAGTTTACTGCCTAGGGACCCCCCTTGCCCATGCCTCCAGCTACAAAACAATTCAATTGCTTTTTTTTTTTGGTCCAAAATAAAACCTCAGCTATCTCTGCCAAAAAAAAAA	4	0.000420542053952482	0.127420665977195	0.236981675237048	N	N	3.13271292596536	2.8673799538833	2.8673799538833	splitr	16	0.034965034965035	0	0	N	0.0279720279720278	N	N	83603	0	ENSG00000130600	ENSG00000158163	+	+	11	3	2022700	137834660	intron	intron	H19	DZIP1L	2016406	137780832	-	-	0.034965034965035	2018887	137820300	+	+	Y	1.51477136112092	1	N	SKBR3_13_2_1	18	0	4.63636363636364	3	11	1	N	N	0	0	11	1.11750768100357	0.662226773928044	1.11750768100357	0.662226773928044	2	1326.63636363636	0	0.60524179975777
140831	CACGTTGTTCTCAGGGTTGCTGCGGGTCTTTGAATGACAAACTATGTTGACAGCATCCTGCTGGGCCTGCAGCCTGGTGGGTAAGAAGTCTCCATTCCGCATATACTCACTGTTGTCCACACACACCATAGTGCTTTCCAACACCATCTTGCCACCTTCCTCCCTCCCGACC|GCCCATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATAT	1	1	0.612610548302747	0.693969709788871	N	N	3.08462336994882	2.84277457684876	2.84277457684876	splitr	22	0.00666666666666671	0.00666666666666671	0	N	0.0133333333333333	N	N	2114	3	ENSG00000159352	ENSG00000230021	-	-	1	1	151239955	659930	utr5p	intron	PSMD4	RP5-857K21.4	151227179	536816	+	-	0	151227234	569034	-	-	N	-	0.828962371721779	Y	SKBR3_13_2_1	8	0	3.83333333333333	3	6	1	N	N	0	0	6	0.960228822195664	1.05128500361077	1.05128500361077	0.960228822195664	2	-	0	0.60524179975777
77992	AAAAATACAAAAATTAGCTGGGCGTGGTGG|TGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCATGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGACAGCGCCATTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAATAGTGCAC	1	0.133323857223632	0.447538936456759	0.5	N	Y	3.14075065099086	3.40847927217468	3.14075065099086	splitr	192	0.533333333333334	0.733333333333334	0.5	N	0.5	N	N	480	653	ENSG00000121039	ENSG00000099940	-	-	8	22	74237516	21245502	utr3p	utr3p	RDH10	SNAP29	74206847	21213271	+	+	0.4	74236037	21244915	-	-	Y	-	-	N	SKBR3_13_2_1	190	1	143	96	2	1	N	N	1	0.955801104972376	2	0.496670080446033	0.827783467410055	0.827783467410055	0.496670080446033	1	-	-	0.60524179975777
141645	ACTGAATAATCTACACAGGGCATCCTTCAAAGGCTACAATTAAGGATCCACCTAACTTTTCAGCAATACAAGCCCGATTGAGATCTTCTGGTCCATTTGCTTGACATTCATGTTTTATGCCTTGAAATTTCTTTTTAATTGCATCCTTGGAGCTTGCATAGATCATTTTACTTTTCAGAGGTGCTAGTTCTGGT|GCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCA	1	1	0.526775457519482	0.600084425908804	N	N	3.50425715662364	2.92291807542428	2.92291807542428	splitr	6	0.0549450549450547	0.0439560439560441	0	N	0.0439560439560441	N	N	12408	3	ENSG00000125868	ENSG00000230021	-	-	20	1	17588887	659930	coding	intron	DSTN	RP5-857K21.4	17550508	536816	+	-	0	17585203	568257	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	0	0.60524179975777
131184	GGCCTGGAGGCGCTCTTCACGGCGCTTGCGTGCTTCCTTGGTCTTAGACCTGCGGGCCTCAGCCTGGTCAGCCAGGAGCTTCTTGCGGGCCTTGTCTGCCTTCAGCTTGTGGATGTGTTCCATGAGAATCCGCTTGTTTTTGAACACATTCCCCTTCACCTTCAGGTACAGGCTGTGATACATGTGGCGATCG|ATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACCCACTAATAGGGAACGT	1	0.0246445127151409	1	0.935920242646516	N	N	3.83593234673454	3.70512929149291	3.70512929149291	splitr	6	0.00518134715025909	0	0	N	0.0207253886010362	N	N	129759	0	ENSG00000108298	ENSG00000162669	-	+	17	1	37360980	91870426	coding	intron	RPL19	HFM1	37356536	91726323	+	-	0.00518134715025909	37359351	91853019	-	+	Y	-	1	N	SKBR3_13_2_1	18	1	9.6	2	5	2	N	N	0	1	5	1.04300716893667	1.20856386241868	1.20856386241868	1.04300716893667	2	-	0	0.60524179975777
141670	GGAAGTGGTAGGGGACTCGGGAAGGGTTGGTGTTCATCCGCTTGCGGAGGAAAGCCAGGTACTTCAACTTGTTTCTGTAGAAATTGCCAGAAATGTTGATGCCTTCACAGCGTACAACCACCACCTTCCGGCCCAGCAGTACCTGTTTAGCCACGATGGCCGCCAGGCGGCCCAGGAGATGGCCTCGACCATCAAGCACCAGGACCTG|CACCTCCACCAGCTCCTCCATCACCAGTTCCATCCCTGACACAGAGCGTGAGTGTCCCAC	1	1	0.447538936456759	0.5	N	N	3.49015970162987	3.12010320148808	3.12010320148808	splitr	21	0.116666666666667	0.0833333333333335	0	N	0.216666666666667	N	N	0	1990	ENSG00000236552	ENSG00000145191	-	-	10	3	98510675	184402546	intron	intron	RPL13AP5	EIF2B5	98510045	183852826	+	+	0.116666666666667	98510057	183884717	-	-	Y	1	35.7625186106196	N	SKBR3_13_2_1	10	0	9.5	9	2	1	N	N	0	0	2	0.480114411097832	0.488392245771932	0.488392245771932	0.480114411097832	2	0	0.5	0.60524179975777
141227	AGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACT|AAAAAAAAAAAAGGCAGCACAAGTGGCAATAGGGAGATACA	8	1	0.046328107468559	0.0910071316110105	N	N	3.23999710710482	2.90509891650488	2.90509891650488	splitr	35	0.268292682926829	0.268292682926829	0	N	0.414634146341463	N	N	14698	543	ENSG00000187514	ENSG00000143207	+	+	2	1	232578251	176176629	utr3p	intron	PTMA	RFWD2	232571605	175911248	+	-	0.268292682926829	232577586	176039482	+	+	Y	-	1.28704220853507	N	SKBR3_13_2_1	160	0.773584905660377	64	8	3	1	N	N	0.247524752475248	0.773584905660377	3	1.11750768100357	0.438725237727329	1.11750768100357	0.438725237727329	2	-	13	0.60524179975777
141177	GCTCTCATCCTCTCCTATTTATACAGTGAAGCCCATGGCAAATAGGAAGAAGCTCAGTATCGGCTCCTCCCACCATAACCCCCACTTCCTCCACTGCCTCCTGGACCATAGTTTCCTCCACCATATGGTCCCCCCATGTTCCTGCTACCACCAAAGTTTCCACTCTTCATTGGACCGTAGTTAGAAGGTTGCTGGTTATAATTTCCAAAATCATTGTAATTTCCACTTCCATAATTTCCTCCTCCATAGTTGTCATAACCACCTCCGTAGCCCCCACCCTGGTTGCCATATCCAGGTCCTCCACCACCATATCCTCCTCTTCCTCCTC|TACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTC	1	4.32204871040035e-08	0.800133926999915	0.844771979185218	N	N	2.9950608718763	2.80150174417089	2.80150174417089	splitr	15	0.0555555555555556	0.0555555555555556	0	N	0.0555555555555556	N	N	13407	3	ENSG00000122566	ENSG00000230021	-	-	7	1	26241149	659930	coding	intron	HNRNPA2B1	RP5-857K21.4	26229547	536816	-	-	0.0555555555555556	26233284	569011	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	4	0	3	2	4	3	N	N	0	0	4	1.38239839057479	0.91056181415106	1.38239839057479	0.91056181415106	2	-	0	0.60524179975777
112739	GGATTCGGCGCTGGGCTCTTCCCTGTTCACTCGCCATTACTGAGGGAATCCTGGTTAGTTTCTTTTCCTCCGCTGAC|TCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCCTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCTGCCGTTT	3	0.301387255681046	1	0.834052020290186	N	N	3.54872248456702	3.58424216889964	3.54872248456702	splitr	14	0.025974025974026	0	0	N	0.168831168831169	N	N	0	0	ENSG00000141161	ENSG00000226958	+	+	17	X	33516364	108297792	intron	intron	UNC45B	RN28S1	33474836	108297361	+	-	0.155844155844156	33478228	108297582	+	+	Y	1	1	N	SKBR3_13_2_1	8	1	5.28571428571429	3	7	2	N	N	1	1	7	0.852616971432356	1.29962004383379	1.29962004383379	0.852616971432356	2	0	0	0.60524179975777
139144	GTGAGTGTCTCAGTCTAGAGGTACCTCCCTCCCTGGGGGGTCTCAGCTCCTGGAGTCGCAGGCCCTTGGGGCCCCTCTGTGAGATCTCAATGCTGTCTGGGGACCCTAAGAGTTTTCTCACCTGTTCAGTCTCATCTAACCTTCCAATGTCTGATGTTCCTGCCAAATTCCTGCCTGATTCTGGGTCCGTCCTGACCTCCAAAGGTCAGCTTGGTGCTTGAGGTCTCCCTGCTCTTGGTGGCAGTGGTAGCAGCAACAGCAGCAGC|AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCATGCCCCGCA	4	1	0.961195691255898	0.96824072333344	N	Y	3.27973300890302	1.84068293053343	1.84068293053343	splitr	31	0.416666666666667	0.416666666666667	0	N	0.541666666666667	N	N	16903	2731	ENSG00000188643	ENSG00000196498	+	-	1	12	153585644	125052135	utr3p	coding	S100A16	NCOR2	153579362	124808961	-	-	0.416666666666667	153579591	124887094	-	+	Y	-	-	N	SKBR3_13_2_1	9	0.648648648648649	5.5	2	2	1	N	N	0	0.648648648648649	2	0.827783467410055	0.612559765883441	0.827783467410055	0.612559765883441	3	-	-	0.60524179975777
40633	CGAAATGAGGTCTTGTTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGAGC|GATCCCACTATTGATCAGCACAGGAGTTTTGGCTGACCTGGGCTGGCTCACGCCTTCTTAGGCAACCTGGTAATCCCCCACTCCTGGGAGGTCACCATATTGATGCTGAACTTAGTGTGGAGACCCAATCAGCGTAGAGCACTACAGTCCAGAACTCCTGGGCTCAAGCGATCCTCCCGCCTCAGCCTCCCGAGTAGCTGAGACTACATGCTCGCACCA	8	0.937852298145244	0.375882085713715	0.813192124481305	N	Y	3.51952501003312	3.58424216889964	3.51952501003312	splitr	0	0.631578947368421	0	0.75	N	0.280701754385965	N	N	326	356	ENSG00000144645	ENSG00000135297	-	-	3	6	32119072	74218959	utr3p	intron	OSBPL10	MTO1	31699382	74171301	-	+	0.631578947368421	31699684	74197371	+	-	Y	-	4.10535506015777	N	SKBR3_13_2_1	90	1	57	22	4	1	N	N	1	1	4	0.521503584468335	0.480114411097832	0.521503584468335	0.480114411097832	1	-	5	0.60524179975777
140236	GTGTGCCAAGAGGGTCTCCTTTCCTGTCTTCCTCTACAGAGAATGCTGCTCGGTCCTCCTACCCCTCTTCCCGAGGCCCTGCTGCCATGTTGTATGCCCCAGAA|GGCAGGAATAGAGTTGGAGCGGTGCCAGCAGCAGGCGAACGAGGTGACGGAAATTATGCGTAACAACTTCGGCAAGGTCCTGGAGCGTGGTGTGAAGCTGGCCGAACTGCAGCAGCGTTCAGACCAACTCCTGGATATGAGCTCAACCTTCAACAAGACTACACAGAACCTGGC	4	1	0.626600120006932	0.217317742283159	Y	Y	3.51423587000429	3.47076375903745	3.47076375903745	splitr	278	1	0.00961538461538447	0	Y	0.990384615384615	N	N	1898	78	ENSG00000118640	ENSG00000168899	+	-	2	2	85809154	85820535	utr3p	coding	VAMP8	VAMP5	85788685	85811531	+	+	0	85808998	85811616	+	-	N	-	-	N	SKBR3_13_2_1	2	0	1.25	1	1	1	N	Y	0	0	4	0.662226773928044	1.39067622524889	1.39067622524889	0.662226773928044	3	-	-	0.60524179975777
78352	CTTTGAACTCATGGACCAAGCCTAAAACACCTTCCTTCAGCCATTGTATCACGATATCAGAAAGTTTGATGTCAGGTTCAAAAGTGCAGCTCAGGATTCCATCCTCCCCAATGTTCCCAGCTGAGGCGACAGTAGTGACTGTGATGGAGTGTCTCCCTGAAATACCAAAGCCAATGATGAGTGCAATTGCTCCAGCCAGAATAATGATGATGCTAATTATGCTG|GTGAGATGGGCTCCCCAGCCTGCTTCTGGCTCCAGGTGTGTGCTTTTTCAAAGCTGCACATCAACAGAAAGGACGATGATGGAGGATGAAATGTTCCCAATATTTGCTG	2	1	0.628320794780147	0.834131705711819	N	Y	3.40268627103608	3.3184850412945	3.3184850412945	splitr	333	0	1.11022302462516e-16	0	Y	1.11022302462516e-16	N	N	3844	0	ENSG00000134258	ENSG00000233084	-	-	1	1	117753556	249231242	utr5p	upstream	VTCN1	AL672183.2	117686209	249230780	-	+	0	117746242	117767734	+	-	N	-	-	N	SKBR3_13_2_1	2	0	2	2	3	1	N	N	0	0	3	0.943673152847462	0.827783467410055	0.943673152847462	0.827783467410055	1	-	-	0.60524179975777
67863	AATCCTGTTTTTTTATGTCAGATGTTACATATCTCTGCTTCTTTCCTTCGTCATTCTTTATAATAAATTCTCCTCCTCCTTCAGGCAGATGGCTGTATCAGGTTAACTGGAGCAAATGTCATGGAG|CCTGTGGTTTGGTGAGTCCTCCAGGTAACTGTGATGCGGGGGTCAGCGGGAGAGGCACCCGGAAGCTCCCGGCGTCTGCACCCCGGCAGCGCGAGGAAATGCCCAAAGGTGGGTTCTCAGGCGTGGGAAGCTCGACCCTT	4	1	0.330537974952343	0.16438324526142	N	N	3.61464054707278	3.50997045217554	3.50997045217554	splitr	3	0	0	0	N	0	Y	N	799	1989	ENSG00000182307	ENSG00000164823	+	-	8	8	146281416	90940116	upstream	utr5p	C8orf33	OSGIN2	146277764	90914087	+	+	0	80373786	90914246	+	-	N	-	0.0540609518934797	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	0	5	0.844339136758256	1.08439634230717	1.08439634230717	0.844339136758256	1	-	1.8	0.60524179975777
141018	GGGGAGATCTTGTTTGATGAAGTTTTCCATGCCCTGTCCCGCTGCTTAGGCGGGCTGCTTCGGCCCTTCCGAGTGCCTGGATCTTGCATCGACTTCCAGCCTGAGATCTATGTAACTATCCAGGCCTACTCCTCCATCATTGGACTGCAGTCCCACCA|GGTGCTGGTACAGGGCTGCCTCTTGGACCCTTCCCAGCGGGAGGTGTTCCTGCAGCAGATATATGAGCAGCTCTGCCTCTTTGAGGATAAGGTGGCCACCATGCTGCAGCAGCAGTACGATCC	2	1	0.332952788415832	0.5	Y	Y	3.47336426491055	3.44359772892318	3.44359772892318	splitr	281	1	0.00813008130081294	0	Y	0.276422764227642	N	N	64	521	ENSG00000223526	ENSG00000198198	+	-	1	1	43878462	43918321	coding	upstream	C1orf84	KIAA0467	43855553	43886428	+	+	0	43870220	43880752	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	6	1.05128500361077	1.03472933426257	1.05128500361077	1.03472933426257	1	-	-	0.60524179975777
186	CCCAGTTCTGAAGGCCAGAAGTCCGAAATCAAGGTGGCACCAGGGTGGGTTCCTTCTGGGGCTGTGAGGGAAAGCCAGCTCCAGGCCTGTCTTCTGGCTTCTTCCGGTGGTTCCCAGCAATGCTCCGTGTTCCTTGGCTTGCAGAGGTGTCATTCCAATCTCTGCCTTCAGCTGCGTGCAGTGCTCTCCTCCCTGTGTCTGTCTCTTTTTCTCCTC|CTGTATCAGGGAGGGTCCATCTGCAGGAAAAAGACACCACTTTTGCAATTTTAAGGAAAAGGATTAAAACAGGGATTGGCCGGGTGCGGCGATGCGCGCCTGTAGTCCCACTTTTCCGGAGGCTGAGGCGGGAGGATCGCTTGAGCCCGGGGACTCGAGACCAGCCTGGCCAACA	2	0.307379292604388	0.746902376490081	0.902195137443948	Y	Y	2.68849491990972	3.44512531223303	2.68849491990972	splitr	391	1	0	0	Y	1	N	N	171	0	ENSG00000102125	ENSG00000197180	+	-	X	X	153650065	153656795	downstream	downstream	TAZ	BX936347.1	153639854	153656537	+	-	0	153652968	153656474	+	-	N	-	-	N	SKBR3_13_2_1	1	1	1	1	0	1	N	Y	1	0.610062893081761	4	1.31617571318199	1.10922984632947	1.31617571318199	1.10922984632947	4	-	-	0.60524179975777
72856	ACATATCTATCTGCAGCTCCTCCATGTGAAGCCCCTGAAACATACACACCCTGGAACTTTCCTCTCCTTATGCACAGATGGACAGGCTGCCTTCCCCTGTCTCTGGGCTCCCCCAATAGCCAGAATCCCTTCCGACTGGTCCCTTGCCCTGAATATCTGGG|AACCCCCCCCCCCACACACACACCCCGACACACTCATAAACATTAATGAGT	21	0.875364589608306	0.71974493106301	0.941311723478323	N	Y	3.4325554405491	2.43466824451815	2.43466824451815	splitr	33	0.588235294117647	0.588235294117647	0.5	N	0.627450980392157	N	N	6106	31	ENSG00000165272	ENSG00000232938	-	+	9	17	33447609	81188573	utr3p	upstream	AQP3	AC139099.1	33441152	81174666	-	+	0.588235294117647	33441700	13896801	+	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	4	0.521503584468335	0.413891733705027	0.521503584468335	0.413891733705027	1	-	-	0.60524179975777
136583	TACATGACAAGGTGCGGCTCCCTAGGCCCCTCCCCTCTTCAAGGGGTCTACATGGCAACTGTGAGGAGGGGAGATTCAGTGTGGTGGGGGACTGAGTGTGGCAGGGACTCCCCAGCAGTGAGGGTCTCTCTCTTCCTCTTGTGCTCTT|GCTGGTGGTCCCTGCTAGTCAGTGTGGCTCTCTCATTGGAAAAGGTGGATGCAAGATCAAGGAAATACGAGAGGTTAGTG	1	0.82338431127197	0.321839855309698	0.321669634186996	N	N	3.07142165607912	3.32952732966858	3.07142165607912	splitr	11	0.1375	0.1375	0	N	0.15	N	N	62936	6880	ENSG00000111640	ENSG00000197111	-	-	12	12	6647537	53874945	utr3p	coding	GAPDH	PCBP2	6643093	53835525	+	+	0.1375	6647361	53853115	-	-	N	0.277125694650567	1.07775065873552	Y	SKBR3_13_2_1	46	0	24	2	2	1	N	N	0	0	2	0.827783467410055	0.513225749794234	0.827783467410055	0.513225749794234	3	7722	430.5	0.60524179975777
24160	GCCTGGCGACAGAGCAAGACTGCGTCTCAAAAAAAAAAAAAAAAAAA|GTGCTGGAATGTCACAATCAGTCATTCAGCGTCTGTCCAAAGTTCGGTGTTATTAGTAATAAGCAGAGGAAGCAGTCTAACATTGAAGAGCTCAGCTCTGGACCTATACTGACCCAAGTTCAAATCTTGGTTCTGCCATTTCCTAGTTGTGAGACTTCAACAAAGTTTCAAATGCCTCTCTTAGTTTC	1	1	0.800133926999915	0.844771979185218	N	Y	2.64302879770522	3.58953130892846	2.64302879770522	splitr	50	0.574468085106383	0	0	N	0	N	N	32	1483	ENSG00000235725	ENSG00000173153	+	+	2	11	65867311	64084215	intron	intron	AC007389.3	ESRRA	65816700	64073044	-	+	0.574468085106383	65867251	64077708	-	+	Y	-	0.255265984465253	N	SKBR3_13_2_1	79	1	50	21	2	1	N	N	0.519230769230769	1	2	0.430447403053228	0.811227798061854	0.811227798061854	0.430447403053228	3	-	62.5	0.60524179975777
138976	AGGGCAGAGGACCAACATGGGCATTTTGTTCATGAGCAAGGTGGGTCTCAGAGGTGATCGGCGATCAGAGGGCGATGAAGTTCTAGATCCATTGAGACAAGC|ATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACC	2	0.455474139621273	0.196734923242299	0.258789252325421	N	N	3.59421153471047	3.73912139251568	3.59421153471047	splitr	2	0.0196078431372549	0	0	N	0.0392156862745098	N	N	6323	0	ENSG00000198637	ENSG00000212932	-	-	7	21	137198984	48111157	intron	upstream	AC090498.1	RPL23AP4	137198564	48110676	+	+	0.0196078431372549	137198786	9827058	-	-	Y	-	-	N	SKBR3_13_2_1	42	1	23.6666666666667	13	3	1	N	N	0	1	3	0.819505632735954	1.24167520111508	1.24167520111508	0.819505632735954	1	-	-	0.60524179975777
141160	GCTGGTGGTTCTCTCTGTGGCTTCTTCGTAGGGTTCCTCAGCCTCTTCCTCTACCTCATCACCATCCTCATCGTCCTCGTCATCATCGGCTTCTTCTTCTTCCACCTCAGCCA|CTTCTTCCTCCTCTGCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTCCCCCTCCAGCCTCTCCCCCTGCTTCTTCCCCACCCCGGGTCCTGGAGTTGCCAGGAGTCCCAGCAGCTGCGTTTTCTGATGTCCTCA	2	0.554245135879174	0.170189729447764	0.209300629116717	N	N	3.17415359251257	2.12834410746512	2.12834410746512	splitr	42	0.0796460176991152	0.230088495575221	0	N	0.230088495575221	N	N	8411	553	ENSG00000142192	ENSG00000174282	-	+	21	17	27543446	7387517	coding	coding	APP	ZBTB4	27252861	7362685	-	-	0.0796460176991152	27394320	7369834	+	+	Y	-	1.69614310314229	N	SKBR3_13_2_1	1	0.689655172413793	1	1	0	1	N	N	0.689655172413793	0.385714285714286	2	0.720171616646748	0.827783467410055	0.827783467410055	0.720171616646748	2	-	7	0.60524179975777
132343	GGGTGAAGGACATCAATGACCATTTGTTTCCTCTGAAGTAGTCGGTTGGTCATGAACTTTCTAGTGCGGATAGTTACGGTGTCGTTCATGATGGCGATCTATCTTCA|GACAGCCACCCTGGAGGAGAAGAGGAAAGAGAAAGCCAAGATCCACTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGAACATGGAGAAGAAAATTGACAAATACACAGAGGTCCTCAAGACCCACAGACTCCTGGTC	6	0.976597062020705	0.113082474241354	0.262212482223004	N	N	3.6508225788147	2.85847416306589	2.85847416306589	splitr	28	0	0	0	N	0	N	N	25185	0	ENSG00000138326	ENSG00000213885	-	-	10	21	79816570	26734745	utr5p	intron	RPS24	AP001340.2	79793518	26734135	+	+	0	79793642	26734589	-	-	Y	-	1	N	SKBR3_13_2_1	33	0	13.1428571428571	8	7	1	N	N	0	0	7	1.04300716893667	1.16717468904818	1.16717468904818	1.04300716893667	2	-	0	0.60524179975777
138185	GGTGTTTTCAACTTCGATGGTACCCCACTTGGTCTTCCTCCCAAGGATCCTCTTGCCGTTGACCTGGTACTCGTGGTCACTGCCCACCACAGCAAATGGGATCATCTCCCGGAACTTCTCGTTCACCAGCCGGTCCTCCGAGTCCTCATC|GCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTA	2	1	0.170189729447764	0.209300629116717	N	N	3.54503547576155	3.43511609362884	3.43511609362884	splitr	10	0	0	0	N	0.0465116279069769	N	N	9144	3	ENSG00000184640	ENSG00000230021	-	-	17	1	75496674	659930	coding	intron	SEPT9	RP5-857K21.4	75277492	536816	+	-	0	75488757	568365	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.45528090707553	0.596004096535239	0.596004096535239	0.45528090707553	2	-	0	0.60524179975777
139771	GGATGACTCGGATGTCTGGTGGGGCGGAGCAGACACAGACTATGCAGATGGGAGTGAAGACAAAGTAGTAGAAGTAGCAGAGGAGGAAGAAGTGGCTGAGGTGGAAGAAGAAGAAGCCGATGATGACGAGGACGATGAGGATGGTGA|GGAAGAGCTGGCCTACCTGAAGAAGAACCATGAGGAGGAAATCAGTACGCTGAGGGGCCAAGTGGGAGGCCAGGTCAGTGTGGAGGTGGATTCCGCTCCGGGCACCGATCTCGCCAAGATCCTGAGTGACATGCGAAGCCAATATGAGGTCATGGC	1	0.27167062146685	0.447538936456759	0.5	N	N	3.09212808398086	3.30119509103522	3.09212808398086	splitr	8	0.0068027210884356	0.0068027210884356	0	N	0.0408163265306123	N	N	8411	58670	ENSG00000142192	ENSG00000171345	+	-	21	17	27543446	39684560	coding	coding	APP	KRT19	27252861	39679869	-	-	0.0068027210884356	27394266	39681131	-	+	Y	-	-	N	SKBR3_13_2_1	1	0.403846153846154	1	1	0	1	Y	N	0.403846153846154	0	2	0.430447403053228	0.488392245771932	0.488392245771932	0.430447403053228	1	-	-	0.60524179975777
137120	GGGAGCATGACATGCTGCAGGGCCAAAAGGAATGGATAATTAGTATTCCTCTCCTTCTTCCTCACCCTCTCCTTCAACAGAATCCACACCAACCTCCTCATAATCCTTCTCAAGGGCAGCCATATCTTCACGGGCCTCTGAAAACTCGCCTTCCTCCATCCCCTCACCCACGTACCAGTGAACAAAGG|CACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATGACATTCACAGCCATAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACC	2	1	0.808744637905766	0.435742853891277	N	N	3.39124275507788	2.87590144197098	2.87590144197098	splitr	18	0.0336134453781511	0.0336134453781511	0	N	0.0336134453781511	N	N	13870	31	ENSG00000123416	ENSG00000132570	+	+	12	5	49525304	134343649	coding	intron	TUBA1B	PCBD2	49521569	134240596	-	+	0.0336134453781511	49521889	134263458	+	+	Y	2.98863255751628	1.2575464834446	N	SKBR3_13_2_1	15	0	8.4	3	5	1	N	N	0	0	5	1.27478653981148	0.943673152847462	1.27478653981148	0.943673152847462	2	411.2	0.4	0.60524179975777
111290	CGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTGGTTGCCCCTCGGTTCCCCACTTCCCCAGTTTCCC|CCGTTCCTTCCCCGACACCCTCAATTTCCCCATCTCTGATCCTCTAATCTGCCTCTGAACCCATTCACCCTTCACCCTCACTCCTGGTCCCCATACCCAGCATCTAATCATCCATGCCCCCTACTCCTGGCCCCTCCATCCTTTCTTCTCTGGTCCCCATCCCTGTCTCTCCCTTTCACCCTTGCCCTCCAGTCCTCTACCTCTGGCCTGCCCCTATTTCTGAAAGCTTCTTCCAGTCCCTGATCTGGCTCATTCCCCACCTTCAACTCCCACCTTACATGTCTCACACTATCCCATGGTTGGCATTACACTCACTCCTGTTCCCTTATTCTTCATT	1	4.98979058047167e-08	0.375556752806067	0.399915574091196	N	N	2.93279931295247	3.11700399217841	2.93279931295247	splitr	5	0	0	0	N	0	N	N	83603	0	ENSG00000130600	ENSG00000225065	-	-	11	20	2022700	33302432	intron	intron	H19	RP11-346K17.4	2016406	33284722	-	-	0	2019034	33298229	+	-	Y	-	1	N	SKBR3_13_2_1	1	0	1	1	0	3	N	N	0	0	2	0.496670080446033	0.786394294039552	0.786394294039552	0.496670080446033	2	-	0	0.60524179975777
51848	TTGCTCTCGCAGGAGATTCATCACGTGGGTGGTGAACTCGTTGCAGGCCTGCTCGTATTTCTCCAGCTCC|AAGAAGGGATCTATCACCTCTGTACAGGCTATCTATGTGCCTGCTGATGACTTGACTGACCCTGCCCCTGCTACTACGTTTGCCCATTTGGATGCTACCACTGTACTGTCGCGTGCCATTGCTGAGCTGGGCATCTATCCAGCTGTGGATCCTCTAGACTCCACCTCTCGTATCATGGATCCCAACATTGTTGGCAGTGAGCATTACGATGTT	1	1	0.209527252024466	0.160545729398276	N	N	3.72721386824106	3.63399663687184	3.63399663687184	splitr	2	0.0285714285714284	0.0285714285714284	0	N	0.0428571428571428	N	N	6328	26155	ENSG00000185630	ENSG00000110955	-	-	1	12	164854300	57039852	coding	coding	PBX1	ATP5B	164524821	57031963	+	-	0	164761954	57036268	-	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
137005	CTCCTCATCCATGTGACCTTCTCTGGCATTCGGGCATTGGCTGTACCCTTCCGCTTACCTATGCCCATGTGCCTGCCCTTCCGGCGGGCCAAGGTGTTTTTCCGGCATCGAGCCCGGGAATGGACCGT|CACAGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAA	1	0.986096646883214	0.800133926999915	0.844771979185218	N	N	3.47382827322697	3.4780843434859	3.47382827322697	splitr	7	0.065217391304348	0.065217391304348	0	N	0.119565217391304	N	N	129759	0	ENSG00000108298	ENSG00000252318	-	+	17	2	37360980	133038738	coding	intron	RPL19	AC097532.1	37356536	133038647	+	-	0.065217391304348	37358623	133038725	-	+	Y	-	1	N	SKBR3_13_2_1	8	1	5	2	2	3	N	N	0	1	2	0.827783467410055	0.579448427187038	0.827783467410055	0.579448427187038	2	-	0	0.60524179975777
74780	AGTTTCTCTATCAGTTTTGCTGTCTCCTCTTTCTTGAAATTCATGATCGCATCAAACACCTTGAAGATGGGGTCCAGGATCAGCTGGCAGAAGGTGCGTGGCAGCTTCTTCCCTTCGGGGCTGGTGGCTGACTTGCTGAACTTGCCGTTGGCTGGGTCAAAGTACCTGTCACCCCACAGCTTCTTCATCATGTCCTCTACTTTCTTGGCCCGCTCGGCAGGCCCCAACTGGCCCTCCCCCTTGGCGGCGAACTTGGCCACATACATCTCGGCAAACTGCTTCAGGGTGAAGG|GGCTAGCTCGAGGCAGGGCTGGTGGGGCCTGAGGCCAGTGAGGAGTGTGGAGTAGGCGCCCAGGCATCGTGCAGACAGGGCGACATCAGCTGGGGACGATGGGCCTGAGCTAGGGCTGGAAAGAAGGGGGAGCCAGGCATTCATCCCGGTCACTTTTGGTTACAGGACGTGGCAGCTGGTTGGACGAGGGGAGCTGGTGGGCAGGGGTCTGGTGCGGAGAGGGCCCACAGTGGACTTGGTGACGCTGTATGCCCTCACCGCTCAGCCCCTGGGGCTGGCTTGGCAGACAGTACAGCATCCAGGGGAGTCAAGGGCATGGGGCGAGA	1	6.23290976168466e-13	0.254583648908217	0.223418152789081	N	N	3.69681549006792	3.19971749140349	3.19971749140349	splitr	9	0.0273972602739726	0.0273972602739726	0	N	0.023972602739726	N	N	36789	83603	ENSG00000167658	ENSG00000130600	-	-	19	11	3985461	2022700	coding	intron	EEF2	H19	3972316	2016406	-	-	0.0273972602739726	3982370	2018909	+	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	2	N	N	0	0	2	0.45528090707553	0.827783467410055	0.827783467410055	0.45528090707553	1	-	-	0.60524179975777
116264	GGTTGGTGCTGCGATTATCTCCCTCCGCCATCGTCTCGGGGATGCAGTCTCTACAAGCGCAGGCCACCTCCCCAACGAGTCCTCC|TGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCTATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCAT	2	1	0.808744637905766	0.927294411452363	N	N	3.44143830342756	3.10231454779222	3.10231454779222	splitr	4	0.0470588235294116	0.0235294117647059	0	N	0.117647058823529	N	N	1898	3	ENSG00000170540	ENSG00000230021	-	-	16	1	18812917	659930	utr5p	intron	ARL6IP1	RP5-857K21.4	18802991	536816	-	-	0.0470588235294116	18812842	569338	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	5	1	N	N	0	0	5	0.44700307240143	1.05128500361077	1.05128500361077	0.44700307240143	2	-	0	0.60524179975777
107978	CTCTCGGGAGCCGTGGGGCAGAGGCTGCGGAGCCCCAGGAGGGCCGGAGCCCTCATGACTTCAGTGACCTGCTTCTGCCCCTCTAGGTCTATCAGCCACAGTCTCTGCAAGTTTCCAAGAGCAGCAGAAAATGAACACATTGCAGGGG|CCAGTGTCATTCAAAGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGTGGCAACTGGACCCTGATGAGAAGATAACATACGGGGATGTGATGTTGGAGAACTACAGCCATCTAGTTTCCCTGGCTTATGAGGTGGCAACATCTTGTACTTCGGAGATCTGAAGCCGAGCAACTTGCCCAAGTCCTTCTTCTTTTC	1	1	0.899266171301115	0.897571427984624	N	Y	3.28552601004162	3.43681151080804	3.28552601004162	splitr	344	0.993243243243243	0.702702702702703	0.6	N	0.95945945945946	Y	Y	479	2197	ENSG00000128563	ENSG00000196313	+	-	7	7	102067123	72421979	utr5p	utr5p	PRKRIP1	POM121	102004319	72349936	+	+	0.0472972972972975	102006523	72361166	+	-	N	-	-	N	SKBR3_13_2_1	4	0	3.2	3	5	1	N	N	0	0	5	1.06784067295897	1.05128500361077	1.06784067295897	1.05128500361077	4	-	-	0.60524179975777
136495	ATACAAAAATTAGCTGGACATGGTGGCACGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCGTGAACCCGGGCCCGGTGGAGGCTGCAGTGAGACGAGATCGCGCCACTGCACTCCAGCCTGGCGACAGAGCGAGACGCCGTCTCA|AAAAAAAAAAAAAAAAAAATTGTGCTTGCCTCATACATGTAAGCATTTATC	1	0.6758502527496	0.899266171301115	0.897571427984624	N	Y	3.46182746299651	2.7507142064288	2.7507142064288	splitr	211	0.431372549019608	0.431372549019608	0	N	0.450980392156863	N	N	451	310	ENSG00000048544	ENSG00000149179	+	-	6	11	42185603	47185936	utr3p	intron	MRPS10	C11orf49	42174539	46958240	-	+	0.431372549019608	42174976	46965869	-	-	Y	-	2.47891406996165	N	SKBR3_13_2_1	720	1	384.5	49	2	1	N	N	1	0.86	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	2	-	22.5	0.60524179975777
82770	TCACAGCCCTATACTCCCTCTACATATTTACCACAACACAATGG|GCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCACAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAG	1	0.96986908066308	0.899266171301115	0.897571427984624	N	N	3.25103939547889	2.99611686958514	2.99611686958514	splitr	10	0	0	0	N	0.159090909090909	Y	N	93473	38194	ENSG00000198886	ENSG00000198899	+	-	MT	MT	12137	9207	coding	coding	MT-ND4	MT-ATP6	10760	8527	+	+	0	12007	8790	+	-	N	-	-	N	SKBR3_13_2_1	4	0	4	4	2	2	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
136884	CATAAAAGAAATTAGAGTTGGCACTTCCTGCATAAATCCAGAGGTGCCACAGGACAGGGAAGAGCAGGGAACAGACGATGATGATGCAGGTGAGGACAAAGATGTTTCTCAGGAATCTGTAGAGATGGTTCCACACGGGGAAGAAGGCC|CTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACGTGAGAGGTGTAGAATAAGTGGGAGGCCCCCGGCGCCCCCCGGTGTCCCCGCGAGGGGTCCAGGGCGGGGTCTGCCGGCCCTGCGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGGTGAGG	1	1	0.612610548302747	0.693969709788871	N	N	3.70529712536226	3.60376609256805	3.60376609256805	splitr	14	0	0	0.666666666666667	N	0.0738255033557047	N	N	849	0	ENSG00000101464	ENSG00000226958	-	-	20	X	33264910	108297792	coding	intron	PIGU	RN28S1	33148346	108297361	-	-	0.0805369127516778	33169386	108297603	+	-	Y	-	1	N	SKBR3_13_2_1	4	1	2.66666666666667	1	2	1	N	N	0	1	3	1.05956283828487	0.877450475454658	1.05956283828487	0.877450475454658	2	-	0	0.60524179975777
100269	GTTAGGTCTACGGAGGCTCCAGGGTGGGAGTAGTTCCCTGCCAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCGCCGGCCTCCACTATAGCAGATGCAAGCAGGAGTAGGAGAGAGGGGGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGGGAAACGCCATATCGGGGGCACCGATTATTAGGGGAACTAGTCAGTTGCCAAAGCCTCCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAACGTTGTAGATGTGGTCGTTACCTAGAAGGTTG|CCTGCCCCGCCCCCTCGCCGGGCGCCTCCCACCTATTCTACACCTCTCGTGTCTCTTCACCCTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGATTCCGCCAAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGTGCGTCACTAATTAGATGACAAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGTGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATGGCATCAACACCCGC	1	3.32065860938386e-14	0.375556752806067	0.399915574091196	N	N	3.63080414160633	2.90256876864868	2.90256876864868	splitr	4	0	0	0	N	0	N	N	0	356	ENSG00000237973	ENSG00000149262	-	+	1	11	567996	77705724	intron	intron	RP5-857K21.6	INTS4	566454	77589766	+	-	0	566588	77597816	-	+	Y	1	1.69881089015784	N	SKBR3_13_2_1	8	1	8	8	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	0	7.5	0.60524179975777
99941	AGAACACACAGACTTTCTGTGACGCAGACAGAGGGGATGGGGATAGAGGAAAGGGATGGTAAGTTGAGATGTTGTGTGGCAATGGGATTTGGGCTACCCTAAAGGGAGAAGGAAGGGCAGAGAATGGCTGGGTCAGGGCCAGACTGGAAGACACTTCAGATCTGAGGTTGGATTTGCTCATTGCTGTACCACATCTGCTCTAGGGAATCTGGATTATGTTATACAA|AGCAAACATTTTTTTTTTTTTTTTTTTTGCCAAAATTCTTTCTTTGAAATT	1	1	0.612610548302747	0.693969709788871	N	N	3.65657572715995	2.34517787474775	2.34517787474775	splitr	26	0.431372549019608	0.431372549019608	0	N	0.470588235294117	N	N	2374	0	ENSG00000119699	ENSG00000234811	+	+	14	10	76448092	32400717	utr3p	upstream	TGFB3	RP11-241I20.5	76424442	32400572	-	-	0.431372549019608	76425072	32409238	-	+	Y	-	-	N	SKBR3_13_2_1	47	0.363636363636364	35.6666666666667	27	3	1	N	N	0	0.363636363636364	3	0.918839648825161	0.45528090707553	0.918839648825161	0.45528090707553	2	-	-	0.60524179975777
135953	CAGCGACTGGGGAGTCATTTTCCTCCGACGGAGTCACTCTTGGAAGTCACCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCATGAGAATCACTTGAACCCGGGAGGTGGAGGTTACGATGAGCCAAGATCACACCACTGCACTCCAGCCTGTGTGACAGAGCGAGACCCT|CTTCGTGGACTTCAGCACCTCTCTCCTGGGAAGCAGAGGCTGCTGGATGAGCCCAGGGGAGTCCTTGGGTTCTCTGGGTCTCAGCGGCCGCCCAGGCTGTTGGGAGATGCTGCCCTCCATCCGTGATCTGCCAACTCTTTGTGAGTTTCTTCCTGCCTCCTCCCTCAGT	2	1	0.106605727645676	0.0978048625560518	N	Y	3.25566618809842	3.55657227767559	3.25566618809842	splitr	342	1	2.22044604925031e-16	0	N	1	Y	N	2685	18	ENSG00000205336	ENSG00000203451	-	+	16	16	57698944	90233540	utr5p	upstream	GPR56	AC133919.1	57662419	90232651	+	+	0	57662739	57653791	-	+	N	-	-	N	SKBR3_13_2_1	64	0.682080924855491	11.9615384615385	1	16	4	N	N	0.682080924855491	0	26	1.43206539861939	1.40723189459709	1.43206539861939	1.40723189459709	2	-	-	0.60524179975777
65102	GACTTATGGAAACACTGATGGGCCTGAAACAGGGTTCAGTGCCATTGACACTGATGAACGAAACTCTGGTCCAGCCTTGACAGAATCCTTGGTCCAGACCCTGGTGAAGAACAGGACCTTCTCAGGCTCTCTGAGCCACCTTGGGGAGTCCAGCAGTTACCAGGGCACAG|GGTAGGAGCAACGGTGGGAATGCCCTCTGAGGAATGCAGTGATGTCCATCAGTCACCTCTCACCCAGAGCCTGGCAAATTCAGTCTCTTTCACAGAACCTAAAGCCAAGCCAGGTAGGGGCCTAAAGCC	2	0.998092428007784	0.226190941649262	0.313727891882291	Y	Y	3.39168383545536	3.5816815158199	3.39168383545536	splitr	299	1	0.0232558139534883	0	Y	0.0232558139534883	N	N	20564	0	ENSG00000167258	ENSG00000222777	+	-	17	17	37690800	37702497	coding	downstream	CDK12	U6.891	37617739	37702357	+	-	0	37687273	37700501	+	-	N	2.27661232685638	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	2	0.827783467410055	0.504947915120133	0.827783467410055	0.504947915120133	1	265	-	0.60524179975777
141372	CCTTGGACCATAAATTTTTATTGGCAGGTCAGGAGAAGAGCCGGGGGTAAGGGTCCCTTCCTTCCCATCCCTCTACCCAGAAGACACCCTCCAAAGGACAGCAGAAGCCCCAGAGCCTGCTGCCTCAGAGGACCTTGGAGGCAGACAAATTGTTGTAGTGATCTTCCTGTCCCTCGAGCAGGCTGCGGTAGGTGGCAATCTCCTGCTCCAGCCGCGACTTGATGTCCATGAGCCGCTGGTACTCCTGATTCTGCCGCTCACTATCAGCTCGCACATCGCCCAGCTGGGCTTCAAT|GGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGTGGAATCCGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGCCATGAGAAGTG	1	0.00154251003782819	0.390564714822603	0.421349522516249	N	N	3.34785034969775	3.67423639977982	3.34785034969775	splitr	3	0	0	0.5	N	0	N	N	58670	0	ENSG00000171345	ENSG00000198626	+	-	17	1	39684560	238129359	coding	intron	KRT19	RYR2	39679869	237205505	-	+	0	39680165	237766470	+	-	Y	1.83685128438814	1	N	SKBR3_13_2_1	4	1	3.5	3	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	3789.5	0	0.60524179975777
129678	CACAATCCATCATTGAGTGTGTCAAACAGATCTGCGTGGTCATGTTGGAGTCCCCCCCGAAGGGCGTGACCATCCCGTACCGGCCCAAGCCGTCCAGCTCTCCGGTCATCTTTGCAGGTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCCTCAACCCTGACCTGGAGGGACCAC|CTCTAGAGTTGACCAAGCTGCACCAGTAGGCAATGCAACAGGCTTATTTTCCCATGACTC	4	1	0.883957023659923	0.0714734805610415	N	N	3.35253057547976	3.69209541149257	3.35253057547976	splitr	270	0.133333333333334	0.933333333333333	0.5	N	0.933333333333333	N	N	6880	0	ENSG00000197111	ENSG00000248826	+	+	12	5	53874945	91140346	coding	intron	PCBP2	PCBP2P3	53835525	91139695	+	-	0	53858628	91139845	+	+	Y	-	1	N	SKBR3_13_2_1	4	0.537037037037037	4	4	2	1	N	N	0	0.537037037037037	2	0.463558741749631	0.44700307240143	0.463558741749631	0.44700307240143	4	-	0	0.60524179975777
100213	CGGTTGTTTTCTATTAGACTATGGTGAGCTCAGGTGATTGATACCCCTGATGCGAGTAATACGGATGTGTTTAGGAGTGGGACTTCTAGGGGATTTAGCGGGGTGATGCCTGTTGGGGGCCAGTGTCCCCCTAGTTGGGGGGTGGGAGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAATCCTGCGAAGAAAAAAACTTCTGAGGTAATAAATAGGATTATCCCGTATCGAAGGCCTTTCTGGACAGGTGGTGTGTGGTGGCCTTGGTATGTGCTTTCTCGTGTTACATCGCGCCATCATTGGTATATGG|TTGGCTTTGTTGGCCTTGGATAGG	1	0.66962807899935	0.311204357582937	0.306030290211129	N	Y	3.5246463161926	3.1094940449241	3.1094940449241	splitr	0	0.0833333333333338	0	0.333333333333333	N	0	N	N	3	0	ENSG00000230021	ENSG00000243092	-	+	1	12	659930	34372611	intron	upstream	RP5-857K21.4	AC140847.1	536816	34372314	-	-	0.0833333333333338	569913	34372613	-	+	Y	0.828962371721779	-	N	SKBR3_13_2_1	2	1	2	2	3	2	N	N	0	1	3	1.24167520111508	0.521503584468335	1.24167520111508	0.521503584468335	2	0	-	0.60524179975777
91601	AGGAAACCAAAGGATCTAAAACTGGGGTTTGGGGGAAGGTTTCAGCCTCTCCCCACTCCCCTTGCCCCACACCCTTTACTCCCCAGCCCAGAGAGACGCTGCTTTTACCAGGAAAGACTATTGAAAGATGTTTTATTTTATTTTTCTCTGACCTTTCCATCCTTGAAAAAATGGGGAAAAAAGAAGAAAAAAGACAAAATCGACCATAAAAGACCAAA|AAAAAAAAAAAAAAATCAGAAACTCATTTTCTCATAGTTGTGGAAGCT	1	1	0.800133926999915	0.844771979185218	N	N	2.64731051124821	2.776856514343	2.64731051124821	splitr	30	0.416666666666667	0.416666666666667	0.5	N	0.416666666666667	N	N	6889	0	ENSG00000155506	ENSG00000255697	+	-	5	20	154197167	62959443	utr3p	downstream	LARP1	AL137028.1	154092462	62956710	+	-	0.416666666666667	154194462	42864471	+	-	Y	-	-	N	SKBR3_13_2_1	7	1	5	3	2	1	N	N	0	1	2	0.587726261861139	0.422169568379128	0.587726261861139	0.422169568379128	2	-	-	0.60524179975777
140016	AGGAGTTCTTCCTTTGACGGTGGTGGCTTTTTGCTGGTCTTGGCAGGCTTTT|CCTGGATTATGCAGAGAAAAATGAATCCAAACATTGACTT	1	0.00527274486272298	0.800133926999915	0.844771979185218	N	N	3.01807346525729	3.42424163912411	3.01807346525729	splitr	7	0.175	0.175	0	Y	0.2	N	N	13574	0	ENSG00000110321	ENSG00000241255	-	-	11	11	10830657	33258955	coding	intron	EIF4G2	RP1-89D4.1	10818597	33258554	-	+	0.175	10822339	33258787	+	-	N	-	1	N	SKBR3_13_2_1	9	0	8	7	2	1	N	N	0	0	2	0.463558741749631	0.529781419142435	0.529781419142435	0.463558741749631	2	-	0	0.60524179975777
44429	TCCAAGGCCAACAAAGCCAAGCACATACACAAAATGTCTGAACCTGCGGTTCCTCTCGTACT|CCTCACAATCATGGCAAGCCAACGCCACTTATCCAATGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATGACATTCACAGCCATAGAACTAATCATATTTTATATCTTCTTCGAAA	1	0.365212191967802	0.526775457519482	0.600084425908804	N	N	3.65657572715995	3.60525382308454	3.60525382308454	splitr	0	0	0	0.5	N	0.0806451612903226	N	N	0	31	ENSG00000243092	ENSG00000132570	+	+	12	5	34372611	134343649	upstream	intron	AC140847.1	PCBD2	34372314	134240596	-	+	0	34372655	134263505	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	3	1	2.5	2	2	2	N	N	1	0	2	0.587726261861139	0.827783467410055	0.827783467410055	0.587726261861139	1	-	1	0.60524179975777
129422	GGGGCAGCCCTTGTCATCCAGGTCCACACAGGAGTGGGTGCAGTTGATGGGGCAAGGCTGGCATGCGCCCTCCTCATCTGGAAACTTCCAGATGGGCATGTAGGAGAGGTCAGGTTTCACACCGCTGGGGCAGCGGGCCACGCAGAAGGGAGGGTCCTTATAGTGGGCACAGGCCACACACTGGTCAGCCTCCGGTCCAAAACAGGTCACTGAGCCATTCTGGGGCTGACACTCAGGGTGGCACGGCAAACAGTGCCTGGCATTCACATACTCCCTGGGGAGCCCCTGCA|AGAGCACAAGAGGAAGAGAGAGACCCTCACTGCTGGGGAGTCCCTGCCACACTCAGTCCCCCACCACACTGAATC	1	0.00606082524872058	0.205558172728075	0.155228020814782	N	N	3.43358851031899	3.02592325836586	3.02592325836586	splitr	10	0	0	0	N	0	N	N	74211	0	ENSG00000141736	ENSG00000228232	-	+	17	X	37884915	39647390	coding	downstream	ERBB2	GAPDHP1	37844393	39646386	+	-	0	37872680	39646360	-	+	Y	-	-	N	SKBR3_13_2_1	18	0	10	2	2	1	N	N	0	0	2	0.562892757838837	0.827783467410055	0.827783467410055	0.562892757838837	2	-	-	0.60524179975777
138142	AGTGGCATGATCTCAGCTCACTGCAAGCTCTGCTTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCACCACGCCCAGGAAAGAAAAAAGAAGAAAACAAACCTCCATACGAGAATGGGTCTAAAGGAACTTCCCAAACCTCCATGATTTTGCAGGAAACAAGATAAAGCT|GGTTGGTGGAGAATTTGAACTGGAGATGAACTCTATTATCCAGGATGCTGAGAGTATAATACGCATGACAGAGCTTTTAGAGCACTGTGATGTAACATGTCAAGCAGAAATAGGGAGCATGTTTACAGCCATTCTATGAAAAAGTGTTTGGAATGTACAGACTAGCACAGAAGT	1	1	1	0.935920242646516	N	Y	3.40215706237596	3.42208221362849	3.40215706237596	splitr	375	1	0.017241379310345	0	N	1	N	N	1015	0	ENSG00000225210	ENSG00000223875	+	+	14	22	19695180	16124973	intron	intron	AL589743.1	LA16c-60H5.5	19650018	16100517	+	-	0	19683693	16124971	+	+	Y	-	1	N	SKBR3_13_2_1	24	0.553846153846154	13.8571428571429	4	7	1	N	N	0.553846153846154	0	7	1.34928705187839	1.40723189459709	1.40723189459709	1.34928705187839	1	-	0	0.60524179975777
137913	GACCCGCTGAATTTAAGCATATTTGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAG|GGAAGAGACCAAGAAATAAAACCTCCCACTTTGTCTGTACATACTGGCCTCTGTGATT	1	0.0711749180491817	0.12875022366714	0.0640797573534845	N	N	3.74487454086093	3.41319935075004	3.41319935075004	splitr	7	0.120689655172414	0	0.5	N	0.155172413793103	N	N	0	129759	ENSG00000141161	ENSG00000108298	-	-	17	17	33516364	37360980	intron	coding	UNC45B	RPL19	33474836	37356536	+	+	0.120689655172414	33478174	37360883	-	-	N	1	1.02804391267738	Y	SKBR3_13_2_1	5	1	4	3	2	1	N	N	1	0	2	0.802949963387753	0.579448427187038	0.802949963387753	0.579448427187038	1	0	18036	0.60524179975777
141251	GCTAGGCATGGGAGGGAACAAGGAAAACATGGAACCCAAAGGGAACTGCAGCGAGAGCACAAAGATTCTAGGATACTGCGAGCAAATGGGGTGGAGGGGTGCTCTCCTGAGCTACAGAAGGAATGATCTGGTGGT|AGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAACA	3	0.625646907858401	0.130715914556096	0.197936974829114	N	N	3.53209488171704	3.49384671043534	3.49384671043534	splitr	11	0	0	0	N	0.111111111111111	N	N	31758	0	ENSG00000196262	ENSG00000252318	-	+	7	2	44864163	133038738	utr3p	intron	PPIA	AC097532.1	44836279	133038647	+	-	0	44841044	133038703	-	+	Y	-	1	N	SKBR3_13_2_1	78	1	46.75	6	4	1	N	N	0	1	4	0.951950987521563	0.637393269905742	0.951950987521563	0.637393269905742	1	-	0	0.60524179975777
141651	ACCCTGGTGGCATGCCCGTGTATGTTGGTTTAGCGTTGTCTGCATTGTTCTAGAGTGAAACAGGTGTCAGGCTGTCACTGTTCACACAAATTTTTAATAAGAAACATTTACCAAGGGAGCATCTTTGGACTCTCTGTTTTTAAAACCTTCTGAACCATGACTTGGAGCCGGCAGAGTAGGCTGTGGCTGTGGACTTCAGCACAACCATCAACATTGCTGTTCAAAGAAATTACAGTTTACGTCCATTCCAAGTTGTAAATGCTAGTCT|TTTTTTTTTTTTTTTTTCAAAAAAATGTTGGTTGCAACCTATTAAATTGA	6	0.103112297200556	0.917090258919605	0.985717955052488	N	N	3.56232542602083	2.51325881223348	2.51325881223348	splitr	14	0.28	0.28	0.5	N	0.44	N	N	9025	1045	ENSG00000198668	ENSG00000106608	+	-	14	7	90874617	43966010	utr3p	intron	CALM1	URGCP	90863327	43915493	+	-	0.28	90871915	43965398	+	-	Y	-	5.42675765772407	N	SKBR3_13_2_1	7	0.5	7	7	2	1	N	N	0	0.5	2	0.554614923164737	0.413891733705027	0.554614923164737	0.413891733705027	2	-	1.5	0.60524179975777
140409	CCCCCAGAGGGTGTCTCCATCTTCCCTATTTATTTTCAGCCCTTGAGGGCTTCATTGTAGATCAAAGC|CAATGCCCGAATGCCAGAGAAGGTCACGTGGATGAGGAGAATGAGGATTCTGCACCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATTGATCGCCGCATGTATCACAGCCTGTACCTGAAGGTGAAGAGGAATGTGTTAAAAAACAAGCAGATTCTCATGGAACACATCCACAAGCTGAAGGCAGACAAGGCCCGCAAGAAGCTCCTGGCTGATCAGGCTGAGG	2	0.42459257719368	0.746902376490081	0.0978048625560518	N	N	3.31216283149579	3.4503745994685	3.31216283149579	splitr	11	0.0441176470588237	0	0	N	0	N	N	24283	0	ENSG00000197956	ENSG00000224415	-	+	1	7	153508720	102782386	coding	intron	S100A6	RP11-401L13.4	153507075	102781796	-	-	0.0441176470588237	153507204	102782132	+	+	Y	-	1	N	SKBR3_13_2_1	9	0	8	7	2	1	N	N	0	0	2	0.430447403053228	0.827783467410055	0.827783467410055	0.430447403053228	2	-	0	0.60524179975777
132276	TATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTATTCGTAGGTTCAGTACCATTGATGGCCAATTGATTTGATGGTAAAGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGTAGG|ACTACGAGTTCGACGAGGACGAGGAGTGCAGTGAGGAGGACAGCGGCGCCGAGGAGGAGGAGGACGAAGACGACGACGAGCCGGACGATGATACCCTGGATCTGGGCGAGGTGGAGCTGGTGGAGCCCGGGCTGGGCGTCGGCGGGGAGCG	1	1	0.800133926999915	0.844771979185218	N	N	3.62617734898681	3.26140998887385	3.26140998887385	splitr	0	0	0	0	N	0	N	N	3	979	ENSG00000230021	ENSG00000166233	-	-	1	15	659930	72879692	intron	coding	RP5-857K21.4	ARIH1	536816	72766667	-	+	0	568376	72767003	-	-	Y	0.828962371721779	0.362204910302338	N	SKBR3_13_2_1	2	0.4375	2	2	2	1	N	N	0	0.4375	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	0	9.5	0.60524179975777
66258	CATCCATGTGACCTTCTCTGGCATTCGGGCATTGGCTGTAC|CTGAAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATCCT	21	0.00283746142407202	0.761851561808533	0.610786410161189	N	N	3.59528445727371	3.46807512488172	3.46807512488172	splitr	7	0.146341463414634	0.121951219512195	0	N	0.609756097560976	N	N	129759	0	ENSG00000108298	ENSG00000236762	-	+	17	10	37360980	122893237	coding	intron	RPL19	RP11-159H3.1	37356536	122892604	+	-	0.146341463414634	37359254	122892823	-	+	Y	-	1	N	SKBR3_13_2_1	4	0	3.5	3	2	1	N	N	0	0	2	0.571170592512938	0.819505632735954	0.819505632735954	0.571170592512938	3	-	0	0.60524179975777
132444	GACCGGGATGAATGCCTGGCTCCCCCTTCTTTCCAGCCCTAGCTCAGGCCCATCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGC|ACCTACTCATGCACCTAATTGGAAGCGCCACACTAGCAATATCAACTATTAACCTTCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCTTAATCCAAGCCTACGTTTTTACACTTCTAGTAAGCCTCTACCTGCACGACAACACATAATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCCCATGGCCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCCTAGCCATGTGATTTCACTTCCACTCCACAACCCTCCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGAT	1	1.76873918410516e-06	0.526775457519482	0.600084425908804	N	N	3.32423818963975	3.68953475841283	3.32423818963975	splitr	9	0.0106382978723406	0	0	N	0.0212765957446809	N	N	83603	3	ENSG00000130600	ENSG00000230021	-	-	11	1	2022700	659930	intron	intron	H19	RP5-857K21.4	2016406	536816	-	-	0.0106382978723406	2018852	569578	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	3	7	N	N	0	0	3	0.422169568379128	1.19200819307048	1.19200819307048	0.422169568379128	1	-	0	0.60524179975777
92058	CGTTTAAGAGCAGGATCTCTGAAGACATCCTTATTGACGACAGTTTTGTCCAAGGGGATATCCACAGAGTACCTTGTGGGCATTAGGTGATTGTAGTTATACACTTTCACAAAAGATTTTATCTTTGATCTCTTGGCGATCTTCTTCTTGCCCATGGCAGCTGTCACTTTGCGGGGGTAGCGGTCAATTCCAGC|TCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATCTTGGGAGCGGGTGGGCTAGCGAGCCACAGCC	1	1	0.899266171301115	0.897571427984624	N	N	3.52936639476796	3.36295036923788	3.36295036923788	splitr	15	0	0	1	N	0.0121951219512196	N	N	4264	1	ENSG00000131469	ENSG00000163046	-	+	17	2	41154956	133015542	coding	intron	RPL27	ANKRD30BL	41150446	132905164	+	-	0	41151998	133013131	-	+	Y	-	0.81549815498155	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	2	-	0	0.60524179975777
130769	GAGGTGGGTGAGTAGCTGGGAGAGGTCGGTGAGTAGCTGGGTGACGTTGGCGAATAGCTGGGTGATGTGGGACTATAGTTGGGACTGGTTGGAGAATAGGATGGAGAGGTAGGGGAGTAGGAGGGTGAAGTGGGGGAATAAGAGGGACTCTGGGGTGTGTAGCCCCCAGGAGAGCGGGGCTCGTAGGCAGGTGACGTTGGCGA|CTGCATGCTACTGTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCCGATCACCTCTGAGACCCACCTTGCTCATAAACAAAATGCCCATGTTG	1	0.156290429714857	0.321839855309698	0.321669634186996	N	N	3.42783536197374	3.56654164348642	3.42783536197374	splitr	2	0	0	0	N	0	N	N	3363	8948	ENSG00000181222	ENSG00000229117	-	-	17	12	7417933	56511615	coding	utr3p	AMAC1L3	RPL41	7384721	56510374	+	+	0	7416363	56511393	-	-	Y	0.640419970558494	1.1578924043226	N	SKBR3_13_2_1	14	0.741379310344828	11	8	2	1	N	N	0.741379310344828	0	2	0.480114411097832	0.670504608602144	0.670504608602144	0.480114411097832	2	41.5	2576.5	0.60524179975777
135305	GCTGTGACTGCAGCTCAATCTCAAGACCCTGAAGGGTGCGCCGCAGGTCAGTAACCTCGGACCTGCTCATCTGGAGCTGCTCCGTGTGGCCAGCGACCTCCCGGTTCAATTCTTCAGTCCGGCTGGTGAACCAGGCTT|CAGCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTCACCCTAGCATTACTTATATGATATGTCTCCATACCCATTACAATCTCCAGCATTCCCCCTCAAA	1	1	0.12875022366714	0.0640797573534845	N	N	3.69784855983781	3.37977631118074	3.37977631118074	splitr	6	0.0465116279069767	0.0465116279069767	0	N	0.108527131782946	N	N	58670	0	ENSG00000171345	ENSG00000225972	-	-	17	1	39684560	564813	coding	intron	KRT19	RP5-857K21.9	39679869	564442	-	+	0.0465116279069767	39680650	564680	+	-	Y	-	1	N	SKBR3_13_2_1	4	0	3	2	2	1	N	N	0	0	2	0.827783467410055	0.612559765883441	0.827783467410055	0.612559765883441	2	-	0	0.60524179975777
81391	AGACAGGGCCGCAAGGACAGGCAGGGGGAATGGTCTTTCTCTGTTTCTCTTGGCTAGTGGGGCTGCGGCAAGGATCAATGTTCTGAAGGTTCAGAGACAGGGCAAGAAAAGGGCAGGGGGCTGGCAGGAGGGCTG|CAGACACCCTCCCAGCAGAGGGGCAGGATGGGGGCAGGAGAGTTAGCAAAGGTGACATCTTCTCGGGGGGAGCCGAGACTGCGCAAGGCTGGGGGGTTATGGGCCCGTTCCAGGCAGAAAGAGCAAGAGGGCAGGGAGGGAGCACAGGGGTGGCCAGCGTAGGGTCCAGCACGTGGGGTGGTACCCCAGGCCTGGGTCAGACAGGGACATGGCAGGGGACACAGGACAGAGGGGTCCCCAG	1	0.000745343086398216	1	0.935920242646516	N	N	2.72147687910155	2.87891675579733	2.72147687910155	splitr	10	0.0592592592592593	0.0592592592592593	0	Y	0.0814814814814816	N	N	2866	83603	ENSG00000110108	ENSG00000130600	-	-	11	11	60690915	2022700	utr3p	intron	TMEM109	H19	60681346	2016406	+	-	0.0592592592592593	60689698	2018545	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.471836576423731	0.612559765883441	0.612559765883441	0.471836576423731	2	-	-	0.60524179975777
134661	CAAAGTTGAAGAATGCAAAATGGCTGGCAAAGATCAAAAAAAAAAAAAAAAA|AGCACAAGTAACTAATATGTATCAGTCACAACATAATCCTGGATCATCCCCATACCAAAACCGGATGCTCTTTTAATTTTAAACCCATCATCAGAGAACAAGAGAAAGTAATTTCATTTTACACAAAACAAGATTCACATGTGCCAAAAAAGAAAGACCCAAAAGAAACAAAAACCAAAACCCTAATGCTGACACTGATGGTCAGTACCCTGAACAGTGGCCCAAAGG	4	1	0.922486819675656	0.984163968146632	N	N	2.41547093675233	3.37249557952564	2.41547093675233	splitr	27	0	0.461538461538462	0	N	0.5	N	N	1164	2796	ENSG00000075223	ENSG00000086598	+	+	7	12	80551675	124083116	intron	utr3p	SEMA3C	TMED2	80371854	124069078	-	+	0.461538461538462	80456729	124082395	-	+	Y	-	-	N	SKBR3_13_2_1	26	0	15.3333333333333	3	3	1	N	N	0	0	3	0.44700307240143	1.24167520111508	1.24167520111508	0.44700307240143	2	-	-	0.60524179975777
67571	AGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGGTTAGGCGTACGGCCAGGGCTATTGGTTGAATGAGTAGGCTGATGGTTTCGATAATAACTAGTATAGGGATAAGGGGTGTAGGTGTG|GGGGAGGAAGTGGCTAGCTCAGGGCTTCAGGGGACAGACAGGGAGAGATGACTGAGTTAGATGAGACGAGGGGGCGGGCTGGGGGTGCGAGAAGGAA	1	0.899949484282616	0.612610548302747	0.693969709788871	N	N	3.30228159396759	3.22060116451241	3.22060116451241	splitr	13	0	0	0	N	0.123711340206186	N	N	3	0	ENSG00000230021	ENSG00000245532	-	-	1	11	659930	65213011	intron	intron	RP5-857K21.4	NEAT1	536816	65190245	-	+	0	569471	65190312	-	-	Y	0.828962371721779	1	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	1	0	0	0.60524179975777
45105	TGCGTTCGGCTGTGCTGGGAAGTTGCGTAGACAGTGGCCTCGAGACCCTGCCTGCCTGAGGAGGCCTCGGTTGGATGCGAAGGAGCTGCAGCATC|CAGAGACTATGGAAGAGAGTACCTGGATCTAGTTTATTCCAAAGACAGACAAGCAGTTTGTGCCTCCACTCCAGGATGACTAACTACAACGATTACACGTAAAAAGACAAAAC	2	0.907402398380844	0.51863115005231	0.741210747674579	Y	Y	3.56249325989018	3.5465630590714	3.5465630590714	splitr	208	1	0	0	Y	1	N	N	601	230	ENSG00000178449	ENSG00000139624	+	-	12	12	50514234	50561176	utr5p	intron	C12orf62	LASS5	50505900	50523582	+	-	0	50506081	50558806	+	-	N	-	1.4175039963462	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	4	0.579448427187038	0.90228397947696	0.90228397947696	0.579448427187038	1	-	4.75	0.60524179975777
78377	ATTAAAAAAACTATTAAACCCATATAACCTCCCCCAAAATTCAGAATAATAACACACCCGACCACACCGCTAACAATCAATACTAAACCCCCATAAATAGGAGAAGGCTTAGAAGAAAACCCCACAAACCCCATTACTAAACCCACACTCAACAGAAACA|AAGCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTC	1	0.570262181177575	0.890163976007195	0.89339405474736	N	N	2.72867367237062	2.86791432021661	2.72867367237062	splitr	6	0.0563380281690142	0.0563380281690142	0	N	0.0563380281690142	Y	N	19641	3466	ENSG00000198695	ENSG00000228253	-	-	MT	MT	14673	8572	coding	coding	MT-ND6	J01415.25	14149	8366	-	+	0.0563380281690142	14660	8483	+	-	N	-	-	N	SKBR3_13_2_1	8	0	4	1	3	1	N	N	0	0	5	0.993340160892066	1.14234118502588	1.14234118502588	0.993340160892066	1	-	-	0.60524179975777
129795	GCCCGGTGGGCGCCGGCATCCGCGAGGTCACCATTAACCAGAGCCTGCTGGCCCCGCTGCGGCTGGACGCCGACCCCTCCCTCCAGCGGGTGCGCCAGGAGGAGAGC|GAGCAGATCAAGACCCTCAACAACAAGTTTGCCTCCTTCACAGACAAGGTACGGTTCCTGGAGCAGCAGAACAAGATGCTGGAGACCAAGTGGAGCCTCCTGCAGCAGCAGAAGATGGCTCGGAGCAACATGGACAACATGTTCGAGAGCTACATCAACAACCTTAGGCGGCAGCTGGAGACTCTGGGCCAGGAGAAGCTGAAGCTGGA	5	0.635548644677918	0.214756353182083	0.322848242240702	N	N	3.19975734419684	3.41103992525442	3.19975734419684	splitr	132	0.158878504672897	0.214953271028038	0.25	N	0.457943925233645	N	N	34840	1367	ENSG00000135480	ENSG00000198363	+	-	12	8	52662180	62627199	coding	intron	KRT7	ASPH	52626954	62413115	+	-	0.158878504672897	52627356	62491055	+	-	Y	0.330464082330319	1.15755270340056	N	SKBR3_13_2_1	24	0	14.25	4	4	1	N	N	0	0	4	0.943673152847462	1.27478653981148	1.27478653981148	0.943673152847462	3	608.5	11.25	0.60524179975777
138695	CCTATCCAAGGCCAACAAAGCCAAGCACATACACAAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCATGGTAGCAACACATGGGCAACAACACAAGGGGAACGCAAACAGTAAAACTAACCTGTCTGACATGGATCTAACCATAATGCTTTTAGGGCATGCGCACCGCTGTTGGGTGAATCCATTCTAGTCCGCCTTGCCCTTCGCAAAGAAAAGAGAACTCTCCAGACGCGGTGGATCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGAGGGAGGA|AGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT	1	2.50698743638721e-07	0.311204357582937	0.306030290211129	N	N	3.38193573667635	3.52361324642271	3.38193573667635	splitr	4	0	0	0.710204081632653	N	0	N	N	0	0	ENSG00000243092	ENSG00000162669	+	-	12	1	34372611	91870426	upstream	intron	AC140847.1	HFM1	34372314	91726323	-	-	0	34372883	91852852	+	-	Y	-	1	N	SKBR3_13_2_1	2	1	1.04489795918367	1	11	1	N	N	0.984848484848485	1	245	0.546337088490636	1.24995303578918	1.24995303578918	0.546337088490636	0	-	0	0.60524179975777
115251	AAATTCAGAATAATAACACACCCGACCACACCGCTAACAATCAATACTAAACCCCCATAAATAGGAGAAGGCTTAGAAGAAAACCCCACAAACCCCATTACTAAACCCACA|CTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCC	2	1	0.467754455729131	0.686272108117709	N	N	2.85447921263214	3.09140024049414	2.85447921263214	splitr	14	0.0270270270270272	0.0270270270270272	0	N	0.0720720720720721	Y	N	19641	58402	ENSG00000198695	ENSG00000198712	+	-	MT	MT	14673	8269	coding	coding	MT-ND6	MT-CO2	14149	7586	-	+	0.0270270270270272	14647	7721	+	-	N	11.6983251737039	-	N	SKBR3_13_2_1	8	0	3.5	2	4	1	N	N	0	0	4	0.894006144802859	0.927117483499261	0.927117483499261	0.894006144802859	2	233.25	-	0.60524179975777
57834	CCCTCACAATCATGGCAAGCCAACGCCACTTATCCAGTGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCC|AGCACCACGACCCTACTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCATATCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAACCCACCCCATTCCTCCCCACACTCATCGCCCTT	1	3.4347866559831e-08	1	0.935920242646516	N	N	2.69164756238188	3.38548960673263	2.69164756238188	splitr	4	0.0421052631578949	0.0421052631578949	0	N	0.0421052631578949	Y	N	93473	24767	ENSG00000198886	ENSG00000198763	+	-	MT	MT	12137	5511	coding	coding	MT-ND4	MT-ND2	10760	4470	+	+	0.0421052631578949	11074	5139	+	-	N	-	-	N	SKBR3_13_2_1	4	0	4	4	4	4	Y	N	0	0	4	0.90228397947696	0.562892757838837	0.90228397947696	0.562892757838837	2	-	-	0.60524179975777
136029	GCAGCAGTAGTGGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCTCGGAGACAGAAGGGGAGGAGGAAGGCGACAAGAACGGGGACGGGGGCTGCGGCACCGGGGGCCGTAACTGCAGCGCTGCCAGCTCCAGGGCGGCCTCACCGG|CCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCCCCCTCCTCCTCCTCCCCCTCCTCCTCCTCCCCCTCCCCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT	1	1	0.800133926999915	0.844771979185218	N	N	3.42779550918039	1.5747452755067	1.5747452755067	splitr	94	0.496732026143791	0.496732026143791	0	N	0.444444444444444	N	N	2455	511	ENSG00000182095	ENSG00000100731	+	-	7	14	5465045	71582099	coding	intron	TNRC18	PCNX	5346421	71374122	-	+	0.496732026143791	5352685	71376761	-	-	Y	-	0.375614353199408	N	SKBR3_13_2_1	41	0.785714285714286	25	9	2	1	N	N	0.335570469798658	0.785714285714286	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0.5	0.60524179975777
126865	CCTGCACCATCCTCCCTCCTGAGAGCTCATTCACTCCGCCCCGCCCGCCTCGCCTAGTCTGGTCTCGCCCCATGCCCTTGACTCCCCTGGATGCTGTACTGTCTGCCAAGCCAGCCCCAGGGGCTGAGCGGTGAGGGCATACAGCGTCACCAAGTCCACTGTGGGCCCTCTCCGCACCAGACCCTGGGCCGCAGTGCCTCGTGGGACCGGCGCCCGCAGGCCGAGCCCCTGCAGCCTCCTTGCTGCGCAATGTCCCGG|GCCCCCTACTCCTGGCCCCTCCATCCTTTCTTCTCTGGTCCCCATCCCTGTCTCTCCCTTTCACCCTTGCCCTCCAGTCCTCTACCTCTGGCCTGCCCCTATT	1	0.338215752869519	0.612610548302747	0.693969709788871	N	N	3.37548038812845	2.91502842952237	2.91502842952237	splitr	6	0.0485436893203884	0.0485436893203884	0	N	0.058252427184466	N	N	83603	0	ENSG00000130600	ENSG00000225065	-	-	11	20	2022700	33302432	intron	intron	H19	RP11-346K17.4	2016406	33284722	-	-	0.0485436893203884	2018131	33298344	+	-	Y	-	1	N	SKBR3_13_2_1	1	0	1	1	0	3	N	N	0	0	2	0.827783467410055	0.629115435231642	0.827783467410055	0.629115435231642	3	-	0	0.60524179975777
47512	GTTCAAACTGTCATTTTATTTTTACGTTGTTAGATATAGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGCAGGTAGAAGTAGAGGTTAAGGAGGGTGATGATGGCTATGATGGTGGGGATGATGAGG|ATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACACGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAGACAAGC	2	0.428444504921776	0.572228613671423	0.686272108117709	N	N	2.82031412006683	3.80297331548166	2.82031412006683	splitr	6	0	0	0	N	0.0377358490566039	N	N	0	0	ENSG00000225630	ENSG00000218227	-	-	1	5	566063	177483195	intron	intron	RP5-857K21.8	RP11-889L3.1	565020	177482605	+	+	0	565844	177482905	-	-	Y	1	1	N	SKBR3_13_2_1	24	0	14	4	4	2	N	N	0	0	4	1.18373035839638	1.09267417698127	1.18373035839638	1.09267417698127	2	0	0	0.60524179975777
102820	CGGCGGCGTCCTGACCGCGTCCGACGGGCTGCTGGCGGGCAACGAGAAGCTAACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGCGGCCAACGGCGAGCTAGAGATTCTTGGTGCCACCATTGAGAACTCCAGGATTGTCCTGCAGATCGACAA|CAGCCCCCCCCCCCCCCCCCCCCCCAGCCCTCCTAGCCCTGACACACAGCTGGG	1	1	0.311204357582937	0.306030290211129	N	N	3.72146071989581	1.87533919215343	1.87533919215343	splitr	0	0	0	0	N	0.12962962962963	N	N	58670	0	ENSG00000171345	ENSG00000206737	+	-	17	1	39684560	149224221	coding	upstream	KRT19	RNU1-5	39679869	149224058	-	-	0	39681476	149224294	-	-	Y	-	-	N	SKBR3_13_2_1	6	0.423076923076923	2.8	1	3	1	N	N	0	0.423076923076923	5	0.76156079001725	0.430447403053228	0.76156079001725	0.430447403053228	1	-	-	0.60524179975777
125969	GAAGCTAAGGCTGCGTTGGGGTGAGGCCCTCACTTCATCCGGCGACTAGCACCGCGTCCGGCAGCGCCAGCCCTACACTCGCCCGCGCCATGGCCTCTGTCTCCGAGCTCGCCTGCATCTACTCGGCCCTCATTCTGCACGACGATGAGGTGACAGTCACGGCCCTGGCCAACGTCAACATTGGGAGCCTCATCTGCAATGTAGGGGCCGGTGGACCTGCTCCAGCAGCTGGTGCTGCACCAGCAGGAGGTCCTGCCCCCTCCACTGCTGCTGCTCCAGCTGAGGAGAAGAAA|CTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGC	34	0.00833161262538407	0.0282680758904855	0.0840734886954897	N	N	3.1165493314318	3.74487454086093	3.1165493314318	splitr	17	0	0	0	N	0.223880597014925	N	N	12597	0	ENSG00000137818	ENSG00000141161	+	+	15	17	69748172	33516364	coding	intron	RPLP1	UNC45B	69745123	33474836	+	+	0	69747780	33478209	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	0	1	2	0.827783467410055	0.521503584468335	0.827783467410055	0.521503584468335	3	-	0	0.60524179975777
85074	GGATGATGTGGTGGCTGGTGGTCAACCGTCCGCCGCAGGGGGTGGCCATGAAGATGGAGTCGCCGGTGCGGGGTGGGTGCTGCGGGCGCTGCTGTTCCGATGGTGTCTTTGATGTTGGGCTGATGAGGTCTGGTTCCTCTAGCTTCACCTTCCAGAGCCGATTCCTGAGTCAGGTAGTGCAGTGGTTGTAAAGTGCAGCATATTCATTTCCAAGCTTTCATGTTGTGGGTTCTGGGAGCCCAGAGGGCAGCCATAGTGTGCCGACTCCGTGGAGGAAGTAAAGAAACAGACCCGCTTC|TTGCCACGCGCCCCCGACGACCGCCCGACGTGCATTCCCGATTCCTTTTGGTTCCAAGTCCAATATGGCAACTCTAAAGGATCAGCTGATTTATAATCTTCTAAAGGAAGAACAGACCCCCCA	1	4.36786961794161e-05	0.390564714822603	0.421349522516249	N	N	3.58064844605001	2.95166088921158	2.95166088921158	splitr	6	0.0406504065040649	0.0406504065040649	0	Y	0.065040650406504	N	N	83603	20823	ENSG00000130600	ENSG00000134333	-	-	11	11	2022700	18429972	intron	utr5p	H19	LDHA	2016406	18415935	-	+	0.0406504065040649	2017392	18416144	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
126589	GGTTTTATTTTGGACCAAAAAAAAAAAGCAATTGAATTGTTTTGTAGCTGGAGGCATGGGCAAGGGGGGTCCCCAGGTAGTAAACTCCCCAGGTGGGCTGAGGGCTAGGGCTGAGCCTCAGGTGGGTCTCCTGTTCCCAGTGCTACCCTGCATAGCGGCCTCCTTCCCAGGCTCTGGGGCAGCGCAGGAGGGGTAGGCTGG|GAGGGGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCCCCCCCGCGAAGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGCTACTGGCAGGATCAACC	1	0.000425162097687441	1	0.935920242646516	N	N	3.18718747251292	3.5351195431132	3.18718747251292	splitr	15	0	0	0	N	0	N	N	64916	0	ENSG00000170421	ENSG00000212932	-	+	12	21	53298868	48111157	utr3p	upstream	KRT8	RPL23AP4	53290971	48110676	-	+	0	53291192	9827255	+	+	Y	-	-	N	SKBR3_13_2_1	3	1	3	3	2	1	N	N	0	1	2	0.827783467410055	0.587726261861139	0.827783467410055	0.587726261861139	1	-	-	0.60524179975777
139943	GGGAATGGACCGTCACAGGCTTGCGGATGATCAGCCCATCTTTGATGAGCTTCCGGATCTGCTGACGGGAGTTGGCATTGGCGATTTCATTGGTCTCATTGGGGTCTAACCAGACCTTCTTCTTGCCACAGCGGAGGACACTAGAGGCGAGCCTCTTCTGAAGCCTGAGCATACTCATGGCTGCGGCCGC|ACTACCTACTATCCAGCAAAACCACAGCCAAGGGAACGGGCTTGGTGGAATCAGCGGGG	1	1	0.205558172728075	0.155228020814782	N	N	3.62717056596335	3.30488209984069	3.30488209984069	splitr	2	0	0.0169491525423728	0	N	0.0508474576271185	N	N	129759	0	ENSG00000108298	ENSG00000252967	-	-	17	7	37360980	68527662	utr5p	upstream	RPL19	AC093693.2	37356536	68527589	+	+	0	37356586	68527570	-	-	Y	-	-	N	SKBR3_13_2_1	30	1	22.5	15	2	1	N	N	0	1	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	2	-	-	0.60524179975777
141272	TTTTTCTCAGCATCTTCATCCGCAGACTGCTCGGGGTTCTGCTTGTAGCTTGTGATATGGGACTCGAAATCACGGTTGTATTTTCGGATCTTCTGACGCAAGGTGCTCAGAGCCTTGGCATTGTTCTT|GTTCATCTTTTCTTCCTTTCCCATTCACCTGGCTCAATCCTCCTCCACCACCAGGGGCCTCAAAAGGCACATCA	2	0.511573023291264	0.500617348343985	0.722677365176673	N	N	3.6769648867289	3.03590197174651	3.03590197174651	splitr	21	0.27027027027027	0.27027027027027	0	N	0.283783783783784	N	N	6517	2926	ENSG00000184110	ENSG00000087111	-	+	16	17	28747051	26898546	coding	utr3p	EIF3C	PIGS	28722782	26880405	+	-	0.27027027027027	28725678	26881079	-	+	Y	-	2.13579593751068	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	3	-	121.5	0.60524179975777
35293	GTGAAGGGGAATGTGTTCAAAAACAAGTGGATTCTCATGGAACACATCCTCAAGCTGAAGGCAGACAAGGCCC|GCAAGAAGCTCCTGGCTGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCAGGCAAGTGCCCTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGTTCATCAAGACTTTATCCAAGGAGGAAGAGACCAAG	12	0.117324741116126	0.0867607686139802	0.26380472450776	N	Y	3.45656882819122	3.45400817511148	3.45400817511148	splitr	207	0.95890410958904	0.917808219178082	0	N	0.93150684931507	N	N	88	0	ENSG00000144730	ENSG00000218227	+	-	3	5	57204334	177483195	intron	intron	IL17RD	RP11-889L3.1	57124010	177482605	-	+	0.95890410958904	57168614	177483056	+	-	Y	1.81678592627936	1	N	SKBR3_13_2_1	8	0	5.5	3	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	0.5	0	0.60524179975777
71019	TGATATGGGACTCGAAATCACGGTTGTATTTTCGGATCTTCTGACGCAAGGTGCTCAGAGCCTTGGCATTGTTCTTGTTCATCTTCTTCTTCCCTTC|TCCTAATACTAACTACCTGACTCCTGCCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAATGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATGACATTCACAGCCATAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCCTGGCTATCATCACCCGATGAGGCAACC	1	0.183780521665093	0.254583648908217	0.223418152789081	N	N	3.13845672674079	3.22332965146149	3.13845672674079	splitr	1	0.0103092783505154	0	0	N	0.0721649484536081	N	N	6971	31	ENSG00000205609	ENSG00000132570	-	+	16	5	28415200	134343649	coding	intron	EIF3CL	PCBD2	28390900	134240596	-	+	0.0103092783505154	28412290	134263533	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	6	0	5	4	2	1	N	N	0	0	2	0.827783467410055	0.745005120669049	0.827783467410055	0.745005120669049	3	-	1	0.60524179975777
138401	GCACTCCAGCCTGGGATGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAA|AAAAAAGTTTCTGGCACCTGAACAGGAACTGGTTTCCATCATCAACTCAGAAAGCACTAAAATCTAGGTGGTGATTCAGGGAGGAGCAGGGGAAGACAGCCTCCTATGGTGGCATGAATAAGATGCTTCCAGAACTAGTAGGGAAATAACTAACCTCTTCAGGCTTTATCAGGCCTGGAGGGGAACCTTGCTCATGTTAGCAAGAAAGGTATCCTAGAGA	4	1	0.845699811428604	0.651968193672452	N	Y	2.90406584673499	3.45769518391695	2.90406584673499	splitr	274	0	0.685185185185185	0	N	0.796296296296296	N	N	221	2636	ENSG00000180263	ENSG00000147649	+	-	12	8	95611240	98740998	utr3p	utr3p	FGD6	MTDH	95470525	98656407	-	+	0	95473729	98739729	-	-	Y	-	-	N	SKBR3_13_2_1	60	0.642857142857143	37	14	2	1	N	N	0.642857142857143	0	2	0.579448427187038	0.827783467410055	0.827783467410055	0.579448427187038	2	-	-	0.60524179975777
64899	ACCTGAGTTTGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACTAAAAATACAAA|AATTAGCTGGCGTGGTGGCGGGCACCTGTAGTCCCAGCTACTCAGGAGGCTAAGGCAGGGGAATCGCTTGAACCCGGTAGACGGAGGTTGCAGTGAGCAGAGATCGCACCACTGCACTCTAGCCTTGACGACAGAGGGAGGACTCTGTCTCAAAAACAAAACAAAACAAAACAAAACAAAACAAAGCA	1	0.644474285255931	0.800133926999915	0.844771979185218	N	Y	3.23640338425519	3.5816815158199	3.23640338425519	splitr	257	0.710144927536232	0.246376811594203	1	N	0.159420289855073	N	N	29	122	ENSG00000161405	ENSG00000197121	+	-	17	2	38020441	197792520	utr3p	downstream	IKZF3	PGAP1	37913968	197697728	-	-	0	37916746	197691605	-	-	Y	-	-	N	SKBR3_13_2_1	459	1	442	425	2	1	N	N	1	1	2	0.678782443276245	0.827783467410055	0.827783467410055	0.678782443276245	3	-	-	0.60524179975777
133977	CAGAGTCCCTGGGAGTGTTTCTGTTATTGTGGAGGGAATAGGGGATCTGGGGACAGGGTGGGACGTACCATGGGGACAGGAGGTCACAGAACACACACACACACACACACACACACACAC|ACCTACACCCCTTATCCCTATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTA	2	1	0.51863115005231	0.258789252325421	N	N	1.95206888552891	3.19612376855386	1.95206888552891	splitr	5	0.018348623853211	0.018348623853211	0	N	0.128440366972477	N	N	4909	3	ENSG00000105281	ENSG00000230021	-	-	19	1	47291851	659930	utr3p	intron	SLC1A5	RP5-857K21.4	47278140	536816	-	-	0.018348623853211	47278339	569474	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	4	0	3.5	3	2	1	N	N	0	0	2	0.637393269905742	0.678782443276245	0.678782443276245	0.637393269905742	3	-	0	0.60524179975777
97061	GGAGGCTGAGGCAGGTGGATTACCTGAGGTCAGAAGTTTGAGACCAGCCTGGCCAACATGGTGAAACTCCATCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCAGGCGCCTGTAATCCCAGCTATTCA|GGAGGCTGAGGCAGGCGGATCACCTGAGGTCAGAAGTTCGAGACCAGCCTGGCCAATGTGGTGAAACCCCATTTCTACTAAAAATACAAAAGTTAGCCGG	1	0.814966213807548	0.20555784636729	0.155228020814782	N	Y	3.50848272165904	3.62145727041145	3.50848272165904	splitr	235	0.89	0.77	1	N	0.64	N	N	22	6	ENSG00000144395	ENSG00000196860	+	-	2	14	197628214	58875419	intron	intron	CCDC150	TOMM20L	197504278	58862634	+	+	0.84	197592023	58874894	+	-	Y	-	0.227487244897959	N	SKBR3_13_2_1	660	1	631	602	2	1	N	N	1	1	2	0.827783467410055	0.745005120669049	0.827783467410055	0.745005120669049	2	-	0.5	0.60524179975777
122717	GCCTTTTTTCCCACCAGAGGCTTCTTCTGCTTCTTAACACCAACAGCAGCCTTCTTTCCTTTCTTACCTACCACAGGCTTCTTGCCTGCAACCGCCGCCTTCTCATCTGATTTGGCTTGTAGTGCCGCTGCTGCAGCAGCTGCCTTATCCACCCGGAGCTTGTGCTGCAACAAATTAGGCAGAAAACAGTAAGAATCAAATCCCTGTAAGAACTTAATGTATCAGGAAGAGAAAAACAAAAACAAAACAAACCAGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGC|GGGTGTTGATGCGATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAAACGGCAGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGAGGCGCATGAATG	1	5.20825057880131e-07	0.254583648908217	0.223418152789081	N	N	3.63193049733206	3.30165909935164	3.30165909935164	splitr	80	0.0273972602739724	0	0	N	0.0273972602739724	N	N	21672	0	ENSG00000174444	ENSG00000226958	+	-	15	X	66797221	108297792	intron	intron	RPL4	RN28S1	66790801	108297361	-	-	0.0273972602739724	66792132	108297366	+	-	Y	0.273166102189589	1	N	SKBR3_13_2_1	30	1	21	12	2	2	N	N	0	1	2	0.538059253816536	0.662226773928044	0.662226773928044	0.538059253816536	2	1772	0	0.60524179975777
71339	GGTGAAAGAGCAAAACTCCATCTCAAAAAAAAAAAAAAAAAA|AAAAAAAACAACGGTGGAGCCTTCGCACTCAATGCCAACTTTTTGTTACAGATTAATTTTTCCATAAAACCATTTTTTGAACCAATCAGTAATTTTAAGGTTTTGTTTGTTCTAAATGTAAGAGTTCAGACTCACATTCTATTAAAAT	2	0.39458688162905	0.258666488296237	0.373143407944048	N	Y	2.42941895728268	3.46444154923874	2.42941895728268	splitr	56	0	0.380952380952381	0	N	0.5	Y	N	0	6412	ENSG00000229435	ENSG00000136238	+	-	7	7	159026067	6443608	upstream	utr3p	PIP5K1P2	RAC1	159024125	6414154	+	+	0	5842811	6442161	+	-	N	-	0.795320817117675	N	SKBR3_13_2_1	69	0.34	36.5	4	2	1	N	N	0.34	0	2	0.413891733705027	0.827783467410055	0.827783467410055	0.413891733705027	2	-	175.5	0.60524179975777
141390	CATCCCCGTATCTGTGATCAGACATTCCTGAAAAACAGTAATTGAGGTCTCTTCCAAATCTATCTGACCCAAATCCATAGCCATCATTATAGCCATTGTAATCATCATAGCCTCCATAG|CCTCCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACACTACTCCCTATATCTAACAACGTAAAAATAAAATGACAGTTTGAACACACAAAACCCACCCCATTCCTCCCCACAC	1	1	1	0.935920242646516	N	N	3.26926912955223	3.08159870855265	3.08159870855265	splitr	22	0.151260504201681	0.100840336134454	0	N	0.109243697478991	N	N	2692	0	ENSG00000169045	ENSG00000225630	-	-	5	1	179061785	566063	coding	intron	HNRNPH1	RP5-857K21.8	179041179	565020	-	+	0.151260504201681	179045060	565877	+	-	Y	-	1	N	SKBR3_13_2_1	6	0	4	2	3	1	N	N	0	0	3	0.844339136758256	0.653948939253943	0.844339136758256	0.653948939253943	3	-	0	0.60524179975777
130995	AATGCTAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAAC|AAAAAAAAAAAAAGACGCAATGCTTTATTATTTATC	4	1	0.0718430356692108	0.102116714308385	N	Y	3.23999710710482	2.8379823428224	2.8379823428224	splitr	35	0.305555555555556	0.333333333333333	0	N	0.527777777777778	N	N	14698	1070	ENSG00000187514	ENSG00000198824	+	-	2	13	232578251	115092796	utr3p	upstream	PTMA	ZNF828	232571605	115079988	+	+	0.305555555555556	232577585	105434998	+	-	Y	-	-	N	SKBR3_13_2_1	20	0.909090909090909	16	12	2	1	N	N	0.381679389312977	0.909090909090909	2	0.827783467410055	0.45528090707553	0.827783467410055	0.45528090707553	1	-	-	0.60524179975777
70812	ATTATTGCAGCCCTAGCAACACTCCACCTCCTATTCTTGCACGAAACGGGATCAAACAACCCCCTAGGAATCACCTCCCATTCCGATAAAATCACCTTCCACCCTTACTACACAATCAAAGACGCCCTCGGCTTACTTCTCTTCCTTCTCTCCTTAATGACATTAACACTATTCTCACCAGACCTCCTAGGCGACCCAGACAATTATACCCTAGCCAACCCCTTAAACACCCCTCCCCACATCAAGCCCGAATGATATTTCCTATTCGCCTACACAATTCTCCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTGCCCTATTACTATCCATCCTCATCCTAGCAATA|ATCCCCACCTCCAAATATCTCATCAACAACCGACTAATCACCACCCAACAATGACTAATCAAACTAACCTCAAAACAAATGATAACCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATC	2	1.20326453726768e-09	0.983207120852572	0.516831421341569	N	N	3.43697934467738	3.04015804200544	3.04015804200544	splitr	30	0.116504854368932	0.116504854368932	0	N	0.145631067961165	Y	N	37049	38194	ENSG00000198727	ENSG00000198899	+	-	MT	MT	15887	9207	coding	coding	MT-CYB	MT-ATP6	14747	8527	+	+	0.116504854368932	15655	8617	+	-	N	-	-	N	SKBR3_13_2_1	2	0	2	2	2	3	Y	N	0	0	2	0.827783467410055	0.496670080446033	0.827783467410055	0.496670080446033	2	-	-	0.60524179975777
125730	GTGCAATCAAAGTCCTCGGCCACATTGTGAACTTTGGGGGATGCTCGCTCCAACCGACTGCTGTCACCTTCACCGTTCCAG|TTTTTAAATCCTGAGGACTAGCATTAATTGACAGCTGACCCAGGTGCTACACAGAAGTGGATTCAGTGAATCTAGGAAGACAGCAGCAGACAGGATTCCAGGAACCAGT	1	0.511573023291264	0.12875022366714	0.0640797573534845	N	N	3.51377186168787	3.5319270478477	3.51377186168787	splitr	15	0	0	0	N	0	N	N	30285	0	ENSG00000075624	ENSG00000251562	-	-	7	11	5603415	65273940	utr3p	intron	ACTB	MALAT1	5566782	65265233	-	+	0	5567232	65267827	+	-	Y	-	1	N	SKBR3_13_2_1	7	0	4.5	2	2	1	N	N	0	0	2	0.562892757838837	0.438725237727329	0.562892757838837	0.438725237727329	3	-	0	0.60524179975777
100880	AAGGGGCTGGCTCCGATGTATTTGATGGTGACCTGGGAATGGGGGCAGCCAAGGGGCTGCAAAGCCTCCCCACACATGACCCCAGCCCTCTACAGCGGTACAGTGAGGACCCCACAGTACCCCTGCCCTCTGAGACTGATGGCTACGTTGCCCCCCTGACCTGCAGCCCCCAGCCTGAATATGTGAACCAGCCAGATGTTCGGCCCCAGCCCCCTTCGCCCC|CCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGGTTGAAGC	1	0.00014150148718684	0.390564714822603	0.421349522516249	N	N	3.37126417066287	3.14421922265586	3.14421922265586	splitr	0	0	0	0	N	0	N	N	74211	3	ENSG00000141736	ENSG00000230021	+	-	17	1	37884915	659930	coding	intron	ERBB2	RP5-857K21.4	37844393	536816	+	-	0	37883986	568358	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.587726261861139	0.827783467410055	0.827783467410055	0.587726261861139	2	-	0	0.60524179975777
109815	CGTTCGTCGCCCAGGCTGGAGTGCAGTGGTACGATCTCAGCTCACTGCAGCCTCCACCTCCCAGGTTCAAGTGATTCTTCTCCCTCAGCCTCCCAGGTAGCTGGGACTACA|GATGGAGTCTCGCTCTGTCACCCAGGCTGAAGTGCAGTGGCACGATCTCAGCAGACTGCAACCTCCGCCTCCCGGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCAAG	1	0.977457932051343	1	0.935920242646516	N	Y	3.45872825368684	3.54400240599166	3.45872825368684	splitr	219	1	0.73148148148148	1	Y	0.73148148148148	N	N	217	33	ENSG00000170476	ENSG00000170464	-	-	5	5	138725770	138780180	intron	intron	RP11-1280I22.1	DNAJC18	138723169	138744279	-	-	0.824074074074074	138724701	138753283	+	-	N	-	0.91634006132313	N	SKBR3_13_2_1	1840	1	1022	204	2	1	N	N	1	1	2	0.587726261861139	0.695338112624446	0.695338112624446	0.587726261861139	1	-	1	0.60524179975777
140894	ACTGGCTGCCAGAAACTCATTGAAGTGGACGATGAACGCAAACTTCGTACTTTCTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACGCTCTGGGTGAAGAATGGAAGG|GTACAGCCAATGCCCGAATGCCAGAGAAGGTCACATGGATGAGGAGAATGACGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAG	1	0.660087552081805	1	0.935920242646516	N	N	3.49272035470961	3.59528445727371	3.49272035470961	splitr	8	1.11022302462516e-16	0.0217391304347826	0	N	0.108695652173913	N	N	15005	0	ENSG00000137154	ENSG00000218227	-	-	9	5	19380252	177483195	coding	intron	RPS6	RP11-889L3.1	19375713	177482605	-	+	1.11022302462516e-16	19379484	177482852	-	-	Y	1.80929577432274	1	N	SKBR3_13_2_1	20	0	13	6	2	1	N	N	0	0	2	0.571170592512938	0.827783467410055	0.827783467410055	0.571170592512938	1	2367.5	0	0.60524179975777
134836	GCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCCCTTGAGTTCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTGAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAACGGAGCAGGTCAAAACTCCCGTGCTGATCAGTAGTGGGATTGCGCCTGTGAATAGC|CACTGCACTCCAGCCTGGGCAACATATGAGATCCCATCT	1	0.509088739011333	0.899266171301115	0.897571427984624	N	Y	3.58424216889964	3.41160994654802	3.41160994654802	splitr	32	0.564102564102564	0	0.333333333333333	N	0.564102564102564	N	N	0	0	ENSG00000253128	ENSG00000242158	-	-	14	2	107281252	60868137	downstream	intron	IGHV4-80	AC012498.1	107281000	60867849	-	+	0.794871794871795	50320376	60868097	-	-	Y	-	1	N	SKBR3_13_2_1	114	1	70	18	3	1	N	N	1	1	3	0.836061302084155	0.413891733705027	0.836061302084155	0.413891733705027	2	-	0	0.60524179975777
124566	GAATGATGGTTGTCTTTGGATATACTACAGCGATGGCTATTGAGGAGTATCCTGAGGCATGGGGGTCAGGGGTTGAGGTCTTGGTGAGTGTTTTAGTGGGGTTAGCGATGGAGGTAGGATTGGTGC|AGTGCTTGAATTATTTGGTTTCGGTTGTTTTCTATTAGACTATGGTGAGCTCAGGTGATTGATACTCCTGATGCGAGTAATACGGATGTGTTTAGGAGTGGGACTTCTAGGGGATTTAGCGGGGTGATGCCTGTTG	1	1	0.526775457519482	0.600084425908804	N	Y	3.07208400348843	3.35294115063369	3.07208400348843	splitr	262	1	0.0158730158730159	0	Y	0.0634920634920635	N	N	19641	33743	ENSG00000198695	ENSG00000198938	+	+	MT	MT	14673	9990	coding	coding	MT-ND6	MT-CO3	14149	9207	-	+	0.00793650793650802	14364	9694	-	+	N	-	-	N	SKBR3_13_2_1	6	0	4.5	3	2	1	N	N	0	0	2	0.827783467410055	0.504947915120133	0.827783467410055	0.504947915120133	1	-	-	0.60524179975777
140664	GCTAACGGGAATGCTAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACT|AAAAAAAAAAAAGGCCAGGCGCGGTGGCTCACGCCTGTAAT	6	0.384714564868171	0.0447477721654546	0.0687374685936848	N	Y	3.23999710710482	3.17147853872597	3.17147853872597	splitr	297	0.73170731707317	0.365853658536585	0	N	0.512195121951219	N	N	14698	2146	ENSG00000187514	ENSG00000101150	+	+	2	20	232578251	62522898	utr3p	intron	PTMA	TPD52L2	232571605	62496596	+	+	0.707317073170731	232577586	62498123	+	+	Y	-	0.419910797863554	N	SKBR3_13_2_1	15	0.92	10.5	6	2	1	N	N	0.458333333333333	0.92	2	0.596004096535239	0.413891733705027	0.596004096535239	0.413891733705027	2	-	55.5	0.60524179975777
133046	TGCGGCTGTAGACGCCATGATGGATGTGTCTGGTGTGGGTTTCCCAAGCAAGGTTCCTTGGAAGAAGATGTCTGCAGAGGAGCTGGAGAATCAGTACTGTCCCAGCCGATGGGTTGTCCGACTGGGAGCAGAGGAAGCCTTGAGGACCTACTCACAGATAGGAATTGAAGCC|TTGGAGTGCAATGGCGCAATCTCAGCTCACCGCAATCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAACTGGGATTACAGGCATGTGCCACCA	1	0.816249229079358	0.800133926999915	0.844771979185218	N	Y	3.6727393216935	3.69954397701701	3.6727393216935	splitr	282	0.954545454545455	0.590909090909091	0	N	0	N	N	611	398	ENSG00000183077	ENSG00000003402	+	-	17	2	76203782	202029033	coding	coding	AFMID	CFLAR	76183398	201980827	+	+	0	76198581	202018861	+	-	Y	-	-	N	SKBR3_13_2_1	72	1	52	32	2	1	N	N	0	1	2	0.422169568379128	0.827783467410055	0.827783467410055	0.422169568379128	1	-	-	0.60524179975777
132779	CGACGACGAGCGCGGCGATATCATCATCCATGGTGAGCTGGCGGCGGGTGTGGACGGGCGGCGGATCGGCAAAGGCGAGGCTCTGTGCTCGCGGGGCGGACGCGGTCT|CGGCGGCGGCTACGGCGGCGTCCTGACCGCGTCCGACGGGCTGCTGGCGGGCAACGAGAAGCTAACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGCGGCCAACGGCGAGCTAGAGGTGAAGATCCGCGACTGGTACCAGAAGCAGGGGCCTGGGCCC	1	0.414403001072419	0.447538936456759	0.5	N	N	3.18292205468417	3.05376098345926	3.05376098345926	splitr	8	0	0	0	N	0.101851851851852	N	N	30285	58670	ENSG00000075624	ENSG00000171345	-	+	7	17	5603415	39684560	utr5p	coding	ACTB	KRT19	5566782	39679869	-	-	0	5570225	39684317	+	+	Y	-	0.922719870663684	N	SKBR3_13_2_1	4	0	2.5	1	1	1	N	N	0	0	2	0.653948939253943	0.645671104579843	0.653948939253943	0.645671104579843	1	-	2549	0.60524179975777
138150	TGTAAATGAGTGAGGCAGGAGTCCGAGGAGGTTAGTTGTGGCAATAAAAATGATTAAGGATACTAGTATAAGAGATCAGGTTCGTCCCTTAGTGTTGTGTATGGCTATCATTTGTTTTGAGGTTAGTTGGATTAGTCATTGTTGGGTGGTAATTAGTCGGTTGTTGATGAGATATTTGGAG|GTGAAGCTCACTCCGAGTTCCTAAAAGCAGCCAGCAACTTGAGGGATAACTACCGATTTGCACATACGAATGTTGAGTCTCTGGTGAACGAGTATGATGATAACGGAGATGGTATCATCTTATTTCGTC	1	0.183780521665093	0.612610548302747	0.693969709788871	N	N	3.16207823436861	3.58271458558979	3.16207823436861	splitr	3	0.0232558139534883	0	0	N	0.00775193798449592	N	N	3	0	ENSG00000230021	ENSG00000180867	-	-	1	1	659930	146651206	intron	intron	RP5-857K21.4	RP11-337C18.5	536816	146649692	-	+	0.0232558139534883	569174	146650186	-	-	N	0.828962371721779	1	Y	SKBR3_13_2_1	6	0	5	4	2	1	N	N	0	0	2	0.745005120669049	0.413891733705027	0.745005120669049	0.413891733705027	2	0	0	0.60524179975777
138868	TTTTTTTTTTTTTCATGACAAGGTGCGGCTCCCTAGGCCCCTCCCCTCTTCAAGGGGTCTACATGGCAACTGTGAGGAGGGGAGATTCAGTGTGGTGGGGGACTGAGTGTGGCAGGGACTCCCCAGCAGTGAGGGTCTCTCTCTTCCTCTTGTGCTCTTGCTGGGGCTGGTGGTCCAGGGGTCTTACTCCTTGGAGGCCATGTGGGCCATGAGGTCCACCACCCTGTTGCTGTAGCC|AAATGCCTCGTCATCTAATTAGTGAGGCGCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGACTTGGCGGAATCAGCGGGGA	1	0.00340813431777197	0.899266171301115	0.897571427984624	N	N	3.43039601505348	3.70040921291755	3.43039601505348	splitr	10	0	0.0336134453781514	0	N	0.0924369747899161	N	N	62936	0	ENSG00000111640	ENSG00000226958	-	-	12	X	6647537	108297792	coding	intron	GAPDH	RN28S1	6643093	108297361	+	-	0	6647283	108297475	-	-	Y	-	1	N	SKBR3_13_2_1	5	1	5	5	2	1	N	N	0	1	2	0.645671104579843	0.778116459365451	0.778116459365451	0.645671104579843	2	-	0	0.60524179975777
42115	GGTTCATAGTAGAAGAGCGATGGTGAGAGCTAAGGTCGGGGCGGTGA|GGTCTTGGTGAGTGTTTTAGTGGGGTTAGCGATGGAGGTAGGATTGGTGCTGTGGGTGAAAGAGTATGATGGGGTGGTGGTTGTGGTAAACTTTAATAGTGTAGGAAGCTGAATAATTTATGAAGGAGAGGGGTCAGGGTTGATTCGGGAGGATCCTATTGGTGCGGGGGCTTTGTATGATTATGGGCGTTGATTAGTAGTAGTTACTGGTTGAACATTGTTTGTTGGTGTATATATTGTAATTGAGATTGCTCG	1	1	0.800133926999915	0.844771979185218	N	N	3.27717235582328	3.16100531180537	3.16100531180537	splitr	3	0.0638297872340428	0.0638297872340428	0	N	0.234042553191489	Y	N	17065	19641	ENSG00000198888	ENSG00000198695	-	-	MT	MT	4262	14673	coding	coding	MT-ND1	MT-ND6	3307	14149	+	-	0.0638297872340428	3521	14413	-	+	N	-	-	N	SKBR3_13_2_1	2	0	2	2	2	2	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	0	-	-	0.60524179975777
108849	CCCCACTATGCACATTTTATTTCTCCAACATACTCGGATTCTACCCTAGCATCACACACCGCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACCTCCATCATCACCTCAACCCAAA|TACTCCACCTCAATCACACTACTCCCCATATCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAACCCACCCCATTCCTCCCCACACTCATCGCCCTTACCACGCTAC	4	0.345663129627714	0.170466845794889	0.341773455113556	N	N	2.78104980386964	2.99884535653422	2.78104980386964	splitr	0	0	0	0	N	0.0956521739130435	Y	N	54817	24767	ENSG00000198786	ENSG00000198763	+	-	MT	MT	14148	5511	coding	coding	MT-ND5	MT-ND2	12337	4470	+	+	0	14077	5361	+	-	N	-	-	N	SKBR3_13_2_1	2	0	2	2	3	3	N	N	0	0	3	0.91056181415106	0.720171616646748	0.91056181415106	0.720171616646748	2	-	-	0.60524179975777
125409	CAGAAAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAATTGGGGAGGGAAGGGCG|CGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGTGGAGGCGGGTGGATCACAAGGTCAAGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCTGTCTCTATTAAAAATACAAAAATTAGCTGGGCGTGGTGGCGCATGCCTGTAGTCCCAACTACTAGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGCGACAGAGCGAGACTCCCTCTCAAAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCATTGTGGTGCATGCCTGTAATCTCAGCTATTTGGGAGGCCGAGGC	1	3.14209479711661e-05	0.612610548302747	0.693969709788871	N	Y	1.97732065289493	3.60000453584907	1.97732065289493	splitr	413	0.387096774193549	0.387096774193549	0	N	0	N	N	2596	430	ENSG00000085117	ENSG00000164902	+	-	11	5	44641913	125962944	utr3p	utr3p	CD82	PHAX	44585977	125935960	+	+	0	44641356	125962158	+	-	Y	-	-	N	SKBR3_13_2_1	108	0.55	68.5	29	2	1	N	N	0.407407407407407	0.55	2	0.44700307240143	0.827783467410055	0.827783467410055	0.44700307240143	2	-	-	0.60524179975777
64491	GAAATAGAATGATCAGTACTGCGGCGGGTAGGCCTAGGATTGTGGGGGCAATGAATGAAGTGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTTTGTTATAGTTTTTTATTTTTATGGGCTTTGGTGAGGGAGGTAGGTGGTAATTTGTATTTAATATTTTTAGTTGGGTGATGAGGAATAGTGTAAGGAGTATGGGGGTAATTATGGTGGG|AGGAGGAGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGATAGTTATGGAGGAGGTGATGGTGGATATAATGGATTTGGAGGTGATGGTGGCAACTATGGCGGCGGTCCTGGTTATAGTAGTAGAGGGGGCTATGGTCGTGGTGGACCAG	1	0.00633293372197298	0.704121951840997	0.776581847210919	N	N	2.93400021659171	3.02501816967196	2.93400021659171	splitr	7	0	0	0	N	0	Y	N	3	0	ENSG00000230021	ENSG00000219102	-	+	1	1	659930	54441772	intron	intron	RP5-857K21.4	RP1-167A19.5	536816	54440648	-	-	0	568942	54441046	-	+	N	0.828962371721779	1	N	SKBR3_13_2_1	15	1	12.5	10	6	1	N	N	0	1	6	0.927117483499261	0.670504608602144	0.927117483499261	0.670504608602144	1	0	0	0.60524179975777
141673	GGTGGGATGCCGTCAAACACCTTGAGACGGTCCAGAGCGGCCTGGCCTCGCTTGGTCTTGTGGGGCAGCATACC|TCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAGGAAAAGACTCATATCAACATTGTCGTCATTGGACACGTAGATTCGGGCAAGTCCACCACTACTGGCCATCTGATCTATAAATGCGGTGGCATCGACAAAAGAACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCTTCAAGTATGCCTGGGTCTTGGATA	1	0.295491376044874	0.800133926999915	0.844771979185218	N	N	3.61464054707278	3.43614916339873	3.43614916339873	splitr	23	0	0	0	N	0.108108108108108	N	N	0	0	ENSG00000236552	ENSG00000196205	-	-	10	9	98510675	135896553	intron	upstream	RPL13AP5	EEF1A1P5	98510045	135894816	+	+	0	98510300	135894815	-	-	Y	1	-	N	SKBR3_13_2_1	90	0	57	24	2	1	N	N	0	0	2	0.645671104579843	0.827783467410055	0.827783467410055	0.645671104579843	1	0	-	0.60524179975777
81182	CCTCCTCTTCCTCCCCACCTTCTTCCTCTTCTTCGTCTACCTCATTGTCAGCCTCCTGCTCCCCATTTTCCTC|ACCATACCTCTTACTTCAACCTCCCTCACCATTGGCAACCTAGCATTGGCAGGAATACCCTTCCTCACAGGTTTCTACTCCAAAGACCACATCATCGAAACCGCAAACATATCATACACAAACGCCTGAGCCCTGTCTATTACTCTCATCGCCACCTCCCTGACAAGCGCCTATAGCACTCGAATAATTC	1	1	0.269262891586344	0.244611167082359	N	N	3.26613006744921	3.27824527838653	3.26613006744921	splitr	1	0	0	0	N	0	N	N	14698	31	ENSG00000187514	ENSG00000132570	-	+	2	5	232578251	134343649	coding	intron	PTMA	PCBD2	232571605	134240596	+	+	0	232576603	134261057	-	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	12	0.354430379746835	8	4	2	1	N	N	0.354430379746835	0	2	0.653948939253943	0.827783467410055	0.827783467410055	0.653948939253943	3	-	1	0.60524179975777
125743	CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGCTACTGGCAGGATCAACCAGGTAGGTAGGTAGAGCGCGGCGAGGCCCCGACGCGGCCGGACGGCCGGCCGGGGGGCCTCGCGAGGACGGGCCCGGCGCCCCGCAAGCGAGGAGGACGACGGACGGACGGACGGACGGGCCGCGGACGGGCGGACGGGAGGGAGCGAGCGGGCGCGGGGGCGGCGGCCGGG|GGGGCGCCGGGGGCCTCCCACTTATTCTACACCTCTCACGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCCTCACTAATTAGATGACGAG	8	1.36013396905737e-11	0.0288085701595652	0.0423690302380985	N	N	2.29442503212581	3.15678909433978	2.29442503212581	splitr	19	0	0	0	N	0	N	N	0	0	ENSG00000212932	ENSG00000226958	-	+	21	X	48111157	108297792	upstream	intron	RPL23AP4	RN28S1	48110676	108297361	+	-	0	9826838	108297679	-	+	Y	-	1	N	SKBR3_13_2_1	5	1	4.5	4	2	1	N	N	1	1	2	0.827783467410055	0.504947915120133	0.827783467410055	0.504947915120133	1	-	0	0.60524179975777
141725	GAAAACCTGAACTTGCATCACCAGCTCCACCATAGCCATGTCCTCCCATACCTCTTCCATCTCTCATTCTGTCATCAAAGCCATCATTCCCATAGCCGTAATTATTATAGCCACCATAGTCATCAAAACCTCCATAACCACCATCATATCCATCACCTCC|AAAATTGCTGGCATCATTACCAAATCCATTATAGCCATCCCCACTGCCACCATATCCACCACCACAACAGCTGCCACCAAAGCCACCATGACCACTGAAGTTTCCTCCACGACCAAAGTTGTCATTCCCACCAAAACCACCACC	1	0.256540803678956	0.254583648908217	0.223418152789081	N	N	2.80562467568064	3.34677742713451	2.80562467568064	splitr	19	0	0	0	N	0	N	N	2062	0	ENSG00000096746	ENSG00000233615	-	+	10	1	70102948	241083909	coding	intron	HNRNPH3	RP11-435F13.1	70090931	241082953	+	+	0	70098423	241083711	-	+	Y	-	1	N	SKBR3_13_2_1	23	1	17.5	12	2	1	N	N	0	1	2	0.75328295534315	0.529781419142435	0.75328295534315	0.529781419142435	1	-	0	0.60524179975777
131598	GTTCTTGGCCCGTGCAAATGTATCTGTGTTGGTGATGTCATAGACCACGATGGCAGCCTGGGCCCCCCGATAGTACATGGGGGCCAGGCTGTGATACCGCTCCTGTCCAGCTGTGTCCCAGATCTCAAACTTGACTGTTGTGTCATCCAGGCAGACAGTCTGTGTGAGGAAGGCCGCTCCAATTGTGCTCTCCTGGTACTCGTGAAACTGTCCCTTGACAAAGCGGAGGACGAGGCTGGATT|AACTATGACTCTCTTAAGGTAGCCAAATGCCTTGTCATCTAATTAGTGACGCACATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAATGGGCTTGGCGGAATCAGCAGGGAAAGA	2	0.020346719728173	0.258666488296237	0.373143407944048	N	N	3.50000108636471	3.70040921291755	3.50000108636471	splitr	1	2.22044604925031e-16	2.22044604925031e-16	0	N	2.22044604925031e-16	N	N	7812	356	ENSG00000108774	ENSG00000149262	-	-	17	11	40307022	77705724	coding	intron	RAB5C	INTS4	40276998	77589766	-	-	2.22044604925031e-16	40282420	77597577	+	-	Y	-	1.69881089015784	N	SKBR3_13_2_1	4	1	4	4	2	1	N	N	0	1	2	0.827783467410055	0.653948939253943	0.827783467410055	0.653948939253943	1	-	7.5	0.60524179975777
22284	TTGCTGCGCAATGTCCCGGGGCCCCCCTCCCGTGGCCGCTTCGCCCTCCTGGTGACGTCCTGCTGCAACTCCCCGAGCACTGCCTGTCTTCCCGCTCTCCAGCCCTC|CTAATGACCTCCGGCCTAGCCATGTGATTTCACTTCCACTCCACAACCCTCCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAAGCAC	2	0.867859630944085	0.174603456520587	0.217484245625152	N	N	3.1180370619483	3.73978373992499	3.1180370619483	splitr	28	0.11214953271028	0.0560747663551402	0	N	0.121495327102804	N	N	83603	3	ENSG00000130600	ENSG00000230021	-	-	11	1	2022700	659930	intron	intron	H19	RP5-857K21.4	2016406	536816	-	-	0.11214953271028	2018219	569831	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	5	7	N	N	0	0	5	0.877450475454658	1.24995303578918	1.24995303578918	0.877450475454658	1	-	0	0.60524179975777
99063	TGACCCAGATGGGACTATTACCTATCGCCAAGCGGTGAGACCACTGCCTATCGCTGAGCGGTGAGACTATCACCTATCGCCAAGCAGT|CAACGGCAGGGGTCTAAGGAGTGACTGCCCAACGTGAGGCTTCAAGATGAGCCAATTACCAATTATGCACGGCGTTTCTCCTTCTCTTCCTTCATTCCCATAGAGAATCCCATTCCTATCTCCTTCGCCAGCCCAAGGCAATGGGCCTCTCCCAGCAACTGGGTGGGCAAGTTTTACCTGCTGGATAGTGTTGCCTCTTTCCTAGGTAACAGAGTGGCTTTCCTACCTAAGCCAGTCTCTGATGCAAAGAAGAGAATGCCACCTCCC	13	0.00308277702478357	0.828217323007277	0.47101461382519	Y	Y	3.81657625693547	3.55553920790569	3.55553920790569	splitr	355	1	0	0	Y	0	N	N	719	3501	ENSG00000104823	ENSG00000104824	+	-	19	19	39322497	39342987	intron	intron	ECH1	HNRNPL	39306068	39327029	-	-	0	39314039	39327518	+	-	N	0.914237290809833	0.799731838659575	N	SKBR3_13_2_1	1	0.733333333333333	1	1	0	2	N	Y	0.733333333333333	0	3	0.496670080446033	0.935395318173362	0.935395318173362	0.496670080446033	2	31	142.666666666667	0.60524179975777
77010	TATTTGGAGGTGGGGATCAATAGAGGGGGAAATAGAATGATCAGTACTGCGGCGGGTAGGCCTAGGATTGTGGGGGCAATGAATGAAGTGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTTTGTTATAGTTTTTTATTTTTATGGGC|CACCTGGAACTGGAAAGACTCTGGTTGCCAGAGCACTTGCCAATGAGTGCAGTCAAGGGGATAAAAGAGT	1	0.977457932051343	0.12875022366714	0.0640797573534845	N	N	2.84277457684876	3.50272957331379	2.84277457684876	splitr	10	0	0	0	N	0.0428571428571427	N	N	3	12701	ENSG00000230021	ENSG00000156802	-	+	1	8	659930	124428590	intron	coding	RP5-857K21.4	ATAD2	536816	124332090	-	-	0	569034	124369956	-	+	Y	0.828962371721779	1.10338330237801	N	SKBR3_13_2_1	3	0	3	3	2	1	N	N	0	0	2	0.471836576423731	0.546337088490636	0.546337088490636	0.471836576423731	2	0	258.5	0.60524179975777
141244	TCCTCCTCCTCTGCCTCCTCGGAAGCCTCCTCGCCCTCCAAAGCCTCCCCGGCCTCTGCCACCAAATCCTCCTCGGCCTCCTC|TACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTCATTCATTGCCCC	2	0.0659233958226336	0.628320794780147	0.626856592055952	N	N	2.87904473687332	2.80150174417089	2.80150174417089	splitr	27	0.0481927710843374	0.0481927710843374	0	N	0.0602409638554217	N	N	7868	3	ENSG00000115053	ENSG00000230021	-	-	2	1	232348352	659930	coding	intron	NCL	RP5-857K21.4	232318242	536816	-	-	0.0481927710843374	232320159	569011	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	3	0	2.5	2	4	2	N	N	0	0	4	1.08439634230717	0.90228397947696	1.08439634230717	0.90228397947696	2	-	0	0.60524179975777
82036	GGGTGGCTCTGCATCCCGGAGGCAGCTCATATAGCGGGGCGTGCAGAAGCCACCTGCCCGAGTGCCACGGCGCCGCGAACGCTTCTGCCCATTGCGTTCACCCCAGGCTGTTTTCCGTTCATCCACTTTAGGGACCAGGAGGCCACTAAACCATGACATGTTGCTG|CCGGCCCGGCTCCGCGCCTGCCCTGGGCCCCCGCCCCGCCGCCCCCGCGGGCTCCGGCCGGCCGGC	10	1	0.873090904936312	0.782235256892846	N	Y	3.51935717616377	2.31229339140838	2.31229339140838	splitr	232	1	2.22044604925031e-16	0	Y	0.590909090909091	N	N	2809	0	ENSG00000174233	ENSG00000227059	-	-	12	12	49177877	133812681	utr5p	downstream	ADCY6	AC226150.2	49159975	133794898	-	-	0	49177224	49182692	+	-	N	-	-	N	SKBR3_13_2_1	1	0.891891891891892	1	1	0	2	N	N	0	0.891891891891892	6	0.918839648825161	0.612559765883441	0.918839648825161	0.612559765883441	3	-	-	0.60524179975777
130485	AGGGGCGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAG|GTGGCCAGGCGCAGTGGCTCACGCTTGTAATCCCAGCACTTTGGAAGATGGAGACGGGCAGATTACCTGAGGTCAGGAGTTCAAGACCAGCCTGGTCAACATGGCAAAACCCCGTCTCTACTAAAAATGCAAAAATTAGCCAGATGTGGTGGTGCTCACCTGTAGTCCAAGCTACTCA	1	1	0.205558172728075	0.155228020814782	N	Y	3.57386222793487	3.63978029044062	3.57386222793487	splitr	279	0.930693069306931	0.0099009900990098	0	N	0.0099009900990098	N	Y	1	9	ENSG00000249383	ENSG00000235277	+	-	17	21	49412526	16319417	intron	intron	RP11-1018N14.1	AF127577.8	49389970	16290855	-	+	0	49410361	16318876	-	-	Y	-	-	N	SKBR3_13_2_1	451	1	243.5	36	2	1	N	N	1	1	2	0.554614923164737	0.827783467410055	0.827783467410055	0.554614923164737	4	-	-	0.60524179975777
115312	CCCTAGACCTCAACTACCTAACCAACAAACTTAAAATAAAATCCCCACTATGCACATTTTATTTCTCCAACATACTCGGATTCTACCCTAGCATCACACACCGCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACCTCCATCATCACCTCAACCCAAAAAGGCATAATTAAACTTTACTTCCTCTCTTTCTTCTTCCCAC|AACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTC	2	0.00892510872469696	0.258666488296237	0.373143407944048	N	N	2.99508379981525	3.6297405666129	2.99508379981525	splitr	11	0	0	0	N	0	Y	N	54817	121749	ENSG00000198786	ENSG00000198804	+	-	MT	MT	14148	7445	coding	coding	MT-ND5	MT-CO1	12337	5904	+	+	0	14119	7186	+	-	N	6.93198913220898	-	N	SKBR3_13_2_1	4	0	2.75	2	8	3	Y	N	0	0	8	1.27478653981148	1.12578551567767	1.27478653981148	1.12578551567767	2	111.25	-	0.60524179975777
127381	CCTTTCTGGAGGTTCTGTGGTAGCAGCCTTTTTTTTTTTT|AGTTTAACTTTTCCTTTTTTGCTGTCTAGTCATCCTTGTCGGTCTTCTGCTTCTTGGTATCGACATCATCATCCTCATCATCTTCAGCTGCCCGCTTGCCTGTAGCAGACTCAGCTTCCTCTTCATCTCCATCCTCTTCCTCACCATCACCTTCTTTTTCCTCCTCCTCTTCCTCCCCACTTTCTTCCCCTTCTTCATCTACCTCCTTGTCAGCCTCCTGCTCCCCATTTTCCTCATTAGCATTCCCGTTAGCAGGGGCGTCTCTTCCATT	7	0.631196310349899	0.107174072302441	0.266821530562909	N	Y	3.01022367214873	3.16316473730098	3.01022367214873	splitr	29	0.25	0.05	1	N	0.25	N	N	15	7	ENSG00000254560	ENSG00000249044	-	+	11	9	27241660	99711867	intron	intron	RP11-1L12.3	RP11-330M2.7	27068733	99660348	-	-	0.25	27228067	99672712	-	+	Y	0.3573264781491	0.666045008081562	N	SKBR3_13_2_1	8	1	6.5	5	2	1	N	N	1	0.526666666666667	2	0.413891733705027	0.827783467410055	0.827783467410055	0.413891733705027	2	0	1	0.60524179975777
141270	TACATTCCAGGGCAACAATGGAGGAAGGGCAGGCAACGCATGAGGAATTAACAGTCTTTATTGGGCTCAGACCAGGAGTCCGTGGGTCTTGAGGACCTCTGTGTATTTGTCAATTTTCTTCTCCACGTTCTTCTCGGCCTGTTTCCGTAGCCTCA|TGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACT	1	0.621905761188442	1	0.935920242646516	N	N	3.2875921495814	3.6344911504118	3.2875921495814	splitr	12	0	0.115942028985507	0	N	0.130434782608695	N	N	29339	3	ENSG00000142541	ENSG00000230021	-	-	19	1	49995565	659930	coding	intron	RPL13A	RP5-857K21.4	49990811	536816	+	-	0.0434782608695654	49994803	568623	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	33	0	22	3	6	1	N	N	0	0	6	1.23339736644098	0.91056181415106	1.23339736644098	0.91056181415106	0	-	0	0.60524179975777
124065	TTGATTAGTAGTAGTTACTGGTTGAACATTGTTTGTTGGTGTGTATATTGTACTAGAGATTGCTCGGGGGAATAGATTATGTGATTAGGAGTAGGGTTAGGATGAGTGGGAAGAAGAAAGAGAGG|CAGAGGTCCAAGTAAACCGCTAGCTTGTTGCACCGTGGAGGCCACAGGAGCAGAAACATGGAATGCCAGACGCTGGGGATGCTGGTACAAGTTGTGGGACTGCATGCTACTGTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCCGATCACCTCTGAG	2	1	0.300746845443027	0.44684551411472	N	N	2.69694604998052	3.74913061111987	2.69694604998052	splitr	31	0.12	0.12	0	N	0.136	N	N	31	6323	ENSG00000132570	ENSG00000198637	+	-	5	7	134343649	137198984	intron	coding	PCBD2	AC090498.1	134240596	137198564	+	+	0.12	134260386	137198668	+	-	Y	1.2575464834446	1.45460363321514	N	SKBR3_13_2_1	28	0	28	28	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	1	1918.5	0.60524179975777
133526	GCACACCCTGTCTGAGCAACACGTGGCGCACAGCAGTGTCAACGTAGTAGTTAACAGGGTCTCCGCTGTGGATCATCAGGCCATCCACAAACTTCATGGATTTAGCCCTCTGTCCTCGGAGTTTCCCAGACACCACAACCTCGCAGCCTTTGGCCCCACTCTCCATGATGAACCGCAGCACACCATAG|CAGCCACCACACCCACAGCTACCAGCTTTACAGCCATCCCCTCCTCCTCCCTGGGCACCACCTGGACCCGCCTATCACAGACCACCACACCCACGGCCACCATGTCCACAGCCACACCCTCCTCCACTCCAGAGACTGTCCACACCTCCACAGTGCTTACCACCACGGCCACCACAACCGGGGCCACCGGCTCTGTGGCCACCCCCTCCTCCACCCCAGGA	1	0.0051492603687965	0.526775457519482	0.600084425908804	N	N	3.54296933622177	2.83911807326683	2.83911807326683	splitr	3	0	0	0	N	0	N	N	19201	2000	ENSG00000149273	ENSG00000117983	-	-	11	11	75133324	1284402	coding	coding	RPS3	MUC5B	75110530	1244296	+	+	0	75115070	1265693	-	-	N	-	0.985691197634306	Y	SKBR3_13_2_1	15	0	9.5	4	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	4.5	0.60524179975777
58532	ACTTATGCTTTCTTGCCAGATGCCTTTGGAGCAGGTGCTTTCTGGGCTGGAGCTTTTTGACCCTTCTGAGCTTTTGGAGCAGGCGCTGCTTTCTGGCCTGTGGCTTTCTGGGCAGGAACCTTCTGGGCTGGAGCCTTTTTACTCGCGGCGGTGATCTTTTTTGCTGGAACTTTAGCAGCAGCAGCAGCAGC|AGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGTGTGTGTGTGTGTGTG	18	1	0.843359563046576	0.908805029024951	N	N	3.17932833183454	2.27521384825715	2.27521384825715	splitr	32	0.297872340425532	0.297872340425532	0	N	0.638297872340426	N	N	7767	0	ENSG00000188846	ENSG00000213285	-	+	3	5	40506549	180899431	coding	upstream	RPL14	AC138031.1	40498783	180898964	+	+	0.297872340425532	40503535	137929950	-	+	Y	-	-	N	SKBR3_13_2_1	72	0.847457627118644	32.2	4	5	1	N	N	0	0.847457627118644	5	1.05956283828487	0.488392245771932	1.05956283828487	0.488392245771932	2	-	-	0.60524179975777
82486	CCCCTCCCACCTCCCCTCCCCTCCCCCTCCCCCGCCCCCCGCCCCCCGCCCCCCCCCACCATGAGGATGATGGCCGCCGGCGCGGTGCACGGCCTCTTCACGGCCTCCGCGGCCCCGCAGCCGCCGCCGCCCCCGCCGCCGCCGCCGC|AGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAG	3	1	0.116011632945107	0.165947979709814	N	N	1.94825387478213	3.42680229220385	1.94825387478213	splitr	8	0	0	0	N	0	N	N	0	0	ENSG00000104967	ENSG00000252318	-	+	19	2	46476657	133038738	upstream	intron	NOVA2	AC097532.1	46442771	133038647	-	-	0	46476714	133038722	-	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.75	1	3	1	N	N	0.647058823529412	1	4	0.422169568379128	0.802949963387753	0.802949963387753	0.422169568379128	3	-	0	0.60524179975777
127080	AATACAAAAAATTAGCCGGGCCTGGTGGCGGGCGCCTGTAATCTCAG|CTACTCCGGAGGCTGAGGTAAGAGAATCGCTTGAACCCAGGAGACAGAGGTTGCAGTGAGCGGAGATTATACCACTGTACTCCAGCCTGGCGACAGAGCAAGACTCCATCTCAGGAAAAAAAAAAAAAAAAAAAAAAGAAGAAAAGAAAAAGAAAAAGCCCTAGAAC	1	0.882828173661898	0.375556752806067	0.399915574091196	N	Y	3.51001030496889	3.74656995804013	3.51001030496889	splitr	214	0.574468085106383	0	1	N	0.0212765957446807	N	N	0	0	ENSG00000254287	ENSG00000227059	-	-	8	12	39778409	133812681	intron	downstream	RP11-44K6.4	AC226150.2	39775595	133794898	-	-	0.361702127659574	39778234	30643550	+	-	Y	-	-	N	SKBR3_13_2_1	280	1	146	12	2	1	N	N	1	0.82857142857143	2	0.579448427187038	0.579448427187038	0.579448427187038	0.579448427187038	4	-	-	0.60524179975777
104122	ATGTTTTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACA|ATCTCGACTCACTGCAACCTCTACCTCCTGGGTTCAAGTGATTCTCCTGCTTCAGCCTCCCCAGTAGCTGGGACTACAGGCACGCACCAGGATGCCAGGCCAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGGTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCCCTTCAGCCTCCCAAAGTG	1	0.899949484282616	0.254583648908217	0.223418152789081	N	Y	3.43887765034782	3.57485544491141	3.43887765034782	splitr	261	0.661016949152542	0.406779661016949	1	N	0.661016949152542	N	N	0	9119	ENSG00000254277	ENSG00000162909	+	-	8	1	72615021	223963720	intron	intron	RP11-1144P22.1	CAPN2	72587535	223889295	+	+	0.220338983050847	72614922	223945627	+	-	Y	-	-	N	SKBR3_13_2_1	1050	1	575	100	2	1	N	N	1	1	2	0.413891733705027	0.827783467410055	0.827783467410055	0.413891733705027	2	-	-	0.60524179975777
38427	GGCTCAGTGGAGGCAACTCATTTGTGCTCTACGTGGTGTCAGTGGGATCATTCATGCATTTGCAGTCAGTTGGCAGTTTGGCTGCCAGATGGCTGGTCTCAGATGGCTTCATTCATATCTTCCTATTGGTGCTGGCTGTTGGTAAAACCACGTATCTTCAGTAGGTTAGTCCAGGCATCTTCAACATAGAGT|CTGCCTTCGCAGTCCGCGTCCTCGTTCCACCGAATTGGCCGCAGGTACCCGCCGGCTGCAGGCACGTCCTCCAGCCGGCGGTCCGGGGTGGATGAAGTCGCTGCTGCCGAAAATCC	1	0.208232286338897	0.612610548302747	0.693969709788871	N	Y	3.53568860456667	3.61889661733171	3.53568860456667	splitr	308	1	0	0	Y	0.017241379310345	N	N	0	305	ENSG00000197646	ENSG00000107036	+	-	9	9	5571282	5776557	downstream	intron	PDCD1LG2	KIAA1432	5510545	5629025	+	+	0	5577511	5629567	+	-	N	-	0.465189722973253	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	0	2	0.745005120669049	0.794672128713653	0.794672128713653	0.745005120669049	4	-	3	0.60524179975777
104702	CTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCT|ACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAAACCCTCATTCACACGAGAAAACACCCTCATGTTCATACACCTATCCCCCATTCTCCTCCTAT	1	1	0.526775457519482	0.600084425908804	N	Y	3.56232542602083	3.03167640671111	3.03167640671111	splitr	243	1	0.0341880341880342	0	Y	0.837606837606838	N	N	121749	93473	ENSG00000198804	ENSG00000198886	+	-	MT	MT	7445	12137	coding	coding	MT-CO1	MT-ND4	5904	10760	+	+	0.0256410256410257	6105	11985	+	-	N	-	-	N	SKBR3_13_2_1	4	0	3	2	2	3	Y	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
129703	TCTGGAGCTCCACGACCGATCATCCCGTCTGTCATATCGGTCTTCATAGCGGTCCCCGCCTCCTCTGTAGTCATCA|CCCCTGCCATAACCCAATACCAAACGCCCCTTTTCGTCTGATCCGTCCTAATCACAGCAGTCTTACTTCTCCTATCTCTCCCAGTCCTAGCCGCTGGCATCACTATACTACTAACAGACCGTAACCTCAACACCACCTTCTTCGACCCAGCCGGAGGAGGAGACCCCATT	1	1	0.612610548302747	0.693969709788871	N	N	3.41885921313945	3.25724720457075	3.25724720457075	splitr	7	0	0	0	N	0	N	N	8396	0	ENSG00000063046	ENSG00000237973	-	-	12	1	53435992	567996	coding	intron	EIF4B	RP5-857K21.6	53400062	566454	+	+	0	53421857	566971	-	-	Y	-	1	N	SKBR3_13_2_1	4	0	4	4	2	1	N	N	0	0	2	0.44700307240143	0.811227798061854	0.811227798061854	0.44700307240143	2	-	0	0.60524179975777
70451	AGGCACCGATCCCGGCTCCGTCGCCGCCCGCGAGGCCCGCCTTGGCCACGGGCTCTGGAGGCCAGTGCCTCCCGCTCGCCGCCCGCTGCGCTCCTCACCCCTGCCTGCACCATCCTCCCTCCTGAGAGCTCATTCACTCCGCCCCGCCCGCCTCGCCTAGTCTGGTCTCGCCCCATGCCCTTGACTCCCCTGGATGCTGTACTGT|CTGACTCCTGCCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAATGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATGACATTCACAGCCATAGAA	1	0.0194088978113578	0.375556752806067	0.399915574091196	N	N	3.33680806132368	3.42208221362849	3.33680806132368	splitr	3	0.0225563909774437	0.0225563909774437	0	N	0.0225563909774437	N	N	83603	31	ENSG00000130600	ENSG00000132570	-	+	11	5	2022700	134343649	intron	intron	H19	PCBD2	2016406	134240596	-	+	0.0225563909774437	2017975	134263517	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	3	0	2.5	2	2	4	N	N	0	0	2	0.662226773928044	0.670504608602144	0.670504608602144	0.662226773928044	4	-	1	0.60524179975777
60297	GGTGAAGTTGGGGTTTTCATAGAGGATGATCTTGTGCTCTTGGCTGTCCACTTTGATGGGCCTCAGGGAGCTGAGGGAGTCCGTCCTTCGGCTGCTGGTCCATGAGTCCCAGCGGGGGTACTCACCCTTCTCAAACACAAACTGCTCGCCCTTGCAGTTGGCCTGTTCATAGCCCACCCAG|CGTGTAGAAAAAAATGCCCCGGAGAAGCTGAGCTGCACGCAGCTCCCGCCTAAGCAGTCAGGGCCATAGACGTGAGCTGTTTTCTCCCCAGGACGGGGCTCCAAGTGGTCCCCA	20	0.489711308915274	0.705353643515265	0.490212149174854	N	Y	3.41423242051993	3.34934742778406	3.34934742778406	splitr	295	0.807017543859649	0	0	N	0.807017543859649	Y	N	71	0	ENSG00000244752	ENSG00000100058	-	+	22	22	25627836	25916821	coding	intron	CRYBB2	CRYBB2P1	25615489	25844072	+	+	0.00877192982456154	25623820	25844251	-	+	N	-	1	N	SKBR3_13_2_1	2	0	1.75	1	3	2	N	N	0	0	4	0.645671104579843	0.943673152847462	0.943673152847462	0.645671104579843	4	-	0	0.60524179975777
84712	CACATTAACAACATAAAACCCTCATTCACACGAGAAAACACCCTCATGTTCATACACCTATCCCCCATTCTCCTCCTATCCCTCAACCCCGACATCATTACCGGGTTTTCCTCTTAAAAAAAAAAAAAAAAAA|TAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTAGAAAAAAA	3	0.934324217239705	0.0697481096246482	0.0727719375675796	N	N	2.66647312389387	2.94806716636195	2.66647312389387	splitr	12	0	0.0714285714285714	0	N	0.154761904761905	Y	N	93473	3466	ENSG00000198886	ENSG00000228253	+	-	MT	MT	12137	8572	downstream	coding	MT-ND4	J01415.25	10760	8366	+	+	0	12155	8496	+	-	N	-	-	N	SKBR3_13_2_1	2	0	1.5	1	1	2	Y	N	0	0	2	0.430447403053228	0.463558741749631	0.463558741749631	0.430447403053228	2	-	-	0.60524179975777
120850	GGGGAGCCAAAAGGGTCATCATCTCTGCCCCCTCTGCTGATGCCCCCATGTTCGTCATGGGTGTGAACCATGAGAAGTATGACAACAGCCTCAAGATCATCAGCAATGCCTCCTGCACCACCAACTGCTTAGCACCCCTGGCCAAGGTCATCCATGACAACTTTGGTATCGTGGAAGGACTCATGACCACAGTCCATGCCATCAC|TGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTAT	1	0.0172417557180787	0.12875022366714	0.0640797573534845	N	N	3.68208619288838	3.39397124202697	3.39397124202697	splitr	6	0.0338983050847459	0.0338983050847459	0	N	0.107344632768361	N	N	62936	3	ENSG00000111640	ENSG00000230021	+	-	12	1	6647537	659930	coding	intron	GAPDH	RP5-857K21.4	6643093	536816	+	-	0.0338983050847459	6646769	569312	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	20	0	12.3333333333333	8	3	1	N	N	0	0	3	1.09267417698127	1.20028602774458	1.20028602774458	1.09267417698127	2	-	0	0.60524179975777
137758	CTGCAACTCCCCGAGCACTGCCTGTCTTCCCGCTCTCCAGCCCTCGAGGCTCCGGCATAGGCCTGAGAAAGCCGTGCCGGAGCTGCCCCTGTGCCTGCTACTAAATGAATTGCGGTGGGTGA|GGTGGCAGCTGGAGACACTGGGCCAGGAGAAGCTGAAGCTGGAGGCGGAGCTTGGCAACATGCAGGGGCTGGTGGAGGACTTCAAGAAC	5	0.525604192486025	0.307484856536013	0.597125161312542	N	N	3.26038626667377	3.22440257402473	3.22440257402473	splitr	13	0.134831460674157	0.134831460674157	0	N	0.191011235955056	N	N	83603	51	ENSG00000130600	ENSG00000178184	-	+	11	18	2022700	78005429	intron	downstream	H19	PARD6G	2016406	77915115	-	-	0.134831460674157	2018296	41901750	+	+	Y	-	-	N	SKBR3_13_2_1	9	0	8	7	2	1	N	N	0	0	2	0.827783467410055	0.645671104579843	0.827783467410055	0.645671104579843	2	-	-	0.60524179975777
131038	GTGGCCAACTCAGCTTTTGTGGAGCGAGTGCGGAAACGGGGCTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGAATTTGATGGGAAGAGCCTGGTCTCAGTTACCAAGGAGGGTCTGGAGCTGCCTGAGGATGAGGAGGAGAAGAAGAAGA|GGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAG	5	1	0.585844953641688	0.913872455226073	N	N	3.02030743866642	2.26583647183873	2.26583647183873	splitr	15	0.0779220779220779	0.0779220779220779	0	N	0.974025974025974	N	N	21328	14698	ENSG00000096384	ENSG00000187514	+	-	6	2	44221620	232578251	coding	coding	HSP90AB1	PTMA	44214824	232571605	+	+	0.0779220779220779	44219930	232576650	+	-	Y	-	-	N	SKBR3_13_2_1	8	0.652777777777778	6.5	5	2	1	Y	N	0	0.652777777777778	2	0.620837600557541	0.596004096535239	0.620837600557541	0.596004096535239	0	-	-	0.60524179975777
134108	CTGTGCGGACATGCTCGTCGCTGCGCAGGTCTTTTTTGTTGGCCACCAGGATGATGGGCACATTGGGACAGAAGTGCTTCACCTCGGGGACCCACTTCTCGGGGATGTTCTCCAGCGAGTCCGGGCTGTCCACCGAGAAGCACATGAGAATGACGTCGGTGTCCGGGTAGGAGAGCGGCCGCAGG|TGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAACATGGGT	4	0.843835262614011	0.121019715692043	0.221082376031908	N	N	3.47825217735525	3.5319270478477	3.47825217735525	splitr	14	0	0	0	N	0	Y	N	6449	0	ENSG00000143878	ENSG00000252318	-	+	2	2	20649200	133038738	coding	intron	RHOB	AC097532.1	20646835	133038647	+	-	0	20647430	133038719	-	+	N	-	1	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	0	1	2	0.44700307240143	0.562892757838837	0.562892757838837	0.44700307240143	1	-	0	0.60524179975777
79641	CCTCGTCCAACCAGCTGCCACGTCCTGTAACCAAAAGTGACCGGGATGAATGCCTGGCTCCCCCTTCTTTCCAGCCCTAGCTCAGGCCCATCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCAC|CAGCCCTAGCCCCTCAGCCCACCCACGGGAGAGTTTACTGACTGGGGACCGCACTTGCCCATGCCTCCAGCTACAAAACAATTCAATTGCTTTTTTTTTTGGTCCAAAATAAAACCTCAGCTAGCTTTAACACACACACACACAC	3	0.51836554573936	0.204269397646567	0.357980465865342	N	N	3.09144009328749	3.20344435300231	3.09144009328749	splitr	15	0.103448275862069	0.103448275862069	0	N	0.144827586206897	N	N	83603	0	ENSG00000130600	ENSG00000183230	-	+	11	10	2022700	69455927	intron	intron	H19	CTNNA3	2016406	67679719	-	-	0.103448275862069	2018888	69423240	+	+	Y	-	1	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	6	1.23339736644098	0.521503584468335	1.23339736644098	0.521503584468335	1	-	0	0.60524179975777
115822	CCTTACCCCCCACTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTC|CTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAAACACAAACTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCAT	2	0.613719197459347	0.419771231117896	0.626856592055952	N	N	3.62042420064156	3.0139852288677	3.0139852288677	splitr	9	0	0	0	N	0.012987012987013	Y	N	93473	3466	ENSG00000198886	ENSG00000228253	+	-	MT	MT	12137	8572	coding	coding	MT-ND4	J01415.25	10760	8366	+	+	0	11938	8414	+	-	N	0.855544447096689	-	N	SKBR3_13_2_1	4	0	3	2	2	2	Y	N	0	0	2	0.703615947298547	0.827783467410055	0.827783467410055	0.703615947298547	2	8089	-	0.60524179975777
134703	GAGACAAAGATCTTCGGCCAGTTTTGGTGGGGAATTTGGTGAACTCCTGCATGTCATCAGCAAACTGGATTTGCTTCTTGGGCGCCTTGGTGACGGTGGCCATGAAGGAGTACTTCTCGGCGTCCTCGATCTCCTTGGCCTGCTTCAGCTCCTCCCCGACCCCGGGCAGCGGCATCGCGTCAGGCATCGACATTCCCCGGCCGGCCCGGCCAGCGGCTGACCCGCCGCCCCCGCC|CTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGGTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTACACTCATGAGCT	1	2.35068937669143e-09	0.375556752806067	0.399915574091196	N	N	2.55186835830596	3.52936639476796	2.55186835830596	splitr	4	0.0170212765957447	0	0	N	0.0212765957446808	N	N	3129	3	ENSG00000168710	ENSG00000230021	-	-	1	1	110566357	659930	utr5p	intron	AHCYL1	RP5-857K21.4	110527308	536816	+	-	0.0170212765957447	110527633	568368	-	-	N	-	0.828962371721779	Y	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.538059253816536	0.778116459365451	0.778116459365451	0.538059253816536	1	-	0	0.60524179975777
141624	TATTTAGCTTTCTGACTCTGTGCTTGTGCCTTCAACACTTTCACAACGATTTTCTGCTCCTCGATAAGGAAAGCACGCTTGATCCTGTCACGAACACATTTAGCACACATGGAACCACCATAGGCCCTGCTGACATGTTTCTTTGTTTTG|TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCT	1	0.00790693597395111	0.165454740358851	0.104411461690874	N	N	3.49640736351508	3.69106234172268	3.49640736351508	splitr	0	0	0	0	N	0.00666666666666671	N	N	7233	0	ENSG00000109475	ENSG00000212932	-	-	4	21	109551568	48111157	coding	upstream	RPL34	RPL23AP4	109541722	48110676	+	+	0	109543709	9827005	-	-	Y	-	-	N	SKBR3_13_2_1	24	1	20	16	2	1	N	N	0	1	2	0.513225749794234	0.488392245771932	0.513225749794234	0.488392245771932	1	-	-	0.60524179975777
127392	CTCCCACTCCATCTCCAGCCAACCGGCTCTCCTCGCCCTCCAGCAGCTTGCGGTAGGTGGCGATCTCGATGTCCAGGGCCA|AGCAGGACATGGGCGGCAGCTGCGTGAGTACCAGGAGCTGATGAACGTCAAGCTGCCCTGGACATCGAGATCGCCACCTACAGCTGCTGGAGGGCGAGGAGAGCCGGCTGGAGTCTGGGATGCAGAACATGAGTATCCGTACGAAGACCACCAGCGGCTATGCAGGTGGTCTGAGCTCGACCTA	8	1	0.0376159275429214	0.065693377879959	N	N	3.6272104187567	3.41207299502431	3.41207299502431	splitr	6	0.0987654320987652	0.0370370370370369	0	N	0.0493827160493825	N	N	34840	0	ENSG00000135480	ENSG00000250148	-	+	12	5	52662180	60040797	coding	intron	KRT7	RP11-109B6.2	52626954	60039390	+	-	0.0987654320987652	52639359	60039743	-	+	Y	-	1	N	SKBR3_13_2_1	60	0	48	36	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
141516	CCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTC|CTGCACCACCAACTGCTTAGCACCCCTGGCCAAGGTCATCCATGACAACTTTGGTATCGTGGAAGGACTCATGACCATAGTCCACGCCATCACTGCCACCCAGAAGACTGT	2	1	0.628320794780147	0.834131705711819	N	N	3.50785087947327	3.51207644450867	3.50785087947327	splitr	11	0.0540540540540541	0.0540540540540541	0	N	0.0720720720720722	N	N	83603	0	ENSG00000130600	ENSG00000228232	-	+	11	X	2022700	39647390	intron	intron	H19	GAPDHP1	2016406	39646386	-	-	0.0540540540540541	2018980	39646938	+	+	Y	-	1	N	SKBR3_13_2_1	11	0	8.5	7	4	3	N	N	0	0	4	0.951950987521563	0.562892757838837	0.951950987521563	0.562892757838837	1	-	0	0.60524179975777
11591	CTGTCTGACCCAGGCCTGGGGTACCACCCCACGTGCTGGACCCTACGCTGGCCACCCCTGTGCTCCCTCCCTGCCCTCTTGCTCTTTCTGCCTGGAACGGGCCCATAACCCCCCAGCCTTGCGCAGTCTCGGCTCCCCCCGAGAAGATGTCACCTTTGCTAACTCTCCTGCCCCCATCCTGCCCCTCTGCTGGGAGGGTG|TCTGCTTCCTAGTCCTGTACGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTC	1	0.000200100401730373	0.899266171301115	0.897571427984624	N	N	3.03020225656374	3.35356364524965	3.03020225656374	splitr	8	1.11022302462516e-16	0	0	N	0.05	N	N	83603	3	ENSG00000130600	ENSG00000230021	-	-	11	1	2022700	659930	intron	intron	H19	RP5-857K21.4	2016406	536816	-	-	1.11022302462516e-16	2018541	568237	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	2	7	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	0	-	0	0.60524179975777
134521	AGGATCTCATTCAGTTTCTTGATAACAACAGCATGGGTGATCTCAGTTCCCTTGGCAAACATTTTTGGCTTCTCCTTAACCAACGGCACTCCGCCCCGGACCCTTTCCCACTCCCCGCCTTCATTGTCCTCCTCCTCCTCCTCATCCAGGCGCTTGGATTTCCTGTCGTGCTTCTTCTTAGCTTTGTCCTCCCGTTTCTTCTCGGCTGCCTTCTTGTCCTCATC|GCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAAC	1	0.132038178807966	0.375556752806067	0.399915574091196	N	N	3.02228968272288	3.43511609362884	3.02228968272288	splitr	9	0	0	0	N	0	N	N	6971	3	ENSG00000205609	ENSG00000230021	-	-	16	1	28415200	659930	coding	intron	EIF3CL	RP5-857K21.4	28390900	536816	-	-	0	28403450	568365	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	4	0	4	4	2	1	N	N	0	0	2	0.827783467410055	0.612559765883441	0.827783467410055	0.612559765883441	1	-	0	0.60524179975777
125577	GTGCAGCCACACACACCCACACTCACTCACACCCACACCCACACGCACACCCACTACACACACACACACACACAC|ACACACACACACACACACACACACGGACATGCACACACGGACATGGGAAGGCAATGCTATGCTGCCCGTCAGGGCACTGTCCTTCCCCAATCGTTCAGGTGTTCCAACAGGGGTGGAGGGCCTGGAGGAGCACCCGCTGTCACCTGTGCATGTGCCTGTCCCACCCTGCTGGGGCCTCGGGCTGC	3	1	0.974840299367967	0.746797872653879	N	N	1.8193980298404	2.03916224619231	1.8193980298404	splitr	56	0.213333333333333	0.213333333333333	0	N	0.186666666666666	N	N	681	1431	ENSG00000130165	ENSG00000126351	-	-	19	17	11670051	38250120	utr3p	utr3p	ELOF1	THRA	11663858	38218446	-	+	0.213333333333333	11664417	38247501	+	-	Y	-	1.19977925087391	N	SKBR3_13_2_1	12	0.938775510204082	6.5	1	1	1	N	N	0.938775510204082	0	2	0.811227798061854	0.413891733705027	0.811227798061854	0.413891733705027	3	-	30	0.60524179975777
129872	CATCTTCAACTGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGA|GTCAAAGTGAAGAAATTCAATGAAGCACGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTTGTCATCTAATTAGTGACGCACATGAATGGATGAACGAGA	1	0.0300099456298695	0.20555784636729	0.155228020814782	N	N	3.43681151080804	3.4283298755137	3.4283298755137	splitr	0	0	0	0.25	N	0.03921568627451	N	N	0	356	ENSG00000251948	ENSG00000149262	+	-	19	11	24184165	77705724	intron	intron	AC092279.1	INTS4	24184075	77589766	-	-	0	24184119	77597532	+	-	Y	1	1.69881089015784	N	SKBR3_13_2_1	6	1	4.5	3	4	1	N	N	1	1	4	0.587726261861139	1.00989583024027	1.00989583024027	0.587726261861139	3	0	3.75	0.60524179975777
112669	AGGCCTCCGAAGGACGACGTGGCCGACGACTGGCGATAGCTGTAGGAAGTCATGGCGAGGCGGAGCACGGACGGAGCAACCCTGGTCTCAGAAGCTGCGATTCGCGGGAGGAGCGGCGAGGCCCTCACCTGGCG|CCTGGGAAGGTTCCCGTCCAGAAACTCAAATTGTCCTCCTCGGATGCAGGGGTCTTGGACACTGCAAGCATTTTCACTGAACACCCGCTGTATGCTGGAGGCCACCTCCACCCGGCGTTGGCCAGAGCATCCTCCCTGCCTACCTGCCCCCTCCCTTTACCTGGATGGCAGCCATGCCAGCTCCTCTCAGTTCCATTGGC	3	1	0.672179231214042	0.451731126833041	N	Y	3.3184850412945	3.39128260787123	3.3184850412945	splitr	334	1	0	0	Y	0	N	N	58670	31	ENSG00000171345	ENSG00000232938	+	-	17	17	39684560	81188573	upstream	upstream	KRT19	AC139099.1	39679869	81174666	-	+	0	39684580	39693064	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	5	1.19200819307048	1.38239839057479	1.38239839057479	1.19200819307048	1	-	-	0.60524179975777
69096	AGGGAGCCCAAGGCAGACAGCAGGCCAGCCTGAATGAAATGAGTGACCATATGGACATAGGCCCCTGCAGCCGCCACAAACATACAAAGGGCAAAACTTGCATAGACCTTCTTCAGGTGCTGCTGCGTTGACGGGGTTATATGAGAAAATTTTAAAAGCGCATCAAAGTTGATCTTTCGATCAAATATGTTCATGGTTCCAGAGTCCGTGCAGCAGTCT|CCACTCATCCTAACCCTACTCCTAATCACATAATCTATTCCCCCGAGCAATCTCTAGTACAATATACACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAAAGCCCCCGCACCAATAGGATCCTCCCG	1	0.0321144214477522	0.321839855309698	0.321669634186996	N	N	3.57080706131517	3.02183502197627	3.02183502197627	splitr	16	0.0392156862745098	0.0980392156862745	0	N	0.137254901960784	N	N	7764	31	ENSG00000139644	ENSG00000132570	-	+	12	5	50158717	134343649	coding	intron	TMBIM6	PCBD2	50135293	134240596	+	+	0	50146252	134260370	-	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.438725237727329	0.827783467410055	0.438725237727329	2	-	1	0.60524179975777
61431	ACTTTGTAAAGCAGCATCAGCAGCAACATTTCCCAGAGAAGTATCTTGACCTTTGGCCCATGACTAGTTTCTCCATATCAATCATGAGATATACACAT|CTCGCCCGGCAGTGGGAACCATTTTCCGAGGGGGAAGGAAAGGCAGGCTGCGGGAGGGTCGCGGGGCGTTAAGGGGCAGCGGGAAACGCAGAGGATGGGGGCTCCGTCCTC	2	0.750648629598655	0.628320794780147	0.834131705711819	N	Y	3.32886498225927	3.41216628098015	3.32886498225927	splitr	209	1	0	0	Y	0.989795918367347	N	N	521	0	ENSG00000070961	ENSG00000227059	+	-	12	12	90049844	133812681	upstream	downstream	ATP2B1	AC226150.2	89981828	133794898	-	-	0	90049884	90102373	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	2	N	N	0	0	3	0.546337088490636	0.943673152847462	0.943673152847462	0.546337088490636	4	-	-	0.60524179975777
90677	GAATCTTCTTGTGATTGTGGGTGGTGGCTGGAGGAGTGGAGTGGTGGGAGGCGGCTCAGTCGCGGGCACTCCTGCGACTGGCGGATGCGGTCCGGATGGAATAAGCCTTCAGGAGCCCAGGACCCGCACTGCTGGAGAAGCTCAGGGCATTGCTGCCCATGGTTCCCCCGAGGGTCAGCCCAATGCCACCGCCACTGCTACTGCCACCAGTGGAATTCATCACAGAGATATTCACGGCTCCCACTCCATCTCCAGCCAA|CCCGCCCCCCCCCCCGCCACTGCTATGCTATAGCTGGGGGTGTCTATGT	1	0.195726645975416	0.254583648908217	0.223418152789081	N	N	3.45293525254824	2.79683509875802	2.79683509875802	splitr	2	0.0408163265306121	0.0408163265306121	0	N	0.183673469387755	N	N	34840	1042	ENSG00000135480	ENSG00000163812	-	+	12	3	52662180	45017677	coding	intron	KRT7	ZDHHC3	52626954	44956749	+	-	0.0408163265306121	52641962	44959740	-	+	Y	-	0.309160316699941	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.819505632735954	0.422169568379128	0.819505632735954	0.422169568379128	3	-	3.5	0.60524179975777
109075	TCAACTACCTAACCAACAAACTTAAAATAAAATCCCCACTATGCACATTTTATTTCTCCAACATACTCGGATTCTACCCTAGCATCACACACCGCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACT|CCTCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTGTCTCCTCTATCTTAGGGGCCATCAATTTCATCACAACAATTATCAATATAAAACCCCCTGCCATAACCCAATACCAAACGCCCCTCTTCGTCTGATCCGT	2	0.885565552152976	0.572228613671423	0.790699370883283	N	N	3.45868840089349	3.57952209032428	3.45868840089349	splitr	22	0.112676056338028	0.112676056338028	0	N	0.112676056338028	Y	N	54817	121749	ENSG00000198786	ENSG00000198804	+	-	MT	MT	14148	7445	coding	coding	MT-ND5	MT-CO1	12337	5904	+	+	0.112676056338028	13988	6325	+	-	N	-	-	N	SKBR3_13_2_1	3	0	2.5	2	2	3	Y	N	0	0	2	0.827783467410055	0.728449451320848	0.827783467410055	0.728449451320848	2	-	-	0.60524179975777
139962	GTGGGACAGCAGCTCAAAGGAGTTCATCACCTCGATATTTCGGCCCTCCTGCTTGCCAATCAGAGCCCCAATCACCTGCACAGGCCGCCCCTCCTGGGAGCGCATGCGGATCCAGTGGTCTGAGATGTTGAGAATGACAAGGGGATGGAGAGCGACGGAAACACTCCCAGTCACTCCGCAGGCCATCACGCTGGGGACTACTGCTGCATCCACCTCCATCCCGCTGCTTCCTCCGGTCCCGTTCGTAGCTGCAGCCGCCGCC|GCCGCCGCCGCCATTTTCCCAGAGCGAGAGGCAGTGACACT	1	0.885594410479535	0.899266171301115	0.897571427984624	N	Y	3.26460248413936	3.30335451653084	3.26460248413936	splitr	29	0.487804878048781	0.487804878048781	0	N	0.512195121951219	N	N	2304	23	ENSG00000168090	ENSG00000239569	-	-	7	7	99689823	104654768	coding	intron	COPS6	RP11-325F22.4	99686577	104653872	+	-	0.487804878048781	99686628	104654632	-	-	N	-	1.36354933558225	Y	SKBR3_13_2_1	2	0.849056603773585	1.33333333333333	1	1	1	N	N	0	0.849056603773585	3	1.22511953176688	0.438725237727329	1.22511953176688	0.438725237727329	1	-	0	0.60524179975777
105991	GAACTATAAAGATGTCTGTGGTCATATGTTGAATGTGGCAGCTTGAAGATGTACTGCCACGGGTGATCTAGGGCAGGCTGTCTTCCAGTCCATGTGTTCTCGGTCGCCGTAGACAGCGCTCTGGCTACCACCGTGAGGCTACTTGAACTGTCAGGGGCATCTGCCTAAACCAGAATCTTTTGTCAGAAACCTTAACCCAACAAAACAAATCTTGAGTAGCTCATGCCCGGCTCTTAGGAATTTTGTCTGTTT|AAAAAAAAAAAAAAAAAAAAGTCAGAAAAGTGGCAAAAGTCTTCAACG	1	0.320671780809059	0.800133926999915	0.844771979185218	N	Y	3.57063922744582	2.04957450556854	2.04957450556854	splitr	23	0.479166666666666	0.416666666666666	0	N	0.479166666666666	N	N	902	0	ENSG00000168092	ENSG00000226445	+	-	11	6	117047610	169639660	utr3p	intron	PAFAH1B2	XXyac-YX65C7_A.2	117014983	169613349	+	+	0.479166666666666	117041342	169613434	+	-	Y	-	-	N	SKBR3_13_2_1	63	0.42	36	9	2	1	N	N	0	0.42	2	0.769838624691351	0.413891733705027	0.769838624691351	0.413891733705027	1	-	-	0.60524179975777
72979	CATTTCCCGCGCCCCACCGCGGGGCGGGGATTCGGCGCTGGGCTCTTCCCTGTTCACTCGCCATTACTGAGGGAATCCTGGTTAGTTTCTTTTCCTCCGCTGACAAATATGCTTAAATTCAGCGGGTCGCCACGTCTGATCTGAGGTCGCGGGCCTCGATCAGAAGGACTTGGGCCCCACACGAGCGGCGCCGGGGAGTGGGTCTTCCGTACGCCACAT|GTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCATGGAACACATCCACAAGCTGAAGGCAGACAAGGCCCGCAAGAAGCTCCTGGCGTAAGT	4	0.0223415570479802	0.355287289501461	0.102116714308385	N	N	3.56488607910057	3.707857778442	3.56488607910057	splitr	7	0	0	0	Y	0	N	N	0	129759	ENSG00000141161	ENSG00000108298	+	-	17	17	33516364	37360980	intron	coding	UNC45B	RPL19	33474836	37356536	+	+	0	33478343	37360330	+	-	N	1	0.733398991287448	N	SKBR3_13_2_1	6	1	5	4	2	2	N	N	1	0	2	0.670504608602144	0.471836576423731	0.670504608602144	0.471836576423731	3	0	17640.5	0.60524179975777
137654	GTTCTGGCATCCATTTGCGTTACTCAGGCATTTATGATGTGGAAGTTCATTAATTTTCAGCTTCGAAGGTGGAGGGAACATTCTGCTTTTCAGGCACCAGCTGTGAAGAAGAAACCAACAGTAACTAAAGGCAGATCTTCTAAAAAAGGAACAG|ATCTGTAACTCCAGAGCCGAAGTGCTTCACCCACCTCCCTGTGGTGCCTCTACAGAAAAAGAGGTAAGCAGGCATTCCGAAAGCTGGTGGGCCGGGGGGCTGGCCTTGTACTCAGAAGCCATGGAAGTCCCACGTGGGGTGGCTAGTGGTGTAAGGACAGAGGTCTCGGATGGGCAGAGGGATGT	21	1	0.183925912154161	0.389213589838811	N	N	3.35253057547976	3.59169073442408	3.35253057547976	splitr	4	0	0.012987012987013	0	N	0	N	N	2719	799	ENSG00000067167	ENSG00000182307	-	-	8	8	71520622	146281416	coding	upstream	TRAM1	C8orf33	71485677	146277764	-	+	0.0194805194805197	71495399	86838659	-	-	N	0.19419622158522	-	Y	SKBR3_13_2_1	11	0.124183006535948	11	11	17	1	N	N	0	0.124183006535948	17	1.29962004383379	1.26650870513738	1.29962004383379	1.26650870513738	4	7.17647058823529	-	0.60524179975777
99208	ATTTTTTAGGTGGACAGGAAGTAGAATTTATTGGTGAGTATTAAGAGGGGGGCAGCACATTGGAAGCCCTCATGAGTGCAGGG|CCCCCCTCCTAATACTAACTACCTGACTCCTGCCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAATGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATGACATTCACAGCCATAGAACTAATCATATTTTATATCTTCTTCGAAA	2	1	0.196734923242299	0.258789252325421	N	N	3.250006325709	2.92076799749848	2.92076799749848	splitr	3	2.22044604925031e-16	0	0	N	0.036144578313253	N	N	0	31	ENSG00000178464	ENSG00000132570	+	+	19	5	12754733	134343649	intron	intron	CTD-2192J16.15	PCBD2	12754089	134240596	-	+	2.22044604925031e-16	12754102	134263539	+	+	Y	1	1.2575464834446	N	SKBR3_13_2_1	12	0	10	8	2	1	N	N	0	0	2	0.554614923164737	0.827783467410055	0.827783467410055	0.554614923164737	1	0	1	0.60524179975777
73162	TCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCG|GGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGG	58	0.000305043742319826	0.0557714760741431	0.224889093126629	N	N	3.57063922744582	3.16935896602371	3.16935896602371	splitr	2	0.0105820105820107	0	0	N	0.100529100529101	N	N	0	0	ENSG00000212932	ENSG00000162669	+	+	21	1	48111157	91870426	upstream	intron	RPL23AP4	HFM1	48110676	91726323	+	-	0.0105820105820107	9827204	91853144	+	+	Y	-	1	N	SKBR3_13_2_1	4	1	2	1	1	2	N	N	1	1	3	0.728449451320848	1.24167520111508	1.24167520111508	0.728449451320848	1	-	0	0.60524179975777
131997	AGGCGGCGGCGGCGGTGGCGGGAGAAGGCGGGCAGGGGGGAACGGAACGTCGGGAAGCGAGGGGGCTCAAGGGGGAGGCTGCTGAATCCTCGGCGGCGGCTCAGTGACT|GGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGG	1	1	1	0.935920242646516	N	N	3.41170227266373	3.32064446679012	3.32064446679012	splitr	2	1.11022302462516e-16	0	0	N	0.0825688073394495	N	N	8885	0	ENSG00000173812	ENSG00000162669	-	+	17	1	39848920	91870426	intron	intron	EIF1	HFM1	39845137	91726323	+	-	1.11022302462516e-16	39845142	91853132	-	+	Y	0.0173668613265929	1	N	SKBR3_13_2_1	1	0.927777777777778	1	1	0	1	N	N	0	0.927777777777778	2	0.554614923164737	0.827783467410055	0.827783467410055	0.554614923164737	1	3.5	0	0.60524179975777
55538	GTTCAAAAACAAGCGGATTCTCATGGAACACATCCACAAGCTGAAGGCAGACAAGGCCCGCAAGAAGCTCCTGGCTGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGAAATAAAACCTCCCACTTTGTCTGTACATACTGGCC|TCAGTGAATAAACAATCAGAGTAGTGGTATTTCACCTCTGGCCTTGCCCCACTCTGTCCCCTTGCTGGGACAGGGGGGCACCAGGGGCCTCCCACTTATTCTACACTTCTCATGGCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCGGATTCCACCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGAACGTCACTAATTAGATGACTAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC	1	3.23688397381423e-07	0.321839855309698	0.321669634186996	N	N	3.48639814491089	3.55231620741665	3.48639814491089	splitr	10	0	0	0.333333333333333	N	0	N	N	129759	0	ENSG00000108298	ENSG00000198626	+	+	17	1	37360980	238129359	utr3p	intron	RPL19	RYR2	37356536	237205505	+	+	0	37360931	237766712	+	+	Y	-	1	N	SKBR3_13_2_1	18	1	12.6666666666667	10	3	1	N	N	0	1	3	1.04300716893667	0.877450475454658	1.04300716893667	0.877450475454658	1	-	0	0.60524179975777
67047	TCCGTCTCATTGAGGGTCCTGAGGAAGTTGATCTCATCATTCAGGGCATCCACCTTGGCCTC|CAGCATCCCCACCTATGGCCTGCAGTGCACCCGAGCTGCGCCCCTTGACAGCATCCA	2	0.00524934463970928	0.196734923242299	0.258789252325421	N	N	3.55657227767559	3.41848849077886	3.41848849077886	splitr	21	0.157894736842105	0.175438596491228	0	N	0.350877192982456	N	N	34840	94538	ENSG00000135480	ENSG00000169710	-	-	12	17	52662180	80056106	coding	coding	KRT7	FASN	52626954	80036215	+	-	0.157894736842105	52632500	80038602	-	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	3	0.852616971432356	0.769838624691351	0.852616971432356	0.769838624691351	1	-	-	0.60524179975777
124823	GGTTGAAGGAACTACACAGGATCAGGAGACAGAATAATATGGTGGCCTCTTTGGTGGTAGTCTGAGAAGTCTTCTTGGAGGAGGTGACATTTGAG|ATTTCTGGAGGCTGACGTCCAAGATTAAGATGTCATCAGGGTTGGTTTCTGCTTTTCATTTTTGAAACGGAGTCTTGCTCTGCTACCTAGGCTGGAGTGCAGTGGCACCATCTTGGTTGCACTGCAACCTCCACCTCCCAGATTCAAGCAATTCTCGTGCCTCAGCTT	1	1	0.254583648908217	0.223418152789081	N	Y	3.37336081542618	3.75847748231474	3.37336081542618	splitr	263	0	0	0	Y	0	N	N	0	0	ENSG00000090661	ENSG00000213753	+	-	19	19	8327305	59111168	intron	upstream	LASS4	AC016629.2	8274228	59084870	+	+	0	8304969	8358690	+	-	N	1	-	N	SKBR3_13_2_1	10	1	6	2	2	2	N	N	1	0.842465753424658	2	0.75328295534315	0.827783467410055	0.827783467410055	0.75328295534315	4	0	-	0.60524179975777
141736	CGCCACATGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCATGGAACACATCCACAAGCTGAAGGCAGACAAGGCCCGCAAGAAGCTCCTGGCTGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCTCCAGGCCAAGAAGGA|AGAGACAAAAAAAAAAAACCCTTCAAAAATCAATGAATCCAGGAG	3	1	0.226651492638844	0.404166281443956	N	Y	3.4131060647942	2.70791379044108	2.70791379044108	splitr	242	0	0.0888888888888889	0	N	0.555555555555556	N	N	129759	1	ENSG00000108298	ENSG00000233191	+	-	17	7	37360980	157309535	coding	upstream	RPL19	AC006372.6	37356536	157305988	+	+	0	37360855	157302792	+	-	Y	-	-	N	SKBR3_13_2_1	130	1	95	60	2	1	N	N	0	1	2	0.794672128713653	0.413891733705027	0.794672128713653	0.413891733705027	3	-	-	0.60524179975777
98011	ACTGCAGGCCACCTACTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCT|TAATCCAAGCCTCACCCCACTACTAGGCCTCCTCCTAGCAGCAGCAGGCAAATCAGCCCAATTAGGTCTCCACCCCTGACTCCCCTCAGCCATAGAAGGCCCCA	1	0.353779047944683	0.526775457519482	0.600084425908804	N	Y	3.52779895866475	3.21588108593705	3.21588108593705	splitr	234	1	0.115384615384615	0	Y	0.269230769230769	N	N	38194	54817	ENSG00000198899	ENSG00000198786	+	-	MT	MT	9207	14148	coding	coding	MT-ATP6	MT-ND5	8527	12337	+	+	0.096153846153846	9148	12954	+	-	N	-	-	N	SKBR3_13_2_1	4	0	2.33333333333333	2	6	1	N	N	0	0	6	1.5065659106863	0.844339136758256	1.5065659106863	0.844339136758256	1	-	-	0.60524179975777
136981	GGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGA|GGAGAAGGAACGAGAGAAGGAAATTAGTGATGATGAGGCAGAGGAAGAGAAAGGTGAGAAAGAAGAGGAAGATAAAGATGATGAAGAAAAACCCAAGATCGAAGATGTGGGTTCAGATGAGGAGGATGACAGCGGTAAGGATAAGAAGAAGAAAACTAAGAAGATCAAAGAGAAATACATTGATCAGGAAGAACTAAACAAGACCAAGCCTATTTGGACCAGAAAC	2	0.17349674738407	0.226190941649262	0.313727891882291	N	N	2.48311911155744	3.14012163869645	2.48311911155744	splitr	3	0	0	0	N	0.0377358490566038	N	N	14698	21328	ENSG00000187514	ENSG00000096384	+	-	2	6	232578251	44221620	coding	coding	PTMA	HSP90AB1	232571605	44214824	+	+	0	232577162	44218030	+	-	Y	-	-	N	SKBR3_13_2_1	21	0.746341463414634	14.3333333333333	6	3	1	Y	N	0.237704918032787	0.746341463414634	3	1.00989583024027	1.24167520111508	1.24167520111508	1.00989583024027	2	-	-	0.60524179975777
115252	CTGAACGCAGGCACATACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACA|AAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATG	1	1	0.643852252817398	0.724188501798865	N	N	3.0904070235176	3.28466077414108	3.0904070235176	splitr	12	0.146341463414634	0.146341463414634	0	N	0.304878048780488	Y	N	93473	58402	ENSG00000198886	ENSG00000198712	+	-	MT	MT	12137	8269	coding	coding	MT-ND4	MT-CO2	10760	7586	+	+	0.146341463414634	11267	7730	+	-	N	0.744089693369615	-	N	SKBR3_13_2_1	2	0	2	2	2	2	N	N	0	0	2	0.44700307240143	0.827783467410055	0.827783467410055	0.44700307240143	1	6309.5	-	0.60524179975777
126388	CAAAGCTGGGAAGATGTGTTCTGGAAAGTTAGAGCCTGCATATCCACACTTCACAAACCCGGTGCCGTTGTCGCACACCACCACCTTCCTGCCCTGGCTGTCCATCGTCCGCCCAGGGAAGAGCCGCTGCAGCCGCACAACCTACAGCCACCGCCGCCCGGCC|CTGGAGGCTGCCCAGGCCGAGCTGCAGCAGCACGACGTTGCCCAGGGCCAGTGGGATC	1	1	0.321839855309698	0.321669634186996	N	N	3.01605136840748	3.3478104969044	3.01605136840748	splitr	4	1.11022302462516e-16	1.11022302462516e-16	0	N	0.017241379310345	N	N	4640	94538	ENSG00000138071	ENSG00000169710	-	+	2	17	65498387	80056106	utr5p	coding	ACTR2	FASN	65454887	80036215	+	-	0	65454986	80043642	-	+	Y	-	1.09431433508573	N	SKBR3_13_2_1	2	0	1.5	1	1	1	N	N	0	0	2	0.653948939253943	0.480114411097832	0.653948939253943	0.480114411097832	2	-	747	0.60524179975777
83885	GCCACTTATCCAGTGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATAACATTCACAGCCACAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACA|AAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACT	1	4.53374582194311e-06	0.643852252817398	0.724188501798865	N	N	3.0904070235176	3.28466077414108	3.0904070235176	splitr	12	0	0	0	N	0.0327102803738316	Y	N	93473	58402	ENSG00000198886	ENSG00000198712	+	-	MT	MT	12137	8269	coding	coding	MT-ND4	MT-CO2	10760	7586	+	+	0	11267	7730	+	-	N	-	-	N	SKBR3_13_2_1	4	0	3	2	2	2	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
107279	GAGATCTTGGGCACCGAGAGGGACTACGTGGGCACCTTGCGCTTCTTGCAGTCGGCATTCCTGCATCGCATCCGGCAGAACGTGGCCGACTCAGTGGAGAAGGGCCTCACGGAGGAGAATGTCAAGG|CATCCAGGGCATTGTGGATGCCTACCGCCAAGCCCTGCCCCAAGTTCGCCTCTATGGCCCTACCAACTTTGCACCCATCATCAACCATGTGGCCAGGTTTGCAGCCCAGGCTGCACATCAGGGGACTGCCT	1	1	0.163782765099475	0.102428735043176	N	N	3.48593413659447	3.49744043328497	3.48593413659447	splitr	3	0.102362204724409	0.0236220472440946	0	Y	0.0236220472440946	N	Y	5637	1262	ENSG00000124126	ENSG00000214078	+	-	20	20	47444420	34252878	coding	coding	PREX1	CPNE1	47240790	34213953	-	-	0.0236220472440946	47364346	34215335	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	Y	N	0	0	5	0.562892757838837	0.90228397947696	0.90228397947696	0.562892757838837	4	-	-	0.60524179975777
98857	CAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCCGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCACCACCACGCCCGGCTAATTTTTTGTACTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATACACCCGCCTCGGCCTCCCAAAGTGCT|GGGATTACAGGCGTGAGCCACTGCGCCCAGCCTCATCACTGATATTTATTA	1	1	0.12875022366714	0.0640797573534845	N	Y	3.52001952357308	3.62361669590707	3.52001952357308	splitr	240	0.764705882352941	0.588235294117647	0.5	N	0.647058823529412	N	N	258	11	ENSG00000146263	ENSG00000006837	-	+	6	5	97731093	133706738	intron	intron	MMS22L	CDKL3	97590037	133541305	-	-	0.764705882352941	97711851	133593426	+	+	Y	-	2.08513955655895	N	SKBR3_13_2_1	627	1	341	55	2	1	N	N	1	0.930555555555556	2	0.596004096535239	0.596004096535239	0.596004096535239	0.596004096535239	1	-	0	0.60524179975777
139728	AGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAA|TGCAAGTCTGGAGAAATATAGCTGGGAGTCAGTAATGCCAGTTTTAGCTGAGGGAGTTAAGATCATTTAATCAGTGTTAAGGAAGAAACTCAATAGTAGTGACCACCAATACTTAAGGAAAAAGGATAAAGTAAGAGGAATGATAAAGGCTGGCTGAAATATCTTGGTGTCTAGCCTAAGAAAGGAGGGGTTAGATGCTCATGTTTATTAATATGGATCTAGAGAAG	2	0.899552451125161	0.871805782194921	0.947136850676906	N	Y	2.55303456682504	3.50425715662364	2.55303456682504	splitr	276	0	0.816326530612245	1	N	0.89795918367347	N	N	287	3815	ENSG00000135637	ENSG00000128050	+	+	2	4	74710535	57327534	utr3p	utr3p	CCDC142	PAICS	74699113	57301907	-	+	0	74701210	57326059	-	+	Y	-	-	N	SKBR3_13_2_1	59	0.5	40.5	22	2	1	N	N	0.5	0	2	0.430447403053228	0.430447403053228	0.430447403053228	0.430447403053228	3	-	-	0.60524179975777
141042	TCTCCATACTCCTCTTGGGTGATGTCATCAGGGTTTCTGGTCCAAATAGGCTTGGTCTTGTTTAGTTCTTCCTGATCAATGTATTTCTCTTTGATCTTCTTAGTTTTCTTCTTCTTATCCTTACCGCTGTCATCCTCCTCATCTGAACCCACATCTTCGATCTTGGGTTTT|TCTTCTTCTTTTTCATCCTTCTGTCTCTTTGTTTCTGAGCTTTCCTGTCTTTCCTTTTTTCTGAGAGATTCAAAGCCTCCACGACTCTGTTTCCCCCGTCCCTTCTGAATTTAATTTGCACTAAGTCATTTGCACTGGTTGGAGTTGTGGAGACGGCCTTGAGTCTCA	1	0.391460336660365	0.390564714822603	0.421349522516249	N	N	3.26932256271472	2.71931745360593	2.71931745360593	splitr	5	0.0297619047619048	0.0297619047619048	0	N	0.0714285714285713	N	N	21328	83603	ENSG00000096384	ENSG00000130600	-	+	6	11	44221620	2022700	coding	intron	HSP90AB1	H19	44214824	2016406	+	-	0.0297619047619048	44218117	2016829	-	+	Y	-	0.870940437347097	N	SKBR3_13_2_1	3	0.34375	2.33333333333333	2	3	1	N	N	0.34375	0	3	1.00989583024027	0.827783467410055	1.00989583024027	0.827783467410055	1	-	1230	0.60524179975777
141641	GGCCACATTGTGAACTTTGGGGGATGCTCGCTCCAACCGACTGC|CATCAAGTATTTCCTCACGCAAGCAACCGCATCCATAATCCTTC	1	0.00402086692143905	0.261533274614987	0.233421673643755	N	N	3.51679652308403	3.39653189510671	3.39653189510671	splitr	4	0.0909090909090909	0.0909090909090909	0	N	0.272727272727273	N	N	30285	0	ENSG00000075624	ENSG00000225630	-	-	7	1	5603415	566063	utr3p	intron	ACTB	RP5-857K21.8	5566782	565020	-	+	0.0909090909090909	5567212	565187	+	-	Y	-	1	N	SKBR3_13_2_1	12	0	12	12	2	1	N	N	0	0	2	0.413891733705027	0.44700307240143	0.44700307240143	0.413891733705027	1	-	0	0.60524179975777
121988	TCTTTTTTTCTTGTTTTTTTTTTTTTTTTTTT|AAATGGAGATAGGGTCTTAACTCTTGTCCAGGCTGGAGGAGTGCAGTCGTACAGTCATGGCTCACTGAAGTCTTGACCCCGCTGCCTCAGCCTCCCAAATAACTGGGGCCACAGGTGTGCACCACAACTCTCAGCTAATTTTTAAAATTTTTTATAGAGGTGGGGTTTTACTATGCTGTCCAGACTGGTCTTAAACTCCTGGGCTCAAGTGATCCCCCTGCCTTGGCCTCCCAAACTGGTGAGATTACAGGCATGAGCCAC	1	1	0.526775457519482	0.600084425908804	N	Y	1.35561334069408	3.60103760561896	1.35561334069408	splitr	0	0.53125	0.53125	0	N	0.59375	N	N	0	673	ENSG00000233084	ENSG00000144231	-	+	1	2	249231242	128615731	upstream	utr3p	AL672183.2	POLR2D	249230780	128603896	+	-	0.53125	43188174	128605207	-	+	Y	-	1.14632050449126	N	SKBR3_13_2_1	80	1	77.5	75	2	1	N	N	1	1	2	0.430447403053228	0.827783467410055	0.827783467410055	0.430447403053228	2	-	20.5	0.60524179975777
139383	TCTTGGGTTTAGGTGTTGTTCCTTCACGGAATCCATGCCTGAATCTGCGGTATACAATTTTTAGGTGCCTCATTCGACCAGTTCCGGTGGTATTTCGTCTTTTAGCCTTGGCACTCCAGTTATACTTTCTCTTGCGCTTGGCAGGGTAGCCACATTTGCCACAGGTCGACTTCTGAAGGTGGT|AGGGGAATGTGTTCAAAGACAAGCGGATTCTCATGGAACACATCCACAAGCTGAAGGCAGACAAGGCCCGCAAGAAGCTCCTGGCTGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCAGGCA	2	1	0.14642513198438	0.165868294288181	N	N	3.72551845106187	3.55231620741665	3.55231620741665	splitr	14	0.0232558139534884	0.0232558139534884	0	Y	0.0310077519379846	N	N	9626	0	ENSG00000145592	ENSG00000218227	-	-	5	5	40835437	177483195	coding	intron	RPL37	RP11-889L3.1	40825364	177482605	-	+	0.0232558139534884	40834632	177482987	+	-	N	-	1	N	SKBR3_13_2_1	44	0	32.5	21	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
138147	TGTCTAGTGATGAGTTTGCTAATACAATGCCAGTCAGGCCACCTACGGT|GAAATACTCATTTTACTATTATTCTATAAATTAGAAGTTACTTAGAGATACTTTTTGAAGCAAGTTCTTGTCATCAAAACAATACTCAGGCTCTCGACCTTAGCGCCATTTTCTTGGAAACCTCTGCGCCACGAGAGCCAAGTGGAGGAAGAAGCGAACGCGCAGGCTGAAGCGCCAAAGAAGAAAGATGAGGCAGAGGTCCAAGTAAACCGCTAGCTTGTTGCACCGTGGAGGCCACAGGAGCAGAAACATGGAACACCAGACGCTGGGGATGCTGGTACAAGTTGTGGGACTACATGCTACTGCCTAGAGCTTGTCTCAATGGATCTAGACCTTCATCGCCCTCTGATC	1	0.00109838040080145	0.526775457519482	0.600084425908804	N	N	3.81554318716558	3.01910653502718	3.01910653502718	splitr	4	0	0	0	N	0	N	N	0	0	ENSG00000237973	ENSG00000230199	-	-	1	1	567996	243138386	intron	upstream	RP5-857K21.6	RP11-331N16.1	566454	243138307	+	+	0	567499	243138177	-	-	N	1	-	Y	SKBR3_13_2_1	28	0	27	26	2	1	N	N	0	0	2	0.60428193120934	0.827783467410055	0.827783467410055	0.60428193120934	2	0	-	0.60524179975777
136626	ATTATTATTAGCCCGTCTCCTGTAAGGGCTGCTAGCCCAGAACACGCTCCGAGGATTCCCGGCTGGAGGTGGCCCAGCCATGCCAGACGGGACCGTCTGGGGCGGTGGCTGCATGACTGAACCCTTGCACAAGTCGATGCTGCTTACAGAAGGAAGCAGGATATAGCTGTTCCTTAATTGGAGC|GCTTGGCCCCGCCCCTCGCCACCTGCCCGGCCAGGCGCGCCGGGGCCGTCCCAGTACGTCGCCCTGTTTACGCTGGCTCTTTCTCCCAGTCTTTTTTCGTTTTAAGATGTGAGAAGAGATGGGATTCTTCAATCAAGGCCACAAGCGGGAAATCAGTCTGCAGGACCGATGCCAGCAGGCTCACGCACCGAGAACGGCTACTCCGCCCAGCTGAGAAGCGCGGGGCCCTGACGCGGGCGCGCTCCTCGCATTCTTCCGTTGGGCTGGGAGGCTGGAGGGCAGG	4	2.47919165177639e-07	0.845699811428604	0.16438324526142	Y	Y	3.71401215437137	2.88783947146914	2.88783947146914	splitr	467	0	0.00543478260869579	0	Y	0	N	N	3489	18	ENSG00000148396	ENSG00000196366	+	-	9	9	139372141	139380518	utr5p	utr5p	SEC16A	C9orf163	139334549	139377947	-	+	0	139372137	139377963	+	-	N	22.377510538061	0.652528964426071	N	SKBR3_13_2_1	1	0	1	1	0	2	N	Y	0	0	2	0.827783467410055	0.513225749794234	0.827783467410055	0.513225749794234	1	0.5	0.5	0.60524179975777
44417	CAGACCAGACGTGATGACCAGCTGAATTTAAGCATATTAGTCAGCAGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCAAGTGAACAGGTAAGAGCCCAGCACCAAAT|CCCCGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGTGGGGCCCAAGTCCTTCTGATCGAGGCCCG	1	0.729750207557027	0.311204357582937	0.306030290211129	N	N	3.3184850412945	2.90828206420058	2.90828206420058	splitr	3	0	0	0.405405405405405	N	0.854166666666667	N	N	0	0	ENSG00000184319	ENSG00000141161	+	+	22	17	51239737	33516364	upstream	intron	AC002055.4	UNC45B	51195376	33474836	+	+	0	21265510	33478369	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.02702702702703	1	3	1	N	N	1	0.932692307692308	111	0.571170592512938	0.860894806106457	0.860894806106457	0.571170592512938	3	-	0	0.60524179975777
135937	GCTCAGGCCCATCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTC|CTCCACCCTCCACCTTCCATTTTCCCCCACTACTGCAGCACCTCCAGGCCTGTTGCTATAGAGCCTACCTGTATGT	1	0.902050846370748	0.800133926999915	0.844771979185218	N	N	3.5246463161926	2.96059718525252	2.96059718525252	splitr	5	0.0657894736842107	0.0657894736842107	0	N	0.197368421052632	N	N	83603	21606	ENSG00000130600	ENSG00000067225	-	+	11	15	2022700	72524163	intron	utr3p	H19	PKM2	2016406	72491370	-	-	0.0657894736842107	2018977	72491468	+	+	Y	-	1.33278892454114	N	SKBR3_13_2_1	2	0	1.75	1	3	1	N	N	0	0	4	1.11750768100357	0.596004096535239	1.11750768100357	0.596004096535239	2	-	485.75	0.60524179975777
76251	GACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAA|CGACCCCACCACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGACATGAACTCATCATTTCCGGGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCG	2	1.48897503135047e-06	0.258666488296237	0.373143407944048	N	N	3.54872248456702	3.2948728812365	3.2948728812365	splitr	183	0	0	0.5	N	0	N	N	3	0	ENSG00000230021	ENSG00000162669	+	+	1	1	659930	91870426	intron	intron	RP5-857K21.4	HFM1	536816	91726323	-	-	0	568408	91853330	+	+	N	0.828962371721779	1	Y	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	0	0	0.60524179975777
116152	GATGCTCCACAGGATTCATGGCCACACCCCGTACTCGTGGCCAGCAGTTCCTCTTTGCCTTATATTTGTGGTACGCCCGGCCAGCCTTCAAGATGGGTTTGTCAATTCGGCCACCTCCA|AATATCTCATCAACAACCGACTAATTACCACCCAACAATGACTAATCCAACTAACCTCAAAACAAATGATAGCCATACACAACACTAAGGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCTATACTAGTTAT	2	4.02733056724398e-08	0.686645868634774	0.871265487878886	N	N	3.61104682422314	3.24209375186814	3.24209375186814	splitr	9	0.0756302521008402	0.0252100840336135	0	N	0.0924369747899161	N	N	18822	3	ENSG00000161016	ENSG00000230021	-	-	8	1	146017972	659930	coding	intron	RPL8	RP5-857K21.4	146015150	536816	-	-	0.0756302521008402	146015845	569179	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	4	0	4	4	3	1	N	N	0	0	3	0.612559765883441	0.463558741749631	0.612559765883441	0.463558741749631	1	-	0	0.60524179975777
127021	AGATACTTTCATGACTGATTTCAGGCTTTTTGTTTTTTTGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGG|TCGGTGTGTCCGGAATTGGTGGGTTCTTGGTCTCACTGACTTAAAGAATGAAGCCGCGGACCCGCGCGGTGAGTGTTACAGCTCTTAAGGTGGCACGTCTGGAGTTTGTTCCTTCTGATGTTCAGATGTGTTCGGAGTTTCTTCCTTCTGGTGGGTTCGTGGTCTCGCTG	5	1	0.153083803202663	0.340956836740815	N	Y	3.26141933644366	3.36145329115156	3.26141933644366	splitr	76	0.617283950617284	0.382716049382716	0.666666666666667	N	0.555555555555556	N	N	74	269	ENSG00000075643	ENSG00000188419	+	+	18	X	33852120	85302566	utr3p	utr3p	MOCOS	CHM	33767482	85116185	+	-	0.555555555555556	33850837	85226257	+	-	Y	-	-	N	SKBR3_13_2_1	564	1	275.333333333333	100	3	1	N	N	0.98	1	3	0.413891733705027	0.60428193120934	0.60428193120934	0.413891733705027	1	-	-	0.60524179975777
94591	GGTTCAACTATGGAAATTTTGTTATGACTTTTACTTCCTCTAGATAGTCAAGTTCGAC|CTGTCTTCTCAGCGTTCCGCCAGGGCAGTGGGCTGACCCAGC	28	0.00916673266348424	0.837888525312797	0.698138253587352	N	Y	3.5465630590714	3.41679307359967	3.41679307359967	splitr	100	0.642857142857143	0	1	N	0.428571428571429	N	N	0	1	ENSG00000225840	ENSG00000163046	-	-	Y	2	10036711	133015542	intron	intron	RN18S1	ANKRD30BL	10036113	132905164	-	-	0.880952380952381	10036639	133011993	-	-	Y	1	0.81549815498155	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	1	1	2	0.430447403053228	0.471836576423731	0.471836576423731	0.430447403053228	0	0	0	0.60524179975777
130387	TGGCAAGAATGCCAAGAAGGAAGACAGTGATGAAGAGGAGGATGATGACAGTGAGGAGGATGAGGAGGATGACGAGGACGAGGATGAGGATGAAGATGAAATTGAACCAGCAGCGATGAAAGCAGCAGCTGCTGCCCCTGCCTCAGAGGATGAGGACGATGAGGATGACGAAGATGATGAGGATGACGATGACGATGAG|GATGATGAAGATGATGGTGATGATTTTGATGATGAGGAAACTGAAGAAAAAGCGCCAGTGAAGAAATCTATATGAGATACTCCAGCCAAAAATGCACAAAATTCAAATCAGAATG	6	0.499902573113691	0.148408542496194	0.360655789117705	N	N	2.65010091632657	2.48658485333108	2.48658485333108	splitr	50	0.0521739130434782	0.28695652173913	0	N	0.356521739130435	N	N	7868	0	ENSG00000115053	ENSG00000227969	+	+	2	13	232348352	68406959	coding	intron	NCL	RP11-248N6.3	232318242	68406008	-	-	0.0521739130434782	232326258	68406374	-	+	Y	-	1	N	SKBR3_13_2_1	14	0.496551724137931	12	10	2	1	N	N	0.496551724137931	0.03125	2	0.827783467410055	0.529781419142435	0.827783467410055	0.529781419142435	3	-	0	0.60524179975777
32023	AGGCTTGTAGGAGGGTAAAATAGAGACCCAGTAAAATTGTAATAAGCAGTGCTTGAATTATTTGGTTTCGGTTGTTTTCTATTAGACTATGGTGAGCTCAGGTGATTGATACCCCTGATGCGAGTAATACGGATGTGTTTAGGAGTGGGACTTCTAGGGGATTTAGCGGGG|TGATTTCTGCCCAGTGCTCTGAATGTCAAATTGAAGAAATTCAATGAAGCACAGGTAAATGGTGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGC	1	0.000520842217128458	1	0.935920242646516	N	N	3.20959872893168	3.22998788850064	3.20959872893168	splitr	5	0.00584795321637432	0	0	N	0	N	N	3	0	ENSG00000230021	ENSG00000137571	-	+	1	8	659930	70747299	intron	intron	RP5-857K21.4	SLCO5A1	536816	70584568	-	-	0.00584795321637432	570120	70602588	-	+	Y	0.828962371721779	1	N	SKBR3_13_2_1	12	1	11	10	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	0	0	0.60524179975777
140122	CTGAGGAAGAGAAGAATTTCAAAGCCTTCGCTAGTCTCCGTATGGCCCGTGCCAACGCCCGGCTCTTCGGCATACGGGCAAAAAGAGCCAAGGAAGCCGCAGAACAGGATGTTGAAAAGAAAAAATAAAGCCCTCCTGGGGACTTGGAATC|AAAAAAAAAAAACCCTCCTTGTTTTAATATCCAATAAGTGGGG	5	0.47068207365387	0.177954356965562	0.402874838687458	N	N	3.14108016055284	2.91241015338352	2.91241015338352	splitr	12	0.0232558139534884	0.279069767441861	0	N	0.395348837209302	N	N	9076	0	ENSG00000167526	ENSG00000213147	+	-	16	10	89630950	135516024	utr3p	upstream	RPL13	XXyac-YRM2136_A.1	89627056	135515571	+	+	0.255813953488372	89629473	100118669	+	-	Y	-	-	N	SKBR3_13_2_1	204	0.745098039215686	154	104	2	1	N	N	0	0.745098039215686	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	2	-	-	0.60524179975777
139971	ATGTGGCGATCGATCTTCTTAGATTCACGGTATCTTCTGAGCAGCCGGCGCAAAATCCTCATTCTCCTCATCCATGTGACCTTCTCTGGCATTCGGGCATTGGCTGTACCCTTCCGCTTACCTATGCCCATGTGCCTGCCCTTCCGGCGGGCCAAGGTGTTTTTCCGGCATCGAGCCCGGGAATGGACCGTCACAGGCTTGCGGATGATCAGCCCATCTTTGATGAGCTTCCGGATCTGCTGACGGGAGTTGGCATTGGCGATTTCATTGGTCTCATTGGGGTCTAACC|CCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCC	1	6.70182198122721e-09	0.12875022366714	0.0640797573534845	N	N	3.52783881145811	3.78937037402784	3.52783881145811	splitr	4	0	0	0	N	0.0251256281407034	N	N	129759	0	ENSG00000108298	ENSG00000162669	-	-	17	1	37360980	91870426	coding	intron	RPL19	HFM1	37356536	91726323	+	-	0	37357528	91852783	-	-	Y	-	1	N	SKBR3_13_2_1	4	1	3	2	2	1	N	N	0	1	2	0.711893781972647	0.554614923164737	0.711893781972647	0.554614923164737	1	-	0	0.60524179975777
133814	CGATGGGATCCACGTCGTGTGCAATCACCACCAGCTGAGCTTTCTTGTTCTCCACCAAGGTGGTGACGGTGTTAACTCCTGCTCGAAGGACAGGTGGTCTCTTCGTTGGGACGTCCCCTTTGCCAGCAGCCTTCTTCTCGGCCCGGGCCAACAGTCTCTGCTTCTTCTCTTGCTTTGTCTCTGGTCTG|TGTCCTCCGTTCATTCCATGGCTGGGAGTCACTGATGCTGCCTCTGCCTTCTGATGCTGGACT	1	0.565806882359953	1	0.935920242646516	N	N	2.95542244593055	3.55657227767559	2.95542244593055	splitr	14	0.0158730158730159	0.0158730158730159	0	N	0.0158730158730159	N	N	16054	10309	ENSG00000148303	ENSG00000158710	-	+	9	1	136218281	159895522	coding	utr3p	RPL7A	TAGLN2	136215069	159887897	+	-	0.0158730158730159	136216798	159888252	-	+	Y	-	1.76407345549424	N	SKBR3_13_2_1	32	0	14.6666666666667	2	3	1	N	N	0	0	3	1.19200819307048	0.521503584468335	1.19200819307048	0.521503584468335	1	-	479.333333333333	0.60524179975777
129608	GAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTAATGAGGAAAATGGGGAGCAGGAAGCTGACAGTGAAGTAGATGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCACCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACT|AAAAAAAAAAAAGGCCAGGCATGGTGGCATGTGCTTTTGT	7	0.477688787812265	0.100588928612517	0.246767964388129	N	Y	3.23999710710482	2.96895083947086	2.96895083947086	splitr	16	0.25	0.25	0	N	0.4	N	N	0	1171	ENSG00000214182	ENSG00000100811	+	-	13	14	82264535	100749129	downstream	intron	PTMAP5	YY1	82264203	100705322	+	+	0.25	82264560	100717183	+	-	Y	-	1.14409640967646	N	SKBR3_13_2_1	154	1	89	24	2	1	N	N	0.537037037037037	1	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	2	-	24.5	0.60524179975777
83923	GGAGGGAGAAAGAGAGCAAAGAGAGAGAGGAGCAATTGGGGGCCAGCTGGAGAGCTCAGATGGAGCAGGTCAGGAGGTGGAACAATGGCAGAGTGAGGGTGGAGGG|GCTAGCTCGAGGCAGGGCTGGTGGGGCCTGAGGCCAGTGAGGAGTGTGGAGTAGGCGCCCAGGCATCGTGCAGACAGGGCGACATCAGCTGGGGACGATGGGCCTGAGCTAGGGCTGGAAAGAAGGGGGAGCCAGGCATTCATCCCGGTCACTTTTGGTTACAGGACGTGGCAGCTGGTTGGACGAGG	2	1	0.467754455729131	0.313727891882291	N	N	3.01394537607435	3.23527702852946	3.01394537607435	splitr	21	0.19811320754717	0.19811320754717	0	N	0.19811320754717	N	N	2107	83603	ENSG00000159335	ENSG00000130600	-	-	12	11	6880118	2022700	utr3p	intron	PTMS	H19	6874682	2016406	+	-	0.19811320754717	6879779	2018908	-	+	Y	-	-	N	SKBR3_13_2_1	2	0	1.5	1	1	1	N	N	0	0	2	0.629115435231642	0.827783467410055	0.827783467410055	0.629115435231642	1	-	-	0.60524179975777
133988	TCACCTGGGCTGCAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTAGGATTATAGGCGCCCGCCACCATGCCAGGCTAATTTTTGTATTTTT|TTTTTGAGACAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCACAGGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACCACAGGCACACACCAC	1	1	0.375556752806067	0.399915574091196	N	Y	3.32895826821511	3.27039548527796	3.27039548527796	splitr	284	0.879432624113475	0.773049645390071	0.5	N	0.666666666666667	N	N	13	289	ENSG00000170160	ENSG00000118242	-	+	17	2	16707767	216898819	utr3p	intron	CCDC144A	MREG	16592851	216807557	+	-	0.652482269503546	16670447	216814288	-	+	Y	-	1.85691546811488	N	SKBR3_13_2_1	560	1	556	552	2	1	N	N	1	0.955974842767296	2	0.653948939253943	0.827783467410055	0.827783467410055	0.653948939253943	1	-	21.5	0.60524179975777
138846	CTGCTCAGCCATGTTTTTGGGGAGGGGCTTCCCATGCCAAGACTCCTTATCTT|CTCCCTCCCGTCCGCCCGTCCGCGGCCCGTCCGTCCGTCCGTCCGTCGTCCTCCTCGCTTGCGGGGCGCCGGGCCCGTCCTCGCGAGGCCCCCCGGCCGGCCGTCCGGCCGCGTCGGGGCCTCGCCGCGCTCTACCTACCTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATT	1	0.0434718828110103	0.321839855309698	0.321669634186996	N	N	3.34831435801417	2.4216343645178	2.4216343645178	splitr	2	0	0	0	N	0	N	N	10141	0	ENSG00000163931	ENSG00000212932	-	-	3	21	53290068	48111157	coding	upstream	TKT	RPL23AP4	53258723	48110676	-	+	0	53265560	9826865	+	-	Y	-	-	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0	1	2	0.488392245771932	0.827783467410055	0.827783467410055	0.488392245771932	2	-	-	0.60524179975777
135229	AGGCCTAGGATTGTGGGGGCAATGAATGAAGTGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTTTGTTATAGTTTTTTATTTTTATGGGCTTTGGTGAGGGAGGTAGGTGGTAATTTGTATTTAATATTTTTAGTTGGGTGATGA|GGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGAT	2	0.761786812221861	0.686645868634774	0.435742853891277	N	N	2.84360475812741	3.16935896602371	2.84360475812741	splitr	2	0.0150375939849624	0	1	N	0.0526315789473685	Y	N	3	0	ENSG00000230021	ENSG00000162669	-	+	1	1	659930	91870426	intron	intron	RP5-857K21.4	HFM1	536816	91726323	-	-	0.0150375939849624	568979	91853144	-	+	N	0.828962371721779	1	N	SKBR3_13_2_1	8	1	5	2	2	2	N	N	0	1	2	0.554614923164737	0.45528090707553	0.554614923164737	0.45528090707553	2	0	0	0.60524179975777
10953	CATGAGCTGCAGCGCGTCCCCGCTCACTTTGGTCTTGTCATCCTTGAAGTGCAGGTGCAGCAGCCTGCTCACCAGCTCCTTCCGGAAGCCGGATCCAGCTCCTGCTCCCTCCATGACCGCAGCCTCAACGCGCGC|CCCAGCCGGAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCTCATCCTACCAGGCTTCGGAATAATCTCCCATATTGTAA	1	1	0.612610548302747	0.693969709788871	N	N	3.28139792085868	3.44975210485255	3.28139792085868	splitr	3	0.0176991150442477	0.0176991150442477	0	N	0.0176991150442477	N	N	1864	0	ENSG00000169689	ENSG00000237973	-	-	17	1	79980794	567996	utr5p	intron	STRA13	RP5-857K21.6	79976579	566454	-	+	0	79980758	567116	+	-	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	3	1	N	N	0	0	3	0.496670080446033	0.620837600557541	0.620837600557541	0.496670080446033	1	-	0	0.60524179975777
16301	GCATGCAACACCTCATTTGGATGTGTCTGGAGTCTTGGAAGTTTGACTACCCTACATTCTCCTACAAATGGACCTTGAGAGCTTGTTT|TTTGGAGGTTCTAGCAGTGGAGCGCAGCTACTCGTATACCCTTGACCGAAGACTGGTCCTCCTCTGTCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCG	2	0.412878376148795	0.419771231117896	0.626856592055952	N	Y	3.54872248456702	3.71720464963688	3.54872248456702	splitr	152	0.284090909090909	0.204545454545454	0	N	0.886363636363636	N	N	0	0	ENSG00000223255	ENSG00000200312	-	+	17	14	34216808	90179167	intron	intron	7SK.208	7SK.26	34216562	90178855	+	+	0.875	34216703	90179082	-	+	Y	1	1	N	SKBR3_13_2_1	5	1	5	5	2	1	N	N	1	0.967213114754098	2	0.430447403053228	0.827783467410055	0.827783467410055	0.430447403053228	2	0	0	0.60524179975777
57927	TTGTGTCTTCCTCTCCTGTGGCATAAAAGTAGTTCTGTCGTTAACTTGTACAACATTGCCATCTGCTGTTGAGAATTGGTAGGTACTGCTTCTGAGAACCTGGCTGCAGATCCTTAGCATAGGCAGCAAATGTTGAGAAAGTCTATCTGTAGTATTACATATACTAAGTTACAGAGGATGCATCCAAGTAGAGAAAATAATATGTGGGTTAAGATACATCCTTAAACTTT|TTTTTTTTTTTGGGGGGGGGGGGGGACGGGGTCTCACTCTGTCACCCAGGC	1	0.574184221048406	0.800133926999915	0.844771979185218	N	Y	3.35000977519337	2.33479793378298	2.33479793378298	splitr	281	0	0.568627450980392	0.333333333333333	N	0.588235294117647	N	N	3251	1571	ENSG00000170348	ENSG00000119139	+	+	14	9	75643349	71870124	utr3p	intron	TMED10	TJP2	75598173	71736224	-	+	0	75599109	71825226	-	+	Y	-	0.0988570452507268	N	SKBR3_13_2_1	38	0.555555555555556	27.3333333333333	15	3	1	N	N	0	0.555555555555556	3	0.852616971432356	0.44700307240143	0.852616971432356	0.44700307240143	2	-	8	0.60524179975777
108902	AGGTCCTCCTCCATACCCATTATAGCCATCCCCAAATCCACGTCCACTGCCATATCCATCAGATCCTCCTCTAAAGTTACTTCCTGGTCCTGGTCCGAAATTTCCACCGCCACCACGTGAATC|TCCCCTCCTCACAGTTGCCATGTAGACCCCTTGAAGAGGGGAGGGGCCTAGG	1	0.326451063723377	0.467532148991838	0.526369772984128	N	N	3.54552998930151	3.51257095804863	3.51257095804863	splitr	14	0	0	0	N	0.0769230769230771	N	N	13407	62936	ENSG00000122566	ENSG00000111640	-	-	7	12	26241149	6647537	coding	utr3p	HNRNPA2B1	GAPDH	26229547	6643093	-	+	0	26236084	6647437	+	-	Y	-	0.330853551193924	N	SKBR3_13_2_1	2	0	1.5	1	1	1	N	N	0	0	2	0.430447403053228	0.45528090707553	0.45528090707553	0.430447403053228	2	-	6167	0.60524179975777
53367	CGCTCCTGTTTGGCTTTCTGCTCCCGGGACCTTCTGTCTCCAATCACAGACATGGCCGTCTCCAGATTGGAACTCTGGATCTCCTTCTCCTCTGCATAGTCGGTGACCCGCTCCAAGTCCGCCGCACC|CTGCACACCCGCCCCTCTCCTGTGCCAGGAACTTGCTACTACCAGCACCATGCCCTACCAATATCCAGCAC	1	0.365212191967802	0.552238018696473	0.629579620139678	N	N	3.61720120015252	3.42420178633076	3.42420178633076	splitr	10	0	0	0	N	0	N	N	875	37145	ENSG00000242028	ENSG00000149925	-	-	15	16	44095241	30081741	coding	utr5p	C15orf63	ALDOA	44088340	30064444	+	+	0	44092911	30077221	-	-	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.488392245771932	0.827783467410055	0.488392245771932	1	-	-	0.60524179975777
65657	ATCTTCTTGTGATTGTGGGTGGTGGCTGGAGGAGTGGAGTGGTGGGAGGCGGCTCAGTCGCGGGCACTCCTGCGACTGGCGGATGCGGTCCGGATGGAATAAGCCTTCAGGAGCCCAGGACCCGCACTGCTGGAGAAGCTCAGGGCATTGCTGCCCATGGTTCCCCCGAGGGTCAGCCCAATGC|CACCACTCCACTTCCTTGTTCCTTCACACCTGCTACTTTGGATTCAGACGAGAAGTTCCAAGAATCCCTGAGTCCACAGCATGACTCTGGTTTGCAGAACCTCTGTCCAGACCAGCCAGATCAGAATACAAAGGAAAGTGACACATCCTGGATCTCAACCCACTTCGATGGGAAGTCTTCCTGATAAATTTAGAGATAACCTAAAGCCCTTGGGGACTTCCTCTTGATTTGAATCTGCTGAACACCTGCCGCACCCCCACCGCACCCCCCCCCCCCGCCCCCCGCCACCGCAGATGAAAACATCAACTCTGCA	2	1.4424495333039e-08	0.14642513198438	0.165868294288181	N	N	3.31638839653118	3.02821066493747	3.02821066493747	splitr	4	0	0	0	N	0	N	N	34840	0	ENSG00000135480	ENSG00000235142	-	-	12	6	52662180	107235354	coding	downstream	KRT7	RP1-60O19.1	52626954	107165327	+	-	0	52642414	107164122	-	-	Y	2.69534778141014	-	N	SKBR3_13_2_1	4	0.44	2.5	1	1	1	N	N	0	0.44	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	1	1556	-	0.60524179975777
74936	CAAAAATCTGACTCCATCAATGGTGGCCTGGTAGGGGTTGGTGACCAGCTGGAGCGTGGAGTAGGCAGTGGCCAGCGGGAACATGCAGGGGTGGAGGGGCT|AGCTCGAGGCAGGGCTGGTGGGGCCTGAGGCCAGTGAGGAGTGTGGAGTAGGCGCCCAGGCATCGTGCAGACAGGGCGACATCAGCTGGGGACGATGGGCCTGAGCTAGGGCTGGAAAGAAGGGG	3	1	0.0814073430937771	0.0945788922457189	N	N	3.23846952379497	3.12907935032238	3.12907935032238	splitr	18	0.128712871287129	0.128712871287129	0	N	0.138613861386139	N	N	5522	83603	ENSG00000106628	ENSG00000130600	-	-	7	11	44163957	2022700	coding	intron	POLD2	H19	44154286	2016406	-	-	0.128712871287129	44155807	2018905	+	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.778116459365451	0.827783467410055	0.778116459365451	2	-	-	0.60524179975777
117060	GTGGCAGCTGGGGACCCCTCTGTCCTGTGTCCCCTGCCATGTCCCTGTCTGACCCAGGCCTGGGGTACCACCCCACGTGCTGGACCCTACGCTGGCCACCCCTGTGCT|CCCTGCCCTGCCCTCCACAGAATTGGGTTCCAAGGGCTGTTCCAGACAACTGCCAACGTCACTGAGGGCCCTGCCCCAGCGGCCC	1	0.39458688162905	0.311204357582937	0.306030290211129	N	N	3.10720246023693	3.34831435801417	3.10720246023693	splitr	15	0.164705882352941	0.164705882352941	0	N	0.164705882352941	N	N	83603	934	ENSG00000130600	ENSG00000114353	+	-	11	3	2022700	50296787	intron	utr3p	H19	GNAI2	2016406	50263724	-	+	0.164705882352941	2018405	50296502	+	-	Y	0.800602019648769	0.59160789073658	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.44700307240143	0.827783467410055	0.827783467410055	0.44700307240143	3	3080.5	28.5	0.60524179975777
137191	GTCCTGTCTCCGTCCCTGAAGCGGTGCGGCGCTCAGGTGAGCGAGGTGTCGTCGTCGCTGCCCTCGCCGCCCGCGCCGCCCATCCGCTCCTCTCTGCTCTCGGCCACCGCGCTCTCGTCGATGTTCTCCAGTGAGTCCGCATGCTGCACCGACAGCTCCGACAGCGCCAGGCTCGGCAACGGGCTCTGCTCCGGGTGCAGCCACGGC|AGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAAC	3	0.445405371378608	0.102639764151325	0.137506481159901	N	N	3.27035563248461	3.42680229220385	3.27035563248461	splitr	3	1.11022302462516e-16	1.11022302462516e-16	0	N	0.0222222222222223	N	N	5988	0	ENSG00000214530	ENSG00000252318	-	+	11	2	72505213	133038738	coding	intron	STARD10	AC097532.1	72465774	133038647	-	-	1.11022302462516e-16	72466116	133038722	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	0	1	2	0.827783467410055	0.662226773928044	0.827783467410055	0.662226773928044	3	-	0	0.60524179975777
114541	TTTCAGACCTTTGGGCTCACACCATTGATACCTCTGATCCTGATGACAAACGCCAATTTGGGTTCTGCAGGTACATAGAAGTTGCCAGCTTTTCTTGCCATCCTCGCCATTTGAATTTCAGTTCTGTACATCTGCCTATATTCCTTGTGATAGTGCTTCGCTTTTTCATAGATAAGCTTCTTCCTTGCCTTTCAAAGCATCTTTTGGACAAACTTCTTTCTCAGGTGCTTGATCTTCAGCTCTGCGAAATTCCTTCGCTTTTTCTTAAGCATTTCTGGCACAGC|AGGAAGCTTATCTATGAAAAAGCGAAGCACTTTCACGAGGAATATAGGCAGATGTACAGATCTGAAATTCGAATGGCGAGGATGGCAAGAAAAGCTGGCAACTTCTATGTATCTTCAGAACCC	19	5.25947655556038e-05	0.608906561325776	0.881697903093133	N	N	3.40319013214585	3.51679652308403	3.40319013214585	splitr	8	0.0406504065040652	0	0	N	0	N	N	423	0	ENSG00000112186	ENSG00000234253	+	-	6	2	17558023	50106501	intron	intron	CAP2	AC078994.2	17393447	50105761	+	+	0.0406504065040652	17531834	50105908	+	-	Y	0.792944321759638	1	N	SKBR3_13_2_1	10	0	7.5	5	2	1	N	N	0	0	2	0.587726261861139	0.529781419142435	0.587726261861139	0.529781419142435	1	15	0	0.60524179975777
128056	AGATGTTGGAGGCCGAAGGAATGAGGGTCGTGACCAACTCAGTATACCACTGGAGGCTCTGTGAGCAAACAGCAAACTGTTCTCATGAAAGCAGGATGTTGGCGAACTGACAAACTCTGTCTGCCGCCAGAAGGAATGCTGGGGGCAGTCATGTCCCAGGTCCCGTGCTCCTTGAGGTTATCCACAGGAACATCCAGA|ACCTCCAAGTCCCGCCTTTCGCGCATCGCCTGCTGCTCTCCCACTCAGCGCCACCTCAGTCCCACAAAGGCCGGGCTGGGATCCTGTGGCCTCCG	2	0.8790376183186	0.808744637905766	0.313727891882291	Y	Y	3.79040344379773	3.2159209387304	3.2159209387304	splitr	293	1	0.0421052631578949	0	Y	1	N	N	513	107	ENSG00000142396	ENSG00000182318	+	-	19	19	58827023	58853712	intron	upstream	AC020915.4	ZSCAN22	58816715	58838385	+	+	0	58826400	58838187	+	-	N	2.42164899597401	-	N	SKBR3_13_2_1	14	0.979166666666667	3.4	1	5	2	N	Y	0.979166666666667	0	10	1.19200819307048	0.811227798061854	1.19200819307048	0.811227798061854	2	7.9	-	0.60524179975777
129492	CCCTTCTTTCCAGCCCTAGCTCAGGCCCATCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTGGTTGCCCCTCGGTT|CCCCACTTCCATTTTGGCCAAACCAACCGCACCTCTGAATTTCTTCGCAAATTTCCTGCCGGCAAGGTCCCAGCATTTGAGGGTGATGATGGAT	3	0.0492899439736274	0.764458900737925	0.550357022332676	N	N	3.21911343399591	3.30124852419771	3.21911343399591	splitr	10	0.106382978723404	0.106382978723404	0	N	0.106382978723404	N	N	83603	492	ENSG00000130600	ENSG00000256322	-	+	11	7	2022700	132720699	intron	coding	H19	AC008038.2	2016406	132719842	-	-	0.106382978723404	2019014	132720575	+	+	Y	-	0.474949123917636	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.637393269905742	0.422169568379128	0.637393269905742	0.422169568379128	1	-	161	0.60524179975777
48023	GGCATGGGCAAGGGGGGTCCCCAGGTAGTAAACTCCCCAGGTGGGCTGAGGGCTAGGGCTGAGCCTCAGGTGGGTCTCCTGTTCCCAGTGCTACCCTGCATAGCGGCCTCCTTCCCAGGCTCTGGGGCAGCGCAGGAGGGGT|AGCACAGGGAAGAGGAGACCCACCTGAGGCTCAGCCCTAGCCCCTCAGCCCACCCACGGGAGAGTTTACTGACTGGGGACCGCACTTGCCCATGCCTCCAGCTACAAAACAATTCAATTGCTTTTTTTTTTGGTCCAAAATAAAACCTCAGCTAGCTTTAACACACACACACACACACAA	6	0.42459257719368	0.573180702964477	0.87110379393509	N	N	3.14996302343129	3.15103594599453	3.14996302343129	splitr	2	0	0	1	N	0	N	N	64916	0	ENSG00000170421	ENSG00000183230	+	+	12	10	53298868	69455927	utr3p	intron	KRT8	CTNNA3	53290971	67679719	-	-	0	53291185	69423271	+	+	Y	0.79462094030254	1	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.480114411097832	0.827783467410055	0.480114411097832	1	3739.5	0	0.60524179975777
124886	TCTACCTACCTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGG|TGACGCGATGTGATTTCTGCCCAGTGCTCTGAATGTCAAATTGAAGAAATTCAATGAAGCACAGGTAAATGGTGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGG	1	3.27150910241127e-09	0.209527252024466	0.160545729398276	N	N	2.9406186008375	3.40637327984155	2.9406186008375	splitr	7	0	0	0	N	0	N	N	0	0	ENSG00000212932	ENSG00000137571	+	+	21	8	48111157	70747299	upstream	intron	RPL23AP4	SLCO5A1	48110676	70584568	+	-	0	9827274	70602598	+	+	Y	-	1	N	SKBR3_13_2_1	5	1	5	5	2	1	N	N	1	1	2	0.44700307240143	0.827783467410055	0.827783467410055	0.44700307240143	1	-	0	0.60524179975777
27798	CCCCCCCGCGAAGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGCTACTGGCAGGATCAACCAGGTAGGTAGGTAGAGCGCGGCGAGGCCCCGACGCGGCCGGACGGCCGGCCGGGGGGCCTCGCGAGGACGGGCCCGGCGCCCCGCAAGCGAGGAGGACGACGGACGGACG|CAAACATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAAAGCCAAAATTCA	1	3.79537215970124e-05	0.526775457519482	0.600084425908804	N	N	2.85694657975604	3.38127338926705	2.85694657975604	splitr	6	0	0	0	N	0	N	N	0	5684	ENSG00000212932	ENSG00000221983	-	-	21	19	48111157	18688269	upstream	utr5p	RPL23AP4	UBA52	48110676	18682614	+	+	0	9826900	18684106	-	-	Y	-	0.584234753635624	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	1	0	2	0.422169568379128	0.637393269905742	0.637393269905742	0.422169568379128	2	-	514	0.60524179975777
29782	GATCTGATAAATGCACGCATCCCCCCCGCGAAGGGGGTCAGC|GCCAGGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTC	1	0.511342888811655	0.899266171301115	0.897571427984624	N	N	3.40112399260607	3.37192651807217	3.37192651807217	splitr	3	0	0	0.75	N	0.166666666666667	N	N	0	0	ENSG00000212932	ENSG00000162669	-	+	21	1	48111157	91870426	upstream	intron	RPL23AP4	HFM1	48110676	91726323	+	-	0	9827191	91853136	-	+	Y	-	1	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	1	4	0.769838624691351	0.852616971432356	0.852616971432356	0.769838624691351	2	-	0	0.60524179975777
126648	GGTTCTCGGTCTCCAGGCTCCTCACTCTGTCCAGGTAAGAGGCCAGGCGGTCGTTCAGGCTTTGCATGGTCTCCTTCTCGTTCTGGATG|CCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCC	3	1	0.716823677278582	0.686215388897037	N	N	3.40587876630159	3.53871326596283	3.40587876630159	splitr	8	0	0	0	N	0	N	N	31732	3	ENSG00000111057	ENSG00000230021	-	-	12	1	53346684	659930	coding	intron	KRT18	RP5-857K21.4	53342655	536816	+	-	0	53343185	568367	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	52	0	28	4	2	1	N	N	0	0	2	0.480114411097832	0.769838624691351	0.769838624691351	0.480114411097832	2	-	0	0.60524179975777
115313	CTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTC|AACCCCCTGCCATAACCCAATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAGCTGCTGGCATCACTATACTACTAACAGACCGCAACCTCAACACCACCTTCTTCGACCCCGCCGGAGGAGGAGA	2	1	0.14642513198438	0.165868294288181	N	N	3.50529022639353	3.19339528160478	3.19339528160478	splitr	9	1.11022302462516e-16	1.11022302462516e-16	0	N	1.11022302462516e-16	Y	N	93473	121749	ENSG00000198886	ENSG00000198804	+	-	MT	MT	12137	7445	coding	coding	MT-ND4	MT-CO1	10760	5904	+	+	1.11022302462516e-16	11665	6418	+	-	N	0.74774456242977	-	N	SKBR3_13_2_1	6	0	6	6	2	2	N	N	0	0	2	0.827783467410055	0.571170592512938	0.827783467410055	0.571170592512938	3	6284	-	0.60524179975777
139666	TCTTCATAATCTTTGTTCACTCCATCTCTCCGTTCCTTGGCACGATCCCGGTACTTCTCTGCTAGCTCTCTCTCTCTCT|TCACCGTGCCAGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCCTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCTGCCGTTTACCCGCGCTTCATTGAATTTCTTCA	1	0.303733481553424	0.311204357582937	0.306030290211129	N	N	3.16685446145156	3.56761456604966	3.16685446145156	splitr	10	0.0126582278481011	0	0	N	0.0886075949367089	N	N	1560	0	ENSG00000113141	ENSG00000226958	-	+	5	X	140042064	108297792	coding	intron	IK	RN28S1	140026643	108297361	+	-	0.126582278481013	140032594	108297634	-	+	Y	-	1	N	SKBR3_13_2_1	8	1	7	6	2	1	N	N	0	1	2	0.521503584468335	0.546337088490636	0.546337088490636	0.521503584468335	1	-	0	0.60524179975777
83965	CTAAAGCCCATGTCGAAGCCCCCATCGCTGGGTCAATAGTACTTGCCGCAGTACTCTTAAAACTAGGCGGCTATGGTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCCTAC|CCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAGCTGCTGGCATCACTATACTACTAACAGACCGCAACCTCAACACCACCTTCTTCGACCCCGCCGGAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCTTATCCTACCAGGCTTCGGAATAATCTCCC	2	1	0.808744637905766	0.564257146108723	N	N	3.19761149907036	3.55037804895286	3.19761149907036	splitr	3	1.11022302462516e-16	1.11022302462516e-16	0	N	0.0703124999999999	Y	N	93473	121749	ENSG00000198886	ENSG00000198804	+	-	MT	MT	12137	7445	coding	coding	MT-ND4	MT-CO1	10760	5904	+	+	1.11022302462516e-16	11536	6447	+	-	N	-	-	N	SKBR3_13_2_1	4	0	3.6	2	5	2	Y	N	0	0	5	1.27478653981148	1.5396772493827	1.5396772493827	1.27478653981148	1	-	-	0.60524179975777
129885	ACCCATCTTCAACTGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCT|GTGGCCGCTCGCACACCGGGAGGGCTGCTGCTGGCTCTGGCAGAAGGCCCAAATTCCTTGGTGCACAGACACGGCTGCGGATGTGTGGACATGTCCGTGGGGCTACGTGAGGGTCCCCGTGACGTGGCAGCGGGTTTCCACAGTGCAGTCATTGATGGGGTGGTGTGGGGGGGAGCCACGGCACCTCTGTGACCTAGTATCGGAAGCAAGGGGCTGCGTGAGGGTCCTCGTGACACGGCAGTAGGTTTCCCCAGTACAGTGACTGGGGGGGGGGGGGGGGGGCGGGGGCGGAGGAAGCTGCAGCATCTCTTGTATCG	532	8.30279108905066e-05	0.0660476962188473	0.298802250126913	N	N	3.47911741325579	3.19037062020861	3.19037062020861	splitr	1	2.22044604925031e-16	0	0	N	0	N	N	0	1038	ENSG00000251948	ENSG00000167522	+	-	19	16	24184165	89556969	intron	intron	AC092279.1	ANKRD11	24184075	89334035	-	-	2.22044604925031e-16	24184150	89396802	+	-	Y	1	3.22850159195806	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	1	0.48	2	0.488392245771932	0.413891733705027	0.488392245771932	0.413891733705027	3	0	8	0.60524179975777
118155	GGTGGGTTTTGTGTGTTCAAACTGTCATTTTATTTTTACGTTGTTAGATATAGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGCAGGTAGAAGTAGAGGTTAAGGAGGGTGATGATGGCTATGATG|GTGGGGATGGCTATAATGGATTTGGTAATGATGGAAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAACAATCAGTCTTCAAATTTTAGACCCATGAAGGGAGGAAATTTTGGAGGCAGAAGCTCTGGCCCCTATGGCGGT	1	1	0.612610548302747	0.693969709788871	N	N	3.1850280470173	3.18655563032715	3.1850280470173	splitr	24	0.0384615384615383	0	0	N	0.807692307692308	N	N	0	0	ENSG00000225630	ENSG00000229251	-	-	1	7	566063	84613825	intron	intron	RP5-857K21.8	HNRNPA1P8	565020	84612863	+	+	0.0384615384615383	565859	84613590	-	-	Y	1	1	N	SKBR3_13_2_1	76	0.49748743718593	46	12	3	1	N	N	0	0.49748743718593	3	0.885728310128759	1.24167520111508	1.24167520111508	0.885728310128759	2	0	0	0.60524179975777
77012	GATTATTCCGAAGCCTGGTAGGATGAGAATATAAACTTCAGGGTGACCGAAAAATCAGAATAGGTGTTGGTATAGAATGGGGTCTCCTCCTCCGGCTGGGTCGAAGAAGGTGGTGTTGA|GGCCATGATTAAGAGGGACGGCCGGGGGCATTCATATTGCACCGCTAGAGGTGAAATTCTTGGACTGGCAGTTTAGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTTGTAATTC	1	0.0709917887348047	1	0.935920242646516	N	N	3.31336373513502	3.4561676006071	3.31336373513502	splitr	5	0.0252100840336134	0	0	N	0.050420168067227	N	N	0	1	ENSG00000237973	ENSG00000163046	-	+	1	2	567996	133015542	intron	intron	RP5-857K21.6	ANKRD30BL	566454	132905164	+	-	0.0252100840336134	567097	133012872	-	+	Y	1	0.81549815498155	N	SKBR3_13_2_1	6	1	4.33333333333333	4	6	1	N	N	0	1	6	1.38239839057479	0.90228397947696	1.38239839057479	0.90228397947696	1	0	0	0.60524179975777
137516	CCCTTAGCATCCCCTTCAGCCTTTCTCTTGGGCATGGTGGCGGCGGCGACGGC|GGCGTCCTGACCGCGTCCGACGGGCTGCTGGCGGGCAACGAGAAGCTAACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGCGGCCAACGGCGAGCTAGAGGTGAAGATCCGCGACTGGTACCAGAAGCAGGGGCCTGGGCCCTCCCGCGACTACAGCCACTACTACACGACCATCCAGGACCTG	1	1	0.375556752806067	0.399915574091196	N	N	3.39168383545536	3.26613006744921	3.26613006744921	splitr	19	0.264150943396227	0.264150943396227	0	N	0.283018867924528	N	N	4202	58670	ENSG00000198830	ENSG00000171345	-	+	1	17	26802463	39684560	utr5p	coding	HMGN2	KRT19	26798941	39679869	+	-	0.264150943396227	26799086	39684301	-	+	Y	-	0.940811198664414	N	SKBR3_13_2_1	3	0	2	1	1	1	N	N	0	0	2	0.496670080446033	0.695338112624446	0.695338112624446	0.496670080446033	2	-	2549	0.60524179975777
76980	TGTGGGGACAGCTCATGAGTGTAAGACGTCTTGTGATGTAATTATTATACGAATGGGGGCTTCAACCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCAGGTCGCCTGGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTATTCGTAGGTTCAGTACCATTGATGGCCAATTGATTTGATGGTAAAGGAGGGATCGTTG|GTAAATACGGGACCCGCTATGGGGCCTCCCTCTGGAAAATGGTGAAGAAAGTTGAAATCAGCCAGCAGG	1	1	0.899266171301115	0.897571427984624	N	N	3.32167753656001	3.26663392855898	3.26663392855898	splitr	10	2.22044604925031e-16	0	0	N	0	N	N	3	0	ENSG00000230021	ENSG00000226243	-	+	1	20	659930	43095482	intron	intron	RP5-857K21.4	RPL37AP1	536816	43095204	-	-	2.22044604925031e-16	568406	43095448	-	+	Y	0.828962371721779	1	N	SKBR3_13_2_1	12	0	7.33333333333333	4	3	1	N	N	0	0	3	0.927117483499261	0.745005120669049	0.927117483499261	0.745005120669049	1	0	0	0.60524179975777
134909	CTCTGTGTATTTGTCAATTTTCTTCTCCACGTTCTTCTCGGCCTGTTTCCGTAGCCTCATGAGCTGTTTCTTCTTCCGGTAGTGGATCTTGGCTTTCTCT|TTCCTCCTTAGACCAAAGTCTTGATGATCTCCTCCTTCTTGGCCTGGAGGTGCTCTTCACGGTGCTTGCGTGCTTCCTTGGTCTTAGACCTGCGGGTCTCAGCCTGGTCAGCCAGGA	1	0.94293961408239	1	0.935920242646516	N	N	3.29549537585246	3.27097812710056	3.27097812710056	splitr	22	0.1	0.0199999999999999	0	N	0.0900000000000002	N	N	29339	0	ENSG00000142541	ENSG00000236762	-	-	19	10	49995565	122893237	coding	intron	RPL13A	RP11-159H3.1	49990811	122892604	+	-	0.1	49994762	122892619	-	-	Y	-	1	N	SKBR3_13_2_1	36	0	27	18	2	1	N	N	0	0	2	0.645671104579843	0.670504608602144	0.670504608602144	0.645671104579843	2	-	0	0.60524179975777
128413	CCTGGGACTTTTTTTTTTTTTTTTTTTTTTTTTAATCAGACAGGGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATC|CTCGGCTCACTGCAACCTCCGCCTCCCGGCTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGAATTATAGGCACCCGCCACCACACCTGGCTAATTTTGTACTTTTAGTGGAGACGGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACC	1	0.874287491456395	0.163783040919641	0.102428735043176	N	Y	3.41844863798551	3.40016547074969	3.40016547074969	splitr	265	0.847058823529412	0.623529411764706	0.5	N	0.576470588235294	N	N	0	16	ENSG00000180730	ENSG00000175984	+	-	13	1	26625198	115213043	utr3p	utr3p	SHISA2	DENND2C	26618735	115125469	-	-	0.658823529411765	26620169	115126379	-	+	Y	-	-	N	SKBR3_13_2_1	624	1	507.5	391	2	1	N	N	0.919191919191919	1	2	0.819505632735954	0.827783467410055	0.827783467410055	0.819505632735954	2	-	-	0.60524179975777
69087	CACGGCCACCTCCACGACCTCTGGGTTCATAGCCACCACTGCTGCGGTTGTAACCACCACCGCCGCCGCCGCCGCCGCCACCACTGCCACCCCTGCCGCGGCCTCCACGGTCCTGCTGTCCATAGCCACCGCTGCCACCTCCACCACTCTGGTCTTGATTGCCATAACCGCCACCACTGCCACCACCACTACTCATGGAGGATTGATCTTGGCCATAGTTACC|CCCCCCCCCCCCCCCCCCCCCACCACCACCACCCCGCCGGCCGGCCCCAGGCC	1	1	0.612610548302747	0.693969709788871	N	N	3.71401215437137	1.69208364431136	1.69208364431136	splitr	2	1.11022302462516e-16	1.11022302462516e-16	0	N	0.0566037735849055	N	N	4330	0	ENSG00000089280	ENSG00000250537	-	-	16	4	31203127	190990406	intron	upstream	FUS	DUX4L8	31191445	190988796	+	+	1.11022302462516e-16	31196259	190988793	-	-	Y	0.769976226374073	-	N	SKBR3_13_2_1	9	0.843137254901961	7	5	2	1	N	N	0.335106382978723	0.843137254901961	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	1	101.5	-	0.60524179975777
107043	TATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCC|CTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACACCCTAGGCTCACTAAACATTCTACTACTCACTCTCACTGCCCAAGAACTATCAAACTCCTGAGCCAACAACTTAATATGACTAGCTTACACAATAGCTTTTATAGTAAAGATACCTCTTTACGGACTCCACTTATGACTCCCTAAA	6	0.000336915416768943	0.18089202666315	0.443755525096951	N	Y	3.62617734898681	3.0904070235176	3.0904070235176	splitr	421	1	0.0374331550802139	0	Y	0.0855614973262032	N	N	58402	93473	ENSG00000198712	ENSG00000198886	+	-	MT	MT	8269	12137	coding	coding	MT-CO2	MT-ND4	7586	10760	+	+	0.00534759358288772	7863	11227	+	-	N	-	-	N	SKBR3_13_2_1	2	0	2	2	5	2	Y	N	0	0	5	1.06784067295897	1.00989583024027	1.06784067295897	1.00989583024027	2	-	-	0.60524179975777
123051	CAGCGCCTCTAGCTGCTGTCGGGCGCGCTCAGCCGCCGAGTCCTCGCGCTCTCCGTCCGAATC|CTCTGCTTTTTCTCAGTTCCAGCTCCTTTCTCTTTCACGGTACCTCAGTTGCTTCTACTTTATCGGATAGTGTTGG	22	0.078231596971105	0.546717412732995	0.482090960108795	N	Y	3.1117894000631	2.93909101752765	2.93909101752765	splitr	139	1	0	0	N	1	N	N	609	0	ENSG00000183011	ENSG00000219814	+	+	17	6	7761172	171055065	coding	upstream	LSMD1	XX-C2158C6.2	7760005	171054606	-	+	0.0158730158730159	7760516	131122903	+	+	Y	9.55252808782815	-	N	SKBR3_13_2_1	3	0	3	3	2	1	N	N	0	0	2	0.513225749794234	0.637393269905742	0.637393269905742	0.513225749794234	2	51.5	-	0.60524179975777
135233	AGTAGTAAGTTACAATATGGGAGATTATTCCGAAGCCTGGTAGGATGAGAATATAAACTTCAGGGTGACCGAAAAATCAGAATAGGTGTTGGTATAGAATGGGGTCTCCTCCTCCGGCTGGGTCGAAGAAGGTGGTGTTGAGGTTACGGTCTGTTAGTAGTATAGTGATGCCAGCGGCTAGGACTGGGAGAGATAGGAGAAGTAAGACTGCTGTGATTAGGACGGATCAGACGAAAAGGGGCGTTTGGTATTGGGTTATGGCAGGGGGTTTTATATTAATAATTGTTGTGATGAAATTGATGGCTCCTAAGATAGAGGAGATACCTGCTAGGTGTAAGGAGAAGA|TGGGGAGGAAGAGGAGGAGGAAAAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGAGGAAGCTGAGTCTGCTACAGGCAAGCGGGCAGCTGAAGATGATGAGGATGATGATGTCGATACCAAGAAGCAGAAGACCGACAAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAACTAAAAAAAAAAGG	1	2.51853062571958e-13	0.254583648908217	0.223418152789081	N	N	3.29756151539224	2.45500397092462	2.45500397092462	splitr	13	0.0157068062827225	0	0	N	0	N	N	0	0	ENSG00000237973	ENSG00000232063	-	+	1	9	567996	97123230	intron	intron	RP5-857K21.6	RP11-307E17.8	566454	97094758	+	+	0.0157068062827225	566893	97109669	-	+	Y	1	1	N	SKBR3_13_2_1	18	0	15.3333333333333	12	3	1	N	N	0	0	3	1.01817366491437	0.877450475454658	1.01817366491437	0.877450475454658	2	0	0	0.60524179975777
141691	CTTGGTGATGTCTTCAGGCATGAAAGCTACGGCCCCCTCAAGCAGATTAGTGATAGTCAAGTCTACACAGCCAGTCTTGGCCAGGTCTCTCTGGATGACACCCAATGGCACATGGGGCAAAACTTCCTTGACTCTCTGAGCCAGAGTTGCCAGTTGCACATCAGGAGAAGGACCAGGGGAGGGAGGGAAAGAAGAC|CCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGCCATGAGAAGTGTAGAATAAGTGGGAGGCC	3	1	0.210904038915993	0.371853253469863	N	N	2.66588532439807	3.72824693801095	2.66588532439807	splitr	12	2.22044604925031e-16	2.22044604925031e-16	1	N	0.134328358208955	N	N	2418	0	ENSG00000115307	ENSG00000198626	-	-	2	1	74757066	238129359	coding	intron	AUP1	RYR2	74753772	237205505	-	+	2.22044604925031e-16	74754713	237766561	+	-	Y	-	1	N	SKBR3_13_2_1	3	1	2.5	2	2	1	N	N	0	1	2	0.827783467410055	0.529781419142435	0.827783467410055	0.529781419142435	2	-	0	0.60524179975777
112994	GTCCGAGTGGGGGCGGCTGGAGCTTAAACTTGAATGGGGAGGAAGAAGAAGAAGAGGATGACGAGGCCGAGGAGGGGACCGGTGGGGTCTCGGGTGCCATGGGCGGCAGCGGGCACTTGTCAGGGCGCTGGGGCTGGGGCACCACCAGCCCAGGGTAGTGCAGGAAGGCGCGGGGGCTGAGGTGGTAGT|AGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCAGTTGAA	1	0.549135603516424	0.205558172728075	0.155228020814782	N	N	3.14740237035155	3.5368149602924	3.14740237035155	splitr	9	1.11022302462516e-16	1.11022302462516e-16	0	N	1.11022302462516e-16	N	N	947	0	ENSG00000105722	ENSG00000251948	-	+	19	19	42759309	24184165	coding	intron	ERF	AC092279.1	42751717	24184075	-	-	1.11022302462516e-16	42753296	24184128	+	+	N	-	1	Y	SKBR3_13_2_1	2	1	1.66666666666667	1	2	1	N	N	0	1	3	1.24167520111508	0.554614923164737	1.24167520111508	0.554614923164737	1	-	0	0.60524179975777
24834	TGATTGCCACTTATGCTTTCTTGCCAGATGCCTTTGGAGCAGGTGCTTTCTGGGCTGGAGCTTTTTGACCCTTCTGAGCTTTTGGAGCAGGCGCTGCTTTCTGGCCTGTGGCTTTCTGGGCAGGAACCTTCTGGGCTGGAGCCTTTTTACTCGCGGCGGTGATCTTTTTTGCTGGAACTTTAGCAGCAGCAGCAGCAGC|AGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCACAGATAACCCTTCGTTTTAGAGA	19	1	0.78139145887539	0.893030405064272	N	N	3.17932833183454	2.30354122495102	2.30354122495102	splitr	32	0.245614035087719	0.245614035087719	0	N	0.578947368421053	N	N	7767	1070	ENSG00000188846	ENSG00000198824	-	+	3	13	40506549	115092796	coding	upstream	RPL14	ZNF828	40498783	115079988	+	+	0.245614035087719	40503535	107367127	-	+	Y	-	-	N	SKBR3_13_2_1	16	0.903225806451613	15	14	2	1	N	N	0	0.903225806451613	2	0.76156079001725	0.513225749794234	0.76156079001725	0.513225749794234	2	-	-	0.60524179975777
103133	AGGCAGAGGCAGCATCAGTGACTCCCAGCCATGGAATGAACGGAGGACACAGAGCTCAGAGACAGAACAGGCCAGGGGGAAGAAGGAGAGACAGAATAGGCCAGGGCATGGCGGTGAGGG|ACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCATATTGCACCGCTAGAGGTGAAATTCTTGGACTGGCAGTTTAGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATC	4	1	0.922486819675656	0.78268225771684	N	N	3.20591172012622	3.54872248456702	3.20591172012622	splitr	11	0	0	0	N	0	N	N	10309	1	ENSG00000158710	ENSG00000163046	-	+	1	2	159895522	133015542	utr3p	intron	TAGLN2	ANKRD30BL	159887897	132905164	-	-	0	159888323	133012877	+	+	Y	-	0.81549815498155	N	SKBR3_13_2_1	3	1	2.33333333333333	2	3	1	N	N	0	1	3	0.836061302084155	1.02645149958847	1.02645149958847	0.836061302084155	1	-	0	0.60524179975777
19866	GATTACTCGCTCATCAGACCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATGGAAGTCAG|GAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAA	91	0.00393436020340691	0.49055428990043	0.441823318459592	N	Y	3.6769648867289	3.82658547553966	3.6769648867289	splitr	115	0	0	0.166666666666667	N	0.809523809523809	N	N	0	0	ENSG00000252666	ENSG00000243185	+	+	19	4	36066721	70296753	upstream	intron	AD000090.1	AC108078.1	36066627	70296579	+	-	0.952380952380952	36066571	70296733	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.33333333333333	1	2	1	N	N	1	0.686567164179104	6	0.703615947298547	0.554614923164737	0.703615947298547	0.554614923164737	1	-	0	0.60524179975777
114247	AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCACCATTTACCTGTGCTTCATTGAATTTCTTCAATTTGACATTCAGAGCACTGGGCAGAAATCACATCGCG|AAGGCCCGCGGCGGGTGTTGATGCGATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAAACGGCAGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATT	46	6.81190996822318e-05	0.40321210531144	0.451847995600502	N	N	3.3550912285595	3.25256697878875	3.25256697878875	splitr	8	2.22044604925031e-16	0	0.4	N	0.120567375886525	N	N	0	0	ENSG00000137571	ENSG00000226958	+	-	8	X	70747299	108297792	intron	downstream	SLCO5A1	RN28S1	70584568	108297361	-	-	2.22044604925031e-16	70602595	108297354	+	-	Y	1	-	N	SKBR3_13_2_1	6	1	3.8	3	5	1	N	N	1	1	5	0.521503584468335	0.571170592512938	0.571170592512938	0.521503584468335	1	0	-	0.60524179975777
117859	ACATCTTTTATGCATATATAGATATACACACACACATTTTTTTTTTTTTTTT|GAGACTGGGTCTCACTCTGTCGCCTCAACTGGAGTACAGTGGTGTGATCTCAGTTCACTGCAACCTCTGCCTCCCAGGTTCATACAATTCTCCCACCTCAGCCTCC	2	0.135566235436176	0.935695919090345	0.96241881209261	N	N	2.33061641143755	3.50529022639353	2.33061641143755	splitr	44	0.5	0.692307692307692	0	N	0.634615384615385	N	N	0	1344	ENSG00000154764	ENSG00000184992	+	+	3	12	13921618	125515684	utr3p	utr3p	WNT7A	BRI3BP	13857755	125478246	-	+	0.692307692307692	13859850	125514077	-	+	Y	-	-	N	SKBR3_13_2_1	9	1	3.66666666666667	1	1	1	N	N	0	1	3	0.430447403053228	0.612559765883441	0.612559765883441	0.430447403053228	1	-	-	0.60524179975777
47513	GCAGGATAGTTCAGACGGTTTCTATTTCCTGAGCGTCTGAGATGTTAGTATTAGTTAGTTTTGTTGTGAGTGTTAGGAAAAGGGCGTACAGGACTAGGAAGCAGATAAGGAAAATGATTATGAGGG|GAATGACGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACACGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAGACAAGCGGATTCTCATGGAACACATCCACAAGCTGAAGGC	1	0.796268641856422	0.612610548302747	0.693969709788871	N	N	3.24462389972434	3.70719543103269	3.24462389972434	splitr	7	0.0476190476190477	0.0238095238095239	0	N	0.0714285714285714	N	N	3	0	ENSG00000230021	ENSG00000218227	-	-	1	5	659930	177483195	intron	intron	RP5-857K21.4	RP11-889L3.1	536816	177482605	-	+	0.0476190476190477	568216	177482897	-	-	Y	0.828962371721779	1	N	SKBR3_13_2_1	32	0	14	4	4	1	N	N	0	0	4	1.24167520111508	1.31617571318199	1.31617571318199	1.24167520111508	1	0	0	0.60524179975777
95791	CCCTCGAGGCTCCGGCATAGGCCTGAGAAAGCCGTGCCGGAGCTGCCCCTGTGCCTGCTACTAAATGAATTGCGGTGGGTGAGGTGGCAGCTGGGGACCCCTCTGTCCTGTGTCCCCTGCCATGTCCCTGTCTGACCCAGGCCTGGGGTACCACCCCACGTGCTGGACCCTACGCTGGCCACCCCTGTGCTCCCTCCCTGCCCTCTTGCTCTTTCTGCCTGGAACGG|GCCCTAGCCCTCAGCCCACCTGGGGAGTTTACTACCTGGGGACCCCCCTTGCCCATGCCTCCAGCTACAAAACAATTCAATTGCTTTTTTTTGGTCCAAAATAAAACCTCAGCTAGCTCTGCCA	1	0.020346719728173	0.321839855309698	0.321669634186996	N	N	2.90360183841857	3.16473217340419	2.90360183841857	splitr	4	0.032258064516129	0.032258064516129	0	N	0.120967741935484	N	N	83603	1367	ENSG00000130600	ENSG00000198363	+	-	11	8	2022700	62627199	intron	intron	H19	ASPH	2016406	62413115	-	-	0.032258064516129	2018441	62492340	+	-	Y	0.813053567809461	1.15755270340056	N	SKBR3_13_2_1	12	0	7	2	2	1	N	N	0	0	2	0.794672128713653	0.827783467410055	0.827783467410055	0.794672128713653	1	3060	22.5	0.60524179975777
133070	ACGCCCTTGTCTACCTTGATGCCCACAACACCGCCCTTGGATTTGATAACTTGGGGGAAGGGACGCCCATCATCCGCCTTCTGGTAGAGTGTCTCATGGAAGAGGATGACACCCCCAATGCAGGGGTTCACGCGGTCGTCAGCTGTCAGCAGCAGCTGGCGGTAGAAGCGCCGGTTCTCCTCGGTGTTCTCGGTGCCAATGGACTGCAGCCGCTTGGCAATGCTCCCAGTGGACTCATCTGCAGCCAGGATGCCCT|TGCCAGAGAAGGTCACATGGATGAGGAGAATGACGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACACGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAGACAAGCGGATTCTCATGGAACACATCCACAAGCTGAAGGCAGACAAGGCCCGCA	2	1.13385745848433e-06	0.746902376490081	0.0978048625560518	N	N	3.41848849077886	3.42886843174363	3.41848849077886	splitr	23	0	0.0317460317460316	0	N	0.0370370370370372	N	N	37145	0	ENSG00000149925	ENSG00000218227	-	-	16	5	30081741	177483195	coding	intron	ALDOA	RP11-889L3.1	30064444	177482605	+	+	0	30078658	177482870	-	-	Y	-	1	N	SKBR3_13_2_1	7	0	5.5	4	2	1	N	N	0	0	2	0.587726261861139	0.546337088490636	0.587726261861139	0.546337088490636	1	-	0	0.60524179975777
110373	ACTCCTCCTAGACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACCTCCATCATCACCTCAACCCAAAAAGGCATAATTAAACTTTACTTCCTCTCTTTCTTCTTCCCACTCATCCT|AGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAACAGCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTA	1	1	0.447538936456759	0.5	N	N	2.6523128881678	3.41103992525442	2.6523128881678	splitr	15	0.13265306122449	0.13265306122449	0	N	0.13265306122449	Y	N	54817	17065	ENSG00000198786	ENSG00000198888	+	-	MT	MT	14148	4262	coding	coding	MT-ND5	MT-ND1	12337	3307	+	+	0.13265306122449	14126	4091	+	-	N	-	1.03867581989937	N	SKBR3_13_2_1	4	0	3	2	2	1	Y	N	0	0	2	0.827783467410055	0.496670080446033	0.827783467410055	0.496670080446033	1	-	2072	0.60524179975777
118091	AGAGGGCACAGACGGGCGAGGGCCGGGGACCGTGAGGGCAAGGGCACCCGGGAGCCCGCAGAGGCGGCGGCTCGGGGAGAAACCTCAGGCACGGCCGGGCCACCAGGAAAACACGGCCGC|GGGATCCCACCACCACAGACACGAGGGAGGTCCCTCGGCAGCCCGCCTAGGACGCCAGATGGCCCTCGGCACCCACCGAGACCCGCCTCACGAGCCCTGGTTCCCGCCATCGGGACC	2	1	0.467754455729131	0.686272108117709	N	N	3.14761005701425	3.13743300454072	3.13743300454072	splitr	108	0.692307692307692	0	0	N	0.829059829059829	N	N	0	0	ENSG00000212932	ENSG00000251966	-	+	21	Y	48111157	10034093	upstream	intron	RPL23AP4	AC010970.1	48110676	10033979	+	+	0.709401709401709	9825444	10034051	-	+	Y	-	1	N	SKBR3_13_2_1	2	0	1.33333333333333	1	1	1	N	N	0	0	3	0.802949963387753	0.488392245771932	0.802949963387753	0.488392245771932	3	-	0	0.60524179975777
139731	TCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGTGTGCGCCTGTAATCCCAGCTACTGGGGAGGCTGAGGCAGAAGAATCGCTTGAACCCAGGAGGTGAGGTTGCAGTGAGCTGAGATTGCACCACTGGACTACAGCCTGGGTGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAGGGAGGG|GGAGGGAGGCAGGAGAGGGGAGGCCTCAATGAGGTGACGGGAAAAAGATTCAACTACCCACAGCTGGCTCTGAAGATGGAGGAGCCTGAAGTCAAGAATTAC	1	0.814966213807548	0.526775457519482	0.600084425908804	N	Y	2.69261543180807	3.121220209644	2.69261543180807	splitr	295	0.147058823529412	0.0098039215686273	0	N	0	N	N	427	485	ENSG00000141569	ENSG00000185215	+	+	17	14	73893084	103603776	utr3p	utr3p	TRIM65	TNFAIP2	73885041	103592664	-	+	0.068627450980392	73885132	103602852	-	+	Y	-	-	N	SKBR3_13_2_1	504	0.869158878504673	254.5	5	2	1	N	N	0.869158878504673	0.685897435897436	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
138119	TGTGATTAGGACGGATCAGACGAAAAGGGGCGTTTGGTATTGGGTTATGGCAGGGGGTTTTATATTAATAATTGTTGTGATGAAATTGATGGCTCCTAAGATAGAGGAGATACCTGCTAGGTGTAAGGAGAAGATGGTTAGGTCTACGGAGGCTCCAGGGTGGGAGTAGTTC|GTTGCGCCAGCGACTAAAAAGAGAATTAAATATGGGTGATGTTGAGAAAGGCAAGAAGATTTTTATTATGAAGCGTTCCCAGTGCCAC	1	1	0.163782765099475	0.102428735043176	N	N	3.5016965035439	3.48639814491089	3.48639814491089	splitr	13	0	0	0	N	0	N	N	0	0	ENSG00000237973	ENSG00000214810	-	-	1	6	567996	34187843	intron	upstream	RP5-857K21.6	CYCSP55	566454	34187216	+	+	0	566855	34187187	-	-	Y	1	-	N	SKBR3_13_2_1	8	0	8	8	2	1	N	N	0	0	2	0.827783467410055	0.653948939253943	0.827783467410055	0.653948939253943	2	0	-	0.60524179975777
141081	TTCTGGGGCCTCAGGGGGCTCATGTCCATGTCCATCGAATCTTCCATCGGGTGGCGGCACGCACTTAGGTAGGAGAGAAGGCGGACGGAGATAAAAGAACGCTGCTCCAGAGAACAACCGCGCAGGACGGA|CCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTTGTAATTCCGACCATAAACGATGCCAACTGGCG	2	1	0.177968179866624	0.223741933880014	N	N	3.45823374014688	3.36295036923788	3.36295036923788	splitr	4	0	0	0	N	0.0178571428571427	N	N	14119	1	ENSG00000181163	ENSG00000163046	-	+	5	2	170838141	133015542	utr5p	intron	NPM1	ANKRD30BL	170814120	132905164	+	-	0	170814869	133012795	-	+	Y	-	0.81549815498155	N	SKBR3_13_2_1	6	1	6	6	2	1	N	N	0	1	2	0.620837600557541	0.637393269905742	0.637393269905742	0.620837600557541	2	-	0	0.60524179975777
121779	GTCCCTGAAAGTGCCTCTCTACCCAGCAGAGGGGCTAAGGGAAAGTGGAGAGGTCTCTGCTGCTGCTGCTGCTGCTGCTGCTGC|TGCTGCTGCTGCTGCTGCTAAAGTTCCAGCAAAAAAGATGACGGCCGCGAGTAAAAAGGCTTCAGCCCAGAAGGTTCCTGCCCAGAAAGCCACAGGCCAGAAAGCAGCACCTGCTCCAAAAGCTCAGAAGGGTCAAAAAGCTCCAGCCCAGAAAGCACCT	22	1	0.739955222579433	0.879679677447905	N	N	2.59391793909999	3.09504739650626	2.59391793909999	splitr	23	0.107142857142857	0.107142857142857	0	N	0.285714285714286	N	N	16903	0	ENSG00000188643	ENSG00000139239	-	-	1	12	153585644	63359764	utr3p	intron	S100A16	RP11-848D3.1	153579362	63359095	-	+	0.154761904761905	153579598	63359563	+	-	Y	-	1	N	SKBR3_13_2_1	3	0.428571428571429	2.5	2	2	1	N	N	0.428571428571429	0	2	0.695338112624446	0.662226773928044	0.695338112624446	0.662226773928044	1	-	0	0.60524179975777
128325	TTGTGAGACTAACGTTTGTCTTTATATTTTCCTTTTTTTTTTTTTTTTTTT|TGAACTTTGAAGCTAGTGCATTGGAAAAATGCACCCTTTCCCTCCTTTGGAATGCTGTATTAATGTAGTATAATAATTACTGGTTTTGTAACTTGTTCTGGTAATGTCCTTCCCGGACTCTTTTTAAATGTCTCCCCCTAAGTTTTATACTTGATTGTATTATTAGTCTGTTTTTAAATGTTTTG	1	0.59108706487798	1	0.935920242646516	N	N	2.16923445060119	3.41216628098015	2.16923445060119	splitr	18	0.294117647058823	0.294117647058823	0	N	0.450980392156863	N	N	0	658	ENSG00000180532	ENSG00000166483	+	-	19	11	58190519	9615004	utr5p	utr3p	ZSCAN4	WEE1	58180303	9595228	+	+	0.294117647058823	58180445	9610839	+	-	Y	-	-	N	SKBR3_13_2_1	74	0.961538461538462	63	52	2	1	N	N	0.961538461538462	0	2	0.430447403053228	0.827783467410055	0.827783467410055	0.430447403053228	1	-	-	0.60524179975777
120831	AAACATGAAACTTATGACCTGACTTCACTCCACCCTTCATGCCTGCATTATGACAGAAACACGTCCCACTGCTCCTACTTATGTATGTACATCCAGAGCTCCAAACCTAAGCTGTGGCCCCCTCCTCCCAGCCCTACCC|TAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGGC	1	8.30279108905066e-05	0.311204357582937	0.306030290211129	N	N	3.00766301906899	2.86435529248713	2.86435529248713	splitr	2	0.0143884892086333	0	0	N	0.0287769784172662	N	N	6106	3	ENSG00000165272	ENSG00000230021	-	-	9	1	33447609	659930	utr3p	intron	AQP3	RP5-857K21.4	33441152	536816	-	-	0.0143884892086333	33441463	568267	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.504947915120133	0.430447403053228	0.504947915120133	0.430447403053228	2	-	0	0.60524179975777
141424	CAGGGAAGGGGAGCCTGGTTCTTCTCGTTTTCCTTTTTTTTTTTTTTTTTAAAA|GGTATGTTGTTAGCACACAGAACACTTCATTGTTTTGGGGGGAAGGGGCATATGTCACTAATAGAATGTCTCCAAAGCTGGATCGATGTGGAGAAAACACCTTTCCCTTCTAGTTTTGAGAGACTTCCTCTTGGCTCCCAGGAGGAGGGATTCCCTGACTTTGACACACATGGCCACCTTGG	1	1	0.800133926999915	0.844771979185218	N	N	2.31428498303465	3.42783536197374	2.31428498303465	splitr	28	0.314814814814815	0.296296296296296	0	N	0.462962962962963	N	N	1374	0	ENSG00000105576	ENSG00000226427	+	+	19	3	12834810	15417152	utr3p	downstream	TNPO2	HMGN2P7	12810008	15416880	-	-	0.388888888888889	12810275	15416455	-	+	Y	-	-	N	SKBR3_13_2_1	124	0.84	120	116	2	1	N	N	0.84	0	2	0.413891733705027	0.480114411097832	0.480114411097832	0.413891733705027	2	-	-	0.60524179975777
141361	AAGTGGTTTGGTTTAGACGTCCGGGAATTGCATCTGTTTTTAAGCCTAATGTGGGGACAGCTCATGAGTGTAAGACGTCTTGTGATGTAATTATTATACGAATGGGGGCTTCAACCGGGAGTACTACTCGATTGT|CAACGTCAAGGAGCTGGAAGTGCTGCTGATGTGCAACAAATCTTACTGTGCCGAGATCACTCACCATGTTTCCTCCAAGAACCGCAAAGCCATCGTGGAAAGAGCTGCCCAACTGGCCATCAAAGTCACCAACCCCAATG	2	1	0.109686129994209	0.10275139395098	N	N	3.68577320169385	3.45400817511148	3.45400817511148	splitr	13	0.0592592592592592	0.0444444444444444	0	N	0.118518518518518	N	N	794	0	ENSG00000175387	ENSG00000247508	+	+	18	17	45457515	58074333	intron	intron	SMAD2	AC005702.2	45357922	58042457	-	+	0.0592592592592592	45379782	58051071	+	+	Y	0.235886398771963	1	N	SKBR3_13_2_1	12	0	12	12	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	32	0	0.60524179975777
95967	CACGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTC|GTTATTGGAATTAGCCAGACAAATCACTCCAGCAACTAAGGCCATGCACCACCACCCGTGGAATCGAGAAAGAGCTATCAATCTGTCAATCCTGTCCGTGTCCAGGCTGGGTGAGTTTTCCCATGTTGAGTCAAATTAAGCTGCAGGCTCCACTCCTGGTGGTGCCCTTCTGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACTCCCCTCGGA	1	0.211152894854479	0.800133926999915	0.844771979185218	N	N	3.5580693557619	3.69784855983781	3.5580693557619	splitr	8	0.0620155038759689	0	0.333333333333333	N	0	N	N	0	1	ENSG00000226958	ENSG00000163046	-	-	X	2	108297792	133015542	intron	intron	RN28S1	ANKRD30BL	108297361	132905164	-	-	0.0620155038759689	108297515	133012401	-	-	Y	1	0.81549815498155	N	SKBR3_13_2_1	12	1	7.66666666666667	5	3	1	N	N	1	1	3	1.00161799556617	0.736727285994949	1.00161799556617	0.736727285994949	3	0	0	0.60524179975777
131183	TTTGATGAGCTTCCGGATCTGCTGACGGGAGTTGGCATTGGCGATTTCATTGGTCTCATTGGGGTCTAACCAGACCTTCTTCTTGCCACA|GCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTC	1	0.290467481002461	0.899266171301115	0.897571427984624	N	N	3.6052936758779	3.51360402781852	3.51360402781852	splitr	4	0.0853658536585366	0.0243902439024388	1	N	0.170731707317073	N	N	129759	0	ENSG00000108298	ENSG00000162669	-	+	17	1	37360980	91870426	coding	intron	RPL19	HFM1	37356536	91726323	+	-	0.0853658536585366	37357509	91853089	-	+	Y	-	1	N	SKBR3_13_2_1	10	1	6	2	2	2	N	N	0	1	2	0.645671104579843	0.430447403053228	0.645671104579843	0.430447403053228	2	-	0	0.60524179975777
26037	CGAGACTCTGGCATGCTAACTAGTTACGTGACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCCTTCAGCCACCCGAAATTGAGCAATAACAGATCTGTGATGC|TCAATCTCAGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGATGCCGACCGCTCCAGGGTCACATAACTAGTTGGCATGCCAGAGTCTCGTTCGTTATTGGAATTAGCCAGACAAATCACTCCAGCAACTAAGGCCATGCACCACCACCCGTGGAATCGAGAAAGAGCTATCAATCTGTCAATCCTGTCCGTGTCCAGGCTGGGTGAGTTTTCCCATGTTGAGTCAAAT	5	0.00365325061203476	0.102506221931001	0.206190375788294	N	N	3.62295434849776	3.74656995804013	3.62295434849776	splitr	15	0.0254237288135595	0	0	N	0.161016949152542	N	N	0	1	ENSG00000200434	ENSG00000163046	+	-	16	2	33965577	133015542	upstream	intron	5_8S_rRNA.2	ANKRD30BL	33965426	132905164	+	-	0.0254237288135595	33964001	133012301	+	-	Y	-	0.81549815498155	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	1	2	0.504947915120133	0.422169568379128	0.504947915120133	0.422169568379128	2	-	0	0.60524179975777
130363	GCCCTATTCAGTGGCAGCTTCTTGTTCCATAGGATTAAGGAAGACTCTGAGGAAATAAAAGTTGTTTGGAAAAATCCAGGTGTAGTTGCTTTGTATGTTGTGATGGGTAGAAGGGATGAAGTGAAGTGTGAAGGCCCCTCATACCCTCCATCTTGCCTCAGACTATGTCCTGGAACCCTGGGGCGGAGAAAGCGCCACTTTCATTCCTGCTTCTTGGGATTGTTGACGGCCACGTAGTGATAGAGAACGACAAGCAAGAAGAGCGACACGCCCAGCATGTTGGCGAAGATGGCGAGCTGCACGTCCGTGATCATCCTGACCA|GTCCTCCCGTCCCCTCCTCCCCCCCCTCCCCTGCAGCCCCACGGAGTCTACGCCGGGAGGAGTAGGAGGGCCGCTGCGGTAAGCTTTGAAGCCTAGGGTATGGGCCCAGGTGGATAGGCCACAGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAA	1	2.14538592398672e-10	0.407347078523834	0.444997527706131	N	N	3.67952553980864	2.30532664587164	2.30532664587164	splitr	4	0	0.0189573459715641	0	N	0.023696682464455	N	N	1077	0	ENSG00000228474	ENSG00000252318	-	+	2	2	27294641	133038738	intron	upstream	OST4	AC097532.1	27293340	133038647	-	-	0	27294475	133038844	+	+	N	-	-	Y	SKBR3_13_2_1	4	1	3	2	2	1	N	N	0	1	2	0.827783467410055	0.463558741749631	0.827783467410055	0.463558741749631	3	-	-	0.60524179975777
137684	ATTTTCAGCTTCGAAGGTGGAGGGAACATTCTGCTTTTCAGGCACCAGCTGTGAAGAAGAAACCAACAGTAACTAAAGGCAGATCTTCTAAAAAAGGA|ACAGGCTCGGCTCAATATTATTGAAGTAAAGCCAACAGCAAGTTAGCAAACCAGCAGGGGAGCAAATTGATTATACAGTTAACTGTGGAAAAACTGAAATTCTTTATTAAGGGAAAATGAAATACAGTTAATTTATGCTTCAACCAAGCCTTTCCCCACG	2	1	0.628320794780147	0.373143407944048	N	Y	3.32213219730662	3.73656073943594	3.32213219730662	splitr	258	0	0	0	N	0	Y	N	2719	799	ENSG00000067167	ENSG00000182307	+	+	8	8	71520622	146281416	coding	upstream	TRAM1	C8orf33	71485677	146277764	-	+	0	71495403	71357699	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	2	N	N	0	0	4	0.827783467410055	1.21684169709278	1.21684169709278	0.827783467410055	1	-	-	0.60524179975777
140259	AAAAAAAAAGTCTTTAAAAAAAGATTTACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGGCATGCTAACTAGTTACGC|GACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCCTTCAGCCACCCGAAATTGAGCAATAACAGATCTGTGATGCCCTTAGATGTCCGGGACTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTACC	41	1	0.678041143583659	0.650889040603044	N	N	3.76951977068882	3.37023110089298	3.37023110089298	splitr	148	0.657534246575342	0	1	N	0.794520547945206	N	N	0	1	ENSG00000240831	ENSG00000256642	+	-	12	16	20704522	33962503	intron	upstream	AC112777.1	NCRNA00273	20704358	33961052	+	-	0.719178082191781	20704492	33963913	+	-	Y	1	-	N	SKBR3_13_2_1	2	1	1.21428571428571	1	6	1	N	N	0.942307692307692	1	28	0.430447403053228	1.4486210679676	1.4486210679676	0.430447403053228	2	0	-	0.60524179975777
67373	TTTGGGATCCGCTTCATCCTCCTCTTCGGCAGCTCTCTTCAGCGCGGGCCCTTCATCATCCTCTTCTTCTTCTTCCTCATCTTCTTCTTCCC|ACTCATCCTAACCCTACTCCTAATCACATAATCTATTCCCCCGAGCAATCTCTAGTACAATATACACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAAAGCCCCCGCACCAATAGGATCCTCCCGAATCAGCCCTGACCCTT	1	0.286238989745407	0.552238018696473	0.629579620139678	N	N	2.31523323095017	2.96951990092433	2.31523323095017	splitr	21	0.184782608695652	0	0	N	0.141304347826087	N	N	2107	31	ENSG00000159335	ENSG00000132570	-	+	12	5	6880118	134343649	coding	intron	PTMS	PCBD2	6874682	134240596	+	+	0.184782608695652	6879154	134260368	-	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	3	0.230769230769231	2.2	2	5	1	N	N	0.230769230769231	0	5	0.860894806106457	1.5313994147086	1.5313994147086	0.860894806106457	3	-	0.4	0.60524179975777
116439	CCACTTCCGCTTCCGCTGGGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCG|GAAAGTCTTTGGGTTCGGAGGATTCCAGAAACATGAAGGAGAAGTTGGAGGACATGGAGAGTGTCCTCAAGGACCTGACAGAGGAGAAGAGAAAAGATGTGCTAAACTCCCTCGCTAAGTGCCTCGGCAAGGAGGATATTCGGCAGGATCTAGAGCAAAGAGTATC	38	0.323215013543916	0.585646422934426	0.324595737909126	N	N	3.6491271616355	3.36447795254773	3.36447795254773	splitr	16	0	0.193548387096774	0	N	0.693548387096774	N	Y	485	5095	ENSG00000147687	ENSG00000073605	+	-	8	17	125551699	38077313	coding	coding	TATDN1	GSDMB	125500726	38060848	-	-	0	125551266	38062524	-	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	6	N	N	0	0	3	0.45528090707553	1.24167520111508	1.24167520111508	0.45528090707553	4	-	-	0.60524179975777
139174	AGTCAGAGCTACCCGGGCACGAGCACCAGGTGGTTCATTCATTTGACCATATACCAGCGCTACCTTAGAGGTGGCATCTTTTAAGTTGATAACACCAGATTCAATCATTTCATGGTATAAATCATTGCCTTCACGGGTCCTCTCACCAACACCAGCAAACACAGAGTAACCACCATGGGCTTTGGCGACATTGTTGATTAACTCCATGATCAGTACAGTCTTGCCAACTCCAGC|ACCACCAACTGCTTAGCGCCCCGGGCCAAGGTCCTCCATGACAACTTTGGTATCGTGAAAGGACTCATG	3	1	0.397375327750185	0.686215388897037	N	N	3.74337746277462	3.54868263177367	3.54868263177367	splitr	15	0.115942028985507	0.115942028985507	0	N	0.115942028985507	N	N	26155	0	ENSG00000110955	ENSG00000216624	-	-	12	6	57039852	166478788	coding	intron	ATP5B	GAPDHP72	57031963	166477779	-	+	0.115942028985507	57037357	166478234	+	-	Y	-	1	N	SKBR3_13_2_1	19	0	14.5	10	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
139141	GGAGGCCAAACTGGTCCAAGCTTGTGGCTGAGGACCTCTCCCAGGACTGCTTCTGGACAAAGGTGAAGGAGGACCGCTTTGAGAACAATGAACTTTTCGCCAAACTTACCCTTACCTTCTCTGCCCAGACCAAGAC|TTTGAGACAGGGTCTCACTGTCACCCAGACTGGAGTACAGTGACACAATCATGGCTCACTGCAGCCTCAATCTACTGGCTCAAGCAATCCACCTACCTCAG	1	1	0.612610548302747	0.693969709788871	N	N	3.36361271664718	3.24169252428402	3.24169252428402	splitr	13	0	0.0198019801980198	0	N	0.0198019801980198	N	N	5931	727	ENSG00000131504	ENSG00000113552	+	-	5	5	140998622	141392606	coding	intron	DIAPH1	GNPDA1	140894583	141371314	-	-	0	140914000	141390530	-	-	N	-	3.55955663374524	Y	SKBR3_13_2_1	28	1	6.5	1	4	1	N	N	0	1	6	1.03472933426257	0.678782443276245	1.03472933426257	0.678782443276245	1	-	14.3333333333333	0.60524179975777
16303	TGTTGTTGCCCATGTGTTGCTACCATGGTAATCCTGCTCAGTACGAGAGGAACCGCAGGTTCAGACATTTTGTGTATGTGCTTGGCTTTGTTGGCCTTGGATAGGCGGTCCTCTGCCGTCCCCTCCGGCGGGCCGCTCTGCCTCAGGAGGGGCATGTCCCGCCATGCGCCGGGAACCAGGATCCGGTGCAGAGAGCCCCTCATCGTAGGAAATGGGCTGCTGCCAGAAGGGCGGTCACCCCCTGACCCA|CGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAG	1	7.70757990840044e-10	0.311204357582937	0.306030290211129	N	N	3.28599001835805	3.58849823915857	3.28599001835805	splitr	1	0	0	0.428571428571429	N	0	N	N	0	0	ENSG00000243092	ENSG00000162669	-	+	12	1	34372611	91870426	intron	intron	AC140847.1	HFM1	34372314	91726323	-	-	0	34372446	91853096	-	+	Y	1	1	N	SKBR3_13_2_1	2	1	1.14285714285714	1	1	1	N	N	1	1	7	0.612559765883441	1.5313994147086	1.5313994147086	0.612559765883441	1	0	0	0.60524179975777
72947	ACCCTTTCAGCCTGTGGCCTTCCACCCCTCACCTGCTGCCCTGTTGCCCGTTTTGGTGCCCAGCAGCTATACCAGCCACCCTGCCCCCAAGAAGGAAGTCATCATGGGCCGGCCTGGA|ACAGTGTGGACGAATGTGGAACCTCGCTCTGTGGCTGTGTTCCCTTGGCACTCCTTAGTCCCCTTCCTGGCACCCAGCCAGCCTGACCCCTCCGTGCAGCCGAGCGAGGCCCAGCAACC	4	1	0.770355652362188	0.78268225771684	N	Y	3.35513108135285	3.49631407755924	3.35513108135285	splitr	237	1	0	0	N	0.677966101694915	Y	N	0	539	ENSG00000213753	ENSG00000079432	+	-	19	19	59111168	42799949	upstream	intron	AC016629.2	CIC	59084870	42788817	+	+	0	42778725	42790919	+	-	N	-	0.278605371123156	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.75328295534315	0.827783467410055	0.75328295534315	2	-	3	0.60524179975777
138153	GGGCAATGAATGAAGTGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTTTGTTATAGTTTTTTATTTTTATGGGCTTTGGTGAGGGAGGTAGGTGGTAATTTGTATTTAATATTTTTAGTTGGGTGATGAGGAATAGTGTAA|GGAGTAGGGGGAAAGAGAAGGAGGTGTGCTAGTGTCTATCACAGGCTTTCTCAATTAGGTTTGCAGGAGAAAAAGC	1	0.986096646883214	0.261533274614987	0.233421673643755	N	N	2.92295792821763	3.08421279479488	2.92295792821763	splitr	11	0.131578947368421	0.0789473684210527	0	N	0.0921052631578946	N	N	3	1124	ENSG00000230021	ENSG00000108064	-	-	1	10	659930	60158981	intron	utr3p	RP5-857K21.4	TFAM	536816	60144782	-	+	0.131578947368421	568967	60156748	-	-	Y	0.828962371721779	2.16901680167106	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.769838624691351	0.471836576423731	0.769838624691351	0.471836576423731	2	0	19.5	0.60524179975777
92306	CGCAGTCATGAGTCGCTTCAAGTTTATCGGTAAGAGGAGCGTTTTCCACGCCCTTGGGTCTTTCTGACTTGTCCCGGGCGTCGGTCACCAAGGTCACAGGACCCAGGAATTGCGCCCTCCGGCATT|GAAGCTGAAGAGGGAACTACCCTTTTCATTCCGATCAATTAATACGAGAGAAAACCTGTATCTGGTGACAGAAACTCTGGAGACGGTAAAGGAGGAAACCCTGAAAAGCGACCGGCAATATAAATTTTGGAGCCAGATCTCTCAGGGCCATCTCAGCTATAAACACAAGGGCCAAAGGGAAGTGACCATCCCCCCAAATCGGGTCCTGAGCTATCGAGTAAAGCAGCT	11	1	0.599858470546412	0.449646356460405	N	N	3.63296356710195	3.52936639476796	3.52936639476796	splitr	1	0	0	0	N	0	N	Y	485	5095	ENSG00000147687	ENSG00000073605	+	-	8	17	125551699	38077313	coding	coding	TATDN1	GSDMB	125500726	38060848	-	-	0	125551169	38066177	-	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	6	Y	N	0	0	29	1.08439634230717	1.90390197504313	1.90390197504313	1.08439634230717	4	-	-	0.60524179975777
140541	AGGCCCAAGGCCAGTACCCCCTCCCCATCTGCACACCCTGTGTTCAAACCAGTCCCAGCTCCTGTCATGTTATTGGCTTCTGAGTATCTGTATTAATAGTTGTTCCTGCCAGCATATG|CTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGG	1	1	0.209527252024466	0.160545729398276	N	N	3.54569782317086	3.74490504608447	3.54569782317086	splitr	20	0.161016949152542	0	0	N	0.169491525423729	N	N	3240	0	ENSG00000122952	ENSG00000212932	-	-	10	21	58121036	48111157	utr3p	upstream	ZWINT	RPL23AP4	58116989	48110676	-	+	0.161016949152542	58117797	9827034	+	-	Y	-	-	N	SKBR3_13_2_1	3	1	2	1	1	1	N	N	0	1	2	0.687060277950346	0.827783467410055	0.827783467410055	0.687060277950346	1	-	-	0.60524179975777
88260	GGCACAGAGCGAGATGGGGCGTAATGGAATGCTTGAAGGCTGCTCCGTGATGTCGGTCGGAGCTTCCAGACTAGGCGAGGGCAGGGTGAGGCCTCGGGCACACAGCCGGCGCCCAGTCACCCGGCCCAGATGGAGGGCGGCCGGGCCCTGCACAGGCACTTGCCAAGGTGGC|ACACACACACGCACACACACACACACAGATCTGACGTAATCAAACTCCAGCCCTTGCCCGTGATGGCTCCTTGGGGTCTGCCTGCCCACC	1	0.683785762798524	0.899266171301115	0.897571427984624	N	N	3.25252712599539	2.79501077413178	2.79501077413178	splitr	17	0.155555555555555	0.155555555555555	0	N	0.177777777777778	N	N	83603	2645	ENSG00000130600	ENSG00000075785	+	-	11	3	2022700	128533639	intron	utr3p	H19	RAB7A	2016406	128444965	-	+	0.155555555555555	2016639	128532436	+	-	Y	0.849561144220065	1.21763435054266	N	SKBR3_13_2_1	1	0.255639097744361	1	1	0	1	N	N	0	0.255639097744361	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	2543	186.5	0.60524179975777
28396	TCCCGAGTAGCTGGAATTACAGGCATGCACCACCATGCCCAGCTAATTTTGTATTTTTAGAAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGCCTCGAACTCCCGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCT|TGGGATTACAGGTGTGAGCCACTGTGCCCGGCCACATACATCTTTCAAAAAGAAATACTAGTGAGAAGGGCCATCCACTCTCCGTACATCCTCTCCTGTGATTTGCTGTGAGACGTATGGCTGCCTTTGG	1	1	0.447538936456759	0.5	N	Y	3.41679307359967	3.52105259334297	3.41679307359967	splitr	276	0.292307692307692	0.184615384615385	0.5	N	0.638461538461539	N	N	1404	1426	ENSG00000144021	ENSG00000143578	-	-	2	1	96939087	153946839	intron	intron	CIAO1	CREB3L4	96931870	153940010	+	+	0.269230769230769	96938299	153944566	-	-	Y	-	0.400725937343966	N	SKBR3_13_2_1	728	1	379.5	31	2	1	N	N	1	0.353333333333333	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	61.5	0.60524179975777
90358	CCGGCGGGGACAGGCGGGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCGGCG|CTGCTGTATGGTTCTGCCTGGGCGGTATTCTGACTTAGAGGTGTTTAGTCATAATCCCACAGATGGCAGCTTTGCCCCATTGGCTCCTCAGCCAAGCACGTACACCAAATTTAATGGTTTCCACGTG	5	0.263565845052623	0.414263412500737	0.793809624211707	N	N	3.2965682984157	3.53977684095626	3.2965682984157	splitr	34	0.509090909090909	0	0.6	N	0.545454545454546	N	N	0	1032	ENSG00000241781	ENSG00000144283	-	-	9	2	79186950	159539391	intron	intron	AL161626.1	PKP4	79186649	159313476	+	+	0.509090909090909	79186659	159440688	-	-	Y	1	0.353068761975875	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0.727272727272727	1	5	0.546337088490636	0.471836576423731	0.546337088490636	0.471836576423731	3	0	7	0.60524179975777
92891	TGCTTTCTCGTGTTACATCGCGCCATCATTGGTATATGGTTAGTGTGTTGGTTAGTAGGCCTAGTATGAGGAGGGTTGTGGAGTGGAAGTGAAATCACATGGCTAGGCCGGAGGTCATTAGGAGGGCTGAGAGGGC|GTAGGAATTATATCCTTTTTACTCATTAGTTGATGATACGCCCGAGCAGATGCCAACACAGCAGCTATTCAAGCAATCCTATACAA	3	1	0.545501448874051	0.686215388897037	N	N	3.44611852920956	3.49168728493972	3.44611852920956	splitr	12	0	0	0	N	0.0581395348837208	N	N	3	31	ENSG00000230021	ENSG00000132570	-	+	1	5	659930	134343649	intron	intron	RP5-857K21.4	PCBD2	536816	134240596	-	+	0	569816	134261711	-	+	Y	0.828962371721779	1.2575464834446	N	SKBR3_13_2_1	4	0	4	4	2	1	N	N	0	0	2	0.769838624691351	0.463558741749631	0.769838624691351	0.463558741749631	2	0	1	0.60524179975777
116895	ATCAACCCTGACCCCTCTCCTTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAACCACCACCCCATCATACTCTTTCACCCACAGCACCAATCCTACCTCCATCGCTAACCCCACTAAAACACTCACCAAGACCTCAAC|CCCTGACAAAACACATAGCCTACCCCTTCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAA	3	1	0.586398215173431	0.862493518840099	N	N	3.13908856892656	3.40232489624531	3.13908856892656	splitr	27	0.0598290598290597	0.0598290598290597	0	N	0.128205128205128	Y	N	19641	93473	ENSG00000198695	ENSG00000198886	+	-	MT	MT	14673	12137	coding	coding	MT-ND6	MT-ND4	14149	10760	-	+	0.0598290598290597	14418	11514	+	-	N	1.37351464622455	-	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.60428193120934	0.827783467410055	0.827783467410055	0.60428193120934	2	4973.5	-	0.60524179975777
132658	GAAAGATGAGAACCAGGGGTGAGGGCTGAAGGAGAATCAAAGATAAAATACCAGTTT|AAAAAAAAAAAAAAAAGGGCGGGGGGGGGCTTTAGAAATATATTTC	3	0.0110601352104097	0.226651492638844	0.404166281443956	N	N	3.40129182647542	2.20502794831125	2.20502794831125	splitr	29	0.608695652173913	0.608695652173913	0	N	0.630434782608696	N	N	9938	0	ENSG00000179218	ENSG00000255512	-	-	19	11	13055304	134945793	utr3p	downstream	CALR	AP005135.2	13049414	134931675	+	-	0.608695652173913	13054922	104703133	-	-	Y	-	-	N	SKBR3_13_2_1	29	0.769230769230769	19.5	10	2	1	N	N	0.39622641509434	0.769230769230769	2	0.438725237727329	0.430447403053228	0.438725237727329	0.430447403053228	2	-	-	0.60524179975777
139393	TCCGTCTCAAACTTGGTTCGGAAGTCATCTGCAGCCAGACGGGCATTGTCGATCTGCAGGACAATCCTGGAGTTCTCAATGGTGGCACCAAGAATCT|CAGCTCTGTACTCCCCCTCACCTGGGAAGGTTCCCGTCCAGAAACTCAAATTGTCCTCCTCGGATGCAGGGGTCTTGGACACTGCAAGCATTTTCACTGAACACCCGCTGTATGCTGGAGGCCACCTCCACCCGGCGTTGGCCAGAGCATCCTCCCTGCCTACCTGCCCCCTCCCTTTACCTGGATGGCAGCCATGCCAGCTCCTCTCAGTTCCATTGGCATGGGTTTCTTCTCCCTGATATGTCCACCCTGACCCGCTCAGG	2	0.0468933287088121	0.0902043147701342	0.0727055885476373	N	Y	3.70144228268745	3.40129182647542	3.40129182647542	splitr	360	1	0	0	Y	0	N	N	58670	31	ENSG00000171345	ENSG00000232938	-	-	17	17	39684560	81188573	coding	upstream	KRT19	AC139099.1	39679869	81174666	-	+	0	39684174	39693044	+	-	N	-	-	N	SKBR3_13_2_1	3	0	1.57142857142857	1	3	3	N	N	0	0	7	0.827783467410055	1.73006744688701	1.73006744688701	0.827783467410055	2	-	-	0.60524179975777
99062	CCTTTAAGAACTGTAACACTCACCACGAGATTCTGCGGCTTCATTCTTGAAGTCAGTGAGACCAAGAACCCACCAATTCCGGATACATTTTGGTGACCCAGATGGGACTATTACCTATCGCCAAGCGGTGAGACCACTGCCTATCGCTGAGCGGTGAGACTATCACCTATCGCCAAGCA|TTGGTGCAGATTATGTTGGCAGCCGGTGACTGCAGAAAAAATAAAAATATCAAAACAGAAAAAAAACAAGGCCCTCCCCAAACCAAATGACTTAAAAAACAAAACCC	3	0.963689919136634	0.672179231214042	0.802063025170886	Y	Y	3.79722016713641	3.5774559507845	3.5774559507845	splitr	286	1	0	0	Y	0.00934579439252337	N	N	719	3501	ENSG00000104823	ENSG00000104824	+	-	19	19	39322497	39342987	intron	intron	ECH1	HNRNPL	39306068	39327029	-	-	0	39314037	39332779	+	-	N	0.914237290809833	1.06442965184212	N	SKBR3_13_2_1	93	0.69047619047619	33.3333333333333	1	2	2	N	Y	0.69047619047619	0	3	1.04300716893667	0.678782443276245	1.04300716893667	0.678782443276245	4	31	122.333333333333	0.60524179975777
139586	CTACAGACTTATTTCTTCTTGGACACACCCACGGTGCGGCCACGGCGGCCAGTGGTCTTGGTGTGCTGGCCTCGGACACGA|AGGCTGGGTGAGTTTTCCCATGTTGAGTCAAAT	1	0.0213050051365965	0.321839855309698	0.321669634186996	N	N	3.52567938596249	3.26531953111478	3.26531953111478	splitr	6	0.181818181818182	0.181818181818182	0	N	0.484848484848485	N	N	24166	1	ENSG00000231500	ENSG00000163046	-	-	6	2	33244287	133015542	coding	intron	RPS18	ANKRD30BL	33239787	132905164	+	-	0.181818181818182	33244171	133012504	-	-	Y	-	0.81549815498155	N	SKBR3_13_2_1	4	1	4	4	2	1	N	N	0	1	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	2	-	0	0.60524179975777
73941	GAGGTGGGGATCAATAGAGGGGGAAATAGAATGATCAGTACTGCGGCGGGTAGGCCTAGGATTGTGGGGGCAATGAATGAAGTGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTTTGTTATAGTTTTTTATTTTTATGGGCTTTGGTGAGGGAGGTAGGTGGTAATTTGTATTTAATATTTTTAGTTG|GTTGATATAGACAGCAGGACGGTGGCCATGGAAGTCAGAATCCACTAAGGAGTGTGTAACAACTCACCTGC	3	1	0.951795713797723	0.802063025170886	N	N	2.82614697399878	3.70889084821189	2.82614697399878	splitr	10	0.0704225352112676	0	0.5	N	0.154929577464789	N	N	3	0	ENSG00000230021	ENSG00000252666	-	-	1	19	659930	36066721	intron	upstream	RP5-857K21.4	AD000090.1	536816	36066627	-	+	0.0704225352112676	568987	36066534	-	-	Y	0.828962371721779	-	N	SKBR3_13_2_1	9	1	6	3	2	1	N	N	0	1	2	0.430447403053228	0.687060277950346	0.687060277950346	0.430447403053228	2	0	-	0.60524179975777
135172	TGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCAGCCCGAGGTTATCTAGAGTCACCAAA|GCCGCCGCGCCGCCATCATGGACACCAGCCGTGTGCAGCCTATCAAGCTGGCCAGGGTCACCAAGGTCCTGGGCAGGACCGGTTCTCAGGGACAGTGCACGCAGGTGCGCGTGGAATTCATGGACGACACGAGC	2	0.17238315544984	0.0770628978282242	0.0543971230403394	N	N	3.66641711189479	3.24371881103044	3.24371881103044	splitr	11	0.0820895522388061	0	0	N	0.0895522388059702	N	N	0	0	ENSG00000212932	ENSG00000227097	-	-	21	11	48111157	82400944	upstream	intron	RPL23AP4	RP11-742N3.1	48110676	82400571	+	+	0.0820895522388061	9827289	82400584	-	-	Y	-	1	N	SKBR3_13_2_1	6	1	5	4	2	1	N	N	1	0	2	0.438725237727329	0.736727285994949	0.736727285994949	0.438725237727329	1	-	0	0.60524179975777
77969	CTCCTCAATAGCCATCGCTGTAGTATATCCAAAGACAACCATCATTCCCCCTAAATAAATTAAAAAAACTATTAAACCCATATAACCTCCCCCAAAATTCAGAATAATAACACACCCGACCACACCGCTAACAATCAATACTAAACCCCCATAAATAGGAGAAGGCTTAGAAGAAAACCCCACAAACCCCATTACTAAACCCA|ATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAGCTGCTGGCATCACTATACTACTAACAGACCGCAACCTCAACACCACCTTCTTCGACCCCGCCGGAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCTTATCCTACCAGGCTTCGGAATAATCTCCCATATTGTAACTTACTACTCCGGA	1	2.54600287623806e-06	0.447538936456759	0.5	N	N	3.04703754607642	3.47233119514066	3.04703754607642	splitr	20	0.0738916256157637	0.0738916256157637	0	N	0.177339901477833	Y	N	19641	121749	ENSG00000198695	ENSG00000198804	-	-	MT	MT	14673	7445	coding	coding	MT-ND6	MT-CO1	14149	5904	-	+	0.0738916256157637	14645	6437	+	-	N	-	-	N	SKBR3_13_2_1	4	0	3	2	2	1	N	N	0	0	2	0.827783467410055	0.471836576423731	0.827783467410055	0.471836576423731	1	-	-	0.60524179975777
122237	GGGAGGAATGGGGTGGGTTTTGTGTGTTCAAACTGTCATTTTATTTTTACGTTGTTAGATATAGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGCAGGTAGAAGTAGAGGTTAAGGAGGGTGATGATGGCTATGATGGTGGGGATGATGAGGCTATTGTTTTTTGTGAATTCTTCGATAATGGCCCATTTGGGCAAAAAGCCGGTTAGC|AGGGGCAACCAGGGGAAGATGGGGTGCTGGAGGAGAGCTTGTGGGAGCCAAGGAGCACCTTGGACATCTGGAGTCTGGCAGGAGTGATGACGGGTGGAGGGGCTAGCTCGAGGCAGGGCTGGTGGGGCCTGAGGCCAGTGAGGAGTGTGGAGTAGGCGCCCAGGCATCGTGCAGACAGGGCGACATCAGCTGGGGACGATGGGCCTGAGCTAGGGCTGGAAAGAAGGGGGAGCCAGGCATTCATC	1	2.46926326967363e-05	1	0.935920242646516	N	N	3.47279520345708	3.1703920357936	3.1703920357936	splitr	7	0	0	0	N	0.00469483568075113	N	N	0	83603	ENSG00000225630	ENSG00000130600	-	+	1	11	566063	2022700	intron	intron	RP5-857K21.8	H19	565020	2016406	+	-	0	565787	2019009	-	+	Y	1	6.31475812496908	N	SKBR3_13_2_1	2	0	2	2	12	1	N	N	0	0	12	1.58934425742731	1.02645149958847	1.58934425742731	1.02645149958847	2	0	717.083333333333	0.60524179975777
131425	AATTTGAAATGAGCTCTCTCAGAAAGATCTCTTTGTTCGAGTAGAAAGTATTGATGATCAATGACATCAACTGGGCAATTTCTGCCTGAAAGGCGAATGTCTCAACCTCCTCCTCCTC|ACAATCATGGCAAGCCAACGCCACTTATCCAATGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATGACATTCACAGCCATAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTA	1	1	0.163782765099475	0.102428735043176	N	N	3.36249994129059	3.55141111872275	3.36249994129059	splitr	9	0.076271186440678	0.0508474576271186	0	N	0.101694915254237	N	N	0	31	ENSG00000224411	ENSG00000132570	+	+	11	5	27912580	134343649	intron	intron	RP11-1033A18.1	PCBD2	27910385	134240596	-	+	0.076271186440678	27912544	134263501	+	+	Y	1	1.2575464834446	N	SKBR3_13_2_1	9	0	6.5	4	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	0	1	0.60524179975777
17427	GGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTATTCGTAGGTTCAGTACCATTGATGGCCAATTGATTTGATGGTAAAGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGTAGGGATGGGAGGGCGATAAGGACTAGGATGATG|ATGAGGAGGATGAGGAGGACAAGGAGGAAGATGAGGAGGAAGATGTCCCCGGCCAGGCCAAGGACGAGCTGTAGAGAGG	2	0.568846524554264	0.226190941649262	0.313727891882291	N	N	3.14484171727181	2.54030862845298	2.54030862845298	splitr	7	2.22044604925031e-16	0	0	N	0.0379746835443038	N	N	3	9938	ENSG00000230021	ENSG00000179218	-	-	1	19	659930	13055304	intron	coding	RP5-857K21.4	CALR	536816	13049414	-	+	2.22044604925031e-16	568346	13054654	-	-	Y	0.828962371721779	1.20369589311681	N	SKBR3_13_2_1	2	0.661870503597122	2	2	2	1	N	N	0	0.661870503597122	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	0	540.5	0.60524179975777
135951	AGTCATTTTCCTCCGACGGAGTCACTCTTGGAAGTCACCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCATGAGAATCACTTGAACCCGGGAGGTGGAGGTTACGATGAGCCAAGATCACACCACTGCACTCCAGCCTGTGTGACAGAGCGAGAC|CCTCCAGGTCTGGGCAGGTCCCTCACCGGCCTGTGCCTGTGTGGCCTGCTCCTCCCCTTCCACCTCCTCCCAGGGCCACAGGCACCCAGTCTGAGCTTG	15	0.950321907182784	0.633602603342092	0.350697555274618	N	Y	3.40631984667906	3.20335106704647	3.20335106704647	splitr	257	1	0.0303030303030303	0	N	1	Y	N	2685	18	ENSG00000205336	ENSG00000203451	-	+	16	16	57698944	90233540	utr5p	upstream	GPR56	AC133919.1	57662419	90232651	+	+	0	57675504	57654049	-	+	N	-	-	N	SKBR3_13_2_1	69	0.728476821192053	10.0952380952381	1	14	4	N	N	0.728476821192053	0	21	1.24995303578918	0.778116459365451	1.24995303578918	0.778116459365451	1	-	-	0.60524179975777
25659	GGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTATTCGTAGGTTCAGTACCATTGATGGCCAATTGATTTGATGGTAA|GCGGAAGGGTACAGCCAATGCCCGAATGCCAGAGAAGGTCACATGGATGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACATGTA	1	0.532692861392658	0.612610548302747	0.693969709788871	N	N	3.58593758607883	3.53039946453785	3.53039946453785	splitr	6	0.064935064935065	0.064935064935065	0	N	0.116883116883117	N	N	3	129759	ENSG00000230021	ENSG00000108298	-	-	1	17	659930	37360980	intron	coding	RP5-857K21.4	RPL19	536816	37356536	-	+	0.064935064935065	568420	37359246	-	-	Y	0.828962371721779	0.600227238010497	N	SKBR3_13_2_1	4	0	4	4	2	2	N	N	0	0	2	0.827783467410055	0.670504608602144	0.827783467410055	0.670504608602144	2	0	18573	0.60524179975777
120730	GGGCCGCCTGGAGGCGGAGCTGCGGAGCATGCAGGATGTGGTGGAGGACTTCAAGAA|CAAGTATGAGGATGAGATCAATAAGCGTACAGAGATGGAGAACGAATTTGTCCTCATCAAGAAGGATGTGGATGAAGCTTACATGAACAAGGTAGAGCTGGAGTCTCGCCTGGAAGGGCTGACCGACGAGATCAACTTCCTCAGGCAGCTATATGAAGA	4	0.438906018794748	0.125368498489898	0.231887650119399	N	Y	3.56249325989018	3.38970582419822	3.38970582419822	splitr	58	0.596491228070175	0.754385964912281	0	N	0.771929824561403	N	Y	34840	64916	ENSG00000135480	ENSG00000170421	+	-	12	12	52662180	53298868	coding	coding	KRT7	KRT8	52626954	53290971	+	-	0.666666666666667	52629150	53295003	+	+	N	-	-	Y	SKBR3_13_2_1	19	0	11.2	3	5	2	N	N	0	0	5	0.778116459365451	1.03472933426257	1.03472933426257	0.778116459365451	4	-	-	0.60524179975777
109999	ATGGAAATCCCATCACCATCTTCCAGGAGCGAGATCCCTCCAAAATCAAGTGGGGCGATGCTGGCGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCATGGAGAAGGCTGGGGCTCATTTGCAGGGGGGAGCCAAAAGGGTCATCATCTCTGCCCCCTCTGCTGATGCCCCCATGTTCGTCATGGGTGTGAACCATGAGAAGTATGACAACAGCCTCAA|GATCATCAGCAATGCCTCCTGCACCACAAGATGATTAGCC	6	1	0.378712451384142	0.781713615097424	N	Y	3.55401162459584	3.53824925764641	3.53824925764641	splitr	0	0.675	0.675	0	N	0.925	N	N	20857	0	ENSG00000256901	ENSG00000219930	-	-	12	X	6647316	135160790	coding	intron	AC006064.3	GAPDHP67	6645876	135160003	-	+	0.675	6646373	135160442	+	-	Y	-	1	N	SKBR3_13_2_1	6	0	4.4	3	5	1	N	N	0	0	5	1.43206539861939	0.430447403053228	1.43206539861939	0.430447403053228	2	-	0	0.60524179975777
134279	AAAGAGAAGGAACAGAGGACACGTCACTTACTCACAGACCTTCCTCTCCCTCCAGAGCTCCCTGGTGGAGATCTGTCTCCCCCAGACTCTCCAGAACCAAAGGCAATCACACCACCTCAGCAACCATATAAAAAGAGACCAAAAATTTGTTGTCCTCGTTATGGAGAAAGAAGAC|AAAAAAAAAGCGACTGGGCAATGTCAATACAAATTAAAACTA	1	0.857250964338357	0.526775457519482	0.600084425908804	N	N	3.46448140203209	3.08561239702874	3.08561239702874	splitr	18	0.380952380952381	0.380952380952381	0	N	0.380952380952381	N	N	20564	409	ENSG00000167258	ENSG00000243004	+	+	17	7	37690800	20180076	coding	intron	CDK12	AC005062.2	37617739	19958604	+	-	0	37649035	20057409	+	+	Y	-	25.4271206690562	N	SKBR3_13_2_1	15	0.814814814814815	13	11	2	1	N	N	0	0.814814814814815	2	0.827783467410055	0.44700307240143	0.827783467410055	0.44700307240143	2	-	0	0.60524179975777
137822	CTTCGGAGAAGCAGTGGTGGGTTCCATGTGATGGTGGAGTAGGAGGCAGGTCTCCGCGTCTCGCTGTATTGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAAGCTCTGCTTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCACCACGCC|CAGCTGGTTGGTGGAGAATTTGAACTGGAGATGAACTTTATTATCCAGGATGCTGAGAGTATAATACGCATGACAGAGCTTTTAGAGCACTGTGATGTAACATGTCAAGCAGAAATAGGGAGCATGTTTACAGCCATTCTATGAA	2	0.0794673809611986	0.746902376490081	0.902195137443948	Y	Y	3.60103760561896	3.37232774565629	3.37232774565629	splitr	336	1	0.0206896551724136	0	N	0.951724137931034	N	N	1015	0	ENSG00000225210	ENSG00000249549	+	+	14	14	19695180	19941024	intron	downstream	AL589743.1	AL589182.1	19650018	19858667	+	-	0	19656221	19857073	+	+	N	-	-	Y	SKBR3_13_2_1	55	0.550387596899225	32	9	2	1	N	N	0.550387596899225	0	2	0.827783467410055	0.637393269905742	0.827783467410055	0.637393269905742	1	-	-	0.60524179975777
106373	CTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGC|CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCG	1	0.606132694473333	0.447538936456759	0.5	N	Y	3.54193626645188	1.8481333092458	1.8481333092458	splitr	206	0.954545454545455	0.75	0.5	N	0.863636363636364	N	N	20	814	ENSG00000175898	ENSG00000164916	+	-	19	7	10341948	4811074	utr3p	utr3p	S1PR2	FOXK1	10332109	4683388	-	+	0.954545454545455	10333882	4807752	-	-	Y	-	-	N	SKBR3_13_2_1	574	1	361	148	2	1	N	N	0.486486486486487	1	2	0.612559765883441	0.827783467410055	0.827783467410055	0.612559765883441	2	-	-	0.60524179975777
140603	TCAGTCTGGGGCAGGTAACAACTGGGCCAAAGGCCACTACACAGAGGGCGCCGAGCTGGTTGATTCTGTCCTGGATGTGGTACGGAAGGAGGCAGAGAGCTGTGACTGCCTGCAGGGCTTCCAGCTGACCCACTCACTGGGCGGGGGCACAGGCTCTGGAATGGGCACTCTCCTTATCAGCAAGAT|GGGCTGATCATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACGTGGCCATAGGTGAGCAGAAGGGTACAGCCAATGCCCGAATGCCAGAGAAGGTCACATGGATGAGGAGAATGACGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACACGTATCACAGCCT	2	2.99632405813088e-05	0.258666488296237	0.373143407944048	N	N	3.57336771439491	3.58320909912975	3.57336771439491	splitr	5	0.0215053763440859	0	0	N	0.032258064516129	N	N	24435	0	ENSG00000196230	ENSG00000218227	+	-	6	5	30693203	177483195	coding	intron	TUBB	RP11-889L3.1	30687978	177482605	+	+	0.0215053763440859	30691303	177482746	+	-	Y	-	1	N	SKBR3_13_2_1	6	0	5	4	2	1	N	N	0	0	2	0.579448427187038	0.438725237727329	0.579448427187038	0.438725237727329	3	-	0	0.60524179975777
19506	AGAAAGGCCCCGCGTCCCTCCCCGGCGCCCCCCCCCCCGCGCCTCCTCCCCCCGGCCGGTGCCGGGGTTGCAGCGAGCGGCGGCGGACGATCCAGGGAAGCGCTGACCTCTGCGGAGGCGGCGGGGGCTCAGCATCGGGCCGGGGCCGGGGGGGCGCCG|CCCAGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGT	1	1	0.261533274614987	0.233421673643755	N	N	2.47916407768506	3.48743121468078	2.47916407768506	splitr	4	0	0	0	N	0	N	N	0	0	ENSG00000205090	ENSG00000251948	-	+	1	19	1475833	24184165	intron	intron	C1orf70	AC092279.1	1470554	24184075	-	-	0	1475768	24184153	-	+	Y	1	1	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0.84	1	4	0.413891733705027	0.571170592512938	0.571170592512938	0.413891733705027	2	0	0	0.60524179975777
68912	CCAATCAGAGCCCCAATCACCTGCACAGGCCGCCCCTCCTGGGAGCGCATGCGGATCCAGTGGTCTGAGATGTTGAGAATGACAAGGGGATGGAGAGCGACGGAAACACTCCCAGTCACTCCGCAGGCCATCACGCTGGGGACTACTGCTGCATCCACCTCCATCCCGCTGCTTCCTCCGGTCCCGTTCGTAGCTGCA|CCCCCCCCCGCCGCCGCTGCCATTTCTAGGCTAATAAACTAAGAATCAT	1	1	0.842938967773855	0.869602123524748	N	N	3.33528047801382	3.11916341767403	3.11916341767403	splitr	25	0.346938775510204	0.346938775510204	0	N	0.448979591836735	N	N	2304	0	ENSG00000168090	ENSG00000213147	-	-	7	10	99689823	135516024	coding	upstream	COPS6	XXyac-YRM2136_A.1	99686577	135515571	+	+	0.346938775510204	99686637	42739123	-	-	Y	-	-	N	SKBR3_13_2_1	1	0.470588235294118	1	1	0	1	N	N	0	0.470588235294118	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	1	-	-	0.60524179975777
129218	GGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCAGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGG|ACTTTCTGTAAGAAGTGTGGCAAGCACCAACCCCATAAAGTGACACAGTACAAGAAGGGCAAGGATTCTCTGTATGCCCAGGGAAAGC	1	0.59108706487798	0.375556752806067	0.399915574091196	N	N	3.61360747730288	3.52936639476796	3.52936639476796	splitr	11	0	0	0	N	0.0795454545454546	N	N	0	1016	ENSG00000212932	ENSG00000021776	-	-	21	15	48111157	35261995	upstream	intron	RPL23AP4	AQR	48110676	35147750	+	-	0	9827281	35235308	-	-	Y	-	1.31979085730939	N	SKBR3_13_2_1	12	1	8.5	5	2	1	N	N	1	0	2	0.480114411097832	0.827783467410055	0.827783467410055	0.480114411097832	1	-	15	0.60524179975777
59534	GGCCTCAAGGGGGCTCTGCGTCCATCAGGGGCAAAGCCACGGCTGAAGCCATCAGGGCCCCGGGGCAGCCGGAGCACAGGCACGGGAATGTTCACTGGAGTTTGCATTGTCTTGGCTCCCTCCTGGTGGCCCCGGTGCTCCAGAGAGGAGATCAGCTCAGTGGACAAACATTTGGCCAACTCTTCACAATTGCCAGGGTGTGGAACCAGCTGAGTTGTCAACAGAGAAGCCGCCA|GACCTGCGGCCGCTGCCTGCAGACCTTCCCGTTGGAGGCCATCACTGCCTTCATGGACCACAAGAAGCTGGGCTGTCAGCTCTTCAGAGGCCCCAGCCGCGGCCAGGGCTCAGGTGAGTAAAGCCGGGT	1	0.0382449172354632	0.311204357582937	0.306030290211129	Y	Y	3.56335849579072	3.42464286670823	3.42464286670823	splitr	364	1	0.0387596899224806	0	Y	0.0852713178294575	N	N	276	265	ENSG00000142252	ENSG00000170684	-	+	19	19	45594782	45579845	utr5p	coding	GEMIN7	ZNF296	45582530	45574759	+	-	0	45583168	45579083	-	+	N	-	2.0698639235944	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	9	0.60524179975777
141040	AAGGGACTTCCTGTAACAACGCATCTCATATTTGGAATGACTATTAAAAAAACAACAATGTGCAATCAAAGTCCTCGGCCACATTGTGAACTTTGGGGGATGCTCGCTCCAACCGACTGCTGTCACCTTCACCGTTCCAGTTTTTAAATCCTGAGTCAAGCCA|AAAAAAAAAAAAAAAAAAACTCATGTCAGCAGCAGAAAACATATT	2	0.598588435403659	0.467754455729131	0.686272108117709	N	N	3.47552369040616	2.47353920614952	2.47353920614952	splitr	20	0.444444444444444	0.444444444444444	0	N	0.622222222222222	N	N	30285	427	ENSG00000075624	ENSG00000185596	-	+	7	15	5603415	102516768	utr3p	upstream	ACTB	WASH1	5566782	102501356	-	+	0.444444444444444	5567255	97342629	+	+	Y	-	-	N	SKBR3_13_2_1	166	0.84	121.5	77	2	1	N	N	0	0.84	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	2	-	-	0.60524179975777
106763	ATCATTTGTTTTGAGGTTAGTTGGATTAGTCATTGTTGGGTGGTAATTAGTCGGTTGTTGATGAGGTATTTGGAGGTGGGGATCAATAGAGGGGGAAATAGAATGATCAGTACTGCGGCGGGCAGACCTAGGATTGTGGGGGCAATGAATGAAGCGAACAGATTTTCGTTCACTTTGGTTCTCAGGGTTTACTATAGTTTTTTATTTTTATGGGCTTTGGTG|CAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAAC	1	1	0.447538936456759	0.5	N	N	2.80940497044194	3.5319270478477	2.80940497044194	splitr	21	0	0	0	N	0.0117647058823529	Y	N	42	0	ENSG00000185304	ENSG00000252318	-	+	2	2	88285309	133038738	intron	intron	RGPD2	AC097532.1	88055474	133038647	-	-	0	88124573	133038717	-	+	N	1.62714648350007	1	N	SKBR3_13_2_1	8	1	6	3	7	1	N	N	0	1	7	1.62245559612371	0.662226773928044	1.62245559612371	0.662226773928044	1	0	0	0.60524179975777
26377	ATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAG|CGGGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCA	1	0.000586870500636018	0.612610548302747	0.693969709788871	N	N	3.43614916339873	3.21700744166278	3.21700744166278	splitr	6	2.22044604925031e-16	0	0	N	0.987951807228916	N	N	0	0	ENSG00000252197	ENSG00000162669	-	+	8	1	70602417	91870426	intron	intron	AC091047.1	HFM1	70602344	91726323	-	-	0.289156626506024	70602383	91853146	-	+	Y	1	1	N	SKBR3_13_2_1	10	1	5	3	6	1	N	N	1	1	6	1.00161799556617	1.34100921720429	1.34100921720429	1.00161799556617	2	0	0	0.60524179975777
115991	CGGCGGCCACTTCCGCTTCCGCTGGGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCG|GTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGCAGCCTTTTTAATGCTGCTGGGGTCTTGGTAGAAGCGCGTGCAAAAGCCATTCTGGACTTCCTGGATGCCCTGCTAGAGCTGTCTGAAGAGCAGCAGTTTGTGGCTGAGGCCCTGGAGAAGGGGACCCTTCCTCTGTTGAAGGACCAGGTGAAATCTGTCATGGAGCAGAACTGGGATGAGCTGGCCA	51	0.0713516129034788	0.561500847274806	0.579839508800461	N	N	3.6491271616355	3.64553343878587	3.64553343878587	splitr	5	0.0147058823529413	2.22044604925031e-16	0	N	0.632352941176471	N	Y	485	5095	ENSG00000147687	ENSG00000073605	+	-	8	17	125551699	38077313	coding	coding	TATDN1	GSDMB	125500726	38060848	-	-	0.0147058823529413	125551266	38062238	-	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	6	N	N	0	0	4	0.422169568379128	0.728449451320848	0.728449451320848	0.422169568379128	4	-	-	0.60524179975777
102358	CCCGCCCCGGCGAGGCGCTGGGGAGGCCCGGGTGGGGAGAAGAAATGGGGCCTGGGGGACGGTAGGAGCCTCCGTGCGGAGACCACTGTTCAAGGCCACA|GGATTATGTTCCATGGCAGCAGTCCAAGCAGGAAACCAAGCCATCTACTCTGCCTCCAGTCCAACAAGCCAACAGCCTTCATACAAGCAAAATGAAGACTTTGACTAGGGTCCAACCAGTGTTTCACTTCAAGCCCACTACGGTGGTGACAAGCTGCCAGCCGAAGAATCCAAGAGAACTACATAG	2	1	0.0758976243046465	0.0528632748897925	N	Y	3.77208042376856	3.58849823915857	3.58849823915857	splitr	286	0	0	0	Y	0.24	N	Y	49	59	ENSG00000225377	ENSG00000196476	+	-	20	20	328868	271390	intron	coding	RP5-1103G7.4	C20orf96	300957	251504	-	-	0	328744	270317	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	4	0.703615947298547	1.00989583024027	1.00989583024027	0.703615947298547	4	-	-	0.60524179975777
126678	GATCAAACCCTGCCCACCAGCTCCCCTCGTCCAACCAGCTGCCACGTCCTGTAACCAAAAGTGACCGGGATGAATGCCTGGCTCCCCCTTCTTTCCAGCCCTAGCTCAGGCCCATCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCT|CTCCTCCAGCCACCACCCACAATCACAAGAAGATTCCCACCCCTGCCTCCCATGCCTGGTCCCAAG	6	0.0416662358998528	0.118761274235795	0.278488573134645	N	N	3.61464054707278	3.10078696448237	3.10078696448237	splitr	22	0.151515151515152	0.151515151515152	0	N	0.212121212121212	N	N	83603	34840	ENSG00000130600	ENSG00000135480	-	-	11	12	2022700	52662180	intron	utr3p	H19	KRT7	2016406	52626954	-	+	0.151515151515152	2018974	52642564	+	-	Y	-	4.5681287977939	N	SKBR3_13_2_1	1	0	1	1	0	2	N	N	0	0	2	0.827783467410055	0.571170592512938	0.827783467410055	0.571170592512938	2	-	2586	0.60524179975777
140865	GGGCTTGCCGATGTGCTGGTGGTTGCCACCTCCAAAAGGATGCTCCACAGGATTCATGGCCACACCCCGTACTCGTGGCCAGCAGTTCCTCTTTGCCTTATATTTGTGGTACGCCCGGCCAGCCTTCAAGATGGGTTTGTCAATTCGGCCACCTCCAGCC|ACCACACCACACACAACCAGTCCCGAAAATGGCACAGAAATGGTATCAAGAAACCCCGATCACAAAGATACGAATCTCTTAAGG	2	0.89199134830099	0.10660547549289	0.0978048625560518	N	N	3.63296356710195	3.01910653502718	3.01910653502718	splitr	10	0.0952380952380952	0.107142857142857	0	N	0.178571428571428	N	N	18822	6	ENSG00000161016	ENSG00000196376	-	-	8	6	146017972	118638839	coding	intron	RPL8	SLC35F1	146015150	118228689	-	+	0.0952380952380952	146015848	118320154	+	-	Y	-	0.881866509155345	N	SKBR3_13_2_1	45	0	25	12	3	1	N	N	0	0	3	1.01817366491437	0.811227798061854	1.01817366491437	0.811227798061854	1	-	0	0.60524179975777
124814	GTTGTACTTGTGGTGGATCCAGCAAGCGATGTCCAGCAGTTTGCAGTGGATGGAGGGGACCCACAGGTTGGAGGAGCCCGTGTCGAAGACGACTGTGAAGCACTGGGGGGGCGTCCCGATGCCAATCTCCCCGTAGTACTGGGCGTCCATGTAGTTCTTGAGCACCTCGGGAATGGGCCCCTCGGTCACGGCTGGCACCGCCTGGGAGTACTTTGAGACGGGGCCTTTGGCAATCAGGTCCTCCACAGAGCCC|CCATACCTCCCCTCCACATCACTGACACAGCTGAGCTTGTTATCCATCTCCCCAAACTTTCTCTTTCTTTGTACTTCTTGTCATCCCCACTCCCAGCCCCTTTTCCTCTATGTG	1	0.00185563290765623	0.375556752806067	0.399915574091196	N	N	3.53871326596283	3.41017468935388	3.41017468935388	splitr	10	0.0789473684210527	0.0789473684210527	0	N	0.157894736842105	N	N	28175	3452	ENSG00000117984	ENSG00000141756	-	-	11	17	1785222	39979465	coding	utr3p	CTSD	FKBP10	1773982	39968962	-	+	0	1782647	39978961	+	-	Y	-	0.583673604520362	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.44700307240143	0.827783467410055	0.44700307240143	1	-	131	0.60524179975777
141325	CCAAAAAAAAAAAGCAATTGAATTGTTTTGTAGCTGGAGGCATGGGCAAGGGGGGTCCCCAGGTAGTAAACTCCCCAGGTGGGCTGAGGGCTAGGGCTGAGCCTCAGGTGGGTCTCCTGTTCCCAGTGCTACCCTGCATAGCGGCCTCCTTCCCAGGCTCTGGGGCAGCGCAGGAGGGGTAGGCTGGGAGGGGCTGCCGCAGCTGTTCACTTGGGCAGGACGTCAGAGGACTCAGACACCAGCTTCCCATCACGTGTCTCGAT|CTTCTCCACCAACTAGCGGTCCCTGGGCTCTGTCCAGGCGACCAGCTACGGCGCCCGGCTGGTCAGCAGCACAGCCAGAGTCTATGCAGGCGCCGGGGGCTCTGGTTCCCGGATCTCTGTGTCCCGCTCCACCAGCTTCCAGGGCGGCTTGGAGTCCGGGGGCCTGGCCGCGGGGATGGCCGGGGGTCTGGCAGGAATAGGAGGCATCCAGCACGAGAAGGAGACCATGCAAAGCCTGAAAGACTGCCTGGCCTCCTACCTGGACAGAGTGAGGAGCCTGGAGACCGAGAACCGGAGGCTGGAGAGCAAAATCCGGTAGCACTTGGAGAAGAAGGGACCCCAGGTCA	1	1.14742781747701e-13	0.254583648908217	0.223418152789081	N	Y	3.51207644450867	3.49168728493972	3.49168728493972	splitr	610	0.923954372623574	0	0	N	0	N	N	64916	0	ENSG00000170421	ENSG00000235275	+	-	12	5	53298868	122973097	coding	intron	KRT8	KRT18P16	53290971	122971804	-	+	0	53291268	122971827	+	-	Y	0.928870452477372	1	N	SKBR3_13_2_1	99	0	55.5	12	2	1	N	N	0	0	2	0.827783467410055	0.571170592512938	0.827783467410055	0.571170592512938	4	3436.5	0	0.60524179975777
108159	ATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACCTCCATCATCACCTCAACCCAAAAAGGCATAATTAAACTTTACTTCCTCTCTTTCTTCTTCCCACTCATCCTAACCCTACTCCTAAT|GCTAAAACTAATCGTCCCAACAATTATATTACTACCACTGACATGACTTTCCAAAAAACACATAATTTGAATCAACACAACCACCCACAGCCTAATTATTAGCATCATCCCTCTACTATTTTTTAACCAAATCAACAACAACCTATTTAGCTGTTCCCCAACCTTTTCCTCCGACCCCCTAACAACCCCCCTCCTAATACTAACTACCTGACTC	2	0.0116618106960484	0.991604640356582	0.171177951222925	N	N	2.80719211178384	3.33528047801382	2.80719211178384	splitr	18	0.0842105263157893	0.0105263157894737	0	N	0.0894736842105261	Y	N	54817	93473	ENSG00000198786	ENSG00000198886	+	-	MT	MT	14148	12137	coding	coding	MT-ND5	MT-ND4	12337	10760	+	+	0.0842105263157893	14141	10762	+	-	N	-	-	N	SKBR3_13_2_1	2	0	1.6	1	3	2	Y	N	0	0	5	1.4734545719899	0.720171616646748	1.4734545719899	0.720171616646748	2	-	-	0.60524179975777
123769	TAAACAGGTAGTAATAGATATTATCACAAGATGACTGACCAGCAACCACATTTTCATCTTGTATTCAGTAGAAGTTCGGTTCAATTTTCCAAAAAAGAATTTAGCTCTATGGCAGTTGGATAATTTTAAACACCTG|TTCCCTGCTCCTGCTCGCCTCGGTGCGGCACAGCTGGACCATACCCTACAGGTTTCCCACTTCCGCTGCAAACACCTGGGAGCGCATCTCCCCACCGGCGCCCCTCCTCGCCTCGGCGGAGCCCACCCTGGCTACTTGACAGCAG	1	0.748342200413785	0.526775457519482	0.600084425908804	N	Y	3.58999531724489	3.39271690522525	3.39271690522525	splitr	281	1	0	0	N	0.992647058823529	Y	N	124	0	ENSG00000018236	ENSG00000227059	-	+	12	12	41464094	133812681	utr5p	downstream	CNTN1	AC226150.2	41302156	133794898	+	-	0	41302156	41086391	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.653948939253943	0.44700307240143	0.653948939253943	0.44700307240143	1	-	-	0.60524179975777
1129	TACGGAAGACCCACTCCCCGGCGCCGCTCGTGTGGGGCCCAAGTCCTTCTGATCGAGGCCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTTGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCC|GCCCCGCTTTCACGGTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACAGCCCCAGTCAAACTCCCCACCTGGCACTG	1	0.0213238303443881	0.12875022366714	0.0640797573534845	N	N	3.34103362635907	3.72448538129198	3.34103362635907	splitr	7	0.0432098765432098	0	0	N	0	N	N	0	0	ENSG00000141161	ENSG00000162669	-	-	17	1	33516364	91870426	intron	intron	UNC45B	HFM1	33474836	91726323	+	-	0.0432098765432098	33478150	91852979	-	-	Y	1	1	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0.508196721311475	1	2	0.827783467410055	0.45528090707553	0.827783467410055	0.45528090707553	3	0	0	0.60524179975777
94875	AAACCCAGCCCCGCGCTCGTCTTTGGGGCCACCGGTCGCCCCCGCCTCCGGGACCTGCGGGGAGGGCCCGCGAGAGATGGAGACGAGAGATCTGGACTTCTGAACATCTACCGGAAAAGATAAAATGTGCAAGCCCTTCAGAACGCTGGGGAGGTTGGGCTGAACTGCAGTGGGAGAGGAGAAGAGATGCTGGCGTGAAGG|GGAGTCCCCGGCGTGCAGTGGAGCCTCGCTGGGGGAAATGACAGCTTGGACCATGGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAGCTCATTGACACAATTGCCTCGGAGATCGGAGAACTGAAACAGGAGATGGTGCGGACAGATGTCAACCTGGAAAATGGCCTGGAAC	2	0.9603722058164	1	0.626856592055952	N	Y	3.18139447137432	3.32320511986986	3.18139447137432	splitr	380	1	0.005586592178771	0	Y	0.335195530726257	N	Y	23	493	ENSG00000233895	ENSG00000132669	+	-	20	20	19790319	19983101	intron	intron	RP1-122P22.2	RIN2	19738352	19867165	+	+	0	19780391	19870210	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	4	1.19200819307048	1.26650870513738	1.26650870513738	1.19200819307048	4	-	-	0.60524179975777
59930	TTCCGGCGGGCCAAGGTGTTTTTCCGGCATCGAGCCCGGGAATGGACCGTCACAGGCTTGCGGATGATCAGCCCATCTTTGATGAGCTTCCGGATCTGCTGACGGGAGTTGGCATTGGCGATTTCATTGGTCTCATTGGGGTCTAACCAGACCTTCTTCTTGCCA|CAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTACG	8	1	0.599049246383185	0.797890980497385	N	N	3.61530289448208	3.52680574168822	3.52680574168822	splitr	10	0.0900900900900902	0.0900900900900902	0	Y	0.099099099099099	N	N	129759	0	ENSG00000108298	ENSG00000141161	-	+	17	17	37360980	33516364	coding	intron	RPL19	UNC45B	37356536	33474836	+	+	0.0900900900900902	37357511	33478226	-	+	N	-	1	N	SKBR3_13_2_1	7	1	4	2	5	2	N	N	0	1	5	1.16717468904818	0.877450475454658	1.16717468904818	0.877450475454658	1	-	0	0.60524179975777
60313	TGGCAAATAGGAAGAAGCTCAGTATCGGCTCCTCCCACCATAACCCCCACTTCCTCCACTGCCTCCTGGACCATAGTTTCCTCCACCATATGGTCCCCCCATGTTCCTGCTACCACCAAAGTTTCCACTCTTCATTGGACCGTAGTTAGAAGGTTGCTGGTTATAATT|ACCTAAAACAATCTCACAACACCAAATCTCCGCCTCCATCATCACCTCAACCCAAAAAGGCATAATCAAACTTTATTTCCTCTCTTTCTTCTTCCCACTCATCCTAACCCTACTCCTAATCACATAATCTATTCCCCCGAGCAATCTCTAGTACAATATACACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATA	1	0.0152647093967595	0.311204357582937	0.306030290211129	N	N	3.78465029545248	2.99888520932757	2.99888520932757	splitr	3	0.00595238095238093	0	0	N	0.0416666666666666	N	N	13407	31	ENSG00000122566	ENSG00000132570	-	+	7	5	26241149	134343649	coding	intron	HNRNPA2B1	PCBD2	26229547	134240596	-	+	0.00595238095238093	26232958	134260464	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	1	0.60524179975777
119487	GTGGGACTTTTCCATCAAACATGGGCGACTGCACCATGATGGCCATCCGGAGCGAGTCCTTGGGGATGCTCTCGCTGCATTTCTTGCAAGAGGCGCGCCCGCTCTTGGCGTACTCGACTCGATAGAGCTTATCCGAAGACTCCGCCATCCTCCCCTAGCTG|CCGCCCCCCCCCCACCCCCCCCCCCTACCCACGC	1	0.576215499347084	0.261533274614987	0.233421673643755	N	N	3.50529022639353	1.88626143134628	1.88626143134628	splitr	5	0.147058823529412	0.147058823529412	0	N	0.147058823529412	N	N	5547	0	ENSG00000143799	ENSG00000230876	-	+	1	2	226595780	33151760	utr5p	intron	PARP1	AL121656.4	224102741	33050510	-	+	0	226595643	33141321	+	+	Y	-	1	N	SKBR3_13_2_1	6	1	5	4	2	1	N	N	0	1	2	0.728449451320848	0.413891733705027	0.728449451320848	0.413891733705027	2	-	0	0.60524179975777
140135	GGATTTGTTGACATTGTTAAAGTGCTCCTTAATGAAGGTGCAAATATAGAAGATCATAATGAAAATGGACATACTCCCTTAATGGAAGCAGCCAGTGCAGGTCATGTGGAAGTTGCAAGAGTTCTTTTAGATCATGGTGCAGGCATCAACACTCATTCTAATGAATTCAAAGAAAGTGCTCTAACACTTGCTTGCTACAAAG|ACCTTCGCCCTTTGCCTGATGTCGCCATGACAGGCACATGTACCCGGGAGTGCAGTGAGTTTGGCCACTCTGACACATGCTGGATGCCTGGCCAGTCATCTCCCAGCCGCCGGACCAAGAGCAGCGCCCTCAAACTCTCCACCTTCGTGCCTT	5	1	0.934930712933681	0.628500870688971	N	N	3.39809933120991	3.53039946453785	3.39809933120991	splitr	2	0	0	0	N	0	N	Y	2355	855	ENSG00000131503	ENSG00000156453	+	-	5	5	140099052	141258811	coding	coding	ANKHD1	PCDH1	139781399	141232938	+	-	0	139825560	141234001	+	+	N	-	-	Y	SKBR3_13_2_1	1	0	1	1	0	1	Y	N	0	0	11	1.5396772493827	1.31617571318199	1.5396772493827	1.31617571318199	4	-	-	0.60524179975777
30404	AATAGCTGTTTATTTGGCAGTGTGCCGGAAAGGGTGATGGACTTAGCATTCACAGACGACACCACACACCACTGTCACGAGGGAAGAAAGAGCGCGGGCAAGCCAGCCTGGAGCCCCGAGGAGGCGGCCTCCTCTTC|GTCTGATCCGTCCTAATCACAGCAGTCTTACTTCT	1	0.290467481002461	0.254583648908217	0.223418152789081	N	N	3.30016202126533	3.65719253292414	3.30016202126533	splitr	7	0	0	0	N	0	N	N	37145	0	ENSG00000149925	ENSG00000237973	-	-	16	1	30081741	567996	utr3p	intron	ALDOA	RP5-857K21.6	30064444	566454	+	+	0	30081590	567006	-	-	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	2	2	N	N	0	0	2	0.645671104579843	0.811227798061854	0.811227798061854	0.645671104579843	2	-	0	0.60524179975777
36199	TCAATTTCGGGTGGCTGAAGGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCACGTAACTAGTTAGCATGCCAGAGTCTCGTTGGTTATTGGAATTAACCAGACAAATCACTCCACCAACTAAGGCCATGCACCACCACCCA|CAATCACAAGAAGATTCCCACCCCTGCCTCCCATGCCTGGTCCCAAGACAGTGAGACAGTCTGGAAAGTGATGTCAGAATAGCTTCCA	1	1	0.163782765099475	0.102428735043176	N	N	3.05421564420587	3.36873402280666	3.05421564420587	splitr	10	0	0	0.5	N	0.0568181818181818	N	N	1	34840	ENSG00000256642	ENSG00000135480	-	-	16	12	33962503	52662180	upstream	utr3p	NCRNA00273	KRT7	33961052	52626954	-	+	1.11022302462516e-16	33963823	52642583	-	-	Y	-	5.52181348842673	N	SKBR3_13_2_1	3	1	2	1	1	1	N	N	1	0	2	0.811227798061854	0.463558741749631	0.811227798061854	0.463558741749631	0	-	2434.5	0.60524179975777
44821	CTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTGGTTGCCCCTCGGTTCCCCACTTCCCCAGTTTCCCCCG|TTACCCCCCACTATTAACCTACTAGGAGAACTCTCTGTGCTAGTAACCACATTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAATCACAGCCCTATACTCCCTCTACATATTTACCACAACACAATGAGGCTCGCTCAGCCACCACATTAACAACATAAAACCCTCATTCACACGAGAAAACACTCTCATGTTCATACACCTATCC	7	1	0.975286075153362	0.574065501587726	N	N	2.9976538004648	3.50848272165904	2.9976538004648	splitr	11	2.22044604925031e-16	0	0	N	0	N	N	83603	31	ENSG00000130600	ENSG00000132570	-	+	11	5	2022700	134343649	intron	intron	H19	PCBD2	2016406	134240596	-	+	2.22044604925031e-16	2019037	134262622	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	2	0	2	2	4	4	N	N	0	0	4	0.769838624691351	1.04300716893667	1.04300716893667	0.769838624691351	2	-	0.5	0.60524179975777
24776	GCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCT|CACACTCATTCTCAACCCCCTGACAAAACATATAGCCTACCCCTTCCTTGTACTATCCCTGTGAGGCATAATTATAACAAGCTCCATCTGCC	1	0.816249229079358	0.447538936456759	0.5	N	N	3.27188321579446	3.2687305733223	3.2687305733223	splitr	5	1.11022302462516e-16	0	0	N	0.0652173913043477	N	N	0	31	ENSG00000162669	ENSG00000132570	+	+	1	5	91870426	134343649	intron	intron	HFM1	PCBD2	91726323	134240596	-	+	1.11022302462516e-16	91853077	134262989	+	+	Y	1	1.2575464834446	N	SKBR3_13_2_1	3	1	2.5	2	2	3	N	N	1	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	0	1	0.60524179975777
74927	ATTAAGGATGCCAACGCCAAGTTGTCCGAGCTGGAGGCCGCCCTGCAGCGGGCCAAGCAGGACATGGCGCGGCAGCTGCGTGAGTACCAGGAGCTGATGAACGTC|AAGCTGGCCCTGGACATCGAGATCGCCACCTACCGCAAGCTGCTGGAGGGCGAGGAGAGCCGGTTGGCTGGAGATGGAGTGGGAGCCGTGAATATCTCTG	10	0.464046737792632	0.756907887707654	0.622141045765802	N	N	3.66951632120446	3.65913638023969	3.65913638023969	splitr	151	0.62	0.67	0	N	0.74	N	Y	64916	34840	ENSG00000170421	ENSG00000135480	+	-	12	12	53298868	52662180	coding	coding	KRT8	KRT7	53290971	52626954	-	+	0.62	53292463	52641961	-	-	N	-	-	Y	SKBR3_13_2_1	35	0	25	15	2	1	Y	N	0	0	2	0.827783467410055	0.620837600557541	0.827783467410055	0.620837600557541	4	-	-	0.60524179975777
132467	TCTGTACAAAATAGCCACCTCTCTAAACAGTGTTAACAGGAAGTAGGCTGACTGCTGGCTTTGGGGGGTCTTGCAGGCCTTCAGAGCAGTCTTAATGCCCAGTGGCTTGCACTCGAGGACAGCTTTGGCCACAGCATCACGGAGAGCCTTGTATTCATCGCCGTACACCAGGTACCTATCCATCTGGCCTGG|TTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTG	1	1	0.254583648908217	0.223418152789081	N	N	3.67952553980864	3.59784511035345	3.59784511035345	splitr	16	0.12	0.12	0	N	0.146666666666667	N	N	10396	0	ENSG00000173821	ENSG00000212932	-	-	17	21	78370086	48111157	coding	upstream	RNF213	RPL23AP4	78234665	48110676	+	+	0.12	78348276	9827012	-	-	Y	-	-	N	SKBR3_13_2_1	1	0.984848484848485	1	1	0	1	N	N	0	0.984848484848485	2	0.827783467410055	0.546337088490636	0.827783467410055	0.546337088490636	3	-	-	0.60524179975777
77622	CCCCGAGCAATCTCAATTACAATATATACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAAAGCCCCCGCACCAATAGGATCCTCCCGAATCAACCCTGACCCCTCTCCTTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAACCACCACCCCATCATACTCTTTCACCCACAGCACCAATCCTACCTCCATCGCTAACCCCACTAAAACACTCACCAAGACCTCAACCCCTGACCCCCATGCCTCAGGATACTCCTCAATAGCCATCGCTGTAGTATATCCAAAGACA|ACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCATATCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAACCCACCCCATTCCT	1	0.00350198372582724	0.447538936456759	0.5	N	N	3.57336771439491	3.16633430462754	3.16633430462754	splitr	8	0.0571428571428574	0.0571428571428574	0	N	0.0571428571428574	Y	N	19641	24767	ENSG00000198695	ENSG00000198763	-	-	MT	MT	14673	5511	coding	coding	MT-ND6	MT-ND2	14149	4470	-	+	0.0571428571428574	14479	5307	+	-	N	-	-	N	SKBR3_13_2_1	4	0	3.2	2	5	2	N	N	0	0	5	1.25823087046328	1.5479550840568	1.5479550840568	1.25823087046328	2	-	-	0.60524179975777
109470	GGCTACGGCGGCGTCCTGACCGCGTCCGACGGGCTGCTGGCGGGCAACGAGAAGCTAACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGCGGCCAACGGCGAGCTAGAGATTCTTGGTGCCACCATTGAGAACTCCAGGATTGTCCTGCAGATCGACAA|CGCCCCCCCCCCCCCCCCCCCGCCCCAGCGAATTGTTGCTATTGTTGTTTTGTA	1	1	0.311204357582937	0.306030290211129	N	N	3.72146071989581	2.52482125743158	2.52482125743158	splitr	5	0.0740740740740742	0.0740740740740742	0	N	0.12962962962963	N	N	58670	8	ENSG00000171345	ENSG00000166582	+	-	17	17	39684560	16256813	coding	upstream	KRT19	CENPV	39679869	16245848	-	-	0	39681476	16258079	-	-	N	-	-	Y	SKBR3_13_2_1	5	0.48	5	5	2	1	N	N	0	0.48	2	0.554614923164737	0.413891733705027	0.554614923164737	0.413891733705027	1	-	-	0.60524179975777
131358	TGAAAAGCCTTTGTTACCTGAGGCTCATTCACTGAAAAAAAAAAAAAAAA|ACACACAACTAAACAAAATCCACACAACAAACATCTGAGAATCTGGACACTTCACATCAGTGTTTTGAAGTGTTTCATTAATATCTTAAGACAAGTGTATCAAAACCTTGGCATGATTTAATTTCAAGTCGCCAATTTTGTTTTTACTAACATCAGAAAGTTATGGCTACACTGCCAACGCCGGGTCTGCTTAATTTGACTTAAGAGTTTAATATGACTTAAACATTAAAAGC	1	1	1	0.935920242646516	N	Y	3.15046688454107	2.81297576535263	2.81297576535263	splitr	26	0.46	0.46	0	N	0.5	N	N	98	4294	ENSG00000092208	ENSG00000215301	+	+	14	X	39606177	41223725	coding	utr3p	SIP1	DDX3X	39583427	41192651	+	+	0.46	39601243	41209154	+	+	Y	-	-	N	SKBR3_13_2_1	36	0	19	2	2	1	N	N	0	0	2	0.422169568379128	0.827783467410055	0.827783467410055	0.422169568379128	2	-	-	0.60524179975777
22300	GCTGCTGCGGCCGCAGCCATGAGTATGCTCAGGCTTCAGAAGAGGCTCGCCTCTAGTGTCCTCCGCTGTGGCAAGAAGAAGGTCTGGTTAGACCCCAATGAGACCAATGAAATCGCCAATGCCAACTCCCGTCAGCAGATCCGGAAGCTCATCAAAGATGGGCTGATCATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAGCGGAAGGGTACA|GCCAATGCCAACTCCCATCAGTGGATCCGAAAGCTGATCAAAGATGGGCTGATCATCCACAAGCCTGTGACTGTCCATTCCTGGCTTGATACCGGAAAACACCTTGGCCTGCCAGAAGGGCAGGCACATGGGCGTAGTTAAGTGAAAGGCTACAGCCAATGCCCGAATGCCAGAGAA	5	0.0628954389696596	0.16516770167658	0.371499129311029	N	N	3.23168330567983	3.51104337473878	3.23168330567983	splitr	0	0.0734463276836158	0.0508474576271186	0	N	0.129943502824859	N	N	129759	0	ENSG00000108298	ENSG00000236762	+	+	17	10	37360980	122893237	coding	intron	RPL19	RP11-159H3.1	37356536	122892604	+	-	0.0734463276836158	37359258	122893141	+	+	Y	-	1	N	SKBR3_13_2_1	2	0	1.5	1	1	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
65751	GCTTTGGGCCGCGGAACACTCAGCTAAGAGCATCGAGGGGGCGCCAAGAGGCAAGGGGCGGGGACGGGCAGTGGCTCGCCTCATGGCGGACTGCCCGCCCGCTCCCAAGATCCAACTAGGAGCTTTTTAACTGCAGCAACTTTAATATACGCTATTGGAG|GGCAAGTCTGGTGCCAGCAGCCGTGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATCTTGGGAGCGGGTGGGCTAGCGAGCCACAGCCCGTCCCTGCTTCTTGCCTCTCGGTGCCCCCTGGATGCTCTTAGCTGAGTGTCCTGTGGCCCGAAGCACTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAGCCGCCTGGATACTGCAGCTTGGAATAATGGAATAGGACCACAGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCATATTGCACCGCTAGAGG	4	1.04657118581733e-14	0.883957023659923	0.858648013974686	N	N	3.3755202409218	3.60632674564779	3.3755202409218	splitr	7	0.0437499999999998	0	0.25	N	0	N	N	1	1	ENSG00000256642	ENSG00000163046	-	+	16	2	33962503	133015542	upstream	intron	NCRNA00273	ANKRD30BL	33961052	132905164	-	-	0.0437499999999998	33963134	133013167	-	+	Y	-	0.81549815498155	N	SKBR3_13_2_1	2	1	1.25	1	1	3	N	N	1	1	4	0.653948939253943	0.480114411097832	0.653948939253943	0.480114411097832	3	-	0	0.60524179975777
39748	CGTACGCCACATTTCCCGCGCCCCACCGCGGGGCGGGGATTCGGCGCTGGGCTCTTCCCTGTTCACTCGCCATTACTGAGGGAATCCTGGTTAGTTTCTTTTCCTCCGCTGACAAATATGCTTAAATTCAGCGGGTCGCCACGTCTGATCTGAGGTCGCG|TAACTAGTTGGCATGCCAGAGTCTCGTTCGTTATTGGAATTAGCCAGACAAATCACTCCAGCAACTAAGGCCATGCACCACCACCCGTGGAATCGAGAAAGAGCTATCAATCTGTCAATCCTGTCCGTGTCCAGGCTGGGTGAGTTTTCCCATGTTGAGTCAA	3	0.329368088483112	0.130715914556096	0.197936974829114	N	N	3.69425483698818	3.90657048781565	3.69425483698818	splitr	7	2.22044604925031e-16	0	0.5	N	0.075	N	N	0	1	ENSG00000141161	ENSG00000163046	+	-	17	2	33516364	133015542	intron	intron	UNC45B	ANKRD30BL	33474836	132905164	+	-	2.22044604925031e-16	33478275	133012372	+	-	Y	1	0.81549815498155	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	1	2	0.827783467410055	0.45528090707553	0.827783467410055	0.45528090707553	1	0	0	0.60524179975777
130932	AAAAGCAGTACAGGCGCTTGGCAGGGTTTTCAGACTTCTTGTTAGCATTACAGAGCCACTGCACAGCAGAAATGCTGATGCAACCATCAAATGTGCCTGGCTTGAATGGGATGCCCTGGCCCATATCCCCCAGCAGCAGGTCTCC|AAGGTAAACAGCCTCTGGCATGTTAGAACAATGTAGGTAAGGGAAATCAGCAAGCTGGATCAGTAAGT	1	0.874287491456395	0.12875022366714	0.0640797573534845	N	N	3.15575602456989	3.66592259835483	3.15575602456989	splitr	40	0.11764705882353	0.11764705882353	0	N	0.11764705882353	N	N	2380	0	ENSG00000071462	ENSG00000251948	-	+	7	19	73119491	24184165	coding	downstream	WBSCR22	AC092279.1	73097355	24184075	+	-	0	73101355	24183701	-	+	Y	-	-	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	0	1	2	0.422169568379128	0.430447403053228	0.430447403053228	0.422169568379128	3	-	-	0.60524179975777
141049	GTAGAATTAGAATTGTGAAGATGATAAGTGTAGAGGGAAGGTTAATAGTTGATATTGCTAGTGTGGCGCTTCCAATTAGGTGCATGAGTAGGTGG|ATGGCAAGCATGTGGTCTTTGGCAAGGTGAAAGAAGGCATGAATATTGCAGAGGCCATGGAGCGCTTTGGGTCCAGGAATGGCAAGACCAGCAAGAAGATCACCATTGCTGACTGTGGATAAGTCT	1	0.652261869951164	0.612610548302747	0.693969709788871	N	N	3.64759957832565	3.30335451653084	3.30335451653084	splitr	3	0.0315789473684212	0	0	N	0.0736842105263158	N	N	3	0	ENSG00000230021	ENSG00000213592	-	+	1	11	659930	57486002	intron	intron	RP5-857K21.4	AP000662.9	536816	57485516	-	-	0.0315789473684212	569576	57485639	-	+	Y	0.828962371721779	1	N	SKBR3_13_2_1	100	0	87	74	2	1	N	N	0	0	2	0.827783467410055	0.720171616646748	0.827783467410055	0.720171616646748	1	0	0	0.60524179975777
138701	CAGGGCCTTGGCCACCAGCTGCTCCCGGTCCTCAGCCTTCC|TAATGACCTCCGGCCTAGCCATGTGATTTCACTTCCACTCCACAACCCTCCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGCCACCACACACCACCTG	1	0.235457505727009	0.311204357582937	0.306030290211129	N	N	3.24165267149066	3.74913061111987	3.24165267149066	splitr	11	0.24390243902439	0.195121951219512	0	N	0.390243902439024	N	N	36259	3	ENSG00000100867	ENSG00000230021	-	-	14	1	24114848	659930	coding	intron	DHRS2	RP5-857K21.4	24099378	536816	+	-	0.24390243902439	24108531	569832	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	3	1	N	N	0	0	3	0.45528090707553	0.943673152847462	0.943673152847462	0.45528090707553	2	-	0	0.60524179975777
111116	GACCCATCTTCAACTGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCT|GCGGCCGCCCCTCCCGCCACCTGCCGCCTCCCGCCGCCGCCGCCGCCCGCCGCCGCCGCCGCCGCCGCCGCCCGCCGCCCGCCGCCGCCGCCGCCCGCCGCCCGCCGCCC	10	0.420607898549651	0.0613248653926715	0.156462659625875	N	N	3.47911741325579	2.49448807960213	2.49448807960213	splitr	1	0	0	0	N	0	N	N	0	25	ENSG00000251948	ENSG00000178665	+	+	19	7	24184165	56009918	intron	intron	AC092279.1	ZNF713	24184075	55955169	-	+	0	24184150	55955627	+	+	Y	1	0.70417702047095	N	SKBR3_13_2_1	48	1	31	4	4	1	N	N	1	0.706666666666667	4	0.596004096535239	0.620837600557541	0.620837600557541	0.596004096535239	1	0	0	0.60524179975777
137358	CATCATTACCAAATCCATTATAGCCATCCCCACTGCCACCATATCCACCACCACCATGGCTGCCACCAAAGCCACCACGACCACTGAAGTTTCCTCCACGACCGAAGTTGTCATTCCCACCGAAACCACCTCCACGACCACCACCAAAGTTTCCAGAACCACTTCGACCTCTTTGGCTGGATGAAGCACTAGCCATCTCTTGCTTTGACAGGGCTTTTCT|ACACTATTAAAATTTACCACAACCACCACCCCATCATACTCTTTCACCCATAACACTAATCCTACTTCCATCACCAACCCCACTAAAACACTTACCAAGACCTCAACCCCTGACCCCCATGCCTCAGGATACTCCTCAATAGCCACCGCTGTAGTATATCCAAAAACAACCATCATTCCCCCCAAATAAATTAAAAAAACCAT	1	2.47502492528997e-05	0.704121951840997	0.776581847210919	N	N	3.42936294528359	2.82714019097532	2.82714019097532	splitr	3	0.00492610837438423	0	0	N	0	N	N	0	0	ENSG00000197332	ENSG00000249119	+	+	19	5	11797382	134260334	intron	intron	ZNF833P	MTND6P4	11750591	134259813	+	+	0.00492610837438423	11777314	134260174	+	+	Y	1	1	N	SKBR3_13_2_1	82	1	51	20	2	1	N	N	1	0	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	2	0	0	0.60524179975777
136728	CCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTCGGTCACGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTCGGCCATCTTGGCTCCTCCT|CACTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAGTGTGGTGAAGGCACCTATTCCTTGGGCAGTGGCATCAAATTTGATGAATGGGATGAATTGCCGGCAGGATTTTCTAACATCGCAACATT	1	0.617227499574348	0.741226900104651	0.805084147116216	N	Y	3.67017866861376	3.53974633573272	3.53974633573272	splitr	244	0.97938144329897	0.0515463917525774	0	N	0.969072164948454	N	N	1712	384	ENSG00000132912	ENSG00000164659	+	-	5	7	150138671	86689015	utr5p	coding	DCTN4	KIAA1324L	150088002	86506222	-	-	0	150122399	86594221	-	+	Y	-	-	N	SKBR3_13_2_1	50	1	42.6666666666667	31	3	1	N	N	1	0	3	0.745005120669049	1.24167520111508	1.24167520111508	0.745005120669049	1	-	-	0.60524179975777
11587	TGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCC|AGCACCCCCTCTACCCCCTCTAGAGCCCACTGTAAAGCTAACTTAGCATTAACCTTTTAAGTTAAAGATTAAGAGAACCAACACCTCTTTACAGTGAAATGCCCCAACTAAATACTACCGTATGACCCACCATAATTACCCCCATACTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAAATACAAATTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTC	7	0.0102415911289966	0.438615249737472	0.753232035611871	N	N	3.48593413659447	3.02023289075291	3.02023289075291	splitr	8	1.11022302462516e-16	0	0	N	0	N	N	83603	3	ENSG00000130600	ENSG00000230021	-	-	11	1	2022700	659930	intron	intron	H19	RP5-857K21.4	2016406	536816	-	-	1.11022302462516e-16	2018981	568817	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	2	7	N	N	0	0	2	0.579448427187038	0.827783467410055	0.827783467410055	0.579448427187038	2	-	0	0.60524179975777
71764	GCTCCAAAGCGCGCCTCCGTTTCTGCCAGTGTGTCTTCCAAGGCAGCTTTCATGCTCAGCTGTGACTGCAGCTCA|TTCTCAACCCCCTGACAAAACATATAGCCTACCCCTTCCTTGTACTATCCCTGTGAGGCATAATTATAACAAGCTCCATCTGCCTGCGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCC	2	0.899949484282616	0.572228613671423	0.790699370883283	N	N	3.39015625214551	3.25256697878875	3.25256697878875	splitr	19	0.0533333333333333	0.0133333333333333	0	N	0.16	N	N	58670	31	ENSG00000171345	ENSG00000132570	-	+	17	5	39684560	134343649	coding	intron	KRT19	PCBD2	39679869	134240596	-	+	0.0533333333333333	39680419	134262981	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	3	0	2.5	2	2	2	N	N	0	0	2	0.596004096535239	0.76156079001725	0.76156079001725	0.596004096535239	2	-	1	0.60524179975777
30485	TGAGTGTAAATGCATTTGGTTATTTCTGGTATCGGTGGCCACTTGGATGGATTTTTTTACATTCTGTTCCCCAGTTACAGGAAGGAGTCCCTTTGGTGTGTGAATATGTGTGCCTGTAGAGGGTGGGGCAGGGTGGGGTGGGGATGGAAATGTGTGGCATGCACATGAGTTGAAATTCTTTTATGCATTTTTTTGAAG|AAAAAAAAAAAAAAACAACTCATTGTATTCAAATGCTTTTCCAGGA	3	1	0.628662002269596	0.887412098001787	N	N	3.11084961624904	2.68007606534769	2.68007606534769	splitr	21	0.41304347826087	0.41304347826087	0	N	0.456521739130435	N	N	6548	0	ENSG00000113719	ENSG00000213147	+	+	5	10	172379688	135516024	utr3p	upstream	ERGIC1	XXyac-YRM2136_A.1	172261278	135515571	+	+	0.41304347826087	172379523	79505283	+	+	Y	-	-	N	SKBR3_13_2_1	15	0	8	4	3	1	N	N	0	0	3	0.836061302084155	0.413891733705027	0.836061302084155	0.413891733705027	2	-	-	0.60524179975777
126958	GTATTTGTCAATTTTCTTCTCCACGTTCTTCTCGGCCTGTTTCCGTAGCCTCATGAGCTGTTTCTTCTTCCGGTAGTGGATCTTGGCTT|TCTCTTTCTTCTTCCCACTCATCCTAACCCTACTCCTAATCACATAATCTATTCCCCCGAGCAATCTCTAGTACAATATACACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAAA	1	0.865761430621063	0.390564714822603	0.421349522516249	N	N	3.50272957331379	2.80719211178384	2.80719211178384	splitr	14	0	0	0	N	0	N	N	0	31	ENSG00000236552	ENSG00000132570	-	+	10	5	98510675	134343649	intron	intron	RPL13AP5	PCBD2	98510045	134240596	+	+	0	98510532	134260384	-	+	Y	1	1.2575464834446	N	SKBR3_13_2_1	20	0	19	18	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	0	1	0.60524179975777
138755	GATGTTCCTGCCAACCTGAATGCAGAAGTCCCCACGAATGGTGCCTGGCTTTGAATCTGCTGGATTGGTCT|CCCCAAGCACTCTGACTGCCTGGTATGTGCCTCTGCTTTGTGCCCAATGTGCTCTACCCCCCAGGATGCAAGGGGTGGGCACCCTGCCTGGTACTGCCCTATTGCCCCTGGCACACCAGGGCAAAACAGCACAGTGAAAGCCAGCCACCTGTCCCCCCAGGCCTGCCTCCACTTCAACCACAGTGGCATCTGTGAGCTGCACTGCCCAGCCCTGGTCACCTACAACACAGACACGTTTGAGTCCATGCCCAATCCCGAGGGCCGGTATACATTCGGCGCCAGCTGTGTGACTGCCTG	1	0.0016009432705195	0.800133926999915	0.844771979185218	N	N	3.52101274054962	3.39120290228453	3.39120290228453	splitr	9	0	0	0	N	0	N	N	5772	74211	ENSG00000011052	ENSG00000141736	-	-	17	17	49249108	37884915	coding	coding	NME2	ERBB2	49230920	37844393	+	+	0	49247347	37866433	-	-	N	-	0.415165827357684	Y	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.60428193120934	0.827783467410055	0.827783467410055	0.60428193120934	1	-	1409	0.60524179975777
24784	AACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACAGCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGA|GCGCTTGGCGCCAGAAGCGAGAGCCCCTCAGGGCTCGCCCCCCCGCCTCACCGGGTCAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGGCCCGCAGGGCCGGCA	18	0.140027182051719	0.821466222123084	0.908418360403879	N	N	3.23636353146184	3.15782216410967	3.15782216410967	splitr	5	1.11022302462516e-16	0	0	N	0.972972972972973	N	N	0	0	ENSG00000162669	ENSG00000226958	+	+	1	X	91870426	108297792	intron	upstream	HFM1	RN28S1	91726323	108297361	-	-	1.11022302462516e-16	91853148	108297823	+	+	Y	1	-	N	SKBR3_13_2_1	6	1	1.86516853932584	1	105	1	N	N	1	0.808219178082192	178	0.711893781972647	1.20856386241868	1.20856386241868	0.711893781972647	1	0	-	0.60524179975777
115250	TTACCCCCCACTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAGTCACAGCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAAACCCTCATTCACACGAGAAAACACCCTCATGTTCATACACCTATCCCCCATTCT|CCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTC	1	0.100211099505393	0.20555784636729	0.155228020814782	N	N	3.29806537650201	3.53871326596283	3.29806537650201	splitr	12	0.0785714285714286	0.0785714285714286	0	N	0.0857142857142857	Y	N	93473	58402	ENSG00000198886	ENSG00000198712	+	-	MT	MT	12137	8269	coding	coding	MT-ND4	MT-CO2	10760	7586	+	+	0.0785714285714286	12093	7816	+	-	N	1.32347127600328	-	N	SKBR3_13_2_1	4	0	3	1	2	2	Y	N	0	0	3	1.24167520111508	0.877450475454658	1.24167520111508	0.877450475454658	2	3350.33333333333	-	0.60524179975777
13333	GTCAGCCAGGAACTTCTTGTGGGCCTTGTCTGCCTTCAGCTTGTGGTTGTGTTCCATGAGAATCTGCT|TGTTTTTGAACACATTCCCCTTCACCTTCAGGTACAGGCTGTGATACATGTAGCAATCAATCTTCTTAGATTCACAGTATCTTCTGAGCAGCAGGCGCAGAATCCTCATTCTCCTCATCCACGTGATCTTCTCTGGCATTCGGGCATTGGCT	3	0.216438649350253	0.856088358400918	0.357980465865342	N	Y	3.49011984883652	3.50744965188915	3.49011984883652	splitr	220	0.808823529411765	0.823529411764706	0.666666666666667	N	0.838235294117647	N	N	0	0	ENSG00000236827	ENSG00000241877	-	+	8	4	11125374	179208439	intron	intron	CTC-493P15.3	RP11-84H6.1	11105135	179207849	-	+	0.838235294117647	11113928	179208252	-	+	Y	1	1	N	SKBR3_13_2_1	15	0	10	7	3	1	N	N	0	0	3	0.463558741749631	1.00989583024027	1.00989583024027	0.463558741749631	1	0	0	0.60524179975777
93887	GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG|GCCAGGCGCTGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCAGGGTGGTTGGATCACCTGAGATCAGGAGTTCGAGACCAGCCTGACCAACATGGCGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCATGCCTGTAATCGCAGCTACTTGGCTAGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGCAACAAAAGTGAAAGTTTGTCTCAAAAAAAAAAAAAAAAAAAGTGA	1	1.50660253042801e-10	0.447538936456759	0.5	N	Y	2.68007606534769	3.6035982586987	2.68007606534769	splitr	618	0.905844155844156	0.711038961038961	0.5	N	0.701298701298701	N	N	17	129	ENSG00000134757	ENSG00000137135	+	-	18	9	29058665	35675863	utr3p	utr5p	DSG3	C9orf100	29027758	35658872	+	-	0.866883116883117	29056948	35675289	+	+	Y	-	-	N	SKBR3_13_2_1	135	0.99009900990099	109.5	84	2	1	N	N	0.99009900990099	0.980099502487562	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
129606	AGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAA|AAGGAAAAATTAAACTAAAAAAAAAAAAAATGACTGTGACCTAGTCACCCTCTACT	10	0.78151614965305	0.873090904936312	0.980494826470013	N	Y	3.1677915299205	2.57035016036838	2.57035016036838	splitr	260	0.785714285714286	0.785714285714286	0	N	0.839285714285714	N	N	14698	31	ENSG00000187514	ENSG00000232938	+	+	2	17	232578251	81188573	utr3p	upstream	PTMA	AC139099.1	232571605	81174666	+	+	0.785714285714286	232577571	74647704	+	+	Y	-	-	N	SKBR3_13_2_1	27	0.24390243902439	15	3	2	2	N	N	0.24390243902439	0	2	0.827783467410055	0.45528090707553	0.827783467410055	0.45528090707553	2	-	-	0.60524179975777
136831	GAAGAAGGAAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGA|CAAGAAACGCAAAGAGGAGGAGGAGGCAGAGGACAAGGAGGATGATGAGGACAAAGATGAGGATGAGGAGGATGAGGAGGACAAGGAGGAAGATGAGGAGGAAGATGTCCCCGGCCAGGCCAAGGACGAGCTGTAGAGAGGCCTGCCTCCAGGGCTGGACTGAGGCCTGAGCGCTCCTGCC	3	1	0.14682641010247	0.233389834398722	N	N	2.18533368467738	2.63668784986417	2.18533368467738	splitr	16	0.108843537414966	0.108843537414966	0	N	0.115646258503401	N	N	14698	9938	ENSG00000187514	ENSG00000179218	+	-	2	19	232578251	13055304	coding	coding	PTMA	CALR	232571605	13049414	+	+	0.108843537414966	232576685	13054592	+	-	Y	-	-	N	SKBR3_13_2_1	9	0.414414414414414	4.66666666666667	2	3	1	Y	N	0.131578947368421	0.414414414414414	3	0.943673152847462	1.24167520111508	1.24167520111508	0.943673152847462	1	-	-	0.60524179975777
108848	ATCATCCACAACCTTAACAATGAACAAGATATTCGAAAAATAGGAGGACTACTCAAAACCATACCTCTCACTTCAACCTCCCTCACCATTGGCAGCCTAGCATTAGCAGGAATACCTTTCCTCACAGGTTTCTACTCCAAAGACCACATCATCGAAACCGCAAACATATCATACACAAACGCCTGAGCCCTATCTATTACTCTCATCGCTACCTCCCTGACAAGCGCCTATAGCACTCGAATAATTCTTCTCACCCTAACA|CATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCATAT	1	8.30279108905066e-05	0.321839855309698	0.321669634186996	N	N	3.54400240599166	3.25828027434064	3.25828027434064	splitr	0	0	0	0	N	0.0317460317460319	Y	N	54817	24767	ENSG00000198786	ENSG00000198763	+	-	MT	MT	14148	5511	coding	coding	MT-ND5	MT-ND2	12337	4470	+	+	0	13632	5203	+	-	N	-	-	N	SKBR3_13_2_1	4	0	4	4	2	3	N	N	0	0	2	0.827783467410055	0.513225749794234	0.827783467410055	0.513225749794234	1	-	-	0.60524179975777
105458	GCTAGGGTGCTATTAGTGTATAGAAATGCTAGTCTTTTTTTTTTTTTTTT|TCCAATAAAAAGACCATTAACTTAAAGTGGTGTTAAATGCTTTGTAAAGCTGAGATCTAAATGGGGACAAGGCAGGTGGAGGGGAGGCCAGTGTACATGTAAATGCCCACAGCCCAGCATTGGGTTTCCCTCCCAAGGCCCCAGCACCAACCTCTGAGCC	5	0.806569424440778	0.513673612676348	0.837356552490703	N	N	2.70368822540568	3.44768596531277	2.70368822540568	splitr	27	0.5	0.5	0.5	N	0.54	N	N	51	9025	ENSG00000178184	ENSG00000198668	-	-	18	14	78005429	90874617	downstream	utr3p	PARD6G	CALM1	77915115	90863327	-	+	0.5	25972380	90871929	-	-	Y	-	2.67854035016538	N	SKBR3_13_2_1	8	1	6.5	5	2	1	N	N	1	0	2	0.430447403053228	0.827783467410055	0.827783467410055	0.430447403053228	1	-	89.5	0.60524179975777
141247	CCGCGCTGCTGACCGGCCGGGCGCCGTAGCTGGGCGCCTGGACAGAGCCCAGGGACCGGTAGTTGGTGGAGAAGGTGGAGCGAGTGGTGAAGCTCATGCTGTCCGGGGAGAGAGAAAGGACAGGACTCA|GGCATGCTAACTAGTTACGTGACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCCTTCAGCCACCCGAAATTGAG	1	0.961109308855893	0.899266171301115	0.897571427984624	N	N	3.44296588673741	3.684245618384	3.44296588673741	splitr	0	0.0337078651685395	0.0337078651685395	0.25	N	0.0898876404494382	N	N	31732	1	ENSG00000111057	ENSG00000256642	-	-	12	16	53346684	33962503	utr5p	upstream	KRT18	NCRNA00273	53342655	33961052	+	-	0.0337078651685395	53342926	33963893	-	-	Y	-	-	N	SKBR3_13_2_1	51	1	17.25	3	4	2	N	N	0	1	4	0.852616971432356	0.769838624691351	0.852616971432356	0.769838624691351	2	-	-	0.60524179975777
117222	CGCTCCTGTTTGGCTTTCTGCTCCCGGGACCTTCTGTCTCCAATCACAGACATGGCCGTCTCCAGATTGGAACTCTGGATCTCCTTCTCCT|ATCTCTCCCAGTCCTAGCCGCTGGCATCACTATACTACTAACAGACCGTAA	1	0.0125081820089706	0.254583648908217	0.223418152789081	N	N	3.53354275944019	3.38974567699157	3.38974567699157	splitr	8	1.11022302462516e-16	1.11022302462516e-16	0	N	1.11022302462516e-16	N	N	6626	0	ENSG00000140264	ENSG00000237973	-	-	15	1	44094787	567996	utr3p	intron	SERF2	RP5-857K21.6	44069285	566454	+	+	1.11022302462516e-16	44092948	567044	-	-	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.76156079001725	0.827783467410055	0.76156079001725	2	-	0	0.60524179975777
133603	GAGGGTGTGGGCAGGTCCCTGGAGCCGGGGGGGGGGGGGGGGGGGGGGGGGGGCAGGA|GGCATTGCTGATGATCTTGAGGCTGTTGTCATACTTCTCATGGTTCACACCCATGACGAACATGGGGGCATCAGCAGAGGGGGCAGAGATGATGACCCTTTTGGCTCCCCCCTG	1	0.275895398278714	0.704121951840997	0.776581847210919	N	N	1.86710509631515	3.50632329616342	1.86710509631515	splitr	6	0.103448275862069	0.103448275862069	0	N	0.327586206896552	N	N	6	62936	ENSG00000163884	ENSG00000111640	+	+	3	12	126076285	6647537	utr3p	coding	KLF15	GAPDH	126061478	6643093	-	+	0.103448275862069	126061991	6646481	-	+	Y	-	-	N	SKBR3_13_2_1	8	0.54	4.5	1	1	1	N	N	0.54	0	2	0.413891733705027	0.827783467410055	0.827783467410055	0.413891733705027	1	-	-	0.60524179975777
94360	GCTTGTTTTTGAACACATTCCCCTTCACCTTCAG|GTACAGCCAATGCCCGAATGCCAGAGAAGGTCACATGGATGAGGAGAATGACGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAA	21	0.0400291925983081	0.761851561808532	0.610786410161189	N	N	3.23643935053857	3.59528445727371	3.23643935053857	splitr	7	0.0294117647058824	0	0	N	0.0294117647058824	N	N	0	0	ENSG00000229168	ENSG00000218227	-	-	X	5	44508965	177483195	intron	intron	RP11-377B2.2	RP11-889L3.1	44508375	177482605	+	+	0.0294117647058824	44508747	177482852	-	-	Y	1	1	N	SKBR3_13_2_1	8	0	6	4	2	1	N	N	0	0	2	0.438725237727329	0.703615947298547	0.703615947298547	0.438725237727329	3	0	0	0.60524179975777
106149	CTCATCTGATCGACAAAGGGATGCTGACATCCACCACAGAGGACGAGTAGGGGCCACCCAGGGCCAGGAGAACAGGAACAGAACTGAGCAGGGGCAGGTCTCCAAGGCAAGCCCAGCTGGTGTGACTTAGACAATGACGAGGCTTCAAC|CCCCTTTTTTTTTTTTTTTTTTTTTGAGACTGAGTTTCACTCTTGTGG	1	0.276972719640074	0.899266171301115	0.897571427984624	N	N	3.75847748231474	2.30505704107967	2.30505704107967	splitr	27	0.354166666666667	0.354166666666667	0	N	0.458333333333334	N	N	1134	30	ENSG00000101290	ENSG00000223396	+	+	20	1	5178533	201499602	utr3p	intron	CDS2	RPS10P7	5107432	201487831	+	+	0.354166666666667	5170979	201489059	+	+	Y	-	-	N	SKBR3_13_2_1	13	0.60377358490566	9.33333333333333	6	3	1	N	N	0	0.60377358490566	3	0.90228397947696	0.438725237727329	0.90228397947696	0.438725237727329	1	-	-	0.60524179975777
115823	CCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTACGCCT|AACTAAAAATATTAAACACAAACTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTA	1	1	0.899266171301115	0.897571427984624	N	Y	3.04946506040697	2.78124056567793	2.78124056567793	splitr	248	1	0	0	Y	0.0869565217391306	N	N	24767	3466	ENSG00000198763	ENSG00000228253	+	-	MT	MT	5511	8572	coding	coding	MT-ND2	J01415.25	4470	8366	+	+	0	5356	8439	+	-	N	0.972511861018914	-	N	SKBR3_13_2_1	5	0	3.5	2	2	1	N	N	0	0	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	2	3043.5	-	0.60524179975777
108450	CAGAGAGAGACAGAGAGAGAGCGAGCGAGCGCGCGGCAGCCGCGGGGCGAGGGCCTTTGCTGCTCTGCCGGGGCCTGCTGACTGAAAGGAATTTGTGTTTTTGCTTTTTTTCCAAAAAGATCTCCAGCTCCACACATGTTTCCACTTAATACCAGAGACCCCCC|CCCCCTTCCCCTCCCCCTTCCCCTCCCCCTCTCCCTCTCCCGCTTTCCAC	4	0.606132694473333	0.465528157851362	0.384768371646713	N	N	3.35616415112274	1.68057734762086	1.68057734762086	splitr	36	0.56	0.56	0	N	0.56	N	N	2367	0	ENSG00000065054	ENSG00000228114	+	-	16	4	2089026	191010176	utr3p	upstream	SLC9A3R2	DUX4L3	2076888	191008560	+	+	0.56	2088407	64902350	+	-	Y	-	-	N	SKBR3_13_2_1	4	1	3	2	2	1	N	N	0.214814814814815	1	2	0.827783467410055	0.488392245771932	0.827783467410055	0.488392245771932	1	-	-	0.60524179975777
141469	TTTTTTTTTTTTTTTTTTTTTGACATTGGCAGAGCTAGCTGAGGTTTTATTTTGGACCAAAAA|AAAAAAAGCAATTGAATTGTTTTGTAGCTGGAGGCATGGGCAAGTGCGGTCCC	66	0.00952047881904607	0.962719498884455	0.675344691219421	N	Y	3.42576922243396	3.16576524317408	3.16576524317408	splitr	116	0.88679245283019	0.943396226415094	1	N	0.943396226415094	N	N	64916	0	ENSG00000170421	ENSG00000183230	-	-	12	10	53298868	69455927	utr3p	intron	KRT8	CTNNA3	53290971	67679719	-	-	0.88679245283019	53291012	69423144	+	-	Y	-	1	N	SKBR3_13_2_1	17	0	13.3333333333333	7	3	1	N	N	0	0	3	0.44700307240143	0.513225749794234	0.513225749794234	0.44700307240143	2	-	0	0.60524179975777
141130	AGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGAGGCGCATGAATGGATGAACGAGATTCCCA|AGTCTGGTGCCAGCAGCCGTGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATCTTGGGAGCGGGTGGGCTAGCGAGCCACAGCCCGTCCCTGCTTCTTGCCTCTCGGTGCCCCCTGGATGCTCTTAGCTGAGTGTCCTGTGGCCCGAAGCACTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAGCCGCCTGGATACTGCAGCTTGGAATAATGGAATAGGACCACAGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACG	1	0.00048038519781767	0.163782765099475	0.102428735043176	N	Y	3.69784855983781	3.66695566812472	3.66695566812472	splitr	81	0	0	0	N	0	N	N	0	1	ENSG00000226958	ENSG00000163046	+	+	X	2	108297792	133015542	intron	intron	RN28S1	ANKRD30BL	108297361	132905164	-	-	0	108297528	133013163	+	+	Y	1	0.81549815498155	N	SKBR3_13_2_1	10	1	7.5	5	2	1	N	N	1	1	2	0.802949963387753	0.827783467410055	0.827783467410055	0.802949963387753	2	0	0	0.60524179975777
139671	CAGGAGTGATGACGGGTGGAGGGGCTAGCTCGAGGCAGGGCTGGTGGGGCCTGAGGCCAGTGAGGAGTGTGGAGTAGGCGCCCAGGCATCGTGCAGACAGGGCGACATCAGCTGGGGACGATGGGCCTGAGCTAGGGCTGGAAAGAAGGGGGAGCCAGGCATTCATCCCGGTCACTTTTGGTTACAGGACGTGGCAGCTGGT|GCTGGAGGCGGAGCTTGGCAACATGCAGGGGCTGGTGGAGGACTTCAAGAACAAGTATGAGGATGAGATCAATAAGCGTACAGAGATGGAGAATGAATTTGTCCTCATCAAGAAGGATGTGGATGAAGCTTACCTGAACAAG	2	1	0.174603456520587	0.217484245625152	N	N	3.61360747730288	3.26823605978234	3.26823605978234	splitr	12	2.22044604925031e-16	2.22044604925031e-16	0	N	0.0774647887323944	N	N	83603	0	ENSG00000130600	ENSG00000231203	+	+	11	2	2022700	183937214	intron	intron	H19	KRT8P10	2016406	183935768	-	-	2.22044604925031e-16	2018730	183936736	-	+	Y	-	1	N	SKBR3_13_2_1	25	0	19	12	4	1	N	N	0	0	4	1.27478653981148	1.09267417698127	1.27478653981148	1.09267417698127	1	-	0	0.60524179975777
137297	AGTGCAGCTTGTGGCTCGTGTCCATCTTGCAGGTGGCTCTTCCTCCACATCACGACTGGGGTCTCGAAGAGGACGGGGGTAGGAAATCCTCCAGGATCTTAGGAAATTTCACTCCGCTTCTCCTGCTCAATGGTCTCTTTGGTCGGCAGGGT|CAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCCTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT	1	1	0.526775457519482	0.600084425908804	N	N	3.33676820853032	3.51104337473878	3.33676820853032	splitr	2	0	0	0	N	0.0263157894736842	N	N	6864	0	ENSG00000034510	ENSG00000226958	-	+	2	X	85133795	108297792	coding	intron	TMSB10	RN28S1	85132749	108297361	+	-	0.0131578947368421	85133223	108297614	-	+	Y	-	1	N	SKBR3_13_2_1	8	1	6.5	5	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	0	0.60524179975777
83075	ACCTTGGCCAGGGGTGCTAAGCAGTTGGTGGTGCAGGAGGCATTGCTGATGATCTTGA|GGGAGCCAAGGAGCACCTTGGACATCTGGAGTCTGGCAGGAAGTTAGCAAAGGTGACATCTTCTCGGGGGGAGCCGAGACTGCGCAAGGCTGGGGGGTTATGGGCCCGTTCCAGGCAGAAAGAGCAAGA	2	0.161062361396999	1	0.97388564551795	N	N	3.42204236083514	3.5246463161926	3.42204236083514	splitr	7	0.0689655172413792	0.0689655172413792	0	N	0.103448275862069	N	N	20857	83603	ENSG00000256901	ENSG00000130600	+	-	12	11	6647316	2022700	coding	intron	AC006064.3	H19	6645876	2016406	-	-	0.0689655172413792	6646370	2018967	-	+	Y	-	-	N	SKBR3_13_2_1	22	0	14.6666666666667	6	3	1	N	N	0	0	3	0.546337088490636	0.885728310128759	0.885728310128759	0.546337088490636	2	-	-	0.60524179975777
139818	TTAGTAGCTGTGGAGGAAGATGCAGAGTCAGAAGATGAAGAGGAGGAGGATGTGAAACTCTTAAGTATATCTGGAAAGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCTGCTGATGAAGATGATGACGATGATGATGAAGAGGATGATGATGAA|GATGATGACGATGATGATGATGATGATGATGATGAAGATGATGAAGATGAAGAAGATGGAGAAGAAGAGAATCAGAAGCGATATTATCTTAGACAGAGAAAAGCTACTGTTTACTATCAGGCTCCATTGGAAAAACCTCGTCACCAGAGA	19	0.818135484133455	0.950334320343323	0.985503540420955	N	N	2.46117615852528	2.10044806640443	2.10044806640443	splitr	69	0.173333333333333	0.166666666666667	0.666666666666667	N	0.286666666666667	N	N	14119	12701	ENSG00000181163	ENSG00000156802	+	-	5	8	170838141	124428590	coding	coding	NPM1	ATAD2	170814120	124332090	+	-	0.173333333333333	170819980	124382193	+	+	Y	-	-	N	SKBR3_13_2_1	80	0.425	36	8	3	1	Y	N	0	0.425	3	0.885728310128759	0.877450475454658	0.885728310128759	0.877450475454658	3	-	-	0.60524179975777
120729	GCCATTGCCGAGGCTGAGGAGCGTGGGGAGCTGGCGCTCAAGGATGCTCGTGCCAAGCAGGAGGAGCTGGAA|GCCGCCCTGCAGCGGGCCAAGCAGGACATGGCGCGGCAGCTGCGTGAGTACCAGGAGCTGATGAACGTCAAGCTGGCCCTGGACATCGAGATCGCCACCTACAGGAAGCTGCTGGAGGGCGAGGAGAGCCGGCTGGAGTCTGGGATGCAGAACATGAGTATT	5	0.859418621222718	0.87029732404608	0.434889079807473	N	N	3.49697642496855	3.07630956852383	3.07630956852383	splitr	187	0.555555555555556	0.541666666666667	0.25	N	0.680555555555556	N	Y	34840	64916	ENSG00000135480	ENSG00000170421	+	-	12	12	52662180	53298868	coding	coding	KRT7	KRT8	52626954	53290971	+	-	0.555555555555556	52639416	53292303	+	+	N	-	-	Y	SKBR3_13_2_1	20	0	11.25	8	4	2	Y	N	0	0	4	0.960228822195664	1.00989583024027	1.00989583024027	0.960228822195664	4	-	-	0.60524179975777
134622	CATTCCATACAAAATTGTTTCCTATAAGCATTCCTTTTATTCTCTATTCTATCCTGGGTCTGCCTCAACCGTGAGATAGGAGAGTCTCTGGTACTAGCTGCTGTAGCAGTGCCCTTCATCCAGGGCAGTTAATGGAGTCTTGGACCCTTTCTTTCTCTGGGATCCCTGCCCAGCACCTTCCTATAGAGATGACTTTAAAAGG|AAAAAAAAAAAAAAAAACAAACCTGACTTCATATAATTCTTAATA	4	1	0.807806667617636	0.951565574366007	N	N	3.47382827322697	2.64302879770522	2.64302879770522	splitr	20	0.377777777777778	0.377777777777778	0.5	N	0.511111111111111	N	N	4477	0	ENSG00000131236	ENSG00000104219	+	+	1	8	40538321	17082308	utr3p	utr3p	CAP1	ZDHHC2	40505905	17013538	+	+	0.377777777777778	40537924	17079506	+	+	Y	-	-	N	SKBR3_13_2_1	135	0.454545454545455	79.5	24	2	1	N	N	0	0.454545454545455	2	0.612559765883441	0.45528090707553	0.612559765883441	0.45528090707553	2	-	-	0.60524179975777
78598	TGCATTGAATCTGAGCACAGCATGGACACTCTGCTTGCAACCCTGAAGAAAACAGGAAAGACTGTTTCCTACCTTGGCCTTGAGTAGCAGGGGCCTGGTCCCCACAGCCCACAGGATGGACCAAAGGGGGCAG|AAGAAAATTGTCTGTCCATTGTTGCGGGAAGTCACAGACCCTGAATGGAGAGACCGGCTGAAGCCGCGGCAGAAGAACATAAATTGTGAAGATTTAATGGACATTTATCAGTTCCCAAAATTAATACTTTTATAATTTCTTACGCCTGTTTTTACTGCAGTCTCGGAACATAAAGTGTGA	1	1	1	0.935920242646516	N	Y	3.13383928169109	3.63552422018169	3.13383928169109	splitr	313	1	0	0	N	1	Y	N	1298	0	ENSG00000177556	ENSG00000213285	+	+	5	5	151152093	180899431	utr3p	upstream	ATOX1	AC138031.1	151121877	180898964	-	+	0	151125840	151110038	-	+	N	-	-	N	SKBR3_13_2_1	2	0.875	1.5	1	1	1	N	N	0	0.875	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	4	-	-	0.60524179975777
28865	TATGAAGGAGAAGGGTCAGGGCTGATTCGGGAGGATCCTATTGGTGCGGGGGCTTTGTATGATTATGGGCGTTGATTAGTAGTAGTTACTGGTTGAACATTGTTTGTTGGTGTGTATATTGTACTAGAGATTGCTCGGGGGAATAGATTATGTGATTAGGAGTAGGGTTAGGATGAGTGGGAAGAAGAAAGAGAGGAAATAAAGTTTGATTATGCCTTTTTGGGTTGAGGTGATGATGGAGGCGGAGATTTGGTGTTGTGAGATTGTTTTAGGTAGTAGCTTTTCTAGTCAGGCCAGGTCTAGGAGGAGTAGGGGTAGG|GAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTAGTCATCTAATTAGTGACGTTCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGTGGAATCCGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGCCATGAGA	1	2.62666494253478e-07	0.375556752806067	0.399915574091196	N	N	3.08714417023521	3.67593181695901	3.08714417023521	splitr	2	1.11022302462516e-16	0	0.5	N	0	N	N	31	0	ENSG00000132570	ENSG00000198626	+	-	5	1	134343649	238129359	intron	intron	PCBD2	RYR2	134240596	237205505	+	+	1.11022302462516e-16	134260509	237766406	+	-	Y	1.2575464834446	1	N	SKBR3_13_2_1	9	1	7.5	6	2	2	N	N	0	1	2	0.44700307240143	0.827783467410055	0.827783467410055	0.44700307240143	2	1	0	0.60524179975777
19471	GTGTTGGTATAGAATGGGGTCTCCTCCTCCGGCTGGGTCGAAGAAGGTGGTGTTGAGGTTACGGTCTGTTAGTAGTATAGTGATGCCAGCGGCTAGGACTGGGAGAGATAGGAGAAGTAAGACTGCTGTGATTAGGA|CAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTTGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGC	1	0.960189443411522	0.375556752806067	0.399915574091196	N	N	3.25459326553517	3.65384724021086	3.25459326553517	splitr	11	0.0917431192660551	0.055045871559633	0.5	N	0.0642201834862384	N	N	0	0	ENSG00000237973	ENSG00000141161	-	+	1	17	567996	33516364	intron	intron	RP5-857K21.6	UNC45B	566454	33474836	+	+	0.0917431192660551	567016	33478267	-	+	Y	1	1	N	SKBR3_13_2_1	3	1	2.5	2	2	1	N	N	0	1	2	0.827783467410055	0.703615947298547	0.827783467410055	0.703615947298547	1	0	0	0.60524179975777
65444	GGTTGTAGAAGCCCCGGTAGTTCTTCTTGTCCCCCAAGGTAAAGGTCTCCGGGAGCACATCCAGTTGAGCAGCCACATATGGCTTCAGACGTTCTGCCTGCCGCCGCCGCCGCCGC|CGCGATGCGCTACGTCGCCTCCTACCTGCTGGCTGCCCTAGGGGGCAACTCC	1	0.0878423681954005	0.254583648908217	0.223418152789081	N	N	3.47695798776018	3.20968685721433	3.20968685721433	splitr	17	0	0	0	N	0	N	N	11705	10215	ENSG00000142949	ENSG00000177600	-	-	1	11	44089343	812880	coding	utr5p	PTPRF	RPLP2	43990858	809647	+	+	0	44071946	810037	-	-	Y	-	-	N	SKBR3_13_2_1	2	0	1.5	1	1	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
133520	AGTACCAGATATCCAGCCATATTCCCAGCTCCATTATTCAAATCATTTCCCATAGCCCAGCTCCTCTCTGTTCTCCCCCTACTACCAATTCTTTGGCTCTTACACAATTTTTATCCCTCAAATATTCATCCCTGGCCCAACCAGTCCCCTGAGC|CTGAATCTCCCCTCCTCACAGTT	1	0.353854973869309	0.704121951840997	0.776581847210919	N	N	3.35087501109391	3.22241711314635	3.22241711314635	splitr	0	0.0869565217391303	0.0869565217391303	0	N	0.0869565217391303	N	N	13593	0	ENSG00000189334	ENSG00000228232	-	+	1	X	153589462	39647390	utr3p	downstream	S100A14	GAPDHP1	153586731	39646386	-	-	0.0869565217391303	153587157	39646292	+	+	Y	-	-	N	SKBR3_13_2_1	10	0	6	2	2	1	N	N	0	0	2	0.538059253816536	0.554614923164737	0.554614923164737	0.538059253816536	2	-	-	0.60524179975777
140514	CCACACCAACATTGACGCCTTCTGGGATGGGGCAGGCCGGGGAACAGGTCTTGCTCAGGCTGTGGCCAAATGTCACGAGATTCCCAATG|TCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGACTTGGCGGAATCAGCGGGGAAAGAAGACTCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACGTGAGAGGT	1	0.773213797860988	0.205558172728075	0.155228020814782	N	N	3.66488952858494	3.38552945952599	3.38552945952599	splitr	15	0.112359550561798	0	0	N	0.235955056179775	N	N	1896	0	ENSG00000160932	ENSG00000226958	-	-	8	X	144105249	108297792	coding	intron	LY6E	RN28S1	144099399	108297361	+	-	0.157303370786517	144102846	108297532	-	-	Y	-	1	N	SKBR3_13_2_1	5	1	5	5	2	1	N	N	0	1	2	0.496670080446033	0.45528090707553	0.496670080446033	0.45528090707553	1	-	0	0.60524179975777
122284	CCCCCTAGTTGGGGGGTGGGAGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAATCCTGCGAAGAAAAAAACTTCTGAGGTAATAAATAGGATTATCCCGTATCGAAGGCCTTTCTGGACAGGTGGTGTGT|GGTGGGAAGAGGGCCATCTGCCTGAATGTAACCTGCTAGCTCTCCGAAGGCCCTGCGGGCCTGGCTTGTGTGAGCGTGTGGACAGTGGTGGCCGCGCTGTGCCTGCTCGTGTTGCCTACATGTCCCTGGCTGTTGAGGCGCTGCTTCAGCCTGCACCCCTCCCTTGTCTCATAGATGCTCC	1	0.17238315544984	0.447538936456759	0.5	N	N	3.70360170818306	3.54296933622177	3.54296933622177	splitr	5	0	0	0	N	0.107692307692308	N	N	3	20401	ENSG00000230021	ENSG00000197746	-	+	1	10	659930	73611126	intron	utr3p	RP5-857K21.4	PSAP	536816	73576055	-	-	0	569967	73576518	-	+	Y	0.828962371721779	0.894445487568568	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.44700307240143	0.430447403053228	0.44700307240143	0.430447403053228	2	0	843	0.60524179975777
133899	CCAGAGGGAGGAATGCTGTGGATATGGGTACAGCCGGGCGCGAGATTTACACCCTCTCCCCCGCACTTTCAAGGGCCCTCCAGAGCTCACCAGATGCCGCTGGAAGCGCGACGCTTTCCAAGGCGCGGACCCCTCTCTCCAGGCGAACCCAATTCCAGGGCGCCCTGCCCTTCACAAGGAGAAAAGAACTCTCCCCGGGGCTTCCATTGGCTTCTCTGGGATCCTTCGCATTACTGTGCTGGACGCTTGGCAGTGTCCATCTCCGCCACTCCGGATTCGGG|GATCTGAACCCGACTCCCTTTCGATCCGCTGAGG	1	0.0485114361727254	0.612610548302747	0.693969709788871	N	Y	3.64656650855576	3.27916388187848	3.27916388187848	splitr	315	0	0	0.379310344827586	N	0	N	N	0	0	ENSG00000252194	ENSG00000241530	+	-	1	2	108113552	230045666	downstream	intron	AC114491.2	AC006368.1	108113461	230045488	-	-	0.882352941176471	108113346	230045516	+	-	Y	-	1	N	SKBR3_13_2_1	3	1	1.37931034482759	1	8	1	N	N	1	0.671232876712329	29	0.529781419142435	0.60428193120934	0.60428193120934	0.529781419142435	2	-	0	0.60524179975777
135227	TCTAGTGATGAGTTTGCTAATACAATGCCAGTCAGGCCACCTACGGTGAAAAGAAAAATAAATCCTAGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAGTGT|GGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAG	1	0.15096160244996	0.311204357582937	0.306030290211129	N	N	3.64656650855576	3.31060064725118	3.31060064725118	splitr	11	0.263157894736842	0.210526315789474	0.5	N	0.236842105263158	Y	N	0	0	ENSG00000237973	ENSG00000162669	-	+	1	1	567996	91870426	intron	intron	RP5-857K21.6	HFM1	566454	91726323	+	-	0.263157894736842	567430	91853076	-	+	N	1	1	N	SKBR3_13_2_1	2	1	2	2	2	2	N	N	0	1	2	0.596004096535239	0.786394294039552	0.786394294039552	0.596004096535239	2	0	0	0.60524179975777
13455	GTAAGGGTTTTCACGAAGATCTGCATTTTGACCTGTTAGCGGATACCAGGATCCTGCCAAT|CACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAA	2	0.00230245860176976	0.0528227949490863	0.0261143544820491	N	N	3.79040344379773	3.2159209387304	3.2159209387304	splitr	20	0.114754098360656	0.098360655737705	0	N	0.180327868852459	N	N	7494	3	ENSG00000170315	ENSG00000230021	-	-	17	1	16286054	659930	utr5p	intron	UBB	RP5-857K21.4	16284113	536816	+	-	0.114754098360656	16284470	569353	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	4	0	2.75	2	4	1	N	N	0	0	4	0.869172640780558	1.15889685437408	1.15889685437408	0.869172640780558	1	-	0	0.60524179975777
131408	TTACTTAGAGATGGAGTCTTGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACA|GGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACCCGATCGGCATAGCGCACTACAGCCCAGAACTCCTGGGCTCAAGCGATCCTCCCACCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACG	13	0.407906156189289	0.856508886192066	0.94517513219025	N	Y	3.53721618787652	3.62192127872787	3.53721618787652	splitr	289	0.5	0	0.95	N	0.775862068965517	N	N	37	0	ENSG00000198298	ENSG00000253128	-	-	10	14	44113351	107281252	utr3p	downstream	ZNF485	IGHV4-80	44101855	107281000	+	-	0.344827586206896	44113164	50329321	-	-	Y	-	-	N	SKBR3_13_2_1	561	1	164.3	10	20	1	N	N	1	1	20	0.579448427187038	0.562892757838837	0.579448427187038	0.562892757838837	0	-	-	0.60524179975777
109887	CAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACCTCCATCAT|ACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCTTAATCCAAGCCTACGTTTTCACACTTCTAGTAAGCCTCTA	1	0.00252079186051181	0.447538936456759	0.5	N	N	3.02333210006258	3.56335849579072	3.02333210006258	splitr	3	0.0247933884297522	0.0247933884297522	0	N	0.570247933884297	Y	N	54817	38194	ENSG00000198786	ENSG00000198899	+	-	MT	MT	14148	9207	coding	coding	MT-ND5	MT-ATP6	12337	8527	+	+	0.0247933884297522	14063	8946	+	-	N	-	-	N	SKBR3_13_2_1	2	0	2	2	3	6	Y	N	0	0	3	0.852616971432356	0.885728310128759	0.885728310128759	0.852616971432356	2	-	-	0.60524179975777
139474	TGCTAAGAACTGTAGCCCTTTTCTGCTGTTTTTAGAACCTTCTGCTACCATATCCACCACTTCCACCACCAGATCCATAACCACCACCATAGGGACTGCCCGAGCTTCTTCCACCAAAACTGCCCCCTTTCATGGGTCCATAATTTGATTGCTGTTGTCCACTATAATTTCCAAAATCATTATAGTTCCCACCA|CCACCATAATTACCCCCATACTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAAATACAAATTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCC	1	0.00365325061203476	0.254583648908217	0.223418152789081	N	N	3.23846952379497	2.97696846644877	2.97696846644877	splitr	14	0	0	0	N	0	N	N	3091	3	ENSG00000170144	ENSG00000230021	-	-	2	1	178086111	659930	coding	intron	HNRNPA3	RP5-857K21.4	178077291	536816	+	-	0	178083778	568943	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	39	0	29.5	20	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	0	0.60524179975777
55378	CTGGGGCCTCAGTGCCTGTGTTTCGGTAAATGCAGGGCAGGTAGACGATCTCTTCCCTGGGTCCTTTCATGGCCTCCAGAGGGGTGGAGTAGCCGGGTCCACAATTCCCACATTTCGTAGCCATGCTGCCGACTGGTACACTTTGATCCCGGCGGGTTTGC|AAGTTTAGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCCTAGTTGGATCTTGGGAGCGG	1	1	0.704121951840997	0.776581847210919	N	N	3.44512531223303	3.57336771439491	3.44512531223303	splitr	2	0	0	0.666666666666667	N	0.0851063829787234	N	N	5674	1	ENSG00000143416	ENSG00000256642	-	-	1	16	151345209	33962503	utr5p	upstream	SELENBP1	NCRNA00273	151336778	33961052	-	-	0	151345154	33963102	+	-	Y	-	-	N	SKBR3_13_2_1	2	1	1.33333333333333	1	1	1	N	N	0	1	3	1.04300716893667	0.645671104579843	1.04300716893667	0.645671104579843	1	-	-	0.60524179975777
140429	TGGCGGGGGAGGAGGAATTGGCATTCTTGCCCTGCTCCCAGTTGGCACTGTTCTCTCTCCGTCTTTATTTGTACCTTTAGGTCATTCATATACCCAGCCGCCCCGGCCTCTTTCCGACCTGGCCGCAGCTGCTCTGGGAGCGAATCCTCTGCCGCCTACACTCCGGCTTCGTCCTGTCCTGCTCGCCCCCCGGCAAGCTCTT|CCCCGCCCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCACCGCCCGGGT	1	1	0.899266171301115	0.897571427984624	N	Y	3.21336028565066	1.8085371557048	1.8085371557048	splitr	44	0.833333333333333	0.75	0	N	0.875	N	N	4455	668	ENSG00000171475	ENSG00000004399	-	-	17	3	38440388	129325661	utr5p	intron	WIPF2	PLXND1	38375574	129274018	+	-	0	38375661	129324120	-	-	Y	-	1.63309385884853	N	SKBR3_13_2_1	64	0.660377358490566	24.6666666666667	3	3	1	N	N	0	0.660377358490566	3	0.76156079001725	0.438725237727329	0.76156079001725	0.438725237727329	1	-	2	0.60524179975777
47459	GTAGTATAGTGATGCCAGCGGCTAGGACTGGGAGAGATAGGAGAAGTAAGACTGCTGTGATTAGGACGGATCAGACGAAAAGGGGCGTTTGGTATTGGGTTATGGCAGGGGGTTTTATATTAATAATTGTT|ATGATGATTTTGATGATGAGGAAGCTGAAGAAAAAGTGCCAGTGAAGAAATCTATATGAGATACTCCAGCCAAAAATGC	1	0.748089010690316	0.163783040919641	0.102428735043176	N	N	2.86059373576816	2.94906038333848	2.86059373576816	splitr	15	0.151898734177215	0.10126582278481	0	N	0.189873417721519	N	N	0	0	ENSG00000237973	ENSG00000225159	-	-	1	1	567996	27534287	intron	intron	RP5-857K21.6	RP11-40H20.2	566454	27533421	+	+	0.151898734177215	566951	27533935	-	-	N	1	1	Y	SKBR3_13_2_1	30	0.389473684210526	22.4	10	5	1	N	N	0	0.389473684210526	5	1.01817366491437	0.786394294039552	1.01817366491437	0.786394294039552	3	0	0	0.60524179975777
71175	GTCTTCTGGTTTGTTGAAGCAGTAAGTCAGACAACATTTGCCACAATAATGTCTGTCAAAGTGGCTTGCCATAAACACCCCAGCACCACATTCATCAGAAGGGCACTCTCGACGAAGGCGACTAATTTT|GCCATCCTCATCCAAACCCCCTGAAGCTTCACCGGCGCAGTCATTCTCATAGTCGCCCACGGACTTACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTACGAACGTACCCACAGTCG	2	1	0.226190941649262	0.313727891882291	N	N	3.52617389950245	3.39487633072086	3.39487633072086	splitr	25	0.139344262295082	0.0901639344262294	0	N	0.139344262295082	N	N	0	31	ENSG00000224631	ENSG00000132570	+	+	16	5	61089818	134343649	intron	intron	RP11-51O6.1	PCBD2	61089349	134240596	-	+	0.139344262295082	61089483	134262829	+	+	Y	1	1.2575464834446	N	SKBR3_13_2_1	20	0	16	12	2	1	N	N	0	0	2	0.720171616646748	0.496670080446033	0.720171616646748	0.496670080446033	1	0	1	0.60524179975777
141430	CCAGAGAAGGAGCCTGAGACGGATCCAGATTAGATGAATCATTCTCCATTGTAGATGGTGTCTTCCCCAGCAGAACAGCAAGGTCAATTCTCTGACCAGCAGTGATTGTCACATTCTCCGCAGGCAGAGGCACTGAAGACACATTAGAGGCA|GTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAG	1	0.561522878466796	0.704121951840997	0.776581847210919	N	N	3.63080414160633	3.44871903508266	3.44871903508266	splitr	14	0.164556962025316	0.164556962025316	0	N	0.164556962025316	N	N	3970	0	ENSG00000143569	ENSG00000252318	-	+	1	2	154243986	133038738	coding	intron	UBAP2L	AC097532.1	154192655	133038647	+	-	0	154215716	133038720	-	+	Y	-	1	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.827783467410055	0.44700307240143	0.827783467410055	0.44700307240143	4	-	0	0.60524179975777
65272	CTTGCATCAGCAAAGGGGTCGAAAGAGTGGAGGTTCTGGATAGCGGACATACGATACGATTCCTTTTCCTCGGTGGAAACGGCCTGCGGAAGGCGGCGGCGGCGGTGGCGGGAGAAGGCGGGCAGGGGGGAACGGAACGTCGGGAAGCG|AGGGGCAACCAGGGGAAGATGGGGTGCTGGAGGAGAGCTTGTGGGAGCCAAGGAGCACCTTGGACATCTGGAGTCTGGCAGGAGTGATGACGGGTGGAGGGGCTAGCTCGAGGCAGGGCTGGTGGGGCCTGAGGCCAGTGAGGAGTGTGGAGTAGGCGCCCAGGCATCGTGCAGACAG	2	0.211152894854479	0.83329670915386	0.935648065170616	N	N	2.81357710231486	3.1703920357936	2.81357710231486	splitr	13	0.0469798657718121	0.0469798657718121	0	N	0.10738255033557	N	N	8885	83603	ENSG00000173812	ENSG00000130600	-	-	17	11	39848920	2022700	utr5p	intron	EIF1	H19	39845137	2016406	+	-	0.0469798657718121	39845192	2019009	-	+	Y	-	-	N	SKBR3_13_2_1	4	0	2.33333333333333	1	2	1	N	N	0	0	3	1.00161799556617	0.894006144802859	1.00161799556617	0.894006144802859	1	-	-	0.60524179975777
119034	TCCGAGGGGGTGGAGATGGTCGAAAGAAACGGAAACGGTGTGGTACTTGTGAGCCCTGCCGGCGGCTGGAAAACTGTGGCGCTTGCACTAGCTGTACCAACCGCCGCACGCACCAGATCTGCAAACTGCGAAAATGTGAGGTGCTGAAGAAAAAAGTAGGGCTTCTCAAGGAGGTG|GAAATAAAGGCTGGTGAAGGAGCCGGGCCGTGGGGACAAGGAGCGGCTGTCAAGACAGGCTCAGAGCTCAGCCCAGTTGATGGACCTGTTCCAGGTCAGATGGACTCAGGGCCAGTGTACCATGGGGACTCACGGCAGCTAAGC	2	0.775152410212286	0.686645868634774	0.128734512121114	Y	Y	3.22167408707565	3.33255199106474	3.22167408707565	splitr	320	1	0	0	Y	0	N	Y	2	301	ENSG00000255989	ENSG00000187605	+	-	2	2	74220867	74329698	intron	coding	RP11-711M9.1	TET3	74213653	74229840	+	+	0	74213833	74230237	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	6	1.00161799556617	1.24167520111508	1.24167520111508	1.00161799556617	4	-	-	0.60524179975777
139870	ATTCACAATTCGAATTTGGAAGAAAGAAGGAAAACATGACGTCTCCAGCCAAATTCAAAAAGGATAAGGAGATCATAGCAGAGTACGATACTCAGGTCAA|AGAGTAAAGAAGTCGGCCAGCAGCTCCAAGATGATTTGATGAAGGTCCTGAACGAGCTCTACTCGGTGATGAAGACATATCACATGTACAATGCCGACAGCATCAGTGCTCAGAGCAAACTAAAGGAGGCGGAGAAGCAGGAGGAGAAGCAAATTGGTAAATCGGTAAAGCA	2	1	0.432000037697984	0.642721193094354	N	N	3.47076375903745	3.51997967077972	3.47076375903745	splitr	78	0	0.0899999999999999	0	N	0.47	N	Y	59	709	ENSG00000236933	ENSG00000163486	+	-	1	1	120838343	206637783	intron	coding	RP11-439A17.7	SRGAP2	120835810	206516198	-	+	0	120835810	206557369	-	-	N	-	-	Y	SKBR3_13_2_1	6	0	4.33333333333333	3	3	1	N	N	0	0	3	0.885728310128759	0.960228822195664	0.960228822195664	0.885728310128759	4	-	-	0.60524179975777
32027	TGAAAAAGTCATGGAGGCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTATGGAGGG|TTATTCTAATGTGAGGGTAGGGAAAATGTGGATAACATTACTGGGGTGAGGGAGGCATTGTTCTTTAGTTGGAGTTCTCATTCTTATTCTCCAGTACTGACTTGTGGGGAAAGCATACTTTTTCACTGCCAGGTACTGAATGCAGAGGCTCAG	1	0.256540803678956	0.311204357582937	0.306030290211129	N	N	3.34512186274866	3.33424740824393	3.33424740824393	splitr	8	0.0331125827814569	0	0	N	0.0331125827814569	N	N	0	1839	ENSG00000237973	ENSG00000079332	-	+	1	10	567996	71930279	intron	utr3p	RP5-857K21.6	SAR1A	566454	71909960	+	-	0.0331125827814569	567916	71910712	-	+	Y	1	0.912346655524867	N	SKBR3_13_2_1	2	0.810344827586207	2	2	2	1	N	N	0.810344827586207	0	2	0.480114411097832	0.786394294039552	0.786394294039552	0.480114411097832	2	0	45	0.60524179975777
74139	GTTATCTGGTCCTGTAATCTCCACGTCGATGTCCAGGAAGCCGCCCTCCGCCACCTCGAAGATGAGGCCCATCTTGGTGCCCGAGGTGACCCGCTCAAAGAAGCACTCTTCAGCATGGGCGTCGATGCTAACGAAATAGCCCGAGACCGTGGCCAGGAGAGCGGCCAGAAGCACCAGCAGTTCAGCAAGCGTCACCATGGTGGGGCTGAGGCCGAAGCCAGGACCCGGACTGCGGCCTCCACAGCCGCCGCCGCCGCCGCCGCCGCCGCCCCGCTGCCTTCT|CACCCCCCGCCGCCGCCGCCCCTTGTTGCAGAGCTTGGGCTGG	1	0.194039286278947	0.254583648908217	0.223418152789081	N	N	2.34496349209232	3.02122610772945	2.34496349209232	splitr	14	0.0697674418604651	0.27906976744186	0	N	0.255813953488372	N	N	2796	1963	ENSG00000086598	ENSG00000160551	-	-	12	17	124083116	27871502	utr5p	upstream	TMED2	TAOK1	124069078	27717943	+	+	0.0697674418604651	124069100	27717852	-	-	Y	-	-	N	SKBR3_13_2_1	7	0.981481481481482	3	1	4	1	N	N	0	0.981481481481482	5	1.18373035839638	0.44700307240143	1.18373035839638	0.44700307240143	2	-	-	0.60524179975777
129269	GACCACCAGAAACGGGGCCACCAGACAGATAGTCCATACCCTGTTGCACACATGAGCGACAAACTCAAGAGACAACACACAAACTAAGCCTACATTTTGGCTTCCAGATTTGGTTCTCCTAGTT|TAAAAAAAAAAAAAAAAAAAGTCACTGCTCTAGGGAAGGAGGAACTAG	1	0.290467481002461	0.842938967773855	0.869602123524748	N	N	3.61616813038263	2.6294258562514	2.6294258562514	splitr	20	0.375	0.375	0	N	0.479166666666667	N	N	6790	3	ENSG00000115884	ENSG00000124334	-	+	2	X	20425194	155251689	utr3p	upstream	SDC1	IL9R	20400558	155227246	-	+	0.375	20401857	124313927	+	+	Y	-	-	N	SKBR3_13_2_1	76	0.94	59	42	2	1	N	N	0	0.94	2	0.629115435231642	0.413891733705027	0.629115435231642	0.413891733705027	1	-	-	0.60524179975777
78041	ATCATATACCAAATCTCTCCCTCACTAAACGTAAGCCTTCTCCTCACTCTCTCAATCTTATCCATCATAGCAGGCAGTTGAGGTGGATTAAACCAAACCCAGCTACGCAAAATCTTAGCATACTCCTCAATTACCCACATAGGATGAATAATAGCAGTTCTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTATCCTAACTACTACCGCATTCCTACTACTCAACTTAAACTCCAGCACCACGACCCTACTACTATCTCGC|ACCTGACTCCTACCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAGTGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATC	1	0.885565552152976	0.612610548302747	0.693969709788871	N	Y	3.30484224704734	3.48337348351473	3.30484224704734	splitr	369	1	0.0645161290322582	0	Y	0.172043010752688	N	N	24767	93473	ENSG00000198763	ENSG00000198886	+	-	MT	MT	5511	12137	coding	coding	MT-ND2	MT-ND4	4470	10760	+	+	0	5165	10967	+	-	N	-	-	N	SKBR3_13_2_1	4	0	3	2	2	2	Y	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
126747	CACTCTCATTCACACACACAAATCTCAGGAACAAACGGTCCCAGAGTCCTCCGGACCCCTGCCCAGGGTCTCTGCAGGTCTCTGCCCCACGCGTTCCCGTCGCTGACAAAGCCACCAGCTGCCTCCTTTAAGCTTGGTGCTCCGGCTCTGGGCCTTTCTTGCGCTCTATTTT|TTTTTTTTTTTTTTTTTTTAAGAAATGAGGTCTCACTATGTTGCCCAGG	2	1	0.871805782194921	0.947136850676906	N	N	3.03334131866677	2.78839331625704	2.78839331625704	splitr	44	0.448979591836735	0.448979591836735	0.5	N	0.489795918367347	N	N	1210	108	ENSG00000177732	ENSG00000164674	+	-	20	6	310865	159185908	intron	intron	SOX12	SYTL3	306207	159071046	+	+	0.448979591836735	309165	159170546	+	-	Y	-	0.656991160399716	N	SKBR3_13_2_1	1	0.6	1	1	0	1	N	N	0	0.6	2	0.587726261861139	0.413891733705027	0.587726261861139	0.413891733705027	2	-	5.5	0.60524179975777
116125	CATTAACCTTCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCTTAATCCAAGCCTACGTTTTCACACTTCTAGTAAGCCTCTACCTGCACGACAACACATAATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCCTAGCCATGTGATTTCACTTCCACTCCATAACGCTCCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGCCACCACACACC|ACATTAACGAAAATAACCCCACCCTACTAAACCCCATTAAACGCCTGGCAGCCGGAAGCCTATTCGCAGGATTTCTCATTACTAACAACATTTCCCCCGCATCCCCCTTCCAAACAACAATCCCCCTCTACCTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTCTAACAGCCCTAGACCTCAACTACCTAACCA	1	2.84062458332337e-10	0.390564714822603	0.421349522516249	N	Y	3.26501305929329	2.87064280716569	2.87064280716569	splitr	551	1	0	0	Y	0.0696517412935324	N	N	33743	54817	ENSG00000198938	ENSG00000198786	+	-	MT	MT	9990	14148	coding	coding	MT-CO3	MT-ND5	9207	12337	+	+	0.044776119402985	9424	13661	+	-	N	1.27831322678495	-	N	SKBR3_13_2_1	2	0	2	2	2	1	Y	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	4551.5	-	0.60524179975777
7662	GATTTCCCTTACCTACATTGTTCTAACATGCCAGAGGCTGTTTACCTTGGAGACCTGCTGTGGATATGGTTACAGCCTGGTGTGAGATTTACACCCTCTCCCCCAGATTTTCAAGGGCCTGTGAGAGCTCACCAGGTGCCTCCTGATCTATGATTCTTTCCAAGGCACAGACCTCTCTCTAAGGGTGAATCCACTACAGGGTGCCCTGCTCTTCACAAAAAGAACTCTCCCCTGGGCTCCCACCAGCTTCTCCAGGATCACTTCCATTACCTCCCTGAATGCCTCATGGTGCCCATCTC|CGCCACTCCGGATTCGGGGATCTGAACCCGACTCCCTTTCGATCCGCTGAGGGCAAGG	1	0.00286660380954157	0.375556752806067	0.399915574091196	N	Y	3.43528392749819	3.27870928670295	3.27870928670295	splitr	357	0	0	0.25	N	0	N	N	0	0	ENSG00000251948	ENSG00000241530	+	-	19	2	24184165	230045666	downstream	intron	AC092279.1	AC006368.1	24184075	230045488	-	-	0.810344827586207	24183952	230045498	+	-	Y	-	1	N	SKBR3_13_2_1	2	1	1.5	1	2	1	N	N	1	0.80327868852459	4	0.720171616646748	0.504947915120133	0.720171616646748	0.504947915120133	1	-	0	0.60524179975777
47156	GCAGCCCTCCTTCCCAGGTGTGGCCAGAAGAACCCCCCATCCCAAGACTTGAAATGTCTGTTGCTCACCTCTGTCCCTCCAGAACTCGGCTTCCCCATCTTCACTTGCAAAACAAGTGCAGCCCTGCGCCCATCAGCACCCCCTCCGGTGTGCACACAGGCCAGTGAGCGGTGGCCGACCAGCGC|CCCCCCCCCCCCCACCCTCCACATCAAGCAGGCTCCTGAGTGCTCAGA	2	1	0.746902376490081	0.902195137443948	N	N	3.26926912955223	2.83921135922266	2.83921135922266	splitr	30	0	0.5	0	N	0.5	N	N	677	18	ENSG00000148411	ENSG00000203451	+	-	9	16	138987131	90233540	utr3p	upstream	NACC2	AC133919.1	138898383	90232651	-	+	0.5	138901648	29144659	-	-	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.645671104579843	0.413891733705027	0.645671104579843	0.413891733705027	3	-	-	0.60524179975777
11725	CGAGTGACCCATCTTCAACTGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCA|CCTGCAGTGGCTCCACCCAGGCCCATGTTCTATTAAGGG	1615	0.0432841298559781	0.174632152079201	0.672392649007797	N	N	3.58424216889964	3.52376382788706	3.52376382788706	splitr	56	0	0	0	N	0.487179487179487	N	N	0	0	ENSG00000251948	ENSG00000240017	+	-	19	12	24184165	75347650	intron	downstream	AC092279.1	AC073525.1	24184075	75347469	-	-	0.538461538461539	24184147	75347373	+	-	Y	1	-	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	1	0.875	2	0.422169568379128	0.463558741749631	0.463558741749631	0.422169568379128	1	0	-	0.60524179975777
95051	TTTGCAGTCCCCCTGACTTTCTTCATTCTGTTCTTGCGTTCCTTTCGTTGCTTTCTTGAGGTCTTTTTCTTCTCATACAGGCCATGTCTTGCAAGTCTATGTTTGGGTTCATTTTTCTTTGCATAATCCAGGGAATCATAAATCATGCCAAAGC|CAGATTCTTGCTTTGTTGCCCAGGCTGGAGTACAGTGGCATGATCTCAGCTCCTCACTCCAACCTCTTTCTCCTGGGTTTAAGCAATTCTTGTGCCTCAGCCTCCCAAGTACCTAGGATTACAGACGTGCACCACCACACCTGGCTAATTTTTGTATTTTTCCGTACGCCACATTTCCCGCGCCCCACCGCGGGGCGGGGATTCGGCGCTGGGCTCTTCCCTGTTCACTCGCCATTACTGAGGGAATCCTGGTTAGTTTCTTTTCCTCCGCTGACAAATATGCTTAAATTCAGCGGGTC	1	6.8388726793531e-06	0.321839855309698	0.321669634186996	N	N	3.25935319690388	3.47911741325579	3.25935319690388	splitr	161	2.22044604925031e-16	0	0	N	0	N	N	25185	0	ENSG00000138326	ENSG00000141161	-	-	10	17	79816570	33516364	coding	intron	RPS24	UNC45B	79793518	33474836	+	+	2.22044604925031e-16	79795411	33477954	-	-	Y	-	1	N	SKBR3_13_2_1	7	1	4.5	2	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
110042	CGTGGGGTGGAAGGAGGCGGCGGGGGCGACGGCGGCGGCGACGGCGG|CGTCCTGACCGCGTCCGACGGGCTGCTGGCGGGCAACGAGAAGCTAACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGCGGCCAACGGCGAGCTAGAGGTGAAGATCCGCGACTGGTACCAGAAGCAGGGGCCTGGGCCCTCCCGCGACTACAGCCACTACTACACGACCATCCAGGACCTGCGGGACAAGATTCTTGGTGCCACC	4	1	0.14675604026501	0.284685432252731	N	N	2.49552114937202	3.3787033886175	2.49552114937202	splitr	27	0.212765957446808	0.531914893617021	0.166666666666667	N	0.531914893617021	N	N	29	58670	ENSG00000135749	ENSG00000171345	+	-	1	17	233431459	39684560	utr5p	coding	PCNXL2	KRT19	233119881	39679869	-	-	0.212765957446808	233431330	39684299	-	+	Y	-	-	N	SKBR3_13_2_1	2	0.535714285714286	1.16666666666667	1	2	1	N	N	0.535714285714286	0	12	0.463558741749631	1.31617571318199	1.31617571318199	0.463558741749631	2	-	-	0.60524179975777
137646	GATTGCTTGAACCTGGGAGGTGGAGGTTACAGTGAGCCAAGATCACACCATTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCT|TGCTACACAGAGAAGAAATCTGCTCCAACAGCAACACAGAATTCTGTTTGGTACTGTTTGTCAATCCTAACTCAAATTCAATATCCGACA	2	0.365212191967802	0.871805782194921	0.741210747674579	N	Y	3.55401162459584	3.29396779254261	3.29396779254261	splitr	88	0.909090909090909	0.227272727272727	0	N	0.0227272727272729	N	N	1	638	ENSG00000093144	ENSG00000172167	+	+	6	8	127664754	121554373	utr3p	coding	ECHDC1	MTBP	127609855	121457640	-	+	0.0681818181818182	127634368	121475999	-	+	Y	-	-	N	SKBR3_13_2_1	20	1	12	4	2	1	N	N	1	0	2	0.488392245771932	0.538059253816536	0.538059253816536	0.488392245771932	1	-	-	0.60524179975777
76656	GGATGCAAAGTTTTCACACGTCCCCCCAACATTTCAGGAAATCCCGTCAACTCAGAGACATCTCTGACTGCCAGACCAGCATCCCTGAGAGCTTTTGCAGTCCCTCCGGAAGCGACCAGATTCAAACCAAGAGCGGTCAGGTTTCTTGCAAATTCCACAAGGCCGGTTTTGTCAGAGACACTAAATAAGG|TGTGAAAATGATGGGGCAGCTTCCATCTCAGGCTCTCACTTCCTTTCCCTCTCTCTTGGATCACTGGCTCAGGAGAAGCCAGCTGTCATTCTGTGAACAGCCCTCTG	2	0.470460098137837	0.808744637905766	0.435742853891277	N	Y	3.72551845106187	3.48912663185998	3.48912663185998	splitr	297	0	0.0467289719626168	0	N	0.0467289719626168	Y	N	1201	0	ENSG00000138363	ENSG00000220804	-	+	2	2	216214487	243102304	coding	upstream	ATIC	AC093642.5	216176540	243030784	+	+	0	216177221	216159041	-	+	N	-	-	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0	1	3	0.44700307240143	0.720171616646748	0.720171616646748	0.44700307240143	4	-	-	0.60524179975777
141087	ACATGTAGCTTCTTCTCCGAGAAAACACCAAATGGCGGATGACGCCGG|TGCAGCGGGGGGGCCCGGGGGCCCTGGTGGCCCTGGGATGGGGAACCGCGGTGGCTTCCGCGGAGGTTTCGGCAGTGGCATCCGGGGCCGGGGTCGCGGCCGTGGACGGGGCCGGGGCCGAGGCCGCGGAGCTCGCGGAGGCAAGGCCGAGGATAAGGAGGTAGGTATCAGCCACGCTCGGGGTCGGGCCCCTGGGCGGCGCCGGAGAGCGGTCCTGGTCACTGGCGCCTTTTCTCCCTTTAGTGGATGCCCGTCACCAAGTTGGGCCGCTTGGTCAAGGACATGAAGATCAAGTCCCTGGAGGAGATCTATCTC	40	0.329368088483112	0.35836885059869	0.807679835450765	N	Y	3.61616813038263	2.63045892602129	2.63045892602129	splitr	0	0.416666666666667	0.416666666666667	0	N	0.416666666666667	N	N	12	34301	ENSG00000237463	ENSG00000140988	-	+	1	16	165551392	2014861	intron	coding	RP11-280O1.2	RPS2	165446078	2012061	-	-	0.416666666666667	165550834	2014609	+	+	Y	-	2.62783989935565	N	SKBR3_13_2_1	26	0	15	4	2	1	N	N	0	0	2	0.422169568379128	0.827783467410055	0.827783467410055	0.422169568379128	1	-	3349	0.60524179975777
136868	GGGCGCCCCTCCCCCAGCCTCGCTGCCGCCTTGCAGTTTGATCTCAGACTGCTGTGCTAGCAATCAGCGAGATTCCGTGGGCGTAGGACCCTCGGAGCC|AGACACTTCTGAGAAATTCATCAGGCTGTGAAGCGCGCCGTGATGAATATCGAACAGAGTTTACCACAGCTTTGCAGCGCGTTGACTTATTCATGGGTCAATTCAGCGAAGTCCTCTTAACATCTATATC	1	0.0649358364735874	0.311204357582937	0.306030290211129	N	Y	3.67423639977982	3.71976530271662	3.67423639977982	splitr	229	0.94949494949495	0.171717171717172	0.75	N	0.95959595959596	N	N	304	715	ENSG00000145687	ENSG00000105976	+	-	5	7	81047616	116438440	intron	intron	SSBP2	MET	80708840	116312248	-	+	0	80912255	116364900	-	-	Y	-	-	N	SKBR3_13_2_1	29	1	15.75	8	4	1	N	N	1	0.231884057971014	4	0.662226773928044	1.05956283828487	1.05956283828487	0.662226773928044	1	-	-	0.60524179975777
109035	ACATGAGGGCCCAGCGGCCCGGTCCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCGGCTCCAGGGACCTGCCCACACCCTCTGGTGATCATGCTGAGCAGGCATCTTAGACAAAGCCACCCTCACACCACAGTGCAGCCCTGGACTTCTGGCCTACTTCCTTCTCCTCCAGCATGACTCTCTCTGGAAACCCAACATTTCAAAACTGCACATTTCATCTTCCCCTAGCACTAAAGTTCTGGCCTTGGCCCAGGATGGGGGAGCCCAGTGGGAGAAGGGC|AGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGT	1	0.00877658005689912	0.321839855309698	0.321669634186996	N	N	2.96531726382788	3.47911741325579	2.96531726382788	splitr	6	0	0.0588235294117647	0	N	0	N	N	6	0	ENSG00000163884	ENSG00000251948	-	+	3	19	126076285	24184165	utr3p	intron	KLF15	AC092279.1	126061478	24184075	-	-	0.0588235294117647	126062246	24184150	+	+	Y	-	1	N	SKBR3_13_2_1	5	1	3	1	1	1	N	N	0.5	1	2	0.44700307240143	0.521503584468335	0.521503584468335	0.44700307240143	2	-	0	0.60524179975777
135022	AGACAAAGTAGTAGAAGTAGCAGAGGAGGAAGAAGTGGCTGAGGTGGAAGAAGAAGAAGCCGATGATGACGAGGACGATGAGGATGGTGATGAGGTAGAGGAAGAGGCTGAGGAACCCTACGAAGAAGCCACAGAGAGAACCACCAGCATT|CCCCCCACCACCACCACCACCACCCCGCCGGCCGGCCCCAGGCCTCGA	1	0.343888941537837	0.375556752806067	0.399915574091196	N	N	3.29760136818559	2.17987369970039	2.17987369970039	splitr	36	0.416666666666666	0.416666666666666	0	N	0.416666666666666	N	N	8411	0	ENSG00000142192	ENSG00000227476	-	-	21	4	27543446	191000289	coding	utr5p	APP	DUX4L5	27252861	190998673	-	+	0.416666666666666	27394205	190998685	-	-	Y	1.10572987066389	1	N	SKBR3_13_2_1	12	0.948275862068966	11.3333333333333	10	3	1	N	N	0.676470588235294	0.948275862068966	3	0.860894806106457	0.480114411097832	0.860894806106457	0.480114411097832	1	184	0	0.60524179975777
3758	CCTGTCCTGAAACCACAGCACATCACTCTCATTCTTGCCTCAGTATTAGCTTCGTGAACTTTTGGTCATTTTCAGGTGCTGACTGTAATTATTCCCCTCCTCCCTACCCTCTCTGGACCTCTCCAAGCAAAACTAATTTTTCCATTCTGTGTTTGCTTTACATTTT|CAGCCTGGCCAACATGACGAAACCCTGTCTCCACTAAATATACAAAAAAAAATTAGCCAACCATGGTGGTGTATGCTTGTAGTTCTAGGTAGTTGAGTGGCTGAGCCGG	5	1	0.96744020512574	0.597125161312542	N	N	3.10236798095471	3.5580693557619	3.10236798095471	splitr	0	0	0	0	N	0	Y	N	1029	638	ENSG00000177570	ENSG00000172167	-	+	8	8	119634234	121554373	intron	intron	SAMD12	MTBP	119201698	121457640	-	+	0	119434616	121478670	-	+	N	0.4717687113993	1.78232037459201	N	SKBR3_13_2_1	3	1	1.5	1	1	1	N	N	0	1	4	0.960228822195664	0.844339136758256	0.960228822195664	0.844339136758256	3	4.25	8.5	0.60524179975777
77501	AAACCCATATAACCTCCCCCAAAATTCAGAATAATAACA|TTCACAGCCACAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACACCCTAGGCTCACTAAACATTCTACTACTCACT	1	1	0.800133926999915	0.844771979185218	N	N	2.92541040822723	3.40761403627413	2.92541040822723	splitr	6	0.153846153846154	0.153846153846154	0	N	0.205128205128205	Y	N	19641	93473	ENSG00000198695	ENSG00000198886	-	-	MT	MT	14673	12137	coding	coding	MT-ND6	MT-ND4	14149	10760	-	+	0.153846153846154	14554	11087	+	-	N	-	-	N	SKBR3_13_2_1	2	0	1.66666666666667	1	2	4	N	N	0	0	3	0.711893781972647	1.16717468904818	1.16717468904818	0.711893781972647	1	-	-	0.60524179975777
57729	CACGAGGTCAGGAGCTCGAGACCAGC|CTGGCCAACATGGCGAAACCCCATCTCTACTAAAAATACAAAAATCACCTGGGTGTGGTGGTGGGCACCTGTAATCCCAGCTACTAGGGAGACTGAGGCAGGAGAATTGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGACCGCGCC	1	0.0819678715386806	0.899266171301115	0.897571427984624	N	Y	3.26927507071071	3.3519080808638	3.26927507071071	splitr	179	0.615384615384615	0.807692307692307	0	N	0.807692307692307	N	N	336	366	ENSG00000162408	ENSG00000250899	-	-	1	12	6614595	3154116	utr3p	intron	NOL9	RP11-253E3.3	6581407	3150603	-	+	0.807692307692307	6582210	3153917	+	-	Y	-	-	N	SKBR3_13_2_1	3542	1	1828	114	2	1	N	N	1	1	2	0.794672128713653	0.827783467410055	0.827783467410055	0.794672128713653	3	-	-	0.60524179975777
84833	TTCGGGACTGCGCGGCTGGAGATATTGGGTGACAGGCGACGTGGGCTCCTCTCCCGCTTCCTCTCTTCCCAGGAGGCGGC|GGCTGGAGCTGCAGCAGAGAGAGCGGGAGGTGACAGGAAGTAGCCAGCAGACACTCTGGCGGCCCGAGGGCACCCAGAGCACGGCCACACTCCGCATCCTGGCCAGCATGCCCAGCCGCACCATTGGCCGCAGCCGAGGTGCCATCATCTCCCAGTACTACAACCGC	1	1	0.321839855309698	0.321669634186996	N	N	3.1018336146214	3.02398509990207	3.02398509990207	splitr	16	0.1125	0.1125	0	N	0.1125	N	N	4157	2346	ENSG00000154518	ENSG00000141524	-	-	2	17	176049335	76128488	utr5p	coding	ATP5G3	TMC6	176040986	76108999	-	-	0.1125	176046399	76122640	+	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.554614923164737	0.546337088490636	0.554614923164737	0.546337088490636	2	-	-	0.60524179975777
122532	AGCATACTTGAACCGATTCTGGATGGCTGAGGTGGTACAGATGAACTTGTAAAGGAGTTCTTTGCCCGTCTGCTCTGAAATTGCCTTGGCCGACATGGCTGCAGAGAGACCTGCTCTACCTGTC|ACGTATGCCTCATCCCTATTCGGAACTTTGCCTCCAACCCTCTTCCTGTTTTCTTGGCTGTCTTACAAGGGAGCCTTTTCAGGCAGCAACTCCAGAGAGAACCGCCAGAGCGTGCAACAGCAAACACTAACCAGCCCA	1	1	0.254583648908217	0.223418152789081	Y	Y	3.66016945000958	3.56807857436608	3.56807857436608	splitr	262	1	0	0	Y	1	N	N	11162	2	ENSG00000131473	ENSG00000204815	-	-	17	17	40075272	40117648	coding	upstream	ACLY	AC091172.1	40023161	40086898	-	+	0	40075133	40086612	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
121866	AGCCTAACCCAGAAGCAGGGGGGAATCCTGAATCGAGCTGAGAGGGCTTCCCCGGTTCTCCTGGGAACCCCATCGGCCCCCTGCCAGCACACACCTGAGCAG|TTTCCTGACTTTCTGAGAAGCCCTGGTTTCCCCAAAGAAGTGATTTCTGATAGAAATCTGAAGGTCATCTCCAAGAAAAAAGAGATCTAGTATAGTCAATGAATTAAAGACAAGAAGGTTTCCAATCAGTCCCTGCTATGTGGATATTTGGTAGCAATGACTGATGTGGAAACTACATATGCAGATTTTATTGCTTCAGGAAGAACAGGTAGAAGAAA	10	1	0.873090904936312	0.892224751691545	N	N	3.21063179870157	3.16406982599488	3.16406982599488	splitr	3	0.0294117647058825	0.0196078431372549	0	N	0.0588235294117646	N	Y	2153	245	ENSG00000131759	ENSG00000171033	+	-	17	8	38513895	79517502	utr5p	utr5p	RARA	PKIA	38465436	79428374	+	+	0	38465538	79485046	+	-	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	2	N	N	0	0	9	0.827783467410055	1.37412055590069	1.37412055590069	0.827783467410055	4	-	-	0.60524179975777
133210	ATTGCAGAGGATGTTCATAAGGCCAGTATGATTTATAAATGCAATCTCCCCTTGATTTAAACACACAGATACACACACA|CACACACACACACACACAAACCTTCTCTAATTTTATCATCTCTGTCTCTGT	12	0.0199094710779095	0.942772415116164	0.97945913575106	N	N	3.22738738262754	2.75760547768098	2.75760547768098	splitr	45	0	0.470588235294118	0.666666666666667	N	0.509803921568628	N	N	2778	0	ENSG00000110092	ENSG00000187005	+	-	11	21	69469242	32127746	utr3p	downstream	CCND1	KRTAP21-1	69455855	32127439	+	-	0.470588235294118	69467556	32124957	+	-	Y	-	-	N	SKBR3_13_2_1	10	0.826923076923077	4.33333333333333	1	2	1	N	N	0.378048780487805	0.826923076923077	3	0.678782443276245	0.430447403053228	0.678782443276245	0.430447403053228	1	-	-	0.60524179975777
64900	TGACGGCCTCCGTCTCCCTCACCAGGAGATCTGGGAACAGCCCGCTGCCCTCTTTGAGGACCTCTAAAATTGCATCCTGGATGGCCCTCTCTGGATCGTCAAGGTGAACCAGCAACTCTCGGTACAGGTACTGGACACTGCTCTGATAGTAGGATTTTGCG|CCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACATGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCATG	3	1	0.132735313386359	0.202367702280161	N	N	3.63655728995158	3.70144228268745	3.63655728995158	splitr	11	1.11022302462516e-16	1.11022302462516e-16	0	N	1.11022302462516e-16	N	N	1457	129759	ENSG00000164818	ENSG00000108298	-	-	7	17	829190	37360980	coding	coding	HEATR2	RPL19	766338	37356536	+	+	0	819684	37359315	-	-	Y	-	-	N	SKBR3_13_2_1	7	0	4	1	1	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
119225	TCGTCGTCGTCATCCTCGTCCTCATCATCCTCTTCTTCATCTTCATCCTCAGCCACGTTCTTGGCTTTCACAGGAACAACTTTTGCAGCTTTCTTTCCTTTGGCTGGTGTAGTCTCCATAGCTTCTTCTTCAGAGTCATCTTCCTCATCGTCATCGTCATCCTCATCATCTTCGTCATCCT|CATCATCCCCACCATCATAGCCATCATCACCCTCCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACACTACTCCCTATATCTAACAACGTAAAAATAAAATGACAGTTTGAACACACAAAAC	1	1	0.899266171301115	0.897571427984624	N	N	2.68566045345254	2.98142742519895	2.68566045345254	splitr	7	0.0291970802919708	0.0291970802919708	0	N	0.072992700729927	N	N	7868	0	ENSG00000115053	ENSG00000225630	-	-	2	1	232348352	566063	coding	intron	NCL	RP5-857K21.8	232318242	565020	-	+	0.0291970802919708	232326295	565847	+	-	Y	-	1	N	SKBR3_13_2_1	2	0.273584905660377	2	2	4	2	N	N	0.273584905660377	0	4	1.35756488655249	1.01817366491437	1.35756488655249	1.01817366491437	1	-	0	0.60524179975777
141386	GGCCTTTTTGCCAGCACCAACATTGGCCTTTGCAGTCCCCCTGACTTTCTTCATTCTGTTCTTGCGTTCCTTTCGTTGCTTTCTTGAGGTCTTTTTCTTCTCATACAGGCCATGTCTTGCAAGTCTATGTTTGGGTTCATTTTTCTTTGCATAATCCAGGGAATCATAAATCATGCCAAAGCCAGTTGTCTTGCCACCACCAAAATGAGTTCTGAATCCAAATACAAAGATGACATCCGGT|ACAGCAGCGCCCGCAGCACCCACCCCGCACCGGCGACTCCATCTTCATGGCCACCCCCTGCGGCGGACGGTTGACCACCAGCCACCACATCATCCCAGAGCTGAGCTCCTCCAGCGGGATGACGCCGTCCCCACCACCTCCCTCTTCTTCTTTTTCATCCTTCTGTCTCTTTGTTTCTGAGCTTTCCTGTCTTTCCTTTTTTCTGAGAGATTCAAAGCCTCCACGACTCTGTTTCCCCCGTCCCTTCTGAATTTAATTTGCACTAAGTCATTTGCACTGGTTGGAGTTGTGGAGACGGCCTTGAGTCTCAGTACGAGTGTGCGTGAGTGTGAGCC	1	7.30358378966734e-13	0.375556752806067	0.399915574091196	N	N	3.50744965188915	2.86228915294735	2.86228915294735	splitr	0	0	0	0	N	0.0248962655601659	N	N	25185	83603	ENSG00000138326	ENSG00000130600	-	+	10	11	79816570	2022700	coding	intron	RPS24	H19	79793518	2016406	+	-	0	79795352	2016971	-	+	Y	-	0.906363375595648	N	SKBR3_13_2_1	4	0	4	4	2	2	N	N	0	0	2	0.662226773928044	0.827783467410055	0.827783467410055	0.662226773928044	2	-	3051.5	0.60524179975777
116026	CAAGACACCAAGGACTTCCTCGTTCTGCCCATCTTCCTAACAAGGCTATGGCTGATAACAGCAGTGATGAGTGTGAAGAGGAAAATAACAAGGTCCTAAGGGAGGGCATGCCACAGGCTCCAGGCCACAGAGGCAAAGACATGGACCCTGTTCCACCTGCCCCTGCAAGTCTCAAGTGCCACCAGACCCCTTCTCATGTACTTGAGAGGGTGGGATGGTACAGAGAGAGCCAGAAGCACAGAAAGGAGAAGAAGAAGACCTCACAGTTGACACCTCAACGGGGCTTTAGTGAAAATGAGGATGACGATGATGATGATGA|AGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCTGCTGATGAAGATGATGACGATGATGATGAAGAGGATGATGATGAAGATGATGATGATGATGATTTTGATGATGAGGAAGCTGAAGAAAAAGCGCCAGTGAAGAAATCTATACGAGATACTCCAGCCAAA	2	2.41425305039819e-06	0.628320794780147	0.834131705711819	N	N	3.02125661295299	3.65657572715995	3.02125661295299	splitr	1	0	0.0756756756756757	0	N	0.0972972972972972	N	N	442	14119	ENSG00000118096	ENSG00000181163	+	-	11	5	118443685	170838141	coding	coding	IFT46	NPM1	118415243	170814120	-	+	0	118427687	170819783	-	-	Y	-	-	N	SKBR3_13_2_1	12	0.614035087719298	8.5	5	2	1	Y	N	0	0.614035087719298	2	0.827783467410055	0.471836576423731	0.827783467410055	0.471836576423731	1	-	-	0.60524179975777
135438	TATCAGGGGGCCGGGGAGTCCCAGGAGGGGTCCCAGGGGCTGGGCAAAGGTCTTCCGGAGAGCTGCTAAGATGAGGTGGAGACAGATCCAGCTCCATGGCGTCTGAGCAAGAGAGGGGCTTAACGGAACCAGTTGTGTGCCCTTGTCCTGGAG|CTGGCCAGTGCTGTGAAGGAGCAGTATCCGGGCATCGAGATCGAGTCGCGCCTCGGGGGCACAGGTGAGGCTCGCAGAACACCTGCTGGGTCAGTCTGTGCTCTGAATCCCAGCTCTCCCGCTTTCTAGTTCTGACATTGGCTGCTTTATGTAAAGTGCCCGCAGTGCCTGGCACATGGTAAAATGTCCGGCCAACATGAGTTCCCTTCCATAGGTC	9	1	0.940191867459734	0.520043729170862	Y	Y	3.61360747730288	3.61464054707278	3.61360747730288	splitr	370	0	0	0	Y	0.0457516339869281	N	N	4498	4549	ENSG00000141738	ENSG00000141741	-	+	17	17	37903545	37887040	utr5p	coding	GRB7	C17orf37	37894187	37885409	+	-	0	37894381	37886510	-	+	N	-	3.69091691421025	N	SKBR3_13_2_1	1	0.153153153153153	1	1	0	2	N	Y	0	0.153153153153153	23	1.27478653981148	1.83767929765032	1.83767929765032	1.27478653981148	3	-	59.9565217391304	0.60524179975777
63673	TACAAAAAATACAAAAATTAGCCAGGTGTGGTGGTGCACCTGTAGTCCCAGCTACTTGAGAGGCTGAGGTGGGAGGGTCACTTGAACCCAGGAGTCGGAGGTTACAGTGAGCCCTGATGGGCCACTGCACTCCAACCTGGGCAACGGAGCAAGACCCTGTCTAA|AAAAAAAAAAAAAAAAAAGAAAGAGAAGAAAGAAGTGATTCCTAC	1	0.248268296243169	0.526775457519482	0.600084425908804	N	Y	3.53039946453785	1.90131789750044	1.90131789750044	splitr	47	0.422222222222222	0.311111111111111	0	N	0.355555555555556	N	N	1384	97	ENSG00000142910	ENSG00000101846	-	-	1	X	32053288	7272851	utr3p	utr3p	TINAGL1	STS	32042116	7137497	+	+	0.0888888888888887	32052938	7269977	-	-	Y	-	-	N	SKBR3_13_2_1	1675	0.983695652173913	851.5	28	2	1	N	N	0.983695652173913	0.415094339622642	2	0.827783467410055	0.438725237727329	0.827783467410055	0.438725237727329	1	-	-	0.60524179975777
141109	CTGCAGTACTCGGCATTCCTCCACGCACTCCTGGCCCCGAAGGAACTGGCTGCAGTTGACACACTGGGTGGGCCCTGGACCCCAGCAGTGCCCTCGGGCGCACAGCTGGTGGCAGGCCAGGCCCTCGCCCACACACTCGTCCTCTGGCCGGTTGGCAGTGTGGAGCAGAG|CTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAAC	2	0.990669415545057	0.572228613671423	0.790699370883283	N	N	3.61823426992241	3.42254622194492	3.42254622194492	splitr	13	0.0874999999999998	0.0874999999999998	0	N	0.0874999999999998	N	N	74211	0	ENSG00000141736	ENSG00000252318	-	+	17	2	37884915	133038738	coding	intron	ERBB2	AC097532.1	37844393	133038647	+	-	0.0874999999999998	37872154	133038712	-	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.66666666666667	1	2	1	N	N	0	1	3	1.18373035839638	0.662226773928044	1.18373035839638	0.662226773928044	3	-	0	0.60524179975777
126906	CCCGCTGCTGCCAGCTACACCTCCGTTGCCCAGGCCCTGGGATCAAACCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTGGTTGCCCCTCGGTTCCCCACTTCCCCAGTT|TCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGACTTGGCGGAATCAGCGGGGAAAGAAGACTCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACGTGAGAGGTGTAGAATAAGTGGGA	1	1	0.375556752806067	0.399915574091196	N	N	3.05166433869594	3.38552945952599	3.05166433869594	splitr	4	0.0300751879699248	0.0300751879699248	0.5	N	0.0375939849624061	N	N	83603	0	ENSG00000130600	ENSG00000226958	-	-	11	X	2022700	108297792	intron	intron	H19	RN28S1	2016406	108297361	-	-	0.0300751879699248	2019030	108297532	+	-	Y	-	1	N	SKBR3_13_2_1	4	1	3.5	3	2	1	N	N	0	1	2	0.76156079001725	0.827783467410055	0.827783467410055	0.76156079001725	1	-	0	0.60524179975777
67663	AGAGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTTTG|GCCCCCCCGCCGCCGCGGCTTTTTGCCCCCCCGCCGCCGCGGCTTTTTGCCCCCCCGCCGCCGCGGCTTTTTGCCTCCGCGGCTTTTTACCCGCCGCGGCTTTTCGCCCCTCGCTGTCGCGACTTTTTGCACCACCCCCCCCGCCGCCGCGACTTTTTGCCCACCGCGGCTTTTTGCACCCCCGCCGCCCCGGGTTTTTGCCCCCCCCCCCCCCCGCCGCCGCTGCCATTTCTAGGCTAATAAAC	1	0.000124031085217797	0.261533274614987	0.233421673643755	N	N	3.38127338926705	2.06275329149928	2.06275329149928	splitr	14	0	0	0	N	0	N	N	5684	0	ENSG00000221983	ENSG00000213147	-	-	19	10	18688269	135516024	utr5p	upstream	UBA52	XXyac-YRM2136_A.1	18682614	135515571	+	+	0	18684106	42738917	-	-	Y	-	-	N	SKBR3_13_2_1	3	0.431372549019608	2.5	2	2	1	N	N	0	0.431372549019608	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	1	-	-	0.60524179975777
134899	ATAGAGGAAAGGGATGGTAAGTTGAGATGTTGTGTGGCAATGGGATTTGGGCTACCCTAAAGGGAGAAGGAAGGGCAGAGAATGGCTGGGTCAGGGCCAGACTGGAAGACACTTCAGATCTGAGGTTGGATTTGCTCATTGCTGTACCACATCTGCTCTAGGGAATCTGGATTATGTTATACAAGGCAA|AGATTTTTTTTTTTTTTTTTAAAGTATGTTTGGGTGTGCCAGATTAGAAT	1	0.94293961408239	0.899266171301115	0.897571427984624	N	N	3.6272104187567	2.4990240285939	2.4990240285939	splitr	27	0.42	0.42	0	N	0.42	N	N	2374	0	ENSG00000119699	ENSG00000163618	+	+	14	3	76448092	62861064	utr3p	intron	TGFB3	CADPS	76424442	62384021	-	-	0.42	76425067	62399584	-	+	Y	-	1	N	SKBR3_13_2_1	47	0.403846153846154	29.5	12	2	1	N	N	0	0.403846153846154	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	2	-	0	0.60524179975777
141223	TCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCACCATTTACCTGTGCTTCATTGAATTTCTTCAATTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAA|CACCCACCCCTGCCAGCAAGAGGGACTGTGTCAAGGGCAGTGCTACCCCCAGTGGGCAGGAGAGCCGCACAGCCCCCGGAGAAGCCCGCAAGGCGGCCACACTGCCAGAGATGAGCGCAGGTGAGGAGAGTAGCAGCTCGGACTCCGACCCCGACTCCGCCTCGCCGCCCAGCACTGGACAGAACCCGTCAGTGTCCGTTCAGACCAGCCAGGACTGGAAGCCCACCCGCAGCCTCATCGAGCACGTATTTGTCACCGACGTCACTGCCAACCTCATCACCGTCACAGTGAAGGAGTCTCCCACCAGCGTGGGCTTCTTCAACCTGAGGCATTACTGAAGCCCCGGCG	1	1.20326453726768e-09	0.375556752806067	0.399915574091196	N	N	3.49061436237648	3.22064101730576	3.22064101730576	splitr	8	0	0	0	N	0	N	N	0	4562	ENSG00000137571	ENSG00000173894	+	-	8	17	70747299	77761449	intron	coding	SLCO5A1	CBX2	70584568	77751977	-	+	0	70602599	77758504	+	-	Y	1	0.579133580176476	N	SKBR3_13_2_1	6	1	5	4	2	1	N	N	1	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	0	81	0.60524179975777
57837	TTCTCATCCAAACCCCCTGAAGCTTCACCGGCGCAGTCATTCTCATAATCGCCCACGGGCTTACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTACGAACGCACTCACAGTCGCATCATAA|TCACTCTCTCAATCTTATCCATCATAGCAGGCAGTTGAGGTGGATTAAACCAAACCCAGCTACGCAAAATCTTAGCATACTCCTCAATTACCCACATAGGATGAATAATAGCAGTTCTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTATCCTAACTACTACCGCATTCCTACTACTCAACTTAAACTCCAGCACCACGACCCTACTACTATCTCGCACCTGAAAC	1	0.020346719728173	0.311204357582937	0.306030290211129	N	N	3.23420410596622	3.56331864299737	3.23420410596622	splitr	12	1.11022302462516e-16	1.11022302462516e-16	0	N	0.0714285714285713	Y	N	93473	24767	ENSG00000198886	ENSG00000198763	+	-	MT	MT	12137	5511	coding	coding	MT-ND4	MT-ND2	10760	4470	+	+	1.11022302462516e-16	11786	4933	+	-	N	-	-	N	SKBR3_13_2_1	4	0	3	2	2	4	Y	N	0	0	2	0.637393269905742	0.827783467410055	0.827783467410055	0.637393269905742	1	-	-	0.60524179975777
109890	CGCATCCCCCTTCCAAACAACAATCCCCCTCTACCTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTCTAACAGCCCTAGACCTCAACTACCTAACCAACAAACTTAAAATAAAATCCCCACTATGCACATTTTATTTCTCCAACATACTCGGATTCTACCCTAGCATCACACACCGCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACCTCCATCATCACCTCAACCCAAAAAGGCATAATTAAACTTTAC|CTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCACAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCTT	1	3.32610046603516e-26	0.311204357582937	0.306030290211129	N	N	3.10447397328784	3.22593015733458	3.10447397328784	splitr	8	0.0161812297734628	0.0161812297734628	0	N	0.0161812297734628	Y	N	54817	38194	ENSG00000198786	ENSG00000198899	+	-	MT	MT	14148	9207	coding	coding	MT-ND5	MT-ATP6	12337	8527	+	+	0.0161812297734628	14097	8776	+	-	N	-	-	N	SKBR3_13_2_1	3	0	2	1	5	6	Y	N	0	0	6	1.41550972927119	1.29962004383379	1.41550972927119	1.29962004383379	3	-	-	0.60524179975777
64047	AAGAGAACTCTCCCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCACG|TTACCGCACTGGACGCCTCATGGTGCCCATCTCCGCCATTCTGGATTCGGGGATCTGAACCCAACTCCCTTTCAATCAGCTGAGGGCAACAGAGGACATCACCCATCCCTTCGGAATGGCACTCACCCATCTCTCAGGACCAAATGAACCATGTTCAACTGCTGTTCACCTGGGACCCATGTTCAACTGCTGTTCACATGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAAAATTTGCTACTACCACCAAGATCTGCACCTGTGGC	3573	0.0190488510315451	0.05855282224594	0.262705234202299	N	Y	3.02552203078174	3.60785432895764	3.02552203078174	splitr	324	0	0	0.380487804878049	N	0	N	N	0	0	ENSG00000239935	ENSG00000252318	-	-	5	2	71146942	133038738	intron	downstream	AC116340.1	AC097532.1	71146740	133038647	+	-	0.816326530612245	71146755	133038453	-	-	Y	1	-	N	SKBR3_13_2_1	3	1	1.61951219512195	1	126	1	N	N	0.628571428571429	1	205	0.579448427187038	0.844339136758256	0.844339136758256	0.579448427187038	1	0	-	0.60524179975777
90116	CTTCGTCTACCTCATTGTCAGCCTCCTGCTCCCCATTTTCCTCATTAGCATTCCCGTTAGCAGGGGCGTCTCTTCCATTTTCTGCCTCTTCCACAACTTCCTTCTTCTCCTTTAAGTCCTTGGTGGTGATTT|CGTCCTGCGCGGTTGTTCTCTGGAGCAGCGTTCTTTTATCTCCGTCCGCCTTCTCTCCTACCTAAGTGCGTGCCGCCACCCGATGGAAGATTCGATGGACATGGACATGAGCCCCCTGAGG	1	1	0.704121951840997	0.776581847210919	N	Y	3.40169305405954	3.50951579142893	3.40169305405954	splitr	18	0	0.0165289256198349	0	N	0.0330578512396694	N	N	14698	14119	ENSG00000187514	ENSG00000181163	-	-	2	5	232578251	170838141	coding	utr5p	PTMA	NPM1	232571605	170814120	+	+	0	232573448	170814871	-	-	Y	-	0.0173437896725327	N	SKBR3_13_2_1	64	0.0531914893617021	29.8333333333333	6	6	1	N	N	0.0531914893617021	0	6	0.778116459365451	1.00989583024027	1.00989583024027	0.778116459365451	2	-	82.8333333333333	0.60524179975777
139239	TTTTTTTTTGTGGGAACAAAACAATAAACACCTTTATTACATGGGTGAAGACAAAACAAGGATTTATTTGCCTTTGCGGGCCTTGATTTTCCTAAGATAGAACTCCAACTCTTTGCCCTCTAGCACATAGCCATCTGCTCGGCCACACTGTCCCGGCCTTGAAGCGATGCACGCAAGAAGCTTGCCCTGCTGGAACTGCTCCTCCAGGAGACTGCTGATTTTGGCATTCTTTTTCCTTTCATCATATTTCTTCT|TCACCGTGCCAGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCCTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTC	1	3.62091739368667e-05	0.447538936456759	0.5	N	N	2.82614697399878	3.56761456604966	2.82614697399878	splitr	3	0	0	0	N	0.050561797752809	N	N	19855	0	ENSG00000142937	ENSG00000226958	-	+	1	X	45244451	108297792	coding	intron	RPS8	RN28S1	45240923	108297361	+	-	0	45243721	108297634	-	+	Y	-	1	N	SKBR3_13_2_1	30	1	23	16	2	1	N	N	0	1	2	0.678782443276245	0.827783467410055	0.827783467410055	0.678782443276245	2	-	0	0.60524179975777
119249	TAGTTTCCTATGACCATGGTCTCGTCCGGGATCTCCTCAATAAAGCACTTCTTCTCCGTCTCTCCGATGTGAAAGTAGAGCGCGCTTCCGCGCGTCGCCAGCCACAGCACCAGCAGGAGGGTCCGCATCACTCTACCCAGCCCGGTTCCGGGCCGGGGCCGGACGAGCAGCACGCCCAGCTCCACAGCCATCTTG|CTCCACCTCAATCACACTACTCCCTATATCTAACAACGTAAAAATAAAATGACAGTTTGAACACACAAAACCCACCCCATTCCTCCCCACACTCA	2	1	0.419771231117896	0.626856592055952	N	N	3.35975787397237	3.09569616354643	3.09569616354643	splitr	8	0.0842105263157893	0.0842105263157893	0	N	0.094736842105263	N	N	2156	0	ENSG00000184840	ENSG00000225630	-	-	5	1	177023125	566063	utr5p	intron	TMED9	RP5-857K21.8	177019159	565020	+	+	0.0842105263157893	177019212	565913	-	-	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	0	0.60524179975777
49957	GAGGTTAGTTGTGGCAATAAAAATGATTAAGGATACTAGTATAAGAGATCAGGTTCGTCCTTTAGTGTTGTGTATGGTTATCATTTGTTTTGAG|TTTAGTATTGATTGTTAGCGGTGTGGTCGGGTGTGTTATTATTCTGAATTTTGGGGGAGGTTATATGGGTTTAATAGTTTTTTTAATTTATTTAGGGGGAATGATGGTTGTCTTTGGATATACTACAGCGATGGCTATTGAGGAGTATCCTGAGGCATGGGGGTCAGGGGTTGAGGTCTTGGTGAGTGTTTTAGTGGGGTTAGCGATGGAGGT	1	0.161560401093047	0.447538936456759	0.5	N	N	3.16253289511522	3.05206556628006	3.05206556628006	splitr	14	0.0106382978723403	0.0106382978723403	0	N	0.0106382978723403	Y	N	38194	19641	ENSG00000198899	ENSG00000198695	-	-	MT	MT	9207	14673	coding	coding	MT-ATP6	MT-ND6	8527	14149	+	-	0.0106382978723403	8685	14587	-	+	N	-	-	N	SKBR3_13_2_1	4	0	2.75	1	3	2	N	N	0	0	4	1.28306437448558	0.927117483499261	1.28306437448558	0.927117483499261	3	-	-	0.60524179975777
137410	CTCGCCGCCCGCTGCGCTCCTCACCCCTGCCTGCACCATCCTCCCTCCTGAGAGCTCATTCACTCCGCCCCGCCCGCCTC|CTGCGCCGCCCCTTCCGAGGCTAAATCGGCTGCGTTCCTCTCGGAACGCGCCGCAGAAGGGGTCCTGGTGACGAGTCCCGCGTTCTCTCCTTGAATCCACTCGCCAGCCCGCCGCCCTCTGCCGCCGCACCCTGCACACCCGCCC	2	0.95156169173627	1	0.0978048625560518	N	N	3.09868097214924	3.36464578641707	3.09868097214924	splitr	17	0.1875	0.1875	0	N	0.1875	N	N	83603	37145	ENSG00000130600	ENSG00000149925	+	-	11	16	2022700	30081741	intron	utr5p	H19	ALDOA	2016406	30064444	-	+	0.1875	2017924	30077090	+	-	Y	0.714684955522636	0.00219925189365421	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.413891733705027	0.827783467410055	0.827783467410055	0.413891733705027	1	2096	83.5	0.60524179975777
70758	CAGCTCATGAGTGTAAGACGTCTTGTGATGTAATTATTATACGAATGGGGGCTTCAACCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCAGGTCGCCTGGTTCTAGGAAT|AATGTAGGTAAAGGAAGTCCTCAAGCCGGATCCATAACTTCGGGATAAGTATTGGCTGTAAGGGCTGGGTC	3	0.119894365958451	0.672179231214042	0.451731126833041	N	N	3.76017289949394	3.76170048280379	3.76017289949394	splitr	9	0.0563380281690141	0.028169014084507	0	N	0.169014084507042	N	N	3	0	ENSG00000230021	ENSG00000252318	-	+	1	2	659930	133038738	intron	downstream	RP5-857K21.4	AC097532.1	536816	133038647	-	-	0.0563380281690141	568514	133038199	-	+	Y	0.828962371721779	-	N	SKBR3_13_2_1	6	1	4.25	2	4	3	N	N	0	1	4	1.04300716893667	0.869172640780558	1.04300716893667	0.869172640780558	3	0	-	0.60524179975777
135473	CCTCCAGACGCGGTTCCGCCCCCGGTCCCGGCTCCGCTTCCCGCCGCCGCCGCTGCCCCCTGTGTCGCCGCCACCATGGCTCCCTCCTGCTCGCCCGCCGAGCCGCCTACCGCCGCCGTTGCCGC|CGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATTACCACCCAACAATGACTAATCCAACTAACCTCAAAACAAATGATAGCCATACACAACACTAAGGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCC	1	0.669400329299965	0.612610548302747	0.693969709788871	N	N	2.89824991765744	3.34000055658918	2.89824991765744	splitr	7	0.0320000000000001	1.11022302462516e-16	0	N	0.0559999999999999	N	N	3280	3	ENSG00000138668	ENSG00000230021	-	-	4	1	83295656	659930	coding	intron	HNRNPD	RP5-857K21.4	83273651	536816	-	-	0.0320000000000001	83294792	569132	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	3	0.916666666666667	2.5	2	2	1	N	N	0.916666666666667	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
19953	CCGTTGTCTTTGAGACGGAGAAGTTGCAAATGGAGCAACAGCAGCAACTGCAGCAGCGGCAGATACTTCTAGGACCTAACACAGGGCTCTCAGGAGGAATGCCAGGGGCTCTACCCTCACTTCCTGGAAAGATCTAGATTGTTATTGCTGTTTGAGCTGTCTCAGTGGGATAAGTTTGAAATTCAAGTGTTTGAACTGCTGATAATTTGGA|TTTTTTTTTTTTTTAACTTTGGCTAGTTCTCACTCTCCAGCAGCTTTA	7	1	0.476111906422609	0.881527494047392	N	Y	3.29127915838687	2.89727962861985	2.89727962861985	splitr	23	0.479166666666667	0.479166666666667	0	N	0.479166666666667	N	N	1435	0	ENSG00000100216	ENSG00000231329	+	-	22	6	39080818	139560442	utr3p	intron	TOMM22	RP1-225E12.2	39077953	139480299	+	-	0.479166666666667	39079920	139489566	+	-	Y	-	1	N	SKBR3_13_2_1	28	1	16.75	2	4	1	N	N	0	1	4	1.28306437448558	0.430447403053228	1.28306437448558	0.430447403053228	2	-	0	0.60524179975777
135313	GTGATGGAGCAGATCACACTGGCTTACAAGGAGCAGTCAGGGCCGTCACCTCTGGAGGAAACAAGGGCTCTGCTGGGAACAGTGAATGGTGGGCCGCAGCATTGGCATGATGGGCCAGGGGTCCC|ACAGGCCCAAAAACTGCGACTGGCATACACAAGGAGCTCTCATTATGGTGGGTCTCTGCCCAATGTTAACCAGATTGGCTCTGGCCTGGCCGAGTTCCAGAGCCCCCTCCACTCACCTTTGGATTCATCTCGGAGCACTCGGCACCATGGGCTGGTGGAACGGGTGCAGCGAGATCCTCGAAGAATGGTGTCC	1	1	1	0.935920242646516	Y	Y	3.11551626166191	3.40488554932505	3.11551626166191	splitr	318	1	0	0	Y	0.8	N	N	4895	781	ENSG00000143570	ENSG00000160741	+	-	1	1	153940188	153931101	coding	coding	SLC39A1	CRTC2	153931575	153920145	-	-	0	153933052	153927640	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	2	Y	Y	0	0	4	0.943673152847462	1.5313994147086	1.5313994147086	0.943673152847462	1	-	-	0.60524179975777
129675	CTGGCTCCCCCTTCTTTCCAGCCCTAGCTCAGGCCCATCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCA|CCAGCCCCCTTCGCCCCGAGAGGGCCCTCTGCCTGCTGCCCGACCTGCTGGTGCCACTCTGGAAAGGCCCAAGACTCTCTCCCCAGGGAAGAATGGGGTCGTCAAAGACGTTTTTGCCTTTGGGGGTGCCGTGGAGAACCCCGAGTACTTGACACCCCAGGGAGGAGCTGCCCCTCAGCCCCACCCTCCTCCTGCCTTCAGCCCA	1	1	0.321839855309698	0.321669634186996	N	N	3.13271292596536	2.89934576815964	2.89934576815964	splitr	7	1.11022302462516e-16	1.11022302462516e-16	0	N	1.11022302462516e-16	N	N	83603	74211	ENSG00000130600	ENSG00000141736	-	-	11	17	2022700	37884915	intron	coding	H19	ERBB2	2016406	37844393	-	+	1.11022302462516e-16	2018887	37883970	+	-	Y	-	0.862921248589408	N	SKBR3_13_2_1	1	0	1	1	0	3	N	N	0	0	2	0.45528090707553	0.827783467410055	0.827783467410055	0.45528090707553	2	-	1577.5	0.60524179975777
131162	TGTTTTATTTTAATGGCTGATCTATGTAATCACAGAGGCCAGTATGTACAGACAAAGTGGGAGGTTTTATTTCTTGGTCTCTTCCTCCTTGGATAAAGTCTTGATGATCTCCTCCTTCTTGGCCTGGAGGCGCTCTTCACGGCGCTTGCGTGCTTCCTTGGTCTTAGACCTGCGGGCCTCAGCCTGGTCAGCCAGGAGCTTCTTGCGGGCCTTGTCTGCCTTCAGCTTGTGGATGTGTTCCATGAGAATCCGCTTGTTTTTGAACACATTCCCCTT|CACCCGTGGTCACCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACG	1	0.0492899439736274	1	0.935920242646516	N	N	3.46128890676658	3.59272380419397	3.46128890676658	splitr	13	0.0689655172413791	0.0689655172413791	0	N	0.0689655172413791	N	N	129759	0	ENSG00000108298	ENSG00000212932	-	+	17	21	37360980	48111157	coding	upstream	RPL19	RPL23AP4	37356536	48110676	+	+	0.0689655172413791	37360355	9827411	-	+	Y	-	-	N	SKBR3_13_2_1	18	1	10.5	3	2	3	N	N	0	1	2	0.827783467410055	0.819505632735954	0.827783467410055	0.819505632735954	1	-	-	0.60524179975777
68545	TGGCTTGGTCCACAAAATGGAGAAATGGGGCCATGGAAGAGTAGATGTGAAGTGGCAGGATCCAGAGGCACAAGGAGGCAGTATACTGTGCCACTGATTTACATGGTCTGGGGGGTAAAGAGGCTGGAGAGCT|TGTGGGAGCCAAGGAGCACCTTGGACATCTGGAGTCTGGCAGGATTGCAGCAGGACGTCACCAGGAGGGCGAAGCGGCCACGGGAGGGGGGCCCCGGGACATTGCGCAGCAAG	1	0.490898777876779	0.254583648908217	0.223418152789081	N	N	3.31998211938081	3.57336771439491	3.31998211938081	splitr	8	0	0	0	N	0.0176991150442479	N	N	783	83603	ENSG00000100461	ENSG00000130600	-	-	14	11	23388396	2022700	coding	intron	RBM23	H19	23369855	2016406	-	-	0	23371053	2018970	+	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
48929	GGTTAAGGCGTTGGACTTAAGATCCAATGGACAGGTGTCCGCGTGGGTTCGAGCCCCACTCCCGGTAAGCGTTGGTGTGTACTTTGACGTTTGCGGTTTCTGCCGCAGAGTTGGAAGCCAGGTATGCTT|TCAAAAAAAAAAAAAAAAAAACTAATATAGCTTATTATTATGCCATATTTATTT	1	0.419085444591636	0.800133926999915	0.844771979185218	N	N	3.60103760561896	2.43790059257701	2.43790059257701	splitr	0	0	0	0	N	0.351851851851852	N	N	0	0	ENSG00000219814	ENSG00000231419	-	+	6	7	171055065	158822886	upstream	intron	XX-C2158C6.2	AC004863.6	171054606	158799213	+	+	0.222222222222222	27198272	158814360	-	+	Y	-	1	N	SKBR3_13_2_1	84	0.814814814814815	76	68	2	1	N	N	0.696629213483146	0.814814814814815	2	0.736727285994949	0.44700307240143	0.736727285994949	0.44700307240143	1	-	0	0.60524179975777
126500	CTGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCT|GCCGCGGACTCCACCGCGGGTTTT	879	0.00781587503070472	0.065469125785726	0.29740422373581	N	N	3.47911741325579	3.10804461186393	3.10804461186393	splitr	0	0	0	0	N	0.666666666666667	N	N	0	129	ENSG00000251948	ENSG00000163697	+	+	19	4	24184165	41218731	intron	intron	AC092279.1	APBB2	24184075	40812044	-	-	0.333333333333333	24184150	41218433	+	+	Y	1	2.01065496709495	N	SKBR3_13_2_1	22	1	16	10	2	1	N	N	1	0.549019607843137	2	0.422169568379128	0.422169568379128	0.422169568379128	0.422169568379128	1	0	0	0.60524179975777
137223	TAAATTCAGAAGGGACGGGGGAAACAGAGTCGTGGAGGCT|GAATGTTTGCACCAACCAAAACCTGGCGCCGTTGGCATCGTAGAGTGAACACAACCCAAAAACGATACGCCATCTGTTCTGCCCTGGCTGCCTCAGCCCTACCAGCACTGGTCATGTC	1	0.177175144456066	0.800133926999915	0.844771979185218	N	N	3.33640683373955	3.53974633573272	3.33640683373955	splitr	21	0.425	0.475	0	N	0.525	N	N	83603	21672	ENSG00000130600	ENSG00000174444	-	+	11	15	2022700	66797221	intron	coding	H19	RPL4	2016406	66790801	-	-	0.425	2016756	66795072	+	+	Y	-	0.636164182101411	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.538059253816536	0.629115435231642	0.629115435231642	0.538059253816536	2	-	1514	0.60524179975777
69091	AGATGATATTTGAATTTGACTTTTTTTTTTCTTTTTGGAGACACAGCCTGTCTTTTTCACCCAGGCTGGAGTGCAGCAGCACAATCTCGGCTCACTGCAACCTCCACTTCCTGGGTTCAAGCGATTCTTCTGCCTCAA|CCTCCTGAGTAGCTGGGACTACAGGTGCCCACCACCACGCCCGGCTAATTTTTTGTATTTTTAGTA	2	0.310689151653693	1	0.834131705711819	N	Y	3.5465630590714	3.43784458057793	3.43784458057793	splitr	204	0.5	0.363636363636364	1	N	0.439393939393939	N	N	51	96	ENSG00000152213	ENSG00000169570	-	-	13	5	50208008	118324240	intron	utr3p	ARL11	DTWD2	50202435	118173017	+	-	0	50205872	118174755	-	+	Y	-	-	N	SKBR3_13_2_1	1484	1	758.5	33	2	1	N	N	0.875	1	2	0.827783467410055	0.629115435231642	0.827783467410055	0.629115435231642	2	-	-	0.60524179975777
82906	ACCAGCCTGACCAATATGATGAAACCCCGTCTCTAAAAAAATACAAAAATTAGCCGGGCGTGGTGTCAGGCACCTGTAATCCCAGCTACTCAGGAAGCAGAGGTTGCAGTGAGCTGAGATCGGGCCATTGCACTCCAGCCTGGGCAAAAAGAGTGAAACTCTGTCTCAAG|AAAAAAAAAAAAAATGAAATCCTGGTTGCCATTTACCTGTGAGCTTT	3	0.613719197459347	0.672179231214042	0.908925693435289	N	Y	3.24678332521996	2.9830177892411	2.9830177892411	splitr	217	0.574468085106383	0	0	N	0.446808510638298	N	N	914	0	ENSG00000177302	ENSG00000234948	-	+	17	20	18218288	51266970	intron	intron	TOP3A	RP4-723E3.1	18174742	50827184	-	+	0.468085106382979	18176016	51006985	-	+	Y	0.236882749330617	1	N	SKBR3_13_2_1	1296	1	703.5	111	2	1	N	N	1	0.81132075471698	2	0.827783467410055	0.438725237727329	0.827783467410055	0.438725237727329	2	0.5	0	0.60524179975777
141242	CCCTCCAAAGCCTCCCCGGCCTCTGCCACCAAATCCTCCTCGGCCTCCTCTACCACCACCTCGTCCTCCAAAGCCGCCTCTGCCTCCACCACGACCCCCGAAGCCACCTTCACCCT|CCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACACTACTCCCTATATCTAACAACGTAAAAATAAAATGACAGTTTGAACACACAAAACCCAC	1	1	0.163782765099475	0.102428735043176	N	N	3.07105093371854	3.20185398896016	3.07105093371854	splitr	15	0.0277777777777778	0.0277777777777778	0	N	0.12037037037037	N	N	7868	0	ENSG00000115053	ENSG00000225630	-	-	2	1	232348352	566063	coding	intron	NCL	RP5-857K21.8	232318242	565020	-	+	0.0277777777777778	232320225	565880	+	-	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	3	2	N	N	0	0	3	0.794672128713653	0.869172640780558	0.869172640780558	0.794672128713653	1	-	0	0.60524179975777
19671	GGATTACAGGTATGAGCCACCACACCCAGCCAGGCTCAGGTTCCTAATGTTGGTTATCCATCTATGAGTACCAACATGCAGCAGTGGTAATTATATTAAAACTTACTATAATTTTAATTAATCTTTTGTTTTTGTTTTTGTTT|AAGACAAAGTAGTCCTGTAATACCTGTCCAAAGTGTCTGGCCCTAAGATGGTGGGAAAATCATGCCACTATTGAATACATATGCTGTCACCTACCCATCTCCACCTGTAGCAGACATCACTCATCTGTCATAATATTTTTTCTGGTCGAGCACAAATTTAGCCTCAGCATCTTTCTC	1	0.519815577677938	0.447538936456759	0.5	N	N	2.565109924969	3.41103992525442	2.565109924969	splitr	0	0	0	0	Y	0	N	N	0	0	ENSG00000253143	ENSG00000244833	+	-	8	8	71392858	81864554	intron	intron	RP11-333A23.3	AC012533.1	71383347	81806189	-	+	0	71386368	81845413	+	-	N	1	1	N	SKBR3_13_2_1	1	0.765151515151515	1	1	0	1	N	N	0.275	0.765151515151515	4	0.993340160892066	0.976784491543865	0.993340160892066	0.976784491543865	2	0	0	0.60524179975777
141696	CCCGGTCTATCTCCCTGTCAAACTCTGTCCGGATGTCTTCTAATGATCCATCGTCTCCAAAGGCTCCCCATTCTGTATTGATACACATCCTCCCCTCGTCTCCTTCCACCAGATCAATGTGCCTCAGTTCCTCCATGTAGCAAGCATTGGTGCCAGTGCCG|CGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCCTAGTTGGATCTTGGGAGCGGG	2	0.599860150460379	0.090872521272258	0.073683062046673	N	N	3.59375687396386	3.64656650855576	3.59375687396386	splitr	14	0	0	0.333333333333333	N	0	N	N	10421	1	ENSG00000156515	ENSG00000256642	-	-	10	16	71161638	33962503	coding	upstream	HK1	NCRNA00273	71029740	33961052	+	-	0	71129091	33963122	-	-	Y	-	-	N	SKBR3_13_2_1	2	1	2	2	3	1	N	N	0	1	3	1.09267417698127	0.703615947298547	1.09267417698127	0.703615947298547	2	-	-	0.60524179975777
140300	CTTTTGTGCATTTTTGGCTGGAGTATCTCGTATAGATTTCTTCACTGGCGCTTTTTCTTCAGCTTCCTCATCATCAAAATCATCATCATCATCATCTTCATCATCATCCTCTTCATCATCATCGTCATCATCTTCATCAGCAGCAAGTTTTACTTTTTTCTGTGGAACCTTGCTACCACCTCCAGGGGCAGACCGCTTTCCAGATATACTTAAGAGTTTCACATCCTCCTCCTCTTCATC|CTTCTTCATCTTCTTCATCTTCCTCCTCCTCCTCATCCTCTTCATCTTCCTCATCTTCCTCCTCTTCCTTCTTTTTCTTGCTTTTTTCAGCCTTGACAACTCCCTTTTTTGCTGCATCAGGCTTTCCTTTAGCTCGATATGCAGCAATATCCTTTTCGTATTTTTCCTTCAGCTTCGCAGCCTTCTTTTCATAAGGCTGCTTGTCATCTGCAGCAGTGTTATTCCACATCTCTCCCAGTTTCTTCGCAACATCACCAATGG	4	3.30589864982647e-07	0.0644924761294986	0.085774135485936	N	N	3.3478104969044	2.36093931532614	2.36093931532614	splitr	21	0.0875	0.0833333333333335	0	N	0.133333333333333	N	N	14119	885	ENSG00000181163	ENSG00000253876	-	+	5	3	170838141	22597727	coding	utr3p	NPM1	AC121253.1	170814120	22423205	+	+	0.0875	170819740	22423931	-	+	Y	-	52.7704142011834	N	SKBR3_13_2_1	99	0.39	77.5	56	2	1	Y	N	0.39	0.037037037037037	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	4.5	0.60524179975777
25689	ATTTTTAATCTTAGAGCGAAAGCCTATAATCACTGCGCCCGCTCATAAGGGGATGGCCATGGCTAGGTTTATAGATAGTTGGGTGGTTGGTGTAAATGAGTGAGGCAGGAGTCCGAGGAGGTTAGTTGTGGCAATAAAAATGATTAAGGATACTAGTATAAGAGATCAGGTTCGTCCCTTAGTGTTGTGTATGGCTATCATTTGTTTTGAGGTTAGTTGGATTAGTCATTGTTGGGTGGTAATTAGTCGGTTGTTGATGAGATATTTGGAGGTGGGGATCA|ATAGATGGGTGGATGCATGGATGCATGGATGGATGGATGAACGGATGGATGGATGGATGGATAAGTAGGTGGATGGGCGGATAGATAGGTAGGTGGATAGGTGGATGGATGGGCAGATAAGGTGGTAGGTGGGTCAATGGATGGATGGGTGGGTGAGTGGATAGGTGGATGGATGGATGCATGGATGGATGGATGGATAGATAGATAAGTGGATGGGTGGATAGATGGATAGATGTCTGAG	1	2.51191660398273e-09	0.447538936456759	0.5	N	N	3.18888288969211	2.68270191877112	2.68270191877112	splitr	5	0.0207468879668049	0	0	N	0.0373443983402489	N	N	3	4023	ENSG00000230021	ENSG00000115648	-	-	1	2	659930	238463961	intron	intron	RP5-857K21.4	MLPH	536816	238394071	-	+	0.0207468879668049	569164	238425914	-	-	Y	0.828962371721779	0.738785741655192	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.827783467410055	0.819505632735954	0.827783467410055	0.819505632735954	2	0	120	0.60524179975777
127720	CTGTGCCGTTGGTCCTGTGCGGTCACTTAGCCAAGATGCCTGAGGAAACCCAGACCCAAGACCAACCGATGGAGGAGGAGGAGGTTGAGACGTTCGCCTTTCAGGCAGAAATTGCCCAGTTGATGTCATTGATCATCAATACTTTCT|CCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGAAATAAAACCTCCCACTTTGTCTGTACATACTGGCCT	2	1	0.196734923242299	0.258789252325421	N	N	3.38486711211668	3.39011639935216	3.38486711211668	splitr	0	0	0	0	N	0	N	N	26619	129759	ENSG00000080824	ENSG00000108298	+	-	14	17	102606086	37360980	coding	coding	HSP90AA1	RPL19	102547073	37356536	-	+	0	102552604	37360807	-	-	Y	-	0.960464421998991	N	SKBR3_13_2_1	6	0	5	4	2	1	Y	N	0	0	2	0.827783467410055	0.44700307240143	0.827783467410055	0.44700307240143	1	-	22252	0.60524179975777
64851	TGCGATCCTTTTGAGATTGGGAATACAAAGGATAAAATTAAAACACCTACAGTATTTTGCAAAATCTTTCTGAAAATCCGTCCTGGCATTAACAAAAGCGCATCCTCTCTCGGTTCCGACGACAAACACGTCTGTTTCGTACACTGCGATGCAGGCCACTTCTGCCTTGGACTTGGCCAGTTCTTTACA|TTCCCAGATGGGGTGGCTGCCGGGCGGAGAGGCTCCTCACTTCTCAGACGGGGCGGCTGCCGGGCGGAGGGGCTCCTCACTTCTCAGACGGGGTGGTTGCCAGGCAGAGGGTCTCCTCACTTCTCAGACGGGGCGGCCGGGCAGAGACGCTCCTCACCTCCCAGACGGGGTCTCGGCCGGGCAGAGGCGCTCCTCACATC	15	1	0.644957919773424	0.74889447410988	N	Y	3.47080361183081	3.44193281696752	3.44193281696752	splitr	389	0.984126984126984	0	0	N	0.978835978835979	N	N	134	220	ENSG00000196275	ENSG00000231560	-	-	7	12	74267847	10105935	coding	intron	GTF2IRD2	AC091814.3	74210483	10100736	-	-	0.0105820105820106	74248066	10105636	+	+	Y	-	-	N	SKBR3_13_2_1	45	1	16.0714285714286	3	28	1	N	N	0	1	28	1.39895405992299	1.65556693482011	1.65556693482011	1.39895405992299	4	-	-	0.60524179975777
5373	CCTCTCATGTCTCTTCACCATGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGG|GACAGTGCCAGGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAG	1	0.768542331074316	0.899266171301115	0.897571427984624	N	N	3.38552945952599	3.28296535696188	3.28296535696188	splitr	9	0.0173913043478261	0	0.416666666666667	N	0.373913043478261	N	N	0	0	ENSG00000137571	ENSG00000162669	+	+	8	1	70747299	91870426	intron	intron	SLCO5A1	HFM1	70584568	91726323	-	-	0.0173913043478261	70602436	91853142	+	+	Y	1	1	N	SKBR3_13_2_1	8	1	4	2	12	1	N	N	1	1	12	1.40723189459709	1.66384476949421	1.66384476949421	1.40723189459709	2	0	0	0.60524179975777
132737	CTCCAGCAGTGCGGGTCCTGGGCTCCTGAAGGCTTATTCCATCCGGACCGCATCCGCCAGTCGCAGGAGTGCCCGCGACTGAGCCGCCTCCCACCACTCCACTCCTCCAGCCACCACCCACAATCACAAGAAGATTCCCACCCCTGCCTCCCATG|CCTGAGGCCCAGCCCTAGCCCTCAACCCACCCACAGGGTAGTTTACTACCTGGGGACCCCCCATGCCTATGCCTTCAGCTACAAAACAATTCAATTGCTTTTTTTTTTTGGTCCAAAATAAAACCTCTGCTAGCTCTGCCAACAGCT	1	0.279460276037483	0.375556752806067	0.399915574091196	N	N	3.17191961910345	3.10344090351795	3.10344090351795	splitr	4	0.0272108843537415	0.0272108843537415	0	N	0.0680272108843537	N	N	34840	388	ENSG00000135480	ENSG00000109323	+	+	12	4	52662180	103682151	utr3p	intron	KRT7	MANBA	52626954	103552660	+	-	0.0272108843537415	52642617	103649820	+	+	Y	9.23119685469864	1.29910796525387	N	SKBR3_13_2_1	3	0	3	3	2	1	N	N	0	0	2	0.471836576423731	0.45528090707553	0.471836576423731	0.45528090707553	1	1729.5	6	0.60524179975777
113901	GAATGAGCCTGTCTTCCCGTGTGAATGTGTAAGTACAGAAAGAAGGTTTTAAATGCACATAGACACACACTCTTCAACTGCCATACGAAGCGTCTGCTTCCCCAGTCATTTCAGGAACCATCAGATTATTCACGGCTGGGAGGCCCTGGAGTCTTACAAATCT|CCGGGCGGCCGTGGCGGCAGCCCCAGCGGCTCCTCCGTGCCTCTCCGCCTCCAGCAGCCCCGCATCGCCGCCGCCGCCGCCTCCCCCC	1	0.326013904374277	0.447538936456759	0.5	Y	Y	3.67320333000993	2.99822286191827	2.99822286191827	splitr	251	1	0	0	Y	0.75	N	N	22	0	ENSG00000236537	ENSG00000188451	-	+	6	6	158733390	158663829	intron	downstream	RP11-732M18.3	SRP72P2	158703295	158658368	+	-	0	158703409	158653333	-	+	N	-	-	N	SKBR3_13_2_1	1	0.223300970873786	1	1	0	1	N	Y	0	0.223300970873786	6	1.00161799556617	0.852616971432356	1.00161799556617	0.852616971432356	2	-	-	0.60524179975777
75474	CGCCAAGTTGTCCGAGCTGGAGGCCGCCCTGCAGCGGGCCAAGCAGGACATGGCGCGGCAGCTGCGTGAGTACCAGGAGCTGATGAACGTCAAGCTGGCCC|TGGACATCGAGATCGCCACCTACCGCAAACTGCTGGAGGGCGAGGAGTACAGAATGTCTGGAGAATGCCAGAGTGCCGTGAGCATCTCTGTGGTCAGCGGTAGCACCAGCACTGGAGGCATCAGCGGAGGATTAGGAA	4	0.335520135915922	0.410593795444794	0.65039877058547	N	Y	3.68527868815389	3.59681204058356	3.59681204058356	splitr	239	1	0.356435643564356	0.333333333333333	Y	0.722772277227723	N	N	64916	4591	ENSG00000170421	ENSG00000170477	+	-	12	12	53298868	53208335	coding	coding	KRT8	KRT4	53290971	53200333	-	-	0.0297029702970298	53292515	53201479	-	+	N	-	-	N	SKBR3_13_2_1	13	0	9.33333333333333	7	3	1	Y	N	0	0	3	0.894006144802859	0.836061302084155	0.894006144802859	0.836061302084155	1	-	-	0.60524179975777
94237	CTCACACTCACGCACACTCGTACTGAGACTCAAGGCCGTCTCCACAACTCCAACCAGTGCAAATGACTTAGTGCAAATTAAATTCAGAAGGGACGGGGGAAACAGAGTCGTGGAGGCTTTGAATCTCTCAGAAAAAAGGAAAGACAGGAAAGCTCAGAAACAAAGAGACAGAAGGATGAAAAAGAAGAAGAGGGAGGTGGTGGGGACGGCGTCATCCCGCTGGAGGAGCTCAGCTCTGGGATGA|CGTGGCGACCCGCTGAATTTAAGCATATTTGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGA	1	0.146212534372026	1	0.935920242646516	N	N	3.42783536197374	3.67320333000993	3.42783536197374	splitr	7	0.0493827160493827	0.0493827160493827	0.5	N	0.0617283950617286	N	N	83603	0	ENSG00000130600	ENSG00000141161	-	+	11	17	2022700	33516364	intron	intron	H19	UNC45B	2016406	33474836	-	+	0.0493827160493827	2016882	33478258	+	+	Y	-	1	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0	1	2	0.827783467410055	0.45528090707553	0.827783467410055	0.45528090707553	0	-	0	0.60524179975777
68625	TTTTTTTTTTTTTTTTTTTTTTTTTGGTGTGCAGCCCCCGAGGGGTCTCGGCAGCGCCCGGGTCTGGCTTTGCGTATTACAGTTCATCTTTCACAGCTTTCTGATCATCGTCTTCCTCCATGTCTGGCTC|CTCTTTCTTCTTCCCACTCATCCTAACCCTACTCCTAATCACATAATCTATTCCCCCGAGCAATCTCTA	1	0.547013857249903	0.390564714822603	0.421349522516249	N	N	3.36657459731105	2.80719211178384	2.80719211178384	splitr	10	0	0.144927536231884	0	N	0	N	N	25020	31	ENSG00000185624	ENSG00000132570	-	+	17	5	79818545	134343649	coding	intron	P4HB	PCBD2	79801037	134240596	-	+	0	79801941	134260383	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.438725237727329	0.827783467410055	0.827783467410055	0.438725237727329	2	-	1	0.60524179975777
31977	GTAGGCTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATTGTGAAGATGATAAGTGTAGAGGGAAGGTTAATAGTTGATATTGCTAGTGTGGCGCTTCCAATTAGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGGTTAGGCGTACGGCCAGGGCTATTGGTTGAATGAGTAGGCTGATGGTTTCGATAATAACTAGTATAGGGATAAGGGGTGTAGGTGTGCCTTGTGGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAAAGCCTATAATCACTGCGCCCGCTCATAAGGGGATGGC|CATGGAAGTCAGAATCCACTAAGGAGTGTTTAACAACAAAGAATCAACTCGCCCTGAAAAATGGATGGTACTGAAACATTGGGCCCATACCCGGCCATTGCCAGCAGTTGAGAGTGGATGGGAGTGGTGAGGGTGGTCGCTCCCGCTGGAGCCCCGAGGATGCTATGCTGCTATGAGTGGGAGGACCGCTGCAATGAGCCTTGAAGCCTTGGGCATGAGCCTGGGTGGAGCTGTCCCAGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCAGTTG	2	1.78809334445334e-19	0.467754455729131	0.686272108117709	N	N	3.52936639476796	3.49168728493972	3.49168728493972	splitr	5	0.0159744408945689	0.00319488817891378	0	N	0.00638977635782745	N	N	3	0	ENSG00000230021	ENSG00000251948	-	+	1	19	659930	24184165	intron	upstream	RP5-857K21.4	AC092279.1	536816	24184075	-	-	0.0159744408945689	569388	24184387	-	+	Y	0.828962371721779	-	N	SKBR3_13_2_1	2	1	2	2	2	2	N	N	0	1	2	0.678782443276245	0.45528090707553	0.678782443276245	0.45528090707553	1	0	-	0.60524179975777
94677	ATTACAGGCATGAGCCACCATGCCTGGCGTTTTTTTTTTTTTGT|CTCTTCCTCCTTGGATAAAGTCTTGATGATCTCCTCCTTCTTGGCCTGGAGGCGCTCTTCACGGCGCTTGCGTGCTTCCTTGGTCTTAGACCTGCGGGCCTCAGCCTGGTCAGCCAGGAGCTTCTTGCGGGCCTTGTCTGCCTTCAGCTTGTGG	2	0.303368718173829	0.374808295748621	0.564257146108723	N	Y	3.13214386451189	3.14309286693013	3.13214386451189	splitr	198	0.0454545454545453	0.0454545454545453	0	N	0.5	N	N	255	129759	ENSG00000075914	ENSG00000108298	+	+	3	17	45077558	37360980	intron	coding	EXOSC7	RPL19	45016733	37356536	+	+	0.431818181818182	45046062	37360889	+	+	Y	-	-	N	SKBR3_13_2_1	99	0.892857142857143	60.3333333333333	18	3	1	N	N	0.892857142857143	0	3	0.463558741749631	0.943673152847462	0.943673152847462	0.463558741749631	2	-	-	0.60524179975777
73204	ACTAAGGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCAC|AATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACCGTTTGAC	1	0.0857231068930942	0.375556752806067	0.399915574091196	N	N	3.50272957331379	3.33164690237084	3.33164690237084	splitr	9	0.095238095238095	0	0.5	Y	0.166666666666667	N	N	3	0	ENSG00000230021	ENSG00000162669	+	-	1	1	659930	91870426	intron	intron	RP5-857K21.4	HFM1	536816	91726323	-	-	0.095238095238095	569345	91852842	+	-	N	0.828962371721779	1	N	SKBR3_13_2_1	6	1	4.5	3	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	0	0	0.60524179975777
134709	CATAAGAACAAAATGGATGGAGAGGAGAAAACCTATGGTGGCTGTGAAGGACCTGATGCCATGTATGTCAAATTGATATCATCTGATGGCCATGAATTTATTGTAAAAAGAGAACATGCATTAACATCAGGCACGATAAAAGCCATGTTGAGTGGCCCAGGTCAGTTTGCTGAGAACGAAACCAATGAGGTCAATTTTAGAGAGATACCTTCACATG|CTGGGGCTGGCATTGCCCTCAACGACCACTTTGTCAAGCTCATTTCCTGGTATGACAACGAATTTGGCTACAGCAACAGGGTGGTGGACCTCATGGCCCACATGGCCTCCAAGGAGTAAGACCCCTGGACCACCAGCCCCAGCAAGAGCACAAGAGGAAGAGAGAGACCCTCACTGCTGGGGAGTCCCTGCCACACTCAGTCCCCCACCACACTGAATCTCCCCTCCTCACAGTTGCCATGTAGACC	1	6.17513683116444e-06	0.311204357582937	0.306030290211129	N	N	3.53039946453785	3.51679652308403	3.51679652308403	splitr	11	0.0138248847926269	0.00460829493087545	0	N	0.0414746543778802	N	N	2305	62936	ENSG00000154582	ENSG00000111640	+	-	8	12	74884522	6647537	coding	coding	TCEB1	GAPDH	74857354	6643093	-	+	0.0138248847926269	74858999	6647114	-	-	Y	-	-	N	SKBR3_13_2_1	10	0	9.5	9	2	1	Y	N	0	0	2	0.827783467410055	0.678782443276245	0.827783467410055	0.678782443276245	1	-	-	0.60524179975777
75752	GAGCGGGAGATGCCAGCCAGACAGTGGACGATGACTTGGCAGCTGGAGAGCTTGGCTTTATCGATGAACTCGATGGACTTGTCCAGCCAGGGCAGCAGTTTTTCACAGTAGTTGTCGTTGATGGGGACCCGCATGAA|TTTAAGCATATTTGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCG	3	0.321140336746698	0.0697481096246482	0.0727719375675796	N	N	3.48383749183115	3.52577267191832	3.48383749183115	splitr	12	0	0	0	N	0	N	N	307	0	ENSG00000184545	ENSG00000141161	-	+	11	17	1593150	33516364	coding	intron	DUSP8	UNC45B	1575274	33474836	-	+	0	1579417	33478241	+	+	Y	-	1	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0	1	2	0.827783467410055	0.45528090707553	0.827783467410055	0.45528090707553	2	-	0	0.60524179975777
61149	TTTACGTTGTTAGATATAGGGAGTAGTGTGATTGAG|TGCTGGGGAGGATGGGGGGATGTTATATAAATATAGATATAATTTTATTTTCGGAGCTAAGATGGTGTTATTTAAGGGTGGTGATGGGTGAGCGCTCTGGCCCAGGCTGGGCCAGACTCCCGCCCAAGCATGAACAGGACTTGACCATCTTTCCAACCC	1	0.58362921382806	0.209527803558926	0.160545729398276	N	N	3.01950087524886	2.87101352952628	2.87101352952628	splitr	0	0	0	0	N	0	N	N	0	6449	ENSG00000225630	ENSG00000143878	-	-	1	2	566063	20649200	intron	intron	RP5-857K21.8	RHOB	565020	20646835	+	+	0	565919	20648282	-	-	Y	1	0.872020599197934	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.480114411097832	0.687060277950346	0.687060277950346	0.480114411097832	2	0	289	0.60524179975777
31092	CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACAGCCCCAGTCAAACTCCCCACCTGGCAC|TGTCCCCGCGAGGGGTCCAGGGCGGGGTCTGCCGGCCCTGCGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGGTGAGGCGGGGGGGCGAGCCCTGAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCA	90	1	0.0126732453748447	0.0291708575370603	N	N	3.31489131844487	3.03383583220673	3.03383583220673	splitr	8	0	0	0.4	N	0	N	N	0	0	ENSG00000162669	ENSG00000226958	+	-	1	X	91870426	108297792	intron	intron	HFM1	RN28S1	91726323	108297361	-	-	0	91853138	108297684	+	-	Y	1	1	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	0.983050847457627	5	0.869172640780558	0.976784491543865	0.976784491543865	0.869172640780558	1	0	0	0.60524179975777
133343	GTTCCTGAGAGTGGAGATCTGGATGATGATGCTGAAGCTATCCTTGCTGCAGACTTCGAAATTGGTCACTTTTTACGTGAGCGTATAATCCCAAGATCAGTGTTATATTTTACTGGAGAAGCTATTGAAGATGATGATGATGATTATGA|AGATGCAGAGTCAGAAGATGAAGAGGAGGAGGATGTGAAACTCTGAAGTATATCTGGAAAGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCTGCTGATGAAGATGATGACGATGATGATGAAGAGGATGATGATGAAGATGATGATGATGATGATTTTGATGATGAGGAAGCTGAAGAAAAAGCGCCAGTGAAGAAATCTATACGAGATACTCCAGCCAAAAATGCACAAAAGTC	1	0.000237318870538369	1	0.935920242646516	N	N	3.07778795147051	2.89312861149796	2.89312861149796	splitr	2	0.0134228187919461	0.00671140939597314	0	N	0.0134228187919461	N	N	4449	108	ENSG00000187109	ENSG00000113391	+	+	12	5	76478738	93447404	coding	intron	NAP1L1	FAM172A	76438682	92953775	-	-	0.0134228187919461	76443561	93019062	-	+	Y	-	0.998229746013441	N	SKBR3_13_2_1	42	0.2	25	8	2	1	N	N	0	0.2	2	0.827783467410055	0.538059253816536	0.827783467410055	0.538059253816536	0	-	3	0.60524179975777
111427	GAGCAGAGAGCCAGCCCTCTGACGTCCATCATCTCTGCGGTGGTTGGCATTCTGCTGGTCGTGGTCTTGGGGGTGGTCTTTGGGATCCTCATCAAGCGACGGCAGCAGAAGATCCGGAAGTACACGATGCGGAGACTGCTGCAGGAAACGGAGCTGGTGGAGCCGCTGACA|GGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAACAT	8	1	0.046328107468559	0.0910071316110105	N	N	3.31695745798465	3.44871903508266	3.31695745798465	splitr	3	0	1.11022302462516e-16	0	N	1.11022302462516e-16	N	N	74211	0	ENSG00000141736	ENSG00000252318	+	+	17	2	37884915	133038738	coding	intron	ERBB2	AC097532.1	37844393	133038647	+	-	0	37879808	133038721	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	0	1	2	0.827783467410055	0.571170592512938	0.827783467410055	0.571170592512938	1	-	0	0.60524179975777
122050	CGTGGCGACCCGCTGAATTTAAGCATATTTGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGG|GAAATGTGGCGTACGGAAGACCCACTCCCCAGCGCCACTCATGGGGGGCCCAAGTCCTTCTGATCGAGGTGGGAA	13914	0.362232013648867	0.458898828211747	0.871314290432203	N	N	2.95952426268928	3.62192127872787	2.95952426268928	splitr	18	0.24	0	0.111111111111111	N	0.893333333333333	N	N	0	799	ENSG00000141161	ENSG00000182307	-	+	17	8	33516364	146281416	intron	upstream	UNC45B	C8orf33	33474836	146277764	+	+	0.24	33478131	136786084	-	+	Y	1	-	N	SKBR3_13_2_1	2	1	1.11111111111111	1	1	1	N	N	1	1	9	1.05128500361077	0.728449451320848	1.05128500361077	0.728449451320848	1	0	-	0.60524179975777
123232	TCGGCAGCGCCCGGGTCTGGCTTTGCGTATTACAGTTCATCTTTCACAGCTTTCTGATCATCGTCTTCCTCCATGTCTGGCTCCTCTGCTTCTTCCAGGTCCTCGAGATCGTCATCATCCCCTG|CCCCTACTCCTGGCCCCTCCATCCTTTCTTCTCTGGTCCCCATCCCTGTCTCTCCCTTTCACCCTTGCCCTCCAGTCCTCTACCTCTGGCCTGCCCCTATTTCTGAAAGCTTCTTCCAGTCCCTGATCTGGCTCATTCCCCACCTTCAACTCCCACCTTACATGTCTCACACTATCCCATGGTTGGCATTACACTCACTCCTGTTCCCTTATTCTTCATTCCCAGTAATTCC	1	0.17238315544984	0.375556752806067	0.399915574091196	N	N	3.36401394423131	2.85481008219937	2.85481008219937	splitr	26	0.0564516129032259	0.0564516129032259	0	N	0.0564516129032259	N	N	25020	0	ENSG00000185624	ENSG00000225065	-	-	17	20	79818545	33302432	coding	intron	P4HB	RP11-346K17.4	79801037	33284722	-	-	0.0564516129032259	79803033	33298346	+	-	Y	-	1	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.44700307240143	0.827783467410055	0.827783467410055	0.44700307240143	2	-	0	0.60524179975777
72550	ACCCTTACTACACAATCAAAGACGCCCTCGGCTTACTTCTCTTCCTTCTCTCCTTAATGACATTAACACTATTCTCACCAGACCTCCTAGGCGACCCAGACAATTATACCCTAGCCAACCCCTT|CCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTCATCCAAACCCC	2	1	0.258666488296237	0.373143407944048	N	N	3.44871903508266	3.64656650855576	3.44871903508266	splitr	13	0.0967741935483871	0.0967741935483871	0	N	1	Y	N	37049	93473	ENSG00000198727	ENSG00000198886	+	-	MT	MT	15887	12137	coding	coding	MT-CYB	MT-ND4	14747	10760	+	+	0.0967741935483871	15531	11542	+	-	N	-	-	N	SKBR3_13_2_1	3	0	2	1	1	2	Y	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
87274	CAGAAGGAGATCACGGCCCTAGCACCCAGCACCATGAAGATCAAGATCATTGCCCCTCCGGAGCGCAAATACTCTGTCTGGATCGGTGGCTCCATCCTGGCCTCTCTGTCCACCTTCCAGCAGATGTGGATCAGCAAACAGGAATACGATGAAGCCGGGCCTTCCATTGTCCACCGCAAA|ATGCTTCTAGGCGGACTGTGACTTAGTTGCGTTACACCCTTTCTTGACAAAACCTAACTTGCGCAGAAAACAAGATGAGATT	1	1	0.311204357582937	0.306030290211129	N	Y	3.72874145155091	3.66592259835483	3.66592259835483	splitr	262	0.74390243902439	0.74390243902439	0	N	0.75609756097561	N	N	41	1	ENSG00000107796	ENSG00000171877	+	+	10	15	90751147	44487450	coding	intron	ACTA2	FRMD5	90694831	44162962	-	-	0.74390243902439	90694989	44281268	-	+	Y	-	1.01746419839329	N	SKBR3_13_2_1	5	0	3.5	2	2	1	N	N	0	0	2	0.827783467410055	0.811227798061854	0.827783467410055	0.811227798061854	2	-	0	0.60524179975777
128281	GGCGGGGCCCCCGAGGTTGGTGGAGTGGCGGGCGGGGCCGAGCTGGAGGCTGGTGGTGCGCTGCCTACTCCGGGAGCGGGGCCGGGTCCCTGAGCAACGACGGGCTTGGAAGAGTCCTGCGGCGGTGGCGGCGG|GGCGGCGTCCTGACCGCGTCCGACGGGCTGCTGGCGGGCAACGAGAAGCTAACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGCGGCCAACGGCGAGCTAGAGGTGAAGATCCGCGACTGGTACCAGAAGCAGGGGCC	1	0.445405371378608	0.205558172728075	0.155228020814782	N	N	3.4503745994685	3.13801564636332	3.13801564636332	splitr	8	0.0597014925373135	0.0597014925373135	0	N	0.0895522388059702	N	N	2945	58670	ENSG00000116560	ENSG00000171345	-	+	1	17	35658749	39684560	coding	coding	SFPQ	KRT19	35641979	39679869	-	-	0.0597014925373135	35658356	39684304	+	+	Y	-	0.93850482393882	N	SKBR3_13_2_1	18	0	9.5	1	1	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	4	-	2556.5	0.60524179975777
141609	CTCAGAAAAAAGGAAAGACAGGAAAGCTCAGAAACAAAGAGACAGAAGGATGAAAAAGAAG|AAGAAGGAGGTGGTGGAGGCTGTGACCATTGTAGAGACACCACCCATGGTGGTTGTGGGCATTGTGGGCTACGTGGAAACCCCTCGAGGCCTCCGGACCTTCAAGACTGTCTTTGCTGAGCACATCAGTGATGAATGCAAGAGGCGTTTCTATAAGAATTGGTAAGGGAGGAGGC	2	1	0.935695919090345	0.128734512121114	N	N	2.69993085858333	3.46505046348556	2.69993085858333	splitr	16	1.11022302462516e-16	1.11022302462516e-16	0	N	1.11022302462516e-16	N	N	83603	22077	ENSG00000130600	ENSG00000100316	-	+	11	22	2022700	39716394	intron	coding	H19	RPL3	2016406	39708887	-	-	1.11022302462516e-16	2016825	39713626	+	+	Y	-	2.35011136165439	N	SKBR3_13_2_1	2	0	1.5	1	1	1	N	N	0	0	2	0.769838624691351	0.554614923164737	0.769838624691351	0.554614923164737	3	-	2171	0.60524179975777
141159	TCTTCAACGCTCCTTTCTCGTTCTTCTCCTTGGCTGGCTCATCAATGACCAGCTTCCCTTCCTCG|TCGCTGCTGCGGCCGCAGCCATGAGCATGCTCGGGCCTCAGAAGAGGCTCGCCTCTAGTGTCCTCCGCTGTGGCAAGAAGAAGGTCTGGTTAGACCCCAGTGAGACCAATGAAATCGCCAATGCCAACTCCCGTCAGCAGATCCGGAAGCTCATCAAAGACGGGCTGATCATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACGTGGCCATAGGTGAGCAGAAGGGTACAGCCAATGCCCGAATGCCAGAGAAGGTCACATGGATGAGGAGAATGACGATTTTGCGCCGGCTGCTCAGAAGATACCGT	1	0.000280960193010424	0.447538936456759	0.5	N	N	3.45293525254824	3.20015857178097	3.20015857178097	splitr	17	0.0769230769230768	0	0	N	0.0615384615384617	N	N	6946	0	ENSG00000143321	ENSG00000218227	-	-	1	5	156736717	177483195	coding	upstream	HDGF	RP11-889L3.1	156711899	177482605	-	+	0.0769230769230768	156714042	177482585	+	-	Y	-	-	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
132344	CATTGTGCAGAATTCGTCCCCGGATTACTTGCAGGTTCTGGAAGACGCTGAGGTCAGGCAGGCTGTCCGGCCATGCTGAGATGTATAGGTAACCTGTGATCTCTTCCAGAGTCTCAAACACTTGGAGCTGCTCTGGCTGGAGCGGGGCAGTGTTGGAGGCTGGGTCCC|TGTAGTCCCAGCTACTCAGGAGACTGAGGCAGGAGAATTGCTTGAACCCGAGAAGCGGAGGTTGCAG	5	0.874287491456395	0.220718995246473	0.434889079807473	N	Y	3.12804628055249	3.60422075331465	3.12804628055249	splitr	166	0.895522388059701	2.22044604925031e-16	0	N	0.925373134328358	N	N	74211	716	ENSG00000141736	ENSG00000033867	-	-	17	3	37884915	27525911	coding	intron	ERBB2	SLC4A7	37844393	27414214	+	-	0	37868701	27448847	-	-	Y	-	1.05905525074423	N	SKBR3_13_2_1	7	1	5	3	2	1	N	N	0	1	2	0.827783467410055	0.44700307240143	0.827783467410055	0.44700307240143	2	-	14	0.60524179975777
100532	ATGTACAGAGAATCTGTTTTGGGTCTCCTCCCCCGCACCCCCCCCCCGCCCCC|TCCCCTCCTCCCCCCCCTCCCCTGCAGCCCCACGGAGTCTACGCCGGGAGGAGTAGGAGGGCCGCTGCGGTAAGCTTTGAAGCCTAGGGTATGGGCCCAGGTGGATAGGCCACAGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGT	2	1	0.591467583851718	0.806513315066759	N	N	2.57814380496935	2.74731396073257	2.57814380496935	splitr	0	0	0	0	N	0	N	N	304	0	ENSG00000107882	ENSG00000252318	+	+	10	2	104393292	133038738	intron	upstream	SUFU	AC097532.1	104263744	133038647	+	-	0	104339802	133038835	+	+	Y	1.08962848577496	-	N	SKBR3_13_2_1	9	1	6.2	4	5	1	N	N	0	1	5	0.413891733705027	0.629115435231642	0.629115435231642	0.413891733705027	1	2.6	-	0.60524179975777
110509	CCTCTGCTTCCCGGGTTCAAGTGATTCTCCTGCC|TCAGCCTCCCAAGTAGCTGGGATTACAGGCACCCACGAGCATGCCCGGCTAATTTTTTGTATTTTCAGTAGAGATGGGTTTCACCATGTTGGCCAGGC	1	0.0298122098300594	1	0.935920242646516	N	Y	3.38324732566399	3.57808779297027	3.38324732566399	splitr	132	0.882352941176471	0.852941176470588	1	N	0.852941176470588	N	N	1	0	ENSG00000158901	ENSG00000132718	+	-	20	1	44207965	155854990	utr3p	utr3p	WFDC8	SYT11	44179792	155829300	-	+	0.852941176470588	44180171	155851635	-	-	Y	-	1	N	SKBR3_13_2_1	2211	1	2019	1827	2	1	N	N	1	1	2	0.678782443276245	0.827783467410055	0.827783467410055	0.678782443276245	1	-	0	0.60524179975777
107311	GAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTATTCGTAGGTTCAGTACCATTGATGGCCAATTGATTTGATGGTAAAGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGTAGGGATGGGAGGGCGATAAGGACTAGG|AGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTGAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCC	1	1	0.899266171301115	0.897571427984624	N	N	3.16679831294397	3.41592783769912	3.16679831294397	splitr	4	0.00854700854700841	0	0	N	0	N	N	3	0	ENSG00000230021	ENSG00000253128	-	+	1	14	659930	107281252	intron	downstream	RP5-857K21.4	IGHV4-80	536816	107281000	-	-	0.00854700854700841	568352	50320558	-	+	Y	0.828962371721779	-	N	SKBR3_13_2_1	26	1	23	20	2	1	N	N	0	1	2	0.827783467410055	0.60428193120934	0.827783467410055	0.60428193120934	2	0	-	0.60524179975777
72887	CCCCACCCCACCCTCCCTTACTCCCAGTAACTAGCTCCAAAATGAAAAAACTTCCCTTGTCCCACCTGGGGACTAAATTCCCACCTCCACTGCCATAACACTAGAGAAACAAAATAAAAAATATGCAGCAGCTCACCACCCACC|ACATTAACAACATAAAACCCTCATTCACACGAGAAAACACTCTCATGTTCATACACCTATCCCCTATCCTCCTCCTA	1	1	0.261533274614987	0.233421673643755	N	N	3.06832244676945	3.03482904918326	3.03482904918326	splitr	14	0	0	0	N	0	N	N	659	31	ENSG00000213676	ENSG00000132570	+	+	6	5	32096030	134343649	utr3p	intron	ATF6B	PCBD2	32065907	134240596	-	+	0	32083258	134262462	+	+	Y	0.642424796659616	1.2575464834446	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.430447403053228	0.504947915120133	0.504947915120133	0.430447403053228	2	28	1	0.60524179975777
108448	TAAATTCAGAAGGGACGGGGGAAACAGAGTCGTGGAGGCTTTGAATCTCTCAGAAAAAAGGAAAGACAGGAAAGCTCAGAAACAAAGAGACAGAAGGATGAAAAAGAAGAAG|AAGAGGGAGGTGGCAGGAGGATCAGGTCAGAAGAGAAGT	1	0.136147294241825	0.254583648908217	0.223418152789081	N	N	2.71931745360593	2.88231881798207	2.71931745360593	splitr	13	0.256410256410256	0.256410256410256	0	N	0.282051282051282	N	N	83603	7	ENSG00000130600	ENSG00000255906	-	+	11	12	2022700	124796476	intron	intron	H19	RP11-522N14.1	2016406	124457788	-	+	0.256410256410256	2016828	124643923	+	+	Y	-	2.57303370786517	N	SKBR3_13_2_1	18	0.735849056603774	11	4	2	1	N	N	0	0.735849056603774	2	0.521503584468335	0.438725237727329	0.521503584468335	0.438725237727329	2	-	0	0.60524179975777
127335	CGCCAAGAGGCAAGGGGCGGGGACGGGCAGTGGCTCGCCTCATGGCGGACTGCCCGCCCGCTCCCAAGATCCAACTAGGAGCTTTTTAACTGCAGCAACTTTAATATACGCTATTGGAGCTGGAATTACCGCG|GCTGCGGTGGCACCAGCCAGGAGGCGGAGTGGAAGTGGCCGTGGGGCGGGTATGGGACTAGCTGGCGTGTGCGCCCTGAGACGCTCAGCGGGCTATATACTCGTCGGTGGGGCCGGCGGTCAGTCTGCGGCAGCGGCAGCAAGACGGTACAGTGAAGGAGAGTGGGCGTCTGGCGGGGTCC	2	1	0.128781418024986	0.13474080447132	N	N	3.6272104187567	3.34205734855915	3.34205734855915	splitr	13	0	0	0	N	0	N	N	1	3435	ENSG00000256642	ENSG00000126432	-	-	16	11	33962503	64089283	upstream	utr5p	NCRNA00273	PRDX5	33961052	64085560	-	+	0	33963120	64085637	-	-	Y	-	0.0235995999775546	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	1	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	20.5	0.60524179975777
125424	TGTCTTTCTGTGGAGCTGTCGCCATGAAGGTCGAGCTGTGCAGTTTTAGCGGGTACAAGATCTACCCCGGACACGGGAGGCGCTACGCCAGGACCGACGGGAAGGTTTTCCAGTTTCTTAATGCGAAATGCGAGTTGGCGTTCCTTTCCAAGAGGAATCCTCGGCAGATAAACTGGACTGTCCTCTACAGAAGGAAGCACAAAAAGGGGCAGTCGGAAGAAATT|AAAAAAAAAAAACCCCGCCATGGAAGGAGAATTCACAGGCAAGA	1	1	0.375556752806067	0.399915574091196	N	N	3.22998788850064	3.09343168491377	3.09343168491377	splitr	15	0.295454545454546	0.204545454545455	0	N	0.272727272727273	N	N	0	0	ENSG00000181524	ENSG00000220804	-	-	6	2	42924503	243102304	intron	upstream	RPL24P4	AC093642.5	42924083	243030784	-	+	0.295454545454546	42924266	161416506	-	-	Y	1	-	N	SKBR3_13_2_1	21	0.846153846153846	11	6	3	1	N	N	0	0.846153846153846	3	1.05956283828487	0.430447403053228	1.05956283828487	0.430447403053228	2	0	-	0.60524179975777
92948	TTCAACTGCTGTTCACATGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAAAATTTGCTACTACCACCAAGATCTGCACCTGTGGCCTATCCACCTGGGCCCATACCCTAGGCTTCAAAGCTTACCGCAGCGGCCCTCCTACTCCTCCCGGCGTAGACTCCGTGGGGCTGCAGGGGAGGGGGGGGAGGAGGGGACGGGAGGACCCCCACTGCACTCACACGGGTGTACTGCCCCTGCCGCTCCCATCCACTCTC|CTAATACTAACTACCTGACTCCTGCCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAATGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATGACATTCACAGCCATAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCC	2	2.67968076577243e-05	0.374808295748621	0.564257146108723	N	N	3.22912265260009	3.32845440710534	3.22912265260009	splitr	3	0	0	0	N	0	N	N	0	31	ENSG00000252318	ENSG00000132570	+	+	2	5	133038738	134343649	upstream	intron	AC097532.1	PCBD2	133038647	134240596	-	+	0	133038895	134263531	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	6	1	5.33333333333333	4	3	2	N	N	1	0	3	0.463558741749631	1.05128500361077	1.05128500361077	0.463558741749631	2	-	0.666666666666667	0.60524179975777
54818	TCCCTGTCTGACCCAGGCCTGGGGTACCACCCCACGTGCTGGACCCTACGCTGGCCACCCCTGTGCTCCCTCC|CAGCCCTATACTCCCTCTACATATTTACCACAACACAATGAGGCTCGCTCAGCCACCACATTAACAACATAAAACCCTCATTCACACGAGAAAACACTCTCATGT	1	0.117324741116126	0.321839855309698	0.321669634186996	N	N	3.1703920357936	3.15103594599453	3.15103594599453	splitr	7	0	0	0	N	0	N	N	83603	31	ENSG00000130600	ENSG00000132570	-	+	11	5	2022700	134343649	intron	intron	H19	PCBD2	2016406	134240596	-	+	0	2018411	134262519	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	2	0	2	2	2	4	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	1	0.60524179975777
128818	CCTTTAAAAAAAAAAAAAGTTGTGGTTTTTTGTTTTTTTTTTTTTTTTTTTTGG|CTATGACTTAGATTTAAAAACTGGAACGGTGAAGGTGACAGCAGTCGGTTGGAGCGAGCATCCCCCAAAGTTCACAATGTGGCCGAGGACTTTGATTGCACATTGTTGTTTTTTTAATAGTCATTCCAAATATGAGATGCGTTGTTACAGGAAGTCCCTTGCCATCCTAAAAGCCACCCCACTTCTCTCTAAGGAGAATGGCCCAGTCCTCTCCCAAGTCCACACAGGGGAGGT	1	0.598616024516712	0.842938967773855	0.869602123524748	N	Y	1.77956130770447	3.39487633072086	1.77956130770447	splitr	30	0.5	0.462962962962963	0	N	0.592592592592593	N	N	29	30285	ENSG00000169122	ENSG00000075624	+	-	8	7	59116838	5603415	intron	utr3p	FAM110B	ACTB	58907068	5566782	+	-	0.5	59060747	5567373	+	+	Y	-	-	N	SKBR3_13_2_1	320	0.509433962264151	113.4	18	5	1	N	N	0.509433962264151	0	5	0.438725237727329	0.885728310128759	0.885728310128759	0.438725237727329	0	-	-	0.60524179975777
134375	AGGGGATGGGGATAGAGGAAAGGGATGGTAAGTTGAGATGTTGTGTGGCAATGGGATTTGGGCTACCCTAAAGGGAGAAGGAAGGGCAGAGAATGGCTGGGTCAGGGCCAGACTGGAAGACACTTCAGATCTGAGGTTGGATTTGCTCATTGCTGTACCACATCTGCTCTAGGGAATCTGGATTATGTTATACAAGGCAAGCA|TTTTTTTTTTTTTTTTTAAAGAAGTGGACAATCACATCAACCTAGT	2	1	0.653422657651801	0.85105226164832	N	N	3.6491271616355	2.78364273245814	2.78364273245814	splitr	22	0.456521739130435	0.456521739130435	0	N	0.456521739130435	N	N	2374	4	ENSG00000119699	ENSG00000142609	+	+	14	1	76448092	1935276	utr3p	intron	TGFB3	C1orf222	76424442	1853396	-	-	0.456521739130435	76425064	1915742	-	-	Y	-	-	N	SKBR3_13_2_1	5	0.431372549019608	5	5	2	1	N	N	0	0.431372549019608	2	0.496670080446033	0.422169568379128	0.496670080446033	0.422169568379128	2	-	-	0.60524179975777
141442	ACAGCACTTAGTAGCTGTGGAGGAAGATGCAGAGTCAGAAGATGAAGAGGAGGAGGATGTGAAACTCTTAAGTATATCTGGAAAGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCTGTTGATGAAGATGATGATGATGATGATGATGATGATGATGATGAT|GAAGATGATGATGATGAATAAGTTGGTTCTAGCGCAGTTTTTTTTTTCTTGTCTATAAAGCATTTAACCCCCCTGTAC	5	1	0.120857340759013	0.255987339525967	N	N	1.84579154314066	3.48337348351473	1.84579154314066	splitr	26	0.102564102564103	0.102564102564103	0	N	0.243589743589744	N	N	0	4511	ENSG00000225159	ENSG00000189403	+	+	1	13	27534287	31191734	intron	coding	RP11-40H20.2	HMGB1	27533421	31032884	+	-	0.102564102564103	27533942	31035514	+	+	Y	1	0.700847209942379	N	SKBR3_13_2_1	51	0.241758241758242	43.6666666666667	40	3	1	N	N	0	0.241758241758242	3	0.554614923164737	0.75328295534315	0.75328295534315	0.554614923164737	2	0	150.333333333333	0.60524179975777
139998	AAAAGCGGATGGTGGTTCCTGCTGCCCTCAAGGTCGTGCGTCTGAAGCCTACAAGAAAGTTTGCCTATCTGGGGCGCCTGGCTCACGAGGTTGGCTGGAAGTACCAGGCAGTGACAGCCACCCTGGAGGAGAAGAGGAAAGAGAAAGCCAAGATCCACTACC|GGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCG	1	0.0774301597681072	0.209527803558926	0.160545729398276	N	N	3.18077197675837	3.6387167154472	3.18077197675837	splitr	11	0.125	0.125	0	N	0.295454545454545	N	N	29339	0	ENSG00000142541	ENSG00000141161	+	+	19	17	49995565	33516364	coding	intron	RPL13A	UNC45B	49990811	33474836	+	+	0.125	49994784	33478219	+	+	Y	-	1	N	SKBR3_13_2_1	12	1	8.4	4	5	1	N	N	0	1	5	1.39895405992299	0.571170592512938	1.39895405992299	0.571170592512938	1	-	0	0.60524179975777
137250	GAGGGCATCTACTTCCACGGTCAACCCAGAGCTGGCAATCTGGGCTTGTAGGCCTTTTACTTCCACTTCGTGGTTCTTCTTCATGAAGAGCAGCTCCTCCTTGAGAGCTTCCATCTCTGTCTCCAGCTGCAGTTGAGTGACATTGGTGTCATCAGCGATCTTGTGGAGCCCATGGATGTTGCTCTCCACAGACTGGTGCATGGCCAGCTCTGACTCATACGTGACTCTAAAGTCATTAGCAGCAATACGGGCATTGTCGATCTGCA|TCTCCAGGTCGGTCCTGGCCAGGGTCAGCTCATCCAGCACCCTGCGCAGGCCGTTGATGTCGGCCTCCACGCTCATGCGCAGAGCCTGTTCCGTCTCAAACC	9	0.00143149324788312	0.0541394785736919	0.123822323309865	N	N	3.63296356710195	3.2671631372191	3.2671631372191	splitr	10	0	0	0	N	0	N	N	0	58670	ENSG00000234439	ENSG00000171345	+	-	21	17	21798518	39684560	intron	coding	KRT18P2	KRT19	21797261	39679869	-	-	0	21798098	39681151	+	-	Y	1	1.72783998246816	N	SKBR3_13_2_1	54	0	35	16	2	1	N	N	0	0	2	0.811227798061854	0.662226773928044	0.811227798061854	0.662226773928044	1	0	4776	0.60524179975777
122718	CCTGGCGAAGAATGGTGTTCCGGCGCATGGTCTTTGCATATGGGTTTAGCTTCAACATGATTCTCAAGTTTTTCAGTGGGTTCTTCTTTAGGACTCTGCGATG|TGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAAACGGCAGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGAGGCGCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCA	1	1	0.899266171301115	0.897571427984624	N	N	3.42320856935422	3.2232016703855	3.2232016703855	splitr	7	0	0	0	N	0.0873786407766992	N	N	21672	0	ENSG00000174444	ENSG00000226958	+	-	15	X	66797221	108297792	coding	intron	RPL4	RN28S1	66790801	108297361	-	-	0.0679611650485435	66792504	108297382	+	-	Y	0.382680496295718	1	N	SKBR3_13_2_1	20	1	15	9	3	2	N	N	0	1	3	0.786394294039552	0.927117483499261	0.927117483499261	0.786394294039552	2	1098.33333333333	0	0.60524179975777
124478	GGTGTAAAGGGATTTATATGGGGACGTAGGCCGATTTCCGGGTGTTGTAGGTTTCTCTTTTTCAGGCTTATACTCATGAATCTTGTCTGAAGCTTTTGAGGGCAGACTGCCAAGTCCTGGAGAAATAGTAGATGGCAAGTTTGTGGG|TTTTTTTTTTTTTCCACGAATTTGTGTGTCATCACTGCACAGGGGTCATG	3	0.382669438311949	0.808929210062517	0.955249021598247	N	N	3.4561676006071	3.00555702673585	3.00555702673585	splitr	24	0.44	0	0	N	0.52	N	N	0	0	ENSG00000251562	ENSG00000252755	+	+	11	8	65273940	99061190	intron	intron	MALAT1	U6.1238	65265233	99061084	+	+	0.44	65268479	99061187	+	+	Y	1	1	N	SKBR3_13_2_1	3	0.269230769230769	2.5	2	2	1	N	N	0	0.269230769230769	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	2	0	0	0.60524179975777
79535	TTTTTTTTTTTTTTTTTTCCCCCTTAAATAGCTGTTTATTTGGCAGTGTGCCGGAAAGGGTGATGGACTTAGCATTCACAGACG|ACACCACACACAACCAGTCCCGAAAATGGCACAGAAATGGTATCAAGAAACCCCGATCACAAAGATACGAATCTCTTAAGGGGGTGGACCCCAAGTTCCTGAGGAACATGCGCTTTGCCAAGAAGCACAACAAAAAGGGCCTAAAGAAGATGCAG	2	0.764246547084095	0.935695919090345	0.564257146108723	N	Y	3.7061623612628	3.17610533134549	3.17610533134549	splitr	239	0	0	0	N	0.0476190476190477	N	N	37145	9169	ENSG00000149925	ENSG00000162244	-	-	16	3	30081741	52029958	utr3p	coding	ALDOA	RPL29	30064444	52027644	+	-	0	30081669	52029458	-	+	Y	-	-	N	SKBR3_13_2_1	11	0	7.875	6	8	1	N	N	0	0	8	0.562892757838837	1.43206539861939	1.43206539861939	0.562892757838837	2	-	-	0.60524179975777
141416	GCTTGTCTTTGAACACATTCCCCTTCACCTTCAGGTACAGGCTGTGATACGTGTGGCGATCGATCTTCTTAGATTCACGGTATCTTCTGAGCAGCCGGCGCAAAATCGTCATTCTCCTCATCCATGTGACCTTCTCTGGCATTCGGGCA|TTTGCTATACCCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGGGTGTTTCAGTTCCTCCATTTAACAGATATGAAGAGTATTTTAAG	1	1	0.704121951840997	0.776581847210919	N	N	3.37717580530765	3.50848272165904	3.37717580530765	splitr	19	0.138297872340425	0.117021276595745	0	N	0.223404255319149	N	N	0	0	ENSG00000218227	ENSG00000235449	-	+	5	1	177483195	202736548	intron	intron	RP11-889L3.1	RP11-480I12.2	177482605	202736357	+	-	0.138297872340425	177482862	202736404	-	+	Y	1	1	N	SKBR3_13_2_1	24	0	14	4	2	1	N	N	0	0	2	0.827783467410055	0.587726261861139	0.827783467410055	0.587726261861139	2	0	0	0.60524179975777
129075	TACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTA|CTAAAACACTCACCAAGACCTCAACCCCTGACCCCC	1	0.00415989940823447	1	0.935920242646516	N	Y	3.52208566311286	2.85680638618972	2.85680638618972	splitr	111	1	0.0555555555555556	0	Y	0.333333333333333	N	N	38194	19641	ENSG00000198899	ENSG00000198695	+	+	MT	MT	9207	14673	coding	coding	MT-ATP6	MT-ND6	8527	14149	+	-	0.0555555555555556	9019	14394	+	-	N	-	-	N	SKBR3_13_2_1	3	0	2.33333333333333	2	3	3	N	N	0	0	3	1.06784067295897	0.769838624691351	1.06784067295897	0.769838624691351	2	-	-	0.60524179975777
140895	GGGTGGCAGAGCCACTGCATGGCAGGAGGCACTGAGCCACTCTGTGCCAGGCAGGCCTGGCGGGCACTGCTCAGGAAGAAGCGTGTCAGAAAATGCAAGGCCCGTGGGAGACTGGTCTTCACTCTCAATGCAGCCGCCACATAGATCTCGGCCAGCGTCGCCACAGACACGGCATCCCCTGCACACTCTGCCAGGTTCAGGGCACTCAGCGCCAGGTTGGTGGCAGTGAGGTGCCCGCCTGTGTGCTTCCCCATGGTGTGCAGCTGGTGCAGCTTATGGTAGACCAGGGCTGCGTCTCGGGCGCTGGCGCT|AGCATGAGCTTCACCACTCGCTCCACCTTCTCCACCAACTACCGGTCCCTGGGCT	1	0.103112297200556	0.254583648908217	0.223418152789081	N	N	3.47548383761281	3.37249557952564	3.37249557952564	splitr	22	0.236363636363636	0.236363636363636	0	N	0.236363636363636	N	N	8126	31732	ENSG00000072310	ENSG00000111057	-	-	17	12	17740325	53346684	coding	utr5p	SREBF1	KRT18	17714653	53342655	-	+	0.236363636363636	17719831	53342955	+	-	Y	-	0.205498867873191	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.471836576423731	0.827783467410055	0.471836576423731	3	-	1262.5	0.60524179975777
138399	CAGGCTGATATCTTTAAACTGACCATCTGGCATAACAGCTGTGGCTTTGAAGTTGGGGGCAGGGTGCCCAATTTTAGCATTTCCTGAAGACATCTTCCTATCAGCAGTCCCAACACAAGTCGCAGAAACTAACCACCGACACCAGGCAAGAACAAGACGCGCA|TTTTCGTCTGATCCGTCCTAATCACAGCAGTCTTACTTCTCCTATCTCTCCCAGTCCTAGCCGCTGGCATCACTATACTACTAACAGACCGTAACCTCAACACCACCTTCTTCGACCCAGCCGGAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCTCATCCTACCAGGC	1	0.643828295372364	0.800133926999915	0.844771979185218	N	N	3.17460825325918	3.59165088163073	3.17460825325918	splitr	0	0	0	0	N	0.0184049079754599	Y	N	9078	0	ENSG00000117450	ENSG00000237973	-	-	1	1	45988719	567996	utr5p	intron	PRDX1	RP5-857K21.6	45976708	566454	-	+	0	45987559	567001	+	-	N	-	1	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	0	0.60524179975777
125787	TCTTCCCAGTCATTAGTGAGGCTCTTGTAGAATTCTCCATACTCCTCTTGGGTGATGTCATCAGGGTTTCTGGTCCAAATAGGCTTGGTCTTGTTTAGTTCTTCCTGATCAATGTATTTCTCTTTGATCTTCTTAGTTTTCTTCTTCTTATCCTTACCGC|CATCATCCTAGTCCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGCGGACTAATCTTCAA	1	1	0.704121951840997	0.776581847210919	N	N	3.05058206856288	3.14484171727181	3.05058206856288	splitr	21	0.0476190476190477	0.0476190476190477	0	N	0.0680272108843537	N	N	21328	3	ENSG00000096384	ENSG00000230021	-	-	6	1	44221620	659930	coding	intron	HSP90AB1	RP5-857K21.4	44214824	536816	+	-	0.0476190476190477	44218161	568346	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	6	0.158273381294964	4	2	4	1	N	N	0.158273381294964	0	4	1.15061901969998	1.17545252372228	1.17545252372228	1.15061901969998	1	-	0	0.60524179975777
73560	AAAAATACCAAAAAAAAAAAAAAAAAAAAAAAAATTAGCCAGGTGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCCTGAACTTGGGAGGAGGAGGTTGCAGTAAGCTGAGATCATGCCATTGCACTCTAGCCTGAGCAACAAGAACAAGACTCCACCTCAAAACAAAAACAAAAACAAAACAAAACAAAAAAAGACTGGGCATGGTAGCTCATGCCTGTAATCCTAGCACTCTGGGAGGCTGAAGTGGGCGGATTGCCTGAGCTCAGGAGTTCGAGACCAGCCTG|CCAGCCTGGCCAACATGGTGAAACCCCGTC	1	0.0160249741725384	0.899266171301115	0.897571427984624	N	Y	3.57336771439491	3.44986453067864	3.44986453067864	splitr	340	0	0.666666666666667	0	N	0	N	N	566	852	ENSG00000110723	ENSG00000106789	-	-	11	9	108464465	100954922	utr3p	utr3p	EXPH5	CORO2A	108376158	100883257	-	-	0	108379032	100886288	+	+	Y	-	-	N	SKBR3_13_2_1	60	1	57.5	55	2	1	N	N	1	0.87037037037037	2	0.620837600557541	0.44700307240143	0.620837600557541	0.44700307240143	2	-	-	0.60524179975777
94071	GGCTTTCCCGCTTCGTGAGTGTGGGGTGGCTGGGGGGGGGGGGGGGGGGCCG|TTGTCGATCTGCAGGACAATCCTGGAGTTCTCAATGGTGGCACCAAGAATCTCTAGCTCGCCGTTGGCCGCCTCCAGGGCGCGCACCTTGTCCAGGTAGGAGGCCAGGCGGTCGTTGAGGTTCTGCATGGTTAGCTTCTCGTTGCCCGCCAGCAGCCCGTCGGACGCGGTCAGGACGCCGCCGTAGCCGCCGCCGTAGGCCCCCGAGGAGGACGAGGACACAAAGCGGGCGGAGGACACGGATACGCCGCGGCCG	1	1	0.311204357582937	0.306030290211129	N	N	2.35725323289171	3.72146071989581	2.35725323289171	splitr	0	2.22044604925031e-16	2.22044604925031e-16	0	N	0.115384615384616	N	N	849	58670	ENSG00000071894	ENSG00000171345	+	+	8	17	145634753	39684560	intron	coding	CPSF1	KRT19	145618444	39679869	-	-	0	145625522	39681476	-	-	Y	-	-	N	SKBR3_13_2_1	26	0.428571428571429	8.75	1	5	1	N	N	0.428571428571429	0	8	0.463558741749631	1.64728910014601	1.64728910014601	0.463558741749631	1	-	-	0.60524179975777
141106	TCAGTTTTTTATCAGCTCATTTGGGAAGGTTTTTTTTTTTTTTTTTTTTTTTT|TATGAAGTTGCTGTTTATTTTTTTTGGCCTGTTTGATGTATGTGTGAAACAATGTTGTCCAACAATAAACAGGAATTTTATTTTGCTGAGTTGTT	1	0.114811196399023	0.704121951840997	0.776581847210919	N	N	2.18755747063037	2.99720337251751	2.18755747063037	splitr	29	0.415094339622642	0.415094339622642	0	N	0.490566037735849	N	N	522	14698	ENSG00000114790	ENSG00000187514	-	-	3	2	153975616	232578251	utr3p	utr3p	ARHGEF26	PTMA	153838792	232571605	+	+	0.415094339622642	153974341	232578149	-	-	Y	-	3.36161282468137	N	SKBR3_13_2_1	56	0.54	35.5	15	2	1	N	N	0.54	0	2	0.413891733705027	0.678782443276245	0.678782443276245	0.413891733705027	2	-	143	0.60524179975777
118966	ACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCAC|CTGCGGCAGCCCCTCCCAGCCTACCCCTCCTGCGCTGCCCCAGAGCCTGGGAAGGAGGCCGCTATGCAGGGTAGCACTGGGAACAGGAGACCCACCTGAGGCTCAGCCCTAGCCCTCAGCCCACCTGGGGAGTTTACTACCTGGGGACCCCCCTTGCCCATGCC	20	0.527291025005345	0.0773225838142789	0.271226447279399	N	N	3.5010341561346	2.89930591536628	2.89930591536628	splitr	7	0	0	0	N	0.151515151515151	N	N	0	64916	ENSG00000251948	ENSG00000170421	+	+	19	12	24184165	53298868	intron	utr3p	AC092279.1	KRT8	24184075	53290971	-	-	0	24184148	53291207	+	+	Y	1	0.827544719867471	N	SKBR3_13_2_1	48	1	20	4	3	1	N	N	1	0	3	0.711893781972647	1.23339736644098	1.23339736644098	0.711893781972647	3	0	2599.66666666667	0.60524179975777
82037	CTGCATCCCGGAGGCAGCTCATATAGCGGGGCGTGCAGAAGCCACCTGCCCGAGTGCCACGGCGCCGCGAACGCTTCTGCCCATTGCGTTCACCCCAGGCTGTTTTCCGTTCATCCACTTTAGGGACCAGGAGGCCACTAAACCATGACATGTTGCT|TCTCCTCCCCTGAGTGTTGGTCCATTTGCACTCTCACAGATCTGCTGTTCTTCATACCACCGGCTCCCACAGCCACAG	1	0.623065182742681	0.800133926999915	0.844771979185218	N	Y	3.5319270478477	3.37655331069169	3.37655331069169	splitr	235	1	0	0	Y	0	N	N	2809	0	ENSG00000174233	ENSG00000227059	-	-	12	12	49177877	133812681	utr5p	downstream	ADCY6	AC226150.2	49159975	133794898	-	-	0	49177223	49181494	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	2	N	N	0	0	3	0.935395318173362	0.488392245771932	0.935395318173362	0.488392245771932	2	-	-	0.60524179975777
106715	GCCCTGCAGAACAGGGGTGTGTGTGTGTGTGTGT|GTGTGTGTGTGTATGTGCGTGTGCGTGCACATGTGTGCCTGCGTGTTGGTATAGGACTTTAAAGCTCCTTTTGGCATAGGGAAGTCACGAAGGATTGCTTGACATCAGGAGACTTGGGGGGGATTGTAGCAGACGTCTGGGCTTTTCCCCACCCAGAGAATA	2	0.525604192486025	0.90228347227338	0.95496900636454	N	N	2.7671990204288	2.58988256900358	2.58988256900358	splitr	37	0.411764705882353	0.411764705882353	0	N	0.823529411764706	Y	N	13	447	ENSG00000161267	ENSG00000134107	-	-	3	3	197300194	5027008	utr3p	utr3p	BDH1	BHLHE40	197236654	5020801	-	+	0.411764705882353	197237488	5025529	+	-	N	-	1.06132580424446	N	SKBR3_13_2_1	4	0.904761904761905	3.5	3	2	1	N	N	0.904761904761905	0	2	0.695338112624446	0.827783467410055	0.827783467410055	0.695338112624446	3	-	11.5	0.60524179975777
133549	AGGCTTTAAGAAGGCTTGTCATTTTAGGGCTAAATTTTAATAGAATGTGAGTCTGAACTCTTACATTTAGAACAAACAAAACCTTAAAATTACTGATTGGTTCAAAAAATGGTTTTATGGAAAAATTAATCTGTAACAAAAAGTTGGCATTGAGTGCGAAGGCTCC|CCCCTTTTTTTTTTTTTTTTGTTTTTTTTTTTGTTTGAGATGGAGTCTTGCTCTGTT	4	1	0.592534894166156	0.637740433842208	N	Y	3.73552766966605	1.7455692066817	1.7455692066817	splitr	65	0	0.491228070175438	0.5	N	0.596491228070176	N	N	6412	376	ENSG00000136238	ENSG00000133424	-	-	7	22	6443608	34318829	utr3p	intron	RAC1	LARGE	6414154	33561991	+	-	0	6442176	33899225	-	-	Y	0.799484976923571	1.77545804544351	N	SKBR3_13_2_1	270	0.517241379310345	193.5	117	2	1	N	N	0	0.517241379310345	2	0.546337088490636	0.480114411097832	0.546337088490636	0.480114411097832	1	170	6.5	0.60524179975777
141245	TCTGTTTGGCCATTTCCTTCTTTCGTTTTCCAGGTGCTTCTTTGACAGGCTCTTCCTCCTCCTCTTCTTCCTCCTCCTCATCATCTTCATCATCATCATCATCTTCCTCATCGTCATCGTCATCCTCATCATCTTCGTCATCCT|CATCATCCCCACCATCATAGCCATCATCACCCTCCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACACTACTCCCTATATCTAACAACGTAAAAATAAAATGACAGTTTGAACACACAAAACCCACCCCATTCCTCCCCACACTCATCG	1	0.394463044055408	0.899266171301115	0.897571427984624	N	N	2.68566045345254	2.98142742519895	2.68566045345254	splitr	7	0.0208333333333334	0	0	N	0	N	N	7868	0	ENSG00000115053	ENSG00000225630	-	-	2	1	232348352	566063	coding	intron	NCL	RP5-857K21.8	232318242	565020	-	+	0.0208333333333334	232326295	565847	+	-	Y	-	1	N	SKBR3_13_2_1	2	0.112676056338028	2	2	2	2	N	N	0.112676056338028	0	2	0.587726261861139	0.827783467410055	0.827783467410055	0.587726261861139	1	-	0	0.60524179975777
138275	GGGGAGGGTATTATACTGCCTCAGTCTGACTCCTCAACCCAGCAGCAATTTGAGGGGATGAGGGGGAAGAGGAGCTGCCTTTTGGAGGCCCCCTTCACCTGCAGCTATGATGCCCTTCCCCTTCTCCCCTGTCCTCACCATATGCCTTATCCCCATTCTA|GTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAAGAAT	1	1	0.205558172728075	0.155228020814782	N	N	3.09292782380399	3.55401162459584	3.09292782380399	splitr	16	0	0	0	N	0	N	N	1152	8	ENSG00000147955	ENSG00000169218	+	+	9	1	34637806	38100595	utr3p	utr3p	SIGMAR1	RSPO1	34634719	38076951	-	-	0	34635087	38077364	-	-	Y	-	-	N	SKBR3_13_2_1	3	0	3	3	2	1	N	N	0	0	2	0.703615947298547	0.44700307240143	0.703615947298547	0.44700307240143	2	-	-	0.60524179975777
84160	GGTATGCTGTTCGAATTCATAAGAACAGGGAGGTTAGAAGTAGGGTCTTGGTGACAAAATATGTTGTGTAGAGTTCAGGGGAGAGTGCGTCATATGTTGTTCCTAGGAAGATTGTAGTGGTGAGG|TCGGGTGTGTTATTATTCTGAATTTTGGGGGAGGTTATATGGGTTTAATAGTTTTTTTAATTTATTTAGGGGGAATGATGGTTGTCTTTGGATATACTACAGCGATGGCTATTGAGGAGTATCCTGAGGCATGGGGGTCAGGGGTTGAGGTCTTGGTGAGTGTTTTAGTGGGGTTAGCGATGGAGGTAGGATTGGTGC	1	1	0.261533274614987	0.233421673643755	N	N	3.62401792349119	3.12486313285679	3.12486313285679	splitr	32	0.112	0.112	0	N	0.112	Y	N	17065	19641	ENSG00000198888	ENSG00000198695	-	-	MT	MT	4262	14673	coding	coding	MT-ND1	MT-ND6	3307	14149	+	-	0.112	4014	14561	-	+	N	0.899281549698592	-	N	SKBR3_13_2_1	4	0	3.5	2	4	2	N	N	0	0	4	1.04300716893667	1.42378756394529	1.42378756394529	1.04300716893667	3	675.75	-	0.60524179975777
117148	TGCCTCGAAATGGACCCCAACTGCTCCTGCTCGCCTGTTGGCTCCTGTGCCTGTGCCGGCTCCTGCAAATGCAAAGAGTGCAAATGCACCTCCTGCAAGAAGAGCTGCTGCTCCTGCTGCCCTGTGGGCTGTGCCAAGTGTGCCCAGGGCTGCATCTGCAAAGGGACGTCAGACAAGTGCAGCTGCTGTGCCTGATGCCAGGACAGCTGTGCTCTCAGATGTAAATAGAGCAACCTATATAAACCTGGAT|TTTTTTTTTTTTTTTTTTGTACAGACAAGGTCTTGCCACGTTGCCCA	2	0.358385729784284	0.871805782194921	0.947136850676906	N	Y	3.54040868314203	2.95175417516741	2.95175417516741	splitr	31	0.48936170212766	0.48936170212766	0.333333333333333	N	0.48936170212766	N	N	660	0	ENSG00000187193	ENSG00000162733	+	+	16	1	56718108	162750237	utr3p	intron	MT1X	DDR2	56716336	162601163	+	+	0.48936170212766	56718016	162628470	+	+	Y	-	1	N	SKBR3_13_2_1	48	1	39.3333333333333	29	3	1	N	N	0	1	3	0.90228397947696	0.422169568379128	0.90228397947696	0.422169568379128	1	-	0	0.60524179975777
138297	AGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGC|CCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCACCATTTACCTGTGCTTCATTGAATTTCTTCAATTTGACATTCAGAGCACTGGGCAGAAATCACAT	1	0.83182278113738	0.311204357582937	0.306030290211129	N	N	3.23527702852946	3.47552369040616	3.23527702852946	splitr	4	0	0	0	N	0	N	N	83603	0	ENSG00000130600	ENSG00000252197	-	-	11	8	2022700	70602417	intron	intron	H19	AC091047.1	2016406	70602344	-	-	0	2018908	70602403	+	-	Y	-	1	N	SKBR3_13_2_1	7	1	6	5	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
141722	CAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCATGGTGAAGAGACATGA|GGGTGTAGAAGAGAAGAAGAAGGTTCCTGCTGTGCCAGAAACCCTTAAGAAAAAGCGAAGGAATTTCTCAGAGCTGAAGATGAAGCGCCTGAGAAAGAAGTTTGCCCAAAAGATGCTTCGAAAGGCA	1	0.891382498953717	0.20555784636729	0.155228020814782	N	N	3.59887818012334	3.33524062522047	3.33524062522047	splitr	16	0.0114942528735631	0	0.5	N	0.0459770114942529	N	N	0	406	ENSG00000137571	ENSG00000135241	-	-	8	7	70747299	108210110	intron	intron	SLCO5A1	PNPLA8	70584568	108110866	-	-	0.0114942528735631	70602326	108150682	-	-	Y	1	0.889826879673447	N	SKBR3_13_2_1	48	1	37.5	27	2	1	N	N	1	0	2	0.504947915120133	0.811227798061854	0.811227798061854	0.504947915120133	2	0	13.5	0.60524179975777
131163	CTCAGCCTGGTCAGCCAGGAGCTTCTTGCGGGCCTTGTCTGCCTTCAGCTTGTGGATGTGTTCCATGAGAATCCGCTTGTTTTTGAACACATTCCCCTTCACCTTCAGGTACAGGCTGTGATACATGTGGCGATCGATCTTCTTAGATTCACGGTATCTTCTGAGCA|GCCGGCGCCCGCCCCCCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCCCCCCCGCGAAGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAG	1	0.116988206225521	0.20555784636729	0.155228020814782	N	N	3.63759035972147	2.52524511722093	2.52524511722093	splitr	8	0	0	0	N	0.0179640718562875	N	N	129759	0	ENSG00000108298	ENSG00000212932	-	+	17	21	37360980	48111157	coding	upstream	RPL19	RPL23AP4	37356536	48110676	+	+	0	37359320	9827285	-	+	Y	-	-	N	SKBR3_13_2_1	18	1	8	2	4	3	N	N	0	1	4	1.30789787850789	1.16717468904818	1.30789787850789	1.16717468904818	1	-	-	0.60524179975777
73161	GACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCTAATCCAGGAAAAGAGTACAAAACGCCACATTCTCACTTGTATTGGGAGCTGAAAAATGGGATCACATGGACGCAG|AAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCG	1	0.0064153188288652	0.311204357582937	0.306030290211129	N	N	3.48383749183115	3.58320909912975	3.48383749183115	splitr	14	0.0362318840579712	0	0.666666666666667	N	0	N	N	0	0	ENSG00000212932	ENSG00000162669	+	+	21	1	48111157	91870426	upstream	intron	RPL23AP4	HFM1	48110676	91726323	+	-	0.0362318840579712	9827658	91853038	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.33333333333333	1	1	2	N	N	1	1	3	0.918839648825161	0.836061302084155	0.918839648825161	0.836061302084155	3	-	0	0.60524179975777
114143	GCAACAAGAGCAAAACTCCATCTCAAAAAAAAAAAAAAAAAAA|GAAACTGAGCCTTAAAGAGATGAAATAAATTAAGCAGTAGAT	1	0.00283746142407202	0.447538936456759	0.5	N	Y	2.34621094451764	3.21808036422602	2.34621094451764	splitr	85	0.5	0.261904761904762	0	N	0.30952380952381	N	N	1541	3068	ENSG00000110696	ENSG00000065361	+	-	11	12	16778649	56497128	intron	utr3p	C11orf58	ERBB3	16634679	56473892	+	+	0.5	16778474	56496765	+	-	Y	-	-	N	SKBR3_13_2_1	6	0.38	5	4	2	1	N	N	0.38	0.0192307692307692	2	0.413891733705027	0.827783467410055	0.827783467410055	0.413891733705027	3	-	-	0.60524179975777
136416	GGAGGACTTCAAGAACAAGTATGAGGATGAGATCAATAAGCCTATAGAGATAGAGAATGAATTTGTCCCCATCCGTTCATGCGGATGAAGCTTACATGAACAAG|TATGAGGATGAGATCAATAAGCATACGGAGGTGGAGAATGAATTTGTCCTCATCAAGAAGGATGTTGATGAAGCTTACATGAACAAGGCAGAACTGGAGTCCCTCCTGGAAGGGCTGACTGACGAGATCAACTTCCTCAGGCAGCTGTATGAAG	2	1	0.226190941649262	0.313727891882291	N	N	3.82232940528072	3.38076952815728	3.38076952815728	splitr	0	0.0769230769230769	0.182692307692308	1	N	0.096153846153846	N	N	51	751	ENSG00000178184	ENSG00000222039	-	-	18	9	78005429	102068893	downstream	coding	PARD6G	KRT8P11	77915115	102067394	-	+	0.182692307692308	41901574	102067976	-	-	Y	-	1.13752377355041	N	SKBR3_13_2_1	20	0	16	12	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	4	-	214	0.60524179975777
133072	GCCACTTGGCGAAGTCAGCTCCGTCCTTCTTGTACTGGGCACAGCGCTCAGACAGCCCATCCAACCCTTGGGTGGTAGTCTCGCCATTTGTCCCTGCCAGGGGGACCACGCCCTTGTCTACCTTGATGCCCACAACACCGCCCTTGGATTTGATAACTTGGGGGAAGGGACGCCCATCATCCGCCTTCTGGTAGAGTGTCTCATGGAAGAGGATGACACCCCCAATGCAGGGGTTCACGCGGTCGTCAGCTGTCAGC|CAGGAGCTTCTTGCGGGCCTTGTCTGCCTTCAGCTTGTGGATGTGTTCCATGAGAATCTGCTTGTTTTTTAACACATTCCTCTTCACCTTCAGGTACAGGCTGTGATACATGCGGCGATCAATCTTCTTAGATTCACGGTATCTTCTGAGCAGCCGGTGCAGAATCCTCATTCTCCTCATCCACGTGACCTTCTCTGGCATTCGGGCATTGGCTGTACCCTTCCGCTTACCTATGCCCATATGCCTGCCCTTCCGGCAGGCCAAGGTGTTTTTCCGGCATCAAGCGGGGGAATGGACCATCACAGGCTTGCGGATGATCAGCCCATCTTTGATCAGCTTCCGGATCTGCTGA	1	2.55324403728901e-12	0.390564714822603	0.421349522516249	N	N	3.44615838200292	3.33953654827276	3.33953654827276	splitr	8	0.0194552529182879	0	0	N	0	N	N	37145	0	ENSG00000149925	ENSG00000224415	-	-	16	7	30081741	102782386	coding	intron	ALDOA	RP11-401L13.4	30064444	102781796	+	-	0.0194552529182879	30078847	102781922	-	-	Y	-	1	N	SKBR3_13_2_1	4	0	3.5	3	2	1	N	N	0	0	2	0.471836576423731	0.827783467410055	0.827783467410055	0.471836576423731	2	-	0	0.60524179975777
141336	ACACCCAGTGTGTAAGCCAGAAGGGCATGCTCTCGGGTCTGCCCATTCTTGGAGATACCAGCTTCAAATTCACCAACACCAGCAGCAACAATCAGGACAGCACAGTCAGCCTGAGATGTCCCTGTAATCATGTTTTTGATGAAGTCCCTGTGTCCTGGGGCATCAATGATAGTCACATAGTACTTGCTGGTCTCAAATTTCCACAAGGAGATATCAATGGTGATACCACGTTCACGCTCAGCTTTCAGTTTATCCAAGACCCAGGCATACTTGAAGGAGCCCTTTCCCATCTCAGCAGCCTCC|ATCATCACCTCAACCCAAAAAGGCATAATCAAACTTTATTTCCTCTCTTTCTTCTTCCCACTCATCCTAACCCTACTCCTAATCACATAATCTATTCCCCCGAGCAATCTCTAGTACAATATACACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAAAGCCC	1	1.55752815870343e-08	0.375556752806067	0.399915574091196	N	N	3.44293538151387	3.08255723040904	3.08255723040904	splitr	9	0	0	0	N	0.0372340425531916	N	N	1	31	ENSG00000105889	ENSG00000132570	+	+	7	5	22672544	134343649	intron	intron	AC099759.1	PCBD2	22459063	134240596	-	+	0	22551487	134260427	+	+	Y	1.04543389368469	1.2575464834446	N	SKBR3_13_2_1	34	0	29.3333333333333	24	3	1	N	N	0	0	3	1.24167520111508	0.877450475454658	1.24167520111508	0.877450475454658	2	0	0.666666666666667	0.60524179975777
136007	GGCTAACCCTCTGGTCCAGGCAAAAATGGAAGCAATGGGATTGGTGGACGTCTCCTGTCCTTTCTGGTACATGCGGTAGTGACGGGTTACAGTCCCG|GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACGTGGCCATAGGTGAGCAGAAGGGTACAGCCAATGCCCGAATGCCAGAGAAGGTCACATGGATGAGGAGAATGACGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACACGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAGACAAGCGGATTCTCATGGAACACATCCACAAGCTGA	1	0.522652924309353	0.311204357582937	0.306030290211129	N	N	3.59321831773393	3.34000055658918	3.34000055658918	splitr	19	0.123711340206186	0.0515463917525771	0	N	0.0515463917525771	N	N	810	0	ENSG00000138413	ENSG00000218227	-	-	2	5	209130798	177483195	coding	intron	IDH1	RP11-889L3.1	209100951	177482605	-	+	0.123711340206186	209104651	177482784	+	-	Y	-	1	N	SKBR3_13_2_1	6	0	4	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
84549	GCCAAATTCGTTGTCATACCAGGAAATGAGCTTGACAAAGTGGTCGTTGAGGGCAATGCCAGCCCCAGCGTCAAAGGTGGAGGAGTGGGTGTCGCTGTTGAAGTCAGA|GGAGACAGTGCTGCGGCAGGCCATTGCCGAGCGCATCAAGCCTGTGCTGATGATGAACAAGATGGACCGCGCCCTGCTGGAGCTGCAGCTGGAGCCCGAGGAGCTCTACCAGACTTTCCAGCGCATCGTGGAGAACGTG	1	0.640719713845295	0.612610548302747	0.693969709788871	N	N	3.22908279980674	3.59590695188967	3.22908279980674	splitr	12	0.0370370370370371	0.0370370370370371	0	N	0.0370370370370371	N	N	20857	36789	ENSG00000256901	ENSG00000167658	+	-	12	19	6647316	3985461	utr5p	coding	AC006064.3	EEF2	6645876	3972316	-	-	0.0370370370370371	6647074	3983000	-	+	Y	-	-	N	SKBR3_13_2_1	10	0	5.33333333333333	1	2	1	N	N	0	0	3	1.06784067295897	1.17545252372228	1.17545252372228	1.06784067295897	2	-	-	0.60524179975777
51515	CCTTATACATACATTGTTTGGCTGTAGAATTCTAAAATCATGTTTTCCAAAATGTTTTTATCCCAAATCACAGAATGATTATAGCAAAGGAATACATAAGTCATTCAATTTGCTTCTCAATGTGTTAACCACAGAGAATTATTTGCTCATTTGGTAAACATTACCTCATCCGCTTCTTCA|CCTTCTTCATCATAAACATCATCATCAACTTCAATAGCTTCTCCAGTAAAGT	3	1	0.716823677278582	0.92722806243242	N	Y	3.41167176744019	3.10968340772996	3.10968340772996	splitr	232	0.923076923076923	0	0	N	0.942307692307692	N	N	4449	0	ENSG00000187109	ENSG00000254759	+	+	12	11	76478738	125938496	coding	intron	NAP1L1	NAP1L1P1	76438682	125937434	-	+	0.923076923076923	76443551	125938479	+	+	Y	0.162178101089625	1	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	3	0.45528090707553	0.438725237727329	0.45528090707553	0.438725237727329	1	193.666666666667	0	0.60524179975777
141657	TTTTATTGGAAACTAGGATTGTAACCCCTGCTTTTTTTTTTTTTT|AGCTCCCTAAAGACTGTAGCAGGATAAAAGGATCACTGGCTCCGAGTCTCTTTGAGATAACAAGTGATGAAATAAAAAAGAAAGCCCATACCCTCAAATAAGGTCAGGTAACCCCATTGCCCACCCTCCCTACAAGGTAAAAAATGAGTACTTTTAGTAACAGTTCAGAATTCATCTTTATCTCCTACCTGCCTCATCGGTGGAAGTTTAAAGTCATGATTTTTTTTAGACATTGATACTTGTGTCTATAGACAAATAAACTCATATTAGATGAC	2	0.0923709394657222	0.232990949158678	0.326303527982929	N	Y	2.91816330172877	3.51001030496889	2.91816330172877	splitr	21	0.466666666666667	0.466666666666667	0	N	0.466666666666667	N	N	3	4421	ENSG00000124334	ENSG00000069275	-	-	X	1	155251689	205719404	upstream	utr3p	IL9R	NUCKS1	155227246	205681947	+	-	0.466666666666667	78329020	205686640	-	-	Y	-	0.461891307182366	N	SKBR3_13_2_1	28	1	17.5	7	2	1	N	N	1	0	2	0.413891733705027	0.529781419142435	0.529781419142435	0.413891733705027	1	-	28.5	0.60524179975777
78826	CAAGATTCTTGGTGCCACCATTGAGAACTCCAGGATTGTCCTGCAGATCGACAATGCCCGTCTGGCTGCAGATGACTTCCGAACCAAGTTTGAGACGGAACAGGCTCTGCGCATGAGCGTGGAGGCCGACATCAACGGCCTGCGCAGGGTGCTGGATGAGCTG|ACCCGTGGAATCGAGAAAGAGCTATCAATCTGTCAATCCTGTCCGTGTCCAGGCTGGGTGAGTTTTCCCATGTTGAGTCAAATTAAGCTGCAGGCTCCACTCCTGGTGGTGCCCTTCTGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACTCCCCTCGGAACCCAA	1	1	0.467532148991838	0.526369772984128	N	N	3.55657227767559	3.60103760561896	3.55657227767559	splitr	4	0	0	0	N	0.0368098159509203	N	N	58670	1	ENSG00000171345	ENSG00000163046	+	-	17	2	39684560	133015542	coding	intron	KRT19	ANKRD30BL	39679869	132905164	-	-	0	39681176	133012454	-	-	Y	-	0.81549815498155	N	SKBR3_13_2_1	3	1	3	3	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	0	0.60524179975777
141472	CATAAACTTAACTCTGCAATCCAGCTAGGCATGGGAGGGAACAAGGAAAACATGGAACCCAAAGGGAACTGCAGCGAGAGCACAAAGATTCTAGGATACTGCGAGCAAATGGGGTG|CTGGAGGAGAGCTTGTGGGAGCCAAGGAGCACCTTGGACATCTGGAGTCTGGCAGGAGTGATGACGGGTGGAGGGGCTAGCTCGAGGCAGGGCTGGTGGGGCCTGAGGCCAGTGAGGAGTGTGGAGTAGGCGCCCAGGCATCGTGCAGACAGGGCGACATCAGCTGGGGACGATGGGCCTGAGCTAGGGCTGGAAAGAAG	1	0.466787698905324	0.899266171301115	0.897571427984624	N	N	3.56129235625094	3.33208798274832	3.33208798274832	splitr	20	0.0689655172413792	0.0689655172413792	0	N	0.103448275862069	N	N	31758	83603	ENSG00000196262	ENSG00000130600	-	+	7	11	44864163	2022700	utr3p	intron	PPIA	H19	44836279	2016406	+	-	0.0689655172413792	44841086	2018983	-	+	Y	-	2.80580689360098	N	SKBR3_13_2_1	32	0	27.5	23	2	1	N	N	0	0	2	0.45528090707553	0.827783467410055	0.827783467410055	0.45528090707553	2	-	5713.5	0.60524179975777
140760	CCACCAGCTTCCTGTAGGTGGCGATCTCGATGTCCAGGGCCAGCTTGACGTTCATCAGCTCCTGGT|CCTCACGCAAGCAACCGCATCCATAATCCTTCTAATAGCTATCCTCTTCAACAATATACTCTCCGGACAATGAACCATAACCAATACCACCAATCAATACTCATCATTAATAATCATAATGGCTATAGCAATAAAACTAGGAATAG	1	0.857250964338357	0.163782765099475	0.102428735043176	N	N	3.65913638023969	3.48118355279558	3.48118355279558	splitr	11	0.0151515151515151	0	0	N	0.0151515151515151	N	N	2377	0	ENSG00000167767	ENSG00000225630	-	-	12	1	52585784	566063	coding	intron	KRT80	RP5-857K21.8	52562780	565020	-	+	0.0151515151515151	52566063	565199	+	-	Y	-	1	N	SKBR3_13_2_1	28	0	28	28	2	1	N	N	0	0	2	0.480114411097832	0.786394294039552	0.786394294039552	0.480114411097832	1	-	0	0.60524179975777
138743	AGGCCCAGCACACGGGGCTCCCCGGCAGAGAAGGAATCCGACGGCTTGAGGAACTCCTGCGCCGAGCCCAGGATGACATTGCAGTCACGGTCAGTGCAGAGGAAGCAGCCGACCAGTGTCCGTCCATCTGTCATGCGAATGCGCATAGTCTTGTTGAGCAGCGCCTCTAGCTGCTGTCGGGCGCGCTCAGCCGCCGAGTCCTCGCGCTCTCCGTCCGAAT|CCTCTGCTTTTTCTCAGTTCCAGCTCCTTTCTCTTTCACGGTACCTCAGTTGCTTCTACTTTATCGGATAGTGTTGGAGATCATGGAGGGAAGGCAAATATACGCGCGGCTGAGCGGAGGCGAATCCGGAGCGCGAATCCGGGGCTCGGGCCCGTGGCCCCGCGGCGGTCCGGGAGGTCGGGGCGGGCGGTGGCGGCTGCGAC	25	1	0.648820961884372	0.436698557471933	N	Y	3.1117894000631	2.86845287644654	2.86845287644654	splitr	423	0.990147783251232	0.0147783251231527	0	N	0.985221674876847	N	N	609	0	ENSG00000183011	ENSG00000237647	-	-	17	8	7761172	1087777	coding	intron	LSMD1	CTD-3212A4.1	7760005	687651	-	+	0	7760515	923661	+	-	Y	-	1	N	SKBR3_13_2_1	4	0.0196078431372549	3.35483870967742	2	31	1	N	N	0	0.0196078431372549	31	1.87906847102082	1.68867827351651	1.87906847102082	1.68867827351651	2	-	0	0.60524179975777
130838	TGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGTTGCTGCTGTTGAAGCTGTTGCTGCTGCTGTTGTTGAAGCTGCTGCTGCTGTTGCTGCTGTTGAAGCTGTTGCTGCTGAAGTTGCTGTTGCTGTTGTAGCTGCTGCTGCTGCTGCTGCTG|CTGCTGCTGCTGCTGCTGCTGCTGCTAAAGTTCCAGCAAAAAAGATGACGGCCGCGAGTAAAAAGGCTTCAGCCCAGAAGGTTCCTGCCCAGA	14	1	0.123756195885017	0.405904957020356	N	N	2.39224612817561	2.78208287363953	2.39224612817561	splitr	27	0.225806451612903	0.225806451612903	0	Y	0.236559139784946	N	N	2327	0	ENSG00000167548	ENSG00000139239	-	-	12	12	49449107	63359764	coding	intron	MLL2	RP11-848D3.1	49415361	63359095	-	+	0.225806451612903	49426751	63359556	+	-	N	-	1	N	SKBR3_13_2_1	114	1	66	18	2	1	N	N	1	0.319148936170213	2	0.45528090707553	0.778116459365451	0.778116459365451	0.45528090707553	1	-	0	0.60524179975777
141315	ATACCTTGGACTGCTGGATGTCAAAAGACAATACCTGGGGGTCATCTATGAGATCTGAACAAATAGAGGAATTCTCTAGGACTGTATACTCTCTATTTTGGCTTTTTGAATGAAGTACAGACAGGCTTCTCTGCTATCCTCCAGGCAGTGTAATAGTCAAGGAAAAGGGC|TTGGCGGAATCAGCGGGGAAAGAAGACTCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACGTGAGAGGTGTAGAATAAGTGGGA	1	0.649766975814567	0.800133926999915	0.844771979185218	N	N	3.50425715662364	3.51104337473878	3.50425715662364	splitr	4	0	0	0.75	N	0.177777777777778	N	N	12508	0	ENSG00000100219	ENSG00000226958	+	-	22	X	29196585	108297792	utr3p	intron	XBP1	RN28S1	29190543	108297361	-	-	0	29191143	108297575	+	-	Y	1.14298485870844	1	N	SKBR3_13_2_1	10	1	6	3	4	1	N	N	0	1	4	1.4403432332935	0.620837600557541	1.4403432332935	0.620837600557541	3	393.25	0	0.60524179975777
28187	GTGTCCCCAAAGGAGGGATGAGAATAGCTACTGAAGTCCTAAAGAGCAACCCTAACTCAAGCCATTGGCACACAGGCATTAGACAGAAAGCTGGAAGTTGAAATGGTGGAGTCCAACTTGTCTGGACCAGCTTAATGGTTCTACTCCTGGTAACATTTTTGTCTGTGGATGGCTTGCTTGGGT|ATGGAGAGTCGGCTTGACTACACTGTGTGGAGCAAGTTTTAAAGAAGCAAAGGTATAGCAGTTCCAAGTATTTT	2	1	0.419771231117896	0.626856592055952	N	N	3.30803474231284	3.64656650855576	3.30803474231284	splitr	0	0	0	1	N	0.864864864864865	N	N	0	0	ENSG00000166206	ENSG00000234741	+	+	15	1	27184686	173838020	intron	intron	GABRB3	GAS5	26788693	173833038	-	-	0.513513513513514	26890817	173834418	+	+	Y	1	1	N	SKBR3_13_2_1	1	0	1	1	0	2	N	N	0	0	3	0.463558741749631	0.480114411097832	0.480114411097832	0.463558741749631	2	0	0	0.60524179975777
109587	CAAAACCATACCTCTCACTTCAACCTCCCTCACCATTGGCAGCCTAGCATTAGCAGGAATACCTTTCCTCACAGGTTTCTACTCCAAAGACCACATCATCGAAACCGCAAACATATCATACACAAACGCCTGAGCCCTATCTATTACTCTCATCG|CTACCTCCCTCACCAAAGCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTC	3	0.977457932051343	0.130715914556096	0.197936974829114	N	N	3.44463079869307	2.88470975693593	2.88470975693593	splitr	10	0.116279069767442	0.116279069767442	0	N	0.197674418604651	Y	N	54817	3466	ENSG00000198786	ENSG00000228253	+	-	MT	MT	14148	8572	coding	coding	MT-ND5	J01415.25	12337	8366	+	+	0.116279069767442	13579	8468	+	-	N	-	-	N	SKBR3_13_2_1	4	0	3	2	2	4	N	N	0	0	2	0.546337088490636	0.827783467410055	0.827783467410055	0.546337088490636	4	-	-	0.60524179975777
137753	GCTGGAAGGCCGGGCTATGGAAGTGGATGTCCATGGCCTGCTGAGCCTCGTGTATCATCTCAAGGAAGGGCTGGAACATGGCGTGGAAGTTCAGGGGCTCGTACGGAGAGAAGGGCATCAAGCTGCGGACGATGCGGGACTTGGGAAAGAAGAAGTGAGGCCTCCGGTGGGGCAGGCTGAAGGGCAGGTAGTGGTAGGTAT|TAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAACA	1	1	0.12875022366714	0.0640797573534845	N	N	3.33528047801382	3.49384671043534	3.33528047801382	splitr	10	0	0	0	N	0	N	N	8126	0	ENSG00000120885	ENSG00000252318	-	+	8	2	27472548	133038738	coding	intron	CLU	AC097532.1	27454434	133038647	-	-	0	27462665	133038701	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.66666666666667	1	2	1	N	N	0	1	3	1.01817366491437	0.637393269905742	1.01817366491437	0.637393269905742	2	-	0	0.60524179975777
135433	AAGAGGATCAATGATTTTTTTGGTAGGTGCAATTGGATTTCCGTCACTATCATATTCTAGATTGTCTTCCTCTTCCTCCTGAACCACACCAGCAGTTGGGTTTTCTGCCATGTATCGAAAATAAGCTTCTTGGTCATCTTCCTCTTCAATGTCATCTCGAATACCCTTTACGTTTTTTCTTTCCTTGTCCTTTTCTTCAAGCCTCTTCATGTCTCT|TCACCGTGCCAGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCCTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCTGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGAC	12	0.000305500459266443	0.046719727323257	0.117662960066491	N	N	2.88779961867579	3.56761456604966	2.88779961867579	splitr	15	0.0185185185185185	0	0	N	0.0740740740740741	N	N	2434	0	ENSG00000198231	ENSG00000226958	-	+	17	X	61896676	108297792	coding	intron	DDX42	RN28S1	61851567	108297361	+	-	0.0277777777777777	61875410	108297634	-	+	Y	-	1	N	SKBR3_13_2_1	4	1	3.5	3	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
66186	TGCGGACATTGGCAGCCGCGGGCGGCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT|GCTGCTGCTGCTGCTGCTAAAGTTCCAGCAAAAAAGATCACCGCCGCGAGTAAAAAGGCTCCAGCCCAGAAGGTTCCTGCCCAGAAAGCCACAGGCCAGAAAGCAGCGCCTGCTCCAAAAGCTCAGAAGGGTCAAAAAGCTCCAGCCCAGAAAGCACCTGCTCCAAAGGCATCTGGCAAGAAAGCATAAGT	22	0.968821860324456	0.90497999778897	0.892829816191926	N	N	1.84579154314066	3.17932833183454	1.84579154314066	splitr	24	0.160919540229885	0.160919540229885	0	N	0.563218390804598	N	N	774	7767	ENSG00000204842	ENSG00000188846	-	-	12	3	112037480	40506549	coding	coding	ATXN2	RPL14	111890018	40498783	-	+	0.160919540229885	112036813	40503535	+	-	Y	-	-	N	SKBR3_13_2_1	38	0.583333333333333	19.5	1	1	1	N	N	0.583333333333333	0.126262626262626	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
24774	AAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACAGCCCCAGTCAAACTCCCCACCT|AATACTAACTACCTGACTCCTGCCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAATGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATGACATTCACAGCCATAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCCTGGCTATCATCACCCGATGAGGCAACCAACCAGAACGCCTGAACGCAGGTACATACTTCCTATTCTACACCCTAGTAGGCTCCCTCCCCCTACTCATCGCACTAATCTACACCCACAACACCCTAGGCTCACTGAATA	2	4.39577817586958e-07	0.226190941649262	0.313727891882291	N	N	3.36191729946799	3.38337003403037	3.36191729946799	splitr	9	0.0559999999999999	0	1	N	0.016	N	N	0	31	ENSG00000162669	ENSG00000132570	+	+	1	5	91870426	134343649	intron	intron	HFM1	PCBD2	91726323	134240596	-	+	0.0559999999999999	91853133	134263529	+	+	Y	1	1.2575464834446	N	SKBR3_13_2_1	4	1	3	2	2	3	N	N	1	0	2	0.44700307240143	0.629115435231642	0.629115435231642	0.44700307240143	2	0	1	0.60524179975777
119050	ACCACCACCCCATCATACTCTTTCACCCACAGCACCAATCCTACCTCCATCGCTAACCCCACTAAAACACTCACCAAGACCTCAACCCCTGACCCCCATGCCTCAGGATACTCCTCAATAGCCATCGCTGTAGTATATCCAAAGACAACCATCATTCCCCCTAAATAAATTAAAAAAACTATTAAACCCATATAACCTCCCCCAAAATTCAGAATAATAACACACCCGACCACACCGCTAACAATCAATACTAAACCCCCATAAATAGGAGAAGGCTTAGAAGAAAACCCCACAAACCCCATTACTAAACCCACACTCAACAGAAACAAA|GCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATT	1	0.000328158692153153	1	0.935920242646516	N	N	2.71932680117574	2.89405662813081	2.71932680117574	splitr	6	0.0168067226890755	0.0168067226890755	0	N	0.0084033613445378	Y	N	19641	3466	ENSG00000198695	ENSG00000228253	+	-	MT	MT	14673	8572	coding	coding	MT-ND6	J01415.25	14149	8366	-	+	0.0168067226890755	14662	8485	+	-	N	79.4403317152103	1.49407930352674	N	SKBR3_13_2_1	9	0	4.66666666666667	2	6	2	N	N	0	0	6	1.26650870513738	1.34928705187839	1.34928705187839	1.26650870513738	2	36.6666666666667	435.333333333333	0.60524179975777
92949	ATGTTCAACTGCTGTTCACATGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAAAATTTGCTACTACCACCAAGATCTGCA|CCTCCATCATCACCTCAACCCAAAAAGGCATAATCAAACTTTATTTCCTCTCTTTCTTCTTCCCACTCATCCTAACCCTACTCCTAATCACATAATCTATTCCCCCGAGCAATCTCTAGTACAATATACACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAAAGCCCCCGCACCA	3	1	0.672179231214042	0.0910743065647112	N	N	3.5319270478477	2.98996249365577	2.98996249365577	splitr	17	0.0674157303370787	0	0	N	0.134831460674157	N	N	0	31	ENSG00000252318	ENSG00000132570	+	+	2	5	133038738	134343649	intron	intron	AC097532.1	PCBD2	133038647	134240596	-	+	0.0674157303370787	133038719	134260432	+	+	Y	1	1.2575464834446	N	SKBR3_13_2_1	6	1	3.57142857142857	2	14	2	N	N	1	0	14	0.637393269905742	1.5810664227532	1.5810664227532	0.637393269905742	1	0	0.142857142857143	0.60524179975777
109736	CAGTGTGCACACTCTGTAGTATTTTCCGCATGCTGTGCCCAGTTCAATATTATTGCCACTCAAAGCTGGGCAGTTGTTAGCGAGAATGACCAATTTCGCTTTGCCTTGTCTGATCATCTTCAGAGTCTGCTTGTACCCCAGGACGTACTTCCCACTTTTCATAACGAGTTGGAGCCTAGAGTTGATCGACTCCAGCGACTTTTTCGTCTTCTTTGCGGCCACCATCTTCCTGCCTTAG|GGGCTCGCCCCCCCGCCTCACCGGGTCAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGGCCCGCAGGGCCGGCAGACCCCGCCCTGGACCCCTCGCGGGGACACCGGGGGGCGCCGGGGGCCTCCCACTTATTCTACACCTCTCACGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCCTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC	1	1.46579305530557e-13	0.163783040919641	0.102428735043176	N	N	3.30488209984069	3.16047610314525	3.16047610314525	splitr	1	0	0	0	N	0	N	N	7252	0	ENSG00000156482	ENSG00000226958	-	+	8	X	99058697	108297792	utr5p	upstream	RPL30	RN28S1	99037079	108297361	-	-	0	99057608	108297793	+	+	Y	-	-	N	SKBR3_13_2_1	5	1	5	5	2	1	N	N	0	1	2	0.827783467410055	0.75328295534315	0.827783467410055	0.75328295534315	1	-	-	0.60524179975777
31595	GCAACCTCACTTAGGGGTTTTAGGGGTTCTCCCTCCAGATTTGGTCCAGCAAATGAGGCTGAGTGACATAGTCCCTTGAATCACTTTCAAAGGAGCTCAGCTGAGGTGAGGAGAGCCTCTGGGATCTGGAGGTTACTAGGTTAGGGAAATGGATTAGTGTTTTTTTTTTTTTTTT|TGAAAAAGTCATGGAGGCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACT	4	1	0.0516469383892073	0.0590776741010631	N	N	2.5723906566241	3.40385247955516	2.5723906566241	splitr	4	2.22044604925031e-16	2.22044604925031e-16	0	N	0.0518518518518516	N	N	9780	3	ENSG00000161960	ENSG00000230021	-	+	17	1	7482324	659930	utr3p	intron	EIF4A1	RP5-857K21.4	7476024	536816	+	-	2.22044604925031e-16	7482019	568066	-	+	Y	-	0.828962371721779	N	SKBR3_13_2_1	3	0.468253968253968	2.25	2	4	1	N	N	0	0.468253968253968	4	1.35756488655249	1.01817366491437	1.35756488655249	1.01817366491437	2	-	0	0.60524179975777
140778	ACCACTTGGGCTCCCTGTTTGGAGTCTGGCTGGCTCTGAGCATTGCCAATGGCCCCTACTCACCTGACTTTGTATCCTCTCCTTTTAGAGGCTTTGCATTCTGCACCCAGCTTCACTAACAGTGGGCTGAAAACATCCTTGGGTTGAGTGTTTCATTTGGGAGTTATTTGGCCAGGGCCTTTTGAACAGTAGTGTCCCCATGAAGTGCTAGATAATATATGTGTAAGAGTCAGC|TTTTTTTTTTTTTTTTAACTCTAAAACTCATGCATTGTCCAGTGTGCA	4	0.70847974388354	0.527078097771839	0.858648013974686	N	Y	3.39760481766995	2.84752516064765	2.84752516064765	splitr	24	0	0.479166666666667	0	N	0.5	N	N	1225	59	ENSG00000148672	ENSG00000144468	+	-	10	2	88854627	227863931	utr3p	intron	GLUD1	RHBDD1	88810243	227700297	-	+	0.479166666666667	88810353	227727072	-	-	Y	-	0.717020246493175	N	SKBR3_13_2_1	177	1	108	39	2	1	N	N	0	1	2	0.488392245771932	0.45528090707553	0.488392245771932	0.45528090707553	2	-	2	0.60524179975777
115825	TTATTGCAGCCCTAGCAACACTCCACCTCCTATTCTTGCACGAAACGGGATCAAACAACCCCCTAGGAATCACCTCCCATTCCGATAAAATCACCTTCCACCCTTACTACACAATCAAAGACGCCCTCGGCTTACTTCTCTTCCTTCTCTCCTTAATGACATTA|ACACTATTCCTCATCACCCAACTAAAAATATTAAACACAAACTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAATTATAACAAACCCTGAGA	1	1	0.447538936456759	0.5	N	N	3.30590582204076	2.89359261981439	2.89359261981439	splitr	9	0.089108910891089	0.089108910891089	0	N	0.396039603960396	Y	N	37049	3466	ENSG00000198727	ENSG00000228253	+	-	MT	MT	15887	8572	coding	coding	MT-CYB	J01415.25	14747	8366	+	+	0.089108910891089	15472	8420	+	-	N	0.897850937697171	-	N	SKBR3_13_2_1	2	0	2	2	2	2	Y	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	3146	-	0.60524179975777
43605	CCTAGGATTGTGGGGGCAATGAATGAAGTGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTTTGTTATAGTTTTTTATTTTTATGGGCTTTGGTGAGGGAGGTA|GGTGGTAGCAGCCAATGACGGCCCCATGCCCCAGACCCGAGAGCACTTATTACTGGCCAGACAGGTACTCAGAGCCTGGGTAAGGATGCAAAAGGGAAGAGTGGGGAGTTGGGCCCCTCTGTATATTGTCCCTGTCTCTCTGGCATCTACAGATTGGGGTGGAGCATGTGGTGGTGTATGTGAACAAGGCTGACGCTGTCCAGGACTCTGAGATGGTGGAACTGGTGGAACTGGAGATCCGGGAGCTGCTCACCGAGTTTGGCTATAAAGGGGAGGAGACCCCA	1	0.000258276539893173	0.311204357582937	0.306030290211129	N	N	2.79108195041277	3.37808089400154	2.79108195041277	splitr	8	0	0	0	N	0	N	N	3	6421	ENSG00000230021	ENSG00000178952	-	+	1	16	659930	28857729	intron	coding	RP5-857K21.4	TUFM	536816	28853732	-	-	0	569018	28856335	-	+	Y	0.828962371721779	1.075967404152	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.538059253816536	0.745005120669049	0.745005120669049	0.538059253816536	2	0	526	0.60524179975777
82103	ACCACAGAACAAAACAGCAAGTCGGGCTTGGGCCGCCGGCTTCCAGGGCGCCCAGGACAGTGGGCGGGCGAGTGT|GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCCATAAAATGCATATGTAAATTTTTTTTTGTTTTTAAGCATTCACCCAAACAAAAAAATCACAGGTAAACCCATGTTTCTGAGATGCCATTATTCC	1	0.667950595747351	0.800133926999915	0.844771979185218	N	N	3.26936241550807	2.12663990958542	2.12663990958542	splitr	14	0.0133333333333333	0.0133333333333333	0	N	0.0533333333333333	N	N	28175	3425	ENSG00000117984	ENSG00000122565	-	-	11	7	1785222	26252976	utr3p	utr3p	CTSD	CBX3	1773982	26240782	-	+	0.0133333333333333	1774641	26252204	+	-	Y	-	-	N	SKBR3_13_2_1	2	0.0666666666666667	1.5	1	1	1	N	N	0	0.0666666666666667	2	0.45528090707553	0.827783467410055	0.827783467410055	0.45528090707553	3	-	-	0.60524179975777
137268	AATGGAGTGAGAGTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAACACAACAAA|AAAAACTGTCCTCTGAGGAGGCACAGGTGTGACAGATAAGGAACCTGCAGCTCAGATTCAACAGGCACCTGCCAAGTCCACACTCAGGACTGTGACAGCCTCAACAACATGAGGTCCAGACACATTCACTGTGGAAGGCTCTGCCCACGCGAACAAAGCTGTCAGCTCTAGCAAAAGGGACACTGCCTTCTTCCTCCCTCACTTCTCACCTGGTAAGCCCGGG	1	0.913570617737712	1	0.935920242646516	N	Y	1.77852823793458	3.52361324642271	1.77852823793458	splitr	39	0.547169811320754	0.566037735849056	0.5	N	0.584905660377358	N	N	0	1336	ENSG00000233084	ENSG00000089685	+	+	1	17	249231242	76221715	upstream	utr3p	AL672183.2	BIRC5	249230780	76210277	+	+	0.547169811320754	27383553	76220126	+	+	Y	-	1.45905570177993	N	SKBR3_13_2_1	72	0.388888888888889	54.5	37	2	1	N	N	0.388888888888889	0	2	0.44700307240143	0.827783467410055	0.827783467410055	0.44700307240143	2	-	33.5	0.60524179975777
114205	GACTAGAATAGGGTTCTTAAAATCAAGTATCAATACAAAATAGAACACAATTAAAATCTTAATTGTTGGCTGGGCACAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTTAGGAGAGCGAGACCATCCTGGCTAACACGGTGAAACCCC|GTCTCTACTAAAAATACAAAAAAATTAGTCGGGCGTGGTGGCGGACGCCTGTATTCACAGCTACTCGGGAGGTTGAGGCAGGAGAATGGGGTGAACCCGGGAGGAAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCCAGACTCCATCTCAAAGAAAAAAAAAAAATATTAAGAGGTTCTGCTGCCAGATGTGGGTTCTGTGGGT	1	0.748342200413785	0.899266171301115	0.897571427984624	N	Y	3.62039369541802	3.26407327547924	3.26407327547924	splitr	278	0.704545454545455	0.568181818181818	1	N	0.636363636363636	N	N	3458	198	ENSG00000157106	ENSG00000186532	+	-	16	17	18937776	1733170	utr3p	utr3p	SMG1	SMYD4	18816175	1682829	-	-	0.278409090909091	18819274	1684106	-	+	Y	-	-	N	SKBR3_13_2_1	43	0.835443037974684	28.5	14	2	1	N	N	0.677884615384615	0.835443037974684	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
133709	GTGGGAATGACAACTTCGGTCGTGGAGGAAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAGCCGTGGTGGTGGTGGATATGGTGGCAGTGGG|TTTGGGGATGGCTATAATGGGTATGGAGGAGGACCTGGAGGTGGCAATTTTGGAGGTAGCCCCGGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAGGAAATTATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTACGGTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAGGAAACTATGGTCCA	7	0.00252079186051181	0.251668682770654	0.622186063526583	N	N	2.90718621369839	3.16783138271386	2.90718621369839	splitr	39	0	0.141304347826087	0	N	0.358695652173913	N	N	12277	13407	ENSG00000135486	ENSG00000122566	+	-	12	7	54679028	26241149	coding	coding	HNRNPA1	HNRNPA2B1	54674488	26229547	+	-	0	54676630	26235506	+	+	Y	-	-	N	SKBR3_13_2_1	18	0.554347826086957	10.6666666666667	4	3	1	Y	N	0.554347826086957	0	3	0.76156079001725	1.10095201165537	1.10095201165537	0.76156079001725	1	-	-	0.60524179975777
135972	GCTTGGTTCTTCTCCAATGTCTCCTTTTGGAGTTGTACCTGATTTTATTTCCAGTTTTCATCCGAATCCACTGGGGAATGGGACGATTTTGCTTTTGTTTCTTGGCCAGGAATCGCTTAATCCTGAAAGTCTTGTGAGAAGACATGGCGAGCAGCGGAGTCAAGAACACACCACGATGGCGGAGAAAGGAAGAGGAGG|AAGCTTATCTATGAAAAAGCAAAGCACTATCACAAGGAATATAGGCAGATGTACAGAACTGAAATTCGAATGGCGAGGATGGCAAGAAAAGCTGGCAACTTCTATGTACCTGCAGAACCCAAATTGGCGTTTGTCATCAGAATC	3	0.625456440970476	0.130715914556096	0.197936974829114	N	N	3.28395857393842	3.34615493251855	3.28395857393842	splitr	21	0.0347222222222222	0.0347222222222222	0	N	0.0347222222222222	N	N	7032	62363	ENSG00000198918	ENSG00000147604	-	+	X	8	118925606	74208024	utr5p	coding	RPL39	RPL7	118920467	74202506	-	-	0	118925592	74204622	+	+	Y	-	2.29807865130153	N	SKBR3_13_2_1	252	0	104.666666666667	20	3	1	N	N	0	0	3	0.836061302084155	1.00161799556617	1.00161799556617	0.836061302084155	2	-	6983.33333333333	0.60524179975777
16931	TACCTACCTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGG|TCGCTCACACCTGATATCCTCCCTACTATGCCTAGAAGGAATAATACTATCACTATTCATTATAGCCACTCTCATAACCCTCAACACCCACTCCCTCTTAGCCAATATTGTACCTATCGCCATACTAGTCTTTGCTGCCTGCAAGGCAGCAGTAGGCCTAGCCCTACTAGTCTCAATCTCCAACACGTATGGCCTAGACTACGTACATAACCTAAGCCTACTCCAATGCTAAAACTAATTGTCCCAACAATTATATTACTACCACTGACATGACTCTCCAAAAAACACATAATTTGAATCAACACAA	1	2.54600287623806e-06	0.899266171301115	0.897571427984624	N	N	3.7061623612628	3.56591914887046	3.56591914887046	splitr	6	0	0	0	N	0	N	N	0	0	ENSG00000212932	ENSG00000198868	+	+	21	5	48111157	134264016	upstream	intron	RPL23AP4	CTB-36O1.4	48110676	134263720	+	-	0	9827127	134263951	+	+	Y	-	1	N	SKBR3_13_2_1	3	1	2.5	2	2	1	N	N	1	0	2	0.430447403053228	0.827783467410055	0.827783467410055	0.430447403053228	0	-	0	0.60524179975777
72549	CATCAAGCCCGAATGATATTTCCTATTCGCCTACACAATTCTCCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTGCCCTATTACTATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATATCCAAACAACAAAGCATA|TTTTATATCTTCTTCGAAACCACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCCTAGTAGGCTCCC	1	0.480654837201658	0.375556752806067	0.399915574091196	N	N	2.92035742234454	3.2948728812365	2.92035742234454	splitr	4	0	0	0	N	0.0826446280991737	Y	N	37049	93473	ENSG00000198727	ENSG00000198886	+	-	MT	MT	15887	12137	coding	coding	MT-CYB	MT-ND4	14747	10760	+	+	0	15691	11111	+	-	N	-	-	N	SKBR3_13_2_1	3	0	2.2	1	4	2	Y	N	0	0	5	1.27478653981148	0.869172640780558	1.27478653981148	0.869172640780558	2	-	-	0.60524179975777
138001	ACTTTAGGTCTTACAGCACGAACCCCTCGAAGTCTGCCTGGGCACACACCACATGCAGATTTTGGTGCTTTCCCAACCTTCTTGGTATAAAGGTAAACAATTCTATTACCAGGGGTTCGGGACAGCCTAGTTTTGTTAGAGGCTGTATTGTAGGAAAGCCTACGTCGGTATGTCAAACGCTGGACCATTCTGAGTGCTCAGAGTCTAATTTTGTTTGGAGTGGTGTCCAGAAAAGTGCCACGAG|GTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACC	1	0.00329127743010786	0.321839855309698	0.321669634186996	N	N	3.5587317031712	3.51001030496889	3.51001030496889	splitr	2	2.22044604925031e-16	2.22044604925031e-16	0	N	2.22044604925031e-16	N	N	7233	0	ENSG00000109475	ENSG00000162669	-	+	4	1	109551568	91870426	utr5p	intron	RPL34	HFM1	109541722	91726323	+	-	2.22044604925031e-16	109542806	91853085	-	+	Y	-	1	N	SKBR3_13_2_1	10	1	9.5	9	2	1	N	N	0	1	2	0.422169568379128	0.827783467410055	0.827783467410055	0.422169568379128	2	-	0	0.60524179975777
137367	CTGATCAGCCATGGTGCGAGCGAAGGGAGGAAGAGCAGAGGGAGCGAGGGTGGCTGCACCAGCGCGGGGGCTGCGACGGCGGGGGTA|ACTATGACTCTCTTAAGGTAGCCAAATGCCTAGTCATCTAATTAGTGACGTTCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGTGGAATCCGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGCCATGAGA	2	1	0.170189729447764	0.209300629116717	N	N	2.97528662963871	3.64656650855576	2.97528662963871	splitr	12	0.126436781609196	0	0.5	N	0.206896551724138	N	N	9025	0	ENSG00000198668	ENSG00000198626	-	-	14	1	90874617	238129359	utr5p	intron	CALM1	RYR2	90863327	237205505	+	+	0.126436781609196	90863500	237766411	-	-	Y	-	1	N	SKBR3_13_2_1	4	1	3.5	3	2	1	N	N	0	1	2	0.538059253816536	0.827783467410055	0.827783467410055	0.538059253816536	1	-	0	0.60524179975777
135390	GGGCAGAGATGATGACCCTTTTGGCTCCCCCCTGCAAATGAGCCCCAGCCTTCTCCATGGTGGTGAAGACGCCAGTGGACTCCACGACGTACTCAGCGCCAGCATCG|CCCCACTTCCATTTTGGCCAAACCAACCGCACCTCTGAATTTCTTCGCAAATTTCCTGCCGGCAAGGTCCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAACGCCATTGCCTACTATGTGAGCAATGAGGAGCTGCGGGGAAGTACTCCAG	1	1	0.526775457519482	0.600084425908804	N	N	3.59697987445291	3.30124852419771	3.30124852419771	splitr	17	1.11022302462516e-16	1.11022302462516e-16	0	N	0.0654205607476636	N	N	62936	492	ENSG00000111640	ENSG00000256322	-	+	12	7	6647537	132720699	coding	coding	GAPDH	AC008038.2	6643093	132719842	+	-	1.11022302462516e-16	6646113	132720575	-	+	Y	-	0.474949123917636	N	SKBR3_13_2_1	12	0	8	4	2	1	N	N	0	0	2	0.571170592512938	0.827783467410055	0.827783467410055	0.571170592512938	1	-	161	0.60524179975777
135548	GCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAG|GAAGAGGAGGAGGACGAAGAAGGAGAAGATGAGGAAGACGAGGACGATGAGGATGGTGAAGAAGAGGAGTTTGATGAAGAAGATGATGAAGATGAAGATGTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGAAGAAGAATTTGGACTTGATGAAGAAGATGAAGATGAGGATGAGGATGAAGAGGAGGAAGAAGGTGGGAAAGGTGAAAAGAGGAAGAGAGAAACAGATGATGA	6	0.524992879424133	0.378712451384142	0.781713615097424	N	N	2.48965841935669	2.50221559748837	2.48965841935669	splitr	46	0	0.306666666666667	0	N	0.173333333333333	N	N	14698	2326	ENSG00000187514	ENSG00000136938	+	-	2	9	232578251	100778225	coding	coding	PTMA	ANP32B	232571605	100745638	+	+	0	232577157	100767417	+	-	Y	-	-	N	SKBR3_13_2_1	5	0.588235294117647	3.66666666666667	2	3	1	Y	N	0.588235294117647	0.378378378378378	3	0.703615947298547	0.885728310128759	0.885728310128759	0.703615947298547	3	-	-	0.60524179975777
20109	CGAGGCCATCACATGTTGGTCCCCATATGCTGGATGAATAATACTTCTCATCTGGTTTAGGTCTCTTTTGCAGAAGGGGCTTTACATGTGCGTGGTCATAGAGTATGCAATTAAATGATCCATAGACGCCATCATTCACATAATACATAAAGGTCTGCTCACTCGACTCATCTTCGTCATCA|TCATCCTAGTCCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACC	1	0.141363808903879	0.254583648908217	0.223418152789081	N	N	3.45823374014688	3.12804628055249	3.12804628055249	splitr	2	0	0	0	N	0	N	N	1602	3	ENSG00000115758	ENSG00000230021	-	-	2	1	10588630	659930	coding	intron	ODC1	RP5-857K21.4	10580094	536816	-	-	0	10582142	568348	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	0	0.60524179975777
88223	CCGTGCGTAGACTGGTCAGCTTCCGGGGTGACTAGAGCAGGGCTGTGGTCACTTTCACTGGCATCTGGGTCCTGTCGTAGGATCAGCCGGTTTGGATGGTCTGGGTCTTGCTGGCTGGTCCACTTGTCCTGGGCTGCTGGTTTCAGCCGAC|GTGGTCGCCGCGGAACTTCAAGGGTCCTTCCTACCCGCGTTGCTGAGAGTCTGGGTTTACGCGTCACCTCGGGCGGGACCCGATCCTCCGCTCCTGAGGC	2	0.307637109029255	0.808744637905766	0.927294411452363	N	Y	3.38912318237562	3.5816815158199	3.38912318237562	splitr	251	1	0	0	N	1	Y	N	0	4336	ENSG00000213753	ENSG00000172270	+	-	19	19	59111168	583492	upstream	utr5p	AC016629.2	BSG	59084870	571310	+	+	0	567625	571441	+	-	N	-	0.0436484628965458	N	SKBR3_13_2_1	2	1	1.14285714285714	1	1	1	N	N	1	0.59349593495935	7	1.17545252372228	1.01817366491437	1.17545252372228	1.01817366491437	1	-	2.85714285714286	0.60524179975777
136554	CACACCCGGACGAGGGCCCTGCACCTAGAAGAAGGTGTTGGGCCTCTTGGTGGTGAAGCGTGGCTTGTGCTGACGGCGCAGGACCCGGTGGGGCAGCGGGAACTTGATCTTGGAGTCCTGTGAGGAAGGGAGGCATGTTGAGGGGGTTGGAAGCCTCTTAACACCCCATCCTGTGGGGCCACCAAGGTGTAGCCGCCCC|AGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACA	2	0.955769338327132	0.196734923242299	0.258789252325421	N	N	3.34615493251855	3.42680229220385	3.34615493251855	splitr	9	0	0	0	N	0	N	N	15959	0	ENSG00000105640	ENSG00000252318	-	+	19	2	17974962	133038738	intron	intron	RPL18A	AC097532.1	17970730	133038647	+	-	0	17973898	133038722	-	+	Y	9.17369915199125	1	N	SKBR3_13_2_1	16	1	12	8	2	1	N	N	0	1	2	0.827783467410055	0.521503584468335	0.827783467410055	0.521503584468335	3	2731	0	0.60524179975777
133129	GCTGCTGCCAGCTACACCTCCGTTGCCCAGGCCCTGGGATCAAACCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAA|GCTACTGCCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCCGATCACCTCTGAGACCCAACTTGCTCA	1	0.184229590710448	0.311204357582937	0.306030290211129	N	N	3.59272380419397	3.71037857872839	3.59272380419397	splitr	3	0.0361445783132528	0.0361445783132528	0	N	0.0361445783132528	N	N	83603	0	ENSG00000130600	ENSG00000235857	-	-	11	Y	2022700	59001635	intron	upstream	H19	CTBP2P1	2016406	59001391	-	+	0.0361445783132528	2018971	27454044	+	-	Y	-	-	N	SKBR3_13_2_1	14	0	12.5	11	2	1	N	N	0	0	2	0.827783467410055	0.612559765883441	0.827783467410055	0.612559765883441	3	-	-	0.60524179975777
20354	GCTCTGTCAACTCCGTCTCATTGAGGGTCCTGAGGAAGTTGATCTCATCATTCAGGGCATCCACCTTGGCCTCCAGCTCCACCTTGCTCATGTAGGCAGCATCCACATCCTTCTTCAGCACC|ACAAATTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACA	1	1	0.375556752806067	0.399915574091196	N	N	3.48333363072138	2.92767800679299	2.92767800679299	splitr	6	1.11022302462516e-16	0	0	N	0.0491803278688523	N	N	34840	3	ENSG00000135480	ENSG00000230021	-	-	12	1	52662180	659930	coding	intron	KRT7	RP5-857K21.4	52626954	536816	+	-	1.11022302462516e-16	52631341	569005	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	3	0	2.66666666666667	2	3	1	N	N	0	0	3	0.827783467410055	1.24167520111508	1.24167520111508	0.827783467410055	2	-	0	0.60524179975777
140841	TTTCCTTCTTGCCATTCTTGATCAGCTGGACCCTTACACACTTCCTAATGGCAGAATTTGGCTGTTTGGCTTCAACTCCTAC|ATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGGTTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTACACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACTG	2	1	0.106605727645676	0.0978048625560518	N	N	3.64553343878587	3.64553343878587	3.64553343878587	splitr	13	0.158536585365854	0.121951219512195	0	N	0.24390243902439	N	N	9018	3	ENSG00000186468	ENSG00000230021	-	-	5	1	81574396	659930	coding	intron	RPS23	RP5-857K21.4	81569177	536816	-	-	0.158536585365854	81573513	568500	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	9	0	7.5	6	2	1	N	N	0	0	2	0.529781419142435	0.827783467410055	0.827783467410055	0.529781419142435	3	-	0	0.60524179975777
89134	TTTCGTTCATTTTGGTTCTCAGGGTTTGTTATAGTTTTTTATTTTTATGGGCTTTGGTGAGGGAGGTAGGTGGTAATTTGTATTTAATATTTTTAGTTGGGTGATGAGGA|ACTGAGGCCATGATTAAGAGGGATGGCTGGGGGCATTCGTATTGTGCCACTAGAGGTGAAATTCTTGGACTGGTGCAGTTCGGACCAGAGCTAAAGCATTTGCCAAGAATGTTTTCATTAACCAAGAACGAAAGTCGGAGTTTCGAAGACGATCAGATACCGTCGTTG	1	0.843835262614011	0.800133926999915	0.844771979185218	N	N	2.86552150100621	3.56807857436608	2.86552150100621	splitr	1	0	0	0	N	0.00909090909090904	N	N	3	0	ENSG00000230021	ENSG00000225840	-	-	1	Y	659930	10036711	intron	downstream	RP5-857K21.4	RN18S1	536816	10036113	-	-	0	568976	10035749	-	-	Y	0.828962371721779	-	N	SKBR3_13_2_1	6	1	6	6	2	1	N	N	0	1	2	0.44700307240143	0.546337088490636	0.546337088490636	0.44700307240143	2	0	-	0.60524179975777
125069	CCTACATGGAGAAACTCCGCCTCTAGTAAAAATACAAAATTAGCCGGGCATGGTGGTGCACGCCTCTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAAGTGGAGGTTGCAGTGAGCCAAGAGTACACCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTC|TTAAAAAAAAAAAAAAAAGAAAGAAAGAAAAGAAAAGGAAACAAAA	5	1	0.653411158696988	0.940318140136605	N	Y	3.48015048302568	1.69663133961901	1.69663133961901	splitr	232	0.543478260869565	0.369565217391304	0	N	0.456521739130435	N	N	6037	0	ENSG00000197879	ENSG00000219814	+	+	17	6	1395995	171055065	utr3p	upstream	MYO1C	XX-C2158C6.2	1367480	171054606	-	+	0.369565217391304	1368127	89706574	-	+	Y	-	-	N	SKBR3_13_2_1	225	1	134.5	44	2	1	N	N	1	1	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	2	-	-	0.60524179975777
137296	TTTCTTGTCGGCACCAGGTGGCACAGCACTCCGTCTGTAGGTATCTCTGTCAGCTTCC|TGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTATTCGAGCCGAACTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAATACCCATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGG	1	0.106905797436368	0.261533274614987	0.233421673643755	N	N	3.60888739872753	3.67170625192361	3.60888739872753	splitr	1	0.0172413793103445	0	0	N	0.103448275862069	N	N	8231	3	ENSG00000124614	ENSG00000230021	-	-	6	1	34393902	659930	coding	intron	RPS10	RP5-857K21.4	34385231	536816	-	-	0.0172413793103445	34389547	566452	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	28	0	25	22	2	1	N	N	0	0	2	0.827783467410055	0.819505632735954	0.827783467410055	0.819505632735954	3	-	0	0.60524179975777
95067	GTTTGGATGAGAATAGCTGTTACTATGAGGGCTATGTGGCTAATTGAAGAGCATGCAATGAGTGATTCTAAGTCTGTTTGTCGTAGGCAGATGGAGCTTGTTATGATTATGCCTCATAGAGATAGTATGAGGAAGGGATAAGCTATGTGTTTTGTCAGGGGGTTGAGAATGAGG|ATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCACACGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAGACAAGCGGATTCTCATGGAACACATCCACAAGCTGAAGGCAGACAAG	4	1	0.0998268606200242	0.168623764881348	N	N	3.27870928670295	3.80297331548166	3.27870928670295	splitr	10	0	0	0	Y	0	N	N	0	0	ENSG00000241023	ENSG00000218227	+	-	5	5	99384688	177483195	upstream	intron	AC113407.7	RP11-889L3.1	99384620	177482605	-	+	0	99385326	177482905	+	-	N	-	1	N	SKBR3_13_2_1	27	0	17.4	9	5	1	N	N	0	0	5	0.836061302084155	1.5231215800345	1.5231215800345	0.836061302084155	3	-	0	0.60524179975777
113452	GGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTTAAAC|AAAAAAAAAAAAAGGCATACATGTTAGAAAGGAAGAAATA	5	1	0.066220562647098	0.109430139143751	N	N	3.23999710710482	2.7962431093656	2.7962431093656	splitr	32	0.275	0.35	0	N	0.5	N	N	14698	0	ENSG00000187514	ENSG00000229435	+	-	2	7	232578251	159026067	utr3p	upstream	PTMA	PIP5K1P2	232571605	159024125	+	+	0.275	232577585	42393064	+	-	Y	-	-	N	SKBR3_13_2_1	384	1	144	18	3	1	N	N	0.381443298969072	1	3	0.802949963387753	0.422169568379128	0.802949963387753	0.422169568379128	1	-	-	0.60524179975777
111009	CTTTCAGAAACAGATTTCAGTCCTGCCCGCCCCCCCCCCCCCCCCCGCCTCC|TCCCCTCCTCCCCCCCCTCCCCTGCAGCCCCACGGAGTCTACGCCGGGAGGAGTAGGAGGGCCGCTGCGGTAAGCTTTGAAGCCTAGGGTATGGGCCCAGGTGGATAGGCCACAGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGT	1	1	0.526775457519482	0.600084425908804	N	N	2.48070100856473	2.74731396073257	2.48070100856473	splitr	5	0	0	0	N	0	N	N	0	0	ENSG00000178934	ENSG00000252318	+	+	19	2	39282391	133038738	upstream	upstream	LGALS7B	AC097532.1	39279842	133038647	+	-	0.0961538461538465	39278754	133038835	+	+	Y	-	-	N	SKBR3_13_2_1	8	1	5	2	2	1	N	N	0.6	1	2	0.413891733705027	0.45528090707553	0.45528090707553	0.413891733705027	1	-	-	0.60524179975777
74620	GCAGTCCTCGGTAGAAGTTGTGAGTTAAGCTCATTTGGGGTTCCATTTGTAAGACCATCTGTAGCTTGATGGCCTTGATC|TGCTCAGCAATAGGCGATGGTCTCACTGCTCGGCGATTGTCTCACCACTTGGCGATAGGCGAAAGTCCCATCTGGGTTGCCAAAACGTGTCTGGAATTGGCGGGTTCTTGGTCTCACTGACTTCAGGAATGAAGCCGCGGACCCTCGTGGTGAGTGTTACAGCTCTTAAGGTGGCGCACTGGAGTTT	11	1	0.00723197567897237	0.00445485904265033	N	Y	3.69784855983781	3.73080759109069	3.69784855983781	splitr	77	0.7375	0	0.5	N	0.8875	N	N	233	0	ENSG00000120915	ENSG00000233084	+	+	8	1	27403081	249231242	intron	upstream	EPHX2	AL672183.2	27348296	249230780	+	+	0	27350634	154644560	+	+	Y	-	-	N	SKBR3_13_2_1	26	1	7.5	1	2	1	N	N	1	0.573863636363636	4	0.45528090707553	1.30789787850789	1.30789787850789	0.45528090707553	4	-	-	0.60524179975777
103928	TCCCGGAGTAGTAAGTTACAATATGGGAGATTATTCCGAAGCCTGGTAGGATGAGAATATAAACTTCAGGGTGACCGAAAAATCAGAATAGGTGTTGGTATAGAATGGGGTCTCCTCCTCCGGCTGGGTCGAAGAAGGTGGTGTTGAGGT|TGACTCTAGTCTGGCACGGTGAAGAGACGTGAGAGGTGTAGAATAAGTGGGAGGCCCCCGGCGCCCCACTGTCCCCGGGA	10	1	0.891099579895066	0.5	N	N	3.37824872787089	3.47505968208974	3.37824872787089	splitr	11	0.0125	0	0.5	N	0.075	N	N	0	0	ENSG00000237973	ENSG00000220804	-	-	1	2	567996	243102304	intron	upstream	RP5-857K21.6	AC093642.5	566454	243030784	+	+	0.0125	567094	78928762	-	-	Y	1	-	N	SKBR3_13_2_1	9	1	6.75	6	4	1	N	N	0	1	4	0.711893781972647	0.571170592512938	0.711893781972647	0.571170592512938	1	0	-	0.60524179975777
19122	CCTGAACTTTGGGAGGCCAAGGTGGGCAGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGT|CTCTACTAAAAATACAAAAATTAGCCCGGCGTGGTGGCGCACACCTGTAGTCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTAAGCCAAGATCGCACCACTGCACTCCAGCCTGGGTGACAAGGTGAGAC	1	1	0.842938967773855	0.869602123524748	N	Y	3.62617734898681	3.42151315217503	3.42151315217503	splitr	241	0.901234567901235	0.753086419753086	1	N	0.802469135802469	N	N	91	1	ENSG00000158691	ENSG00000148482	-	-	6	10	28367511	18332221	utr3p	intron	ZSCAN12	SLC39A12	28346732	18240768	-	+	0.814814814814815	28347207	18301627	+	-	Y	-	1.04502476361999	N	SKBR3_13_2_1	1224	1	906	588	2	1	N	N	1	1	2	0.430447403053228	0.653948939253943	0.653948939253943	0.430447403053228	2	-	0	0.60524179975777
78930	GACATTAACAGACAAGACACTTTTCAGAAAGACAGGCAACGTGTTGGACCTTCCGGAGCTTCTCAGAAGACAGAGGGTTTTCTTTTG|AGGATTTAAACCTCAGACACAGGGAGCTGACCTATTCACCTTAGAATCCTCTGGGGCACCCATTACAGTGTCTGTACCAAGGAGGCAACAAAGAACGGCAGAACAGACTGGAGCAGAAGGACAACCCAGCAGAGC	2	1	0.935695919090345	0.871265487878886	N	Y	3.36295036923788	3.46551447180198	3.36295036923788	splitr	222	0.977011494252873	0	0	Y	0.977011494252873	N	N	150	0	ENSG00000223482	ENSG00000240660	+	+	10	10	89102369	52420232	intron	downstream	RP11-322M19.1	RP11-564C4.7	88963610	52418289	-	+	0	89048201	52426860	-	+	N	-	-	N	SKBR3_13_2_1	2	0.0568181818181818	2	2	5	1	N	N	0.0568181818181818	0	5	0.728449451320848	0.943673152847462	0.943673152847462	0.728449451320848	3	-	-	0.60524179975777
112934	GTGACGTCCTGCTGCAACTCCCCGAGCACTGCCTGTCTTCCCGCTCTCCAGCCCTCGAGGCTCCGGCATAGGCCTGAGAAAGCCGTGCCGGAGCTGCCCCTGTGCCTGCTACTAAATGAATTGCGGTGGGTGAGGTGGCAGCTGGGGACCCCTCTGTCCTGTGTCCCCTGCCATGTCCCTGTCTGACCCAGGCCTGGGGTACCACCCCACGTGCTGGACCCTACGCTGGCCACCCCTGTGCTCCCTCCCTGCCCTCTTGCTCTTTCTGCCTGGAACGGGCCCATAACCCCCCAGCCTTGCGCAGTCTCGGCTCCCCCCGAGAAGATGTCACCTTTGCTAACTCTCCTGCC|CCCACCGCTGACCCTGCCACCGTCCTGCCCAGCGGCCACTGACAGGTTTTCTTTCCCTTCTGGCAGTGTCCAGAGCAGGTGGTCGGTGGCATCTACGGGGTTTTGAACAGGAAGCGGGGCCACGTGTTCGAGGAGTCCCAGGTGGCCGGCACCCCCATGTTTGTGGTCAAGGCCTATCTGCCCGTCAACGAGTCCTTTGGTG	2	3.47520735386097e-12	0.196734923242299	0.258789252325421	N	N	3.42936294528359	3.10654011282762	3.10654011282762	splitr	30	0.0594059405940595	0.0594059405940595	0	N	0.0594059405940595	N	N	83603	36789	ENSG00000130600	ENSG00000167658	+	+	11	19	2022700	3985461	intron	intron	H19	EEF2	2016406	3972316	-	-	0.0594059405940595	2018513	3977411	+	+	Y	0.837795673423634	1.11650852792554	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	3270	828	0.60524179975777
138504	GAGGGTGTCTGCTTCTCCCCGCCAGCCCTCGATCCCCTAAACCTCCTTCTTTCAGAAGGCTGGGGAAGCGAGGCCTGGGGAGGGAAGGGACTCACCTGCCCGGCAGATGGGGTCCTCACCTGCCCGCTGCTGCCAGCTACACCTCCGTTGCCCAGGCCCTGGGATCAAACCCTGCCCACCAGCTCCCCTCGTCCAACCAGCTGCCACGTCCTGTAACCAAAAGTGACCGGGATGAATGCCTGGCTCCCCCTTCTTTCC|CTCCCCACCTGTTCCTCCCCCTCTTCCCTTGCTGCTGACTTGTAACTGCAATAGTGACTCTGTGCTTGTCTGTTTAGTTCTGTATATAAATGGAATGTTGTGGAGATGACCCCTCCCTGTGCTGGCTGGTTCCTCT	1	0.000391703559497318	0.311204357582937	0.306030290211129	N	N	3.32895826821511	2.78060872349216	2.78060872349216	splitr	0	0	0	0	N	0.0882352941176469	N	N	83603	373	ENSG00000130600	ENSG00000183323	-	+	11	5	2022700	68628636	intron	intron	H19	CCDC125	2016406	68576002	-	-	0	2018792	68608891	+	+	Y	-	0.684088712693386	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.827783467410055	0.687060277950346	0.827783467410055	0.687060277950346	1	-	11	0.60524179975777
28158	TGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTT|TCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATT	57	0.00756815624978218	0.337163277834545	0.477282398978688	N	Y	3.55297855482595	3.51001030496889	3.51001030496889	splitr	97	0.904761904761905	0	0.5	N	1	N	N	1	1	ENSG00000256642	ENSG00000163046	+	+	16	2	33962503	133015542	upstream	intron	NCRNA00273	ANKRD30BL	33961052	132905164	-	-	0.904761904761905	33963394	133012882	+	+	Y	-	0.81549815498155	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	1	2	0.504947915120133	0.546337088490636	0.546337088490636	0.504947915120133	2	-	0	0.60524179975777
119868	ATGGGAGGCAGGGGTGGGAATCTTCTTGTGATTGTGGGTGGTGGCTGGAGGAGTGGAGTGGTGGGAGGCGGCTCAGTCGCGGGCACTCCTGCGACTGGCGGATGCGGTCCGGATGGAATAAGCCTTCAGGAGCCCAGGACCCGCACTGCTGGAGAAGCTCAGGGCATTGCTGCCCATGGTTCCCCCGAGGGTCAGCCCAATGCCACCGCCACTGCTACTGCCACCAGTGGAATTCATCACAGAGATATTCACGGCTCCCACTCCATCTCCAGCC|AACCCGCCCCCCCCCCCCCCCCCCGCCTCTACTAAAAATACAGAAATTAGCCGGACG	1	0.0405254697873107	0.375556752806067	0.399915574091196	N	N	3.3697272397832	2.29930389273442	2.29930389273442	splitr	4	0.0701754385964912	0.0701754385964912	0	N	0.175438596491228	N	N	34840	667	ENSG00000135480	ENSG00000116191	-	+	12	1	52662180	179065553	coding	intron	KRT7	RALGPS2	52626954	178694300	+	+	0.0701754385964912	52641964	179052740	-	+	Y	-	9.98558534285329	N	SKBR3_13_2_1	3	1	1.5	1	1	1	N	N	0	1	4	0.968506656869764	0.430447403053228	0.968506656869764	0.430447403053228	1	-	0	0.60524179975777
99228	TATTTATACAGAGGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG|TGTGTGTGTGTGTGTGTTGGGGGAAGCGTCCCTGAAATAGTAAATATTATTGAGCTCTTTTTGCCCTTTTCCTGTCCGTTTTTTTAATTTCCTTTTTTGAGGTGGGAAAACTGAAACCCACCTTGATTCGTCCCCTCTCCCCCCTCCCCACCTTCCCTCGCCCTAATCCCCCAACGAGGAAGGAAGGAGCAGTTGGTTCAATCTCTGGTAATCTATGCCAGCAATTATGACAATGTTAGCAG	19	1	0.898220053950967	0.955255096830576	N	N	1.76526370042988	2.95488388970062	1.76526370042988	splitr	38	0.306122448979592	0.306122448979592	0	N	0.653061224489796	N	N	0	3680	ENSG00000139767	ENSG00000082898	+	-	12	2	119600856	61765761	utr3p	utr5p	SRRM4	XPO1	119419300	61704984	+	-	0	119596804	61764904	+	+	Y	-	-	N	SKBR3_13_2_1	52	0.82142857142857	13	2	17	1	N	N	0.82142857142857	0	17	0.463558741749631	1.59762209210141	1.59762209210141	0.463558741749631	1	-	-	0.60524179975777
111119	TTGCTGATTTCCCTTACCTACATTGTTCTAACATGCCAGAGGCTGTTTACCTTGGAGACCTGCTGTGGATATGGTTACAGCCTGGTGTGAGATTTACACCCTCTCCCCC|GGATTTTCAAGGGCCAGCGAGAGCTCACCGGATGCCGCCAGAAC	151	0.0622086465401379	0.585326243508765	0.95572148403334	N	N	3.48639814491089	3.49847350305486	3.48639814491089	splitr	51	0	0	0.769230769230769	N	0.727272727272727	N	N	0	0	ENSG00000251948	ENSG00000239935	+	+	19	5	24184165	71146942	downstream	intron	AC092279.1	AC116340.1	24184075	71146740	-	+	0.590909090909091	24183757	71146921	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.07692307692308	1	1	1	N	N	1	0.73134328358209	13	0.711893781972647	0.554614923164737	0.711893781972647	0.554614923164737	2	-	0	0.60524179975777
31965	ATCTGATAAATGCACGCATCCCCCCCGCGAAGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGCTACTGGCAGGATCAACCAGGTAGGTAGGTAGAGCGCGGCGAGGCCCCGACGCGGCCGGACGGCCGGCCGGGGGGCCTCGCGAGGACGGGCCCGGCGCCCCGCAAGCGAGGAGGACGACGGACGGACGGACGGACGGGCCGCGG|GGCGGGGATTCGGCGCTGGGCTCTTCCCTGTTCACTCGCCATTACTGAGGGAATCCTGGTTAGTTTCTTTTCCTCCGCTGACAAATATGCTTAAATTCAGCGGGTCGCCACGTCTGA	1	1.09094070667764e-07	0.526775457519482	0.600084425908804	N	N	2.54606177679822	3.25848796100334	2.54606177679822	splitr	11	0.0427350427350427	0	0	N	0	N	N	0	0	ENSG00000212932	ENSG00000141161	-	-	21	17	48111157	33516364	upstream	intron	RPL23AP4	UNC45B	48110676	33474836	+	+	0.0427350427350427	9826884	33478147	-	-	Y	-	1	N	SKBR3_13_2_1	2	1	1.5	1	1	2	N	N	1	1	2	0.786394294039552	0.786394294039552	0.786394294039552	0.786394294039552	1	-	0	0.60524179975777
141520	GACCTTGGCTGGTGTGAGGACT|TCAAGAACAAGTATGAGGATGAGATCAATAAGCGTACAGAAACGGAGAATGAATTTGTCCTCATCAAGAAGGACATGGATGAAGCTTACATGAACAAGGCAGAGCTGGAGTCTCGCCTGGAAGGGCTGACT	1	0.047969532846077	0.612610548302747	0.693969709788871	N	Y	3.14161920818398	3.45504124488137	3.14161920818398	splitr	0	0.681818181818182	0.363636363636364	0	N	0.409090909090909	N	N	944	8	ENSG00000163463	ENSG00000013297	-	-	1	3	155159747	170578169	coding	intron	KRTCAP2	CLDN11	155141884	170136653	-	+	0.681818181818182	155141964	170213744	+	-	Y	-	0.805057981572577	N	SKBR3_13_2_1	22	0	16.5	11	2	1	N	N	0	0	2	0.579448427187038	0.827783467410055	0.827783467410055	0.579448427187038	2	-	0	0.60524179975777
76318	GAGCCTCCAGCCCATTGTCCAACAACCACCCACCAACACCAAAGAGGTT|CCCAAGACAACCCGGAAGGGAAAAGGGACCCATCAAGGAAGTTCCAGGAACAAAAGGCTCTCCCTAAAAGACCGCCGCTTCAAAAAAACCTGAGGAATGGAGTGGGCCAACACTATCCAGCCACTCTGACCAGCCGAACGAGGAACTCAATCAAAATGAGCCATAGCGGGACCACAAGGGCAAGGAGACCACCACCTTCTCCAGTCTCTCT	5	1	0.153083803202663	0.143296801154224	N	Y	3.10910076590736	2.81147110998172	2.81147110998172	splitr	260	1	1	1	N	1	N	Y	4	131	ENSG00000242599	ENSG00000184324	+	-	X	X	151903136	151928738	intron	intron	CSAG4	CSAG2	151895976	151922445	-	+	1	151896560	151928359	-	-	N	-	-	Y	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.496670080446033	0.430447403053228	0.496670080446033	0.430447403053228	4	-	-	0.60524179975777
129618	CATGTCTCTTCACCATGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTG|GGAAGGCAGTCGAGGCTTCAGGGGACAGCGGGACGGAAACAGAAGATTCAGAGGACAGCGGGAAGGCAGTAGAGGCCCGAGAGGACAGCGATCAGGAGGTGGCAACAAAAGTAACAGATCC	3	1	0.93506114078144	0.87155630489804	N	N	3.51849194026323	3.18933755043872	3.18933755043872	splitr	13	0.0683760683760682	0.0683760683760682	0.25	N	0.0854700854700856	N	N	0	5485	ENSG00000137571	ENSG00000165732	+	-	8	10	70747299	70744829	intron	coding	SLCO5A1	DDX21	70584568	70715884	-	+	0.0683760683760682	70602443	70742400	+	-	Y	1	1.70920914893346	N	SKBR3_13_2_1	5	1	4.5	3	4	1	N	N	1	0	4	0.90228397947696	0.894006144802859	0.90228397947696	0.894006144802859	2	0	105.25	0.60524179975777
112733	GGGCTCCGGCGGCCGCGGCGTATCCGTGTCCTCCGCCCGCTTTGTGTCCTCGTCCTCCTCGGGGGCCTACGGCGGCGGCTACGGCGGCGTCCTGACCGCGTCCGACGGGCTGCTGGCGGGCAACGAGAAGCTAACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGCGGCCAACGGCGAGCTAGAGATTCTTGGTGCCACCATTGAGAACTCCAGGATTGTCCTGCAGATCGACAA|CGCCCCCCCCCCCCCCCCCCGCCTCTACTAAAAATACAGAAATTAGCCGGACG	1	1	0.311204357582937	0.306030290211129	N	N	3.72146071989581	2.6294258562514	2.6294258562514	splitr	5	0.0754716981132073	0.0754716981132073	0	N	0.113207547169812	N	N	58670	667	ENSG00000171345	ENSG00000116191	+	+	17	1	39684560	179065553	coding	intron	KRT19	RALGPS2	39679869	178694300	-	+	0	39681476	179052736	-	+	Y	-	9.98558534285329	N	SKBR3_13_2_1	12	1	1.55555555555556	1	2	1	N	N	0	1	27	1.5148437453604	0.44700307240143	1.5148437453604	0.44700307240143	1	-	0	0.60524179975777
54524	GAGCCCATTTGCCTTGACTCGCGGTAGGATGTTCAGACAGGAGCAGGTCAGGCGGATGACTGGGAGACTGGACG|ACAAAAGCTGTCTGCTGGCATCTGCTCGCCTGCCTGCCATGTGCAGCGGCCCCTTTGTGCCCGCGCACCCGGCCCGGCCCGGCCCTGCCTGCGCG	1	0.266462410279917	0.311204357582937	0.306030290211129	Y	Y	3.24780704742004	3.27609943326004	3.24780704742004	splitr	169	0	0	0	Y	0	N	N	0	4	ENSG00000213761	ENSG00000237857	+	-	9	9	98175799	98189078	downstream	intron	MT1P1	RP11-435O5.2	98175401	98177781	-	-	0	98173957	98189004	+	-	N	-	1.59970014992504	N	SKBR3_13_2_1	1	0.37	1	1	0	1	N	Y	0	0.37	2	0.438725237727329	0.827783467410055	0.827783467410055	0.438725237727329	2	-	0	0.60524179975777
73431	AGTATAAGAGATCAGGTTCGCCCTTTAGTGTTGTGTATGGCTATCATTTGTTTTGAGGTTAGTTGGATTAGTCATTGTTGGGTGGTAATTAGTCGGTTGTTGATGAGGTATTTGGAGGTGGGGATCAATAGAGGGGGAAATAGAATGATCAGTACTGCGGCGGGCAGACCTAGGATTGTGGGGGCAATGAATGAAGCG|CGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTA	2	1	0.258666488296237	0.373143407944048	N	N	3.49744043328497	3.45872825368684	3.45872825368684	splitr	9	0	0	0	N	0	N	N	42	0	ENSG00000185304	ENSG00000198626	-	-	2	1	88285309	238129359	intron	intron	RGPD2	RYR2	88055474	237205505	-	+	0	88124639	237766392	-	-	Y	1.62714648350007	1	N	SKBR3_13_2_1	9	1	9	9	3	1	N	N	0	1	3	1.17545252372228	0.678782443276245	1.17545252372228	0.678782443276245	1	0	0	0.60524179975777
106977	CCCTCTTTGCCCGAGTACTTGTGGAAGGTGGACACCATCACATCCAGGGCCTTCTCCAGAGGGCACGCCATGACAGCAGTCAGGATCAAACCAAGAAAGAAGAAGCGCTGAGGAGAGAGGGTTGTAGA|AGAGAAGAAGAAGGAGGTTCCTGCTGTGCCAGAAACCCTTAAGAAAAAGCGAAGGAATTTCGCAGAGCTGAAGATGAAGCGCCTGAGAAAGAAGTTTGCCCAAAAGATGCTTCGAAAGGCAAGGAGGAAGCTTATCTATGAAAAAGCAAAGCACTATCACAAGGAATATAGGCAGATGTACAGGACTGAAATTCGAATGG	2	1	0.231619174474302	0.323771392476512	N	N	3.16463888744835	3.33676820853032	3.16463888744835	splitr	12	0.0859375	0.0703125	0	N	0.1171875	N	N	4298	107	ENSG00000196154	ENSG00000182578	-	-	1	5	153522612	149492935	utr5p	intron	S100A4	CSF1R	153516089	149432854	-	-	0.0859375	153518270	149473879	+	-	Y	-	0.525371610097155	N	SKBR3_13_2_1	20	0	11.75	5	4	1	N	N	0	0	4	1.04300716893667	0.90228397947696	1.04300716893667	0.90228397947696	1	-	2.5	0.60524179975777
139662	CTCTGTTGGTGTGGAACACTAGGGGATGAACCTCAACACCCAAGGTGGCTACATACTTCTTCTCAAATTCACCAGTCAAATGACGTTTCACGAAGGTCGTTTTTCCAGTACCACCATCACCAACCAATACAAGCTTCCAGAAGCGTCTCCGCGCCCGTCCGACTGAGGCTGGAAAGATGGCGGAAGCGCAATTCAAACGCCGGAGACGCAGCCGACGCCGGC|TTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCATCATCACCCTCCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACACTACTCCCTATATCTAACAACGTAAAAATAAAA	1	0.000179519115639765	0.254583648908217	0.223418152789081	N	N	3.27609943326004	3.16726232126039	3.16726232126039	splitr	5	0	0	0	N	0	N	N	4558	0	ENSG00000132341	ENSG00000225630	-	-	12	1	131362223	566063	coding	intron	RAN	RP5-857K21.8	131356424	565020	+	+	0	131356583	565797	-	-	Y	-	1	N	SKBR3_13_2_1	6	0	5.33333333333333	4	3	1	N	N	0	0	3	0.802949963387753	1.05128500361077	1.05128500361077	0.802949963387753	1	-	0	0.60524179975777
119788	GTTATCAGTGAGCTGAATGGAAAAAACATTGAAGACGTCATTGCCCAGGGTATTGGCAAGCTTGCCAGTGTACCTGCTGGTGGGGCTGTAGCCGTCTCTGCTGCCCCAGGCTCTGCAGCCCCTGCTGCTGGTTCTGCCCCTGCTGCAGCAGAGGAGAAGAAA|CTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGG	33	0.960189443411522	0.0330414167727154	0.104274650231396	N	N	3.21336028565066	3.74487454086093	3.21336028565066	splitr	17	0	0	0	N	0.0138888888888887	N	N	10215	0	ENSG00000177600	ENSG00000141161	+	+	11	17	812880	33516364	coding	intron	RPLP2	UNC45B	809647	33474836	+	+	0	812773	33478209	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	2	-	0	0.60524179975777
107589	ATGCCTGAGAACGCTTCCATTTGCCCATGTCTGGAACTGTGTGGATCTCCTTTTTTGGAATGATGAAGTTCTGAGTGGCTGGAGGGGCCTCCTCTGAAGAATC|CGAAGGTGCTGCCATTGTCTGGCTCTCTGTGATTCTCTCTTCTTCCCTTCTGTTTCTCAACCTGGAAAGGGTGGGAGAAAAGGACGTGGGGACCTCCAAGAGGGACAGTCACCACTCTGCTGGCTGGCTCCTCTTCCAGGGTGAGAAAGGAGGGGCCTGTGCAACCCAACAGGTGGGCGGTCCCCCTCACCTCTGCCACCCCAAAGGTGCCGTTCATCCTGACTTGGTTCCCCTGAGCCTTGCTAA	1	0.456026046492622	0.375556752806067	0.399915574091196	Y	Y	3.36567885618696	3.42567593647813	3.36567885618696	splitr	100	0.970873786407767	0	0	Y	0	N	N	3947	1066	ENSG00000119383	ENSG00000095321	-	+	9	9	131911225	131873468	coding	intron	PPP2R4	CRAT	131873229	131857073	+	-	0	131873910	131870826	-	+	N	-	12.1966578524927	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	2	0.711893781972647	0.827783467410055	0.827783467410055	0.711893781972647	1	-	9	0.60524179975777
139526	CACTCACATAATTAGTACTCCTTTCTCTCTCTCTCTCTTTTTTTTT|TTTTTTTTTGAGACAGAGTCTCGCTCTCTCACCCAGGCTGGAATGCAGTGGCCCAATCTCGGCTCACTGCAACCTCCACGTCCCGGGTTCAAGCAATTCTCCTGTCTCAGCCTCCCAAGTCGCTGGGACCACAGGCACATGCCATCAGGACTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGATCA	1	1	0.899266171301115	0.897571427984624	N	Y	2.68999199799603	3.2044774227722	2.68999199799603	splitr	222	1.11022302462516e-16	0	0.5	N	0.478260869565217	N	N	0	0	ENSG00000143355	ENSG00000230304	-	-	1	3	197904608	197953181	utr3p	downstream	LHX9	CICP6	197881618	197950368	+	-	0	197902880	141878699	-	-	Y	-	-	N	SKBR3_13_2_1	325	1	183.5	42	2	1	N	N	0.581818181818182	1	2	0.45528090707553	0.579448427187038	0.579448427187038	0.45528090707553	2	-	-	0.60524179975777
131273	GGTGGTGGCAATGCTGGTGGTTCTCTCTGTGGCTTCTTCGTAGGGTTCCTCAGCCTCTTCCTCTACCTCATCACCATCCTC|ATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTG	2	0.0990066784812754	0.332952788415832	0.5	N	N	3.10653076525781	3.30062602958175	3.10653076525781	splitr	14	0.105263157894737	0.105263157894737	0	N	0.184210526315789	N	N	8411	3	ENSG00000142192	ENSG00000230021	-	-	21	1	27543446	659930	coding	intron	APP	RP5-857K21.4	27252861	536816	-	-	0.105263157894737	27394276	568362	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0.605263157894737	2	2	3	2	N	N	0.605263157894737	0	3	0.943673152847462	0.844339136758256	0.943673152847462	0.844339136758256	2	-	0	0.60524179975777
65379	CAGAAATTCCAGAAGGCTATGTCCCAGAACACTGGGAATATTATAAGCATCCCATATCAAGATGGATTGCCCGTAATTTCTATGATAGTCCTGAAAAGATATATGAAAGAACAATGGCCGTCCTTCAGATTGAAGCTGAAAAGGCTGAATTAC|GGAGCCCGGCATTATAAAAAGACATGGTGTAAGTTGAACAGACTTCAGACTAAATCCAATCACAAAGAAACATTGAACAAACAAACAAAAAATAAAC	3	1	0.856088358400918	0.727888649497238	N	Y	3.77104735399867	3.54449691953162	3.54449691953162	splitr	250	0	0.0309278350515464	0	Y	0.020618556701031	N	N	1383	0	ENSG00000136521	ENSG00000230304	+	-	3	3	179345435	197953181	coding	downstream	NDUFB5	CICP6	179322478	197950368	+	-	0	179336308	179350449	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	3	1.03472933426257	0.571170592512938	1.03472933426257	0.571170592512938	1	-	-	0.60524179975777
140012	AGGAGGGGAGATTCAGTGTGGTGGGGGACTGAGTGTGGCAGGGACTCCCCAGCAGTGAGGGTCTCTCTCTTCCTCTTGTGCTCTTACTGGGGCTGGTGGTCCAGGGGTCTTACTCCTTGGAGGCCATGTGGGCCATGAGGTCCAC|CACCCTGTTGTGGCTCTATAAGCAGGTT	1	0.310689151653693	0.390564714822603	0.421349522516249	N	N	3.64656650855576	3.60601527962073	3.60601527962073	splitr	0	0.321428571428571	0.321428571428571	0	N	0.428571428571429	N	N	0	492	ENSG00000228232	ENSG00000256322	+	+	X	7	39647390	132720699	intron	intron	GAPDHP1	AC008038.2	39646386	132719842	-	-	0.321428571428571	39646421	132720183	+	+	Y	1	0.408721074551121	N	SKBR3_13_2_1	24	0	18	12	2	1	N	N	0	0	2	0.422169568379128	0.75328295534315	0.75328295534315	0.422169568379128	1	0	0.5	0.60524179975777
49960	CTAGGTTTATAGATAGTTGGGTGGTTGGTGTAAATGAGTGAGGCAGGAGTCCGAGGAGGTTAGTTGTGGCAATAAAAATGATTAAGGATACTAGTATAAGAGATCAGGTTCGTCCTTTAGTGTTGTGTATGGTTATCATTTGTTTTGAG|TTTAGTATTGATTGTTAGCGGTGTGGTCGGGTGTGTTATTATTCTGAATTTTGGGGGAGGTTATATGGGTTTAATAGTTTTTTTAATTTATTTAGGGGGAATGATGGTTGTCTTTGGATATACTACAGCGATGGCTATTGAGGAGTATCCTGAGGCATGGGGGTCAGGGGTTGAG	1	0.0628954389696596	0.447538936456759	0.5	N	N	3.16253289511522	3.05206556628006	3.05206556628006	splitr	14	0.00671140939597314	0.00671140939597314	0	N	0.00671140939597314	Y	N	38194	19641	ENSG00000198899	ENSG00000198695	-	-	MT	MT	9207	14673	coding	coding	MT-ATP6	MT-ND6	8527	14149	+	-	0.00671140939597314	8685	14587	-	+	N	-	-	N	SKBR3_13_2_1	6	0	6	6	2	2	N	N	0	0	2	0.438725237727329	0.422169568379128	0.438725237727329	0.422169568379128	3	-	-	0.60524179975777
141306	CGAGCTCGTCCCCCGGCCGGCGGTCCTGGGCGGTGGCGGCGAGGAGGGGAAGGAAGAAGGAA|GTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGATGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGACAGCTACGGGCAAGCGGGCAGCTGAAGATGAT	5	1	0.219383198865207	0.497156939920873	N	N	3.03593247697004	3.51104337473878	3.03593247697004	splitr	10	0.161290322580645	0.129032258064516	0	N	0.145161290322581	N	N	3773	0	ENSG00000124214	ENSG00000197744	+	-	20	5	47804904	118309817	utr5p	intron	STAU1	CTB-161M19.3	47729878	118309491	-	+	0.161290322580645	47804727	118309557	+	-	Y	3.1736444445764	1	N	SKBR3_13_2_1	7	0.677165354330709	6.5	6	2	1	N	N	0.603960396039604	0.677165354330709	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	51	0	0.60524179975777
140250	TCCTCCAGGATCTTAGGAAATTTCACTCCGCTTCTCCTGCTCAATGGTCTCTTTGGTCGGCAGGGTGTTCTTCTCCTGCGTCTCCGTTTTCTTCAGCTTGGCCTTATCGAAGCTGGCGATTTCCCCCATGTCTGGTTTGTCTGCCATTTTCTTAAAACAATCCGTGCAGTCTCGTTCCGAGCCCGAGAT|TCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGACTTGGCGGAATCAGCGGGGAAAGAAGACTCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACGTG	1	1	0.612610548302747	0.693969709788871	N	N	3.64553343878587	3.33424740824393	3.33424740824393	splitr	13	0.0583333333333333	0.0583333333333333	0.5	N	0.0750000000000001	N	N	6864	0	ENSG00000034510	ENSG00000226958	-	-	2	X	85133795	108297792	utr5p	intron	TMSB10	RN28S1	85132749	108297361	+	-	0.0583333333333333	85132816	108297524	-	-	Y	-	1	N	SKBR3_13_2_1	5	1	4	3	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	0	0.60524179975777
139114	TGGTACTTCCAGCCAACCTCGTGAGCCAGGCGCCCCAGATAGGCAAACTTTCTTGTAGGCTTCAGACGCACGACCTTGAGGGCAGCAGGAACCACCATCCGCTTTTTCTTGTCGTAGGGCGGTGGGATGCCGTCAAACACCTTGAGACGGTCCAGAGCG|AAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTTGTAATTCCGACCATAAACGATGCCAACTGGCGATGTGGCGGTGTTATT	312	0.96986908066308	0.0101083838372373	0.0220793230543493	N	N	3.64809409186561	3.36187744667464	3.36187744667464	splitr	8	1.11022302462516e-16	1.11022302462516e-16	0	N	0.116666666666667	N	N	0	1	ENSG00000236552	ENSG00000163046	-	+	10	2	98510675	133015542	intron	intron	RPL13AP5	ANKRD30BL	98510045	132905164	+	-	1.11022302462516e-16	98510335	133012787	-	+	Y	1	0.81549815498155	N	SKBR3_13_2_1	33	1	30	27	2	1	N	N	0	1	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	2	0	0	0.60524179975777
132492	GATGGGACACCTGGTGAGGATGGTGGCGAGCCTGGGGATGCCGTAGCTGCGGCCGAGCAGCCTGCCCAGTGTGGGCAGGGGCAGCCGTTCGTGCTGCCCGTGGGCGTGAGCTCCAGGAATGAGGACTACCCCCGAACCT|GCAGGATGGCAGGAATAGCACATTTCAAACCTACAAGAAAGAAGTGTGCCTCCCCCGTCATTCGATGCACCCTGGCCCCTGGGCCATCTGCTGTGAATGCCAGACCAGATTCGGGGGCCGCCTGCCTGTGTCCAGGGTGGAAGCAG	1	0.643828295372364	0.447538936456759	0.5	Y	Y	3.56129235625094	3.41000685548453	3.41000685548453	splitr	285	0.985611510791367	0.0071942446043165	0	Y	0.97841726618705	N	N	237	19	ENSG00000103264	ENSG00000131152	+	-	16	16	87417394	87351022	coding	coding	FBXO31	AC010531.1	87362944	87336423	-	-	0	87367502	87350708	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	2	0.471836576423731	0.778116459365451	0.778116459365451	0.471836576423731	1	-	-	0.60524179975777
141574	AAGTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATG|GATGATGAAGAGGAGGAAGGATTAGAAGATATTGATGAATAAGGGGATGAGGATGAAGGTGAAGAAGATGAAGATAATGATGAAGGGGAGGAAGGAGAGGAGGATGAAGGAGAAGATGACTAAATAGAACACTGATGGATTCCAA	2	1	0.258666488296237	0.373143407944048	N	N	2.48031154816181	2.77335363512112	2.48031154816181	splitr	54	0.144827586206897	0.131034482758621	0	N	0.262068965517241	N	N	14698	0	ENSG00000187514	ENSG00000240489	+	-	2	3	232578251	155705965	coding	intron	PTMA	RP11-111F10.2	232571605	155705093	+	+	0.144827586206897	232576693	155705843	+	-	Y	-	1	N	SKBR3_13_2_1	35	0.810457516339869	20.5	6	2	1	N	N	0.172727272727273	0.810457516339869	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	4	-	0	0.60524179975777
106485	CTACCTACCTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAA|AGTCTTGATGATCTCCTCCTTCTTGGCCTGGAGGTGCTCTTCACGGTGCTTGCGTGCTTCCTTGGTCTTAGACCTGCGGGTCTCAGCCTGGTCAGCCAGGAGCTTCTTGCAGGCCTTGTCTGCCTTCAGGTTGTGGATGTGTTCCATGAGGATCCGCTTGTTTTTGAACACATTCCCCTTCACCTTCAGGTACAGGCTGT	3	0.00790693597395111	0.374340704809805	0.655707258359451	N	N	3.50421730383029	3.28183900123616	3.28183900123616	splitr	14	0.0440251572327042	0.0440251572327042	0	N	0.106918238993711	N	N	0	0	ENSG00000212932	ENSG00000236762	+	-	21	10	48111157	122893237	upstream	intron	RPL23AP4	RP11-159H3.1	48110676	122892604	+	-	0.0440251572327042	9827154	122892635	+	-	Y	-	1	N	SKBR3_13_2_1	9	1	8.5	8	2	1	N	N	1	0	2	0.422169568379128	0.827783467410055	0.827783467410055	0.422169568379128	3	-	0	0.60524179975777
21551	GGTGGTGTTGAGGTTACGGTCTGTTAGTAGTATAGTGATGCCAGCGGCTAGGACTGGGAGAGATAGGAGAAGTAAGACTGCTGTGATTAGGACGGATCAGACGAAAAGGGGCGTTTGGTATTGGGTTATGGCAGGGGGTTTTATATT|GCTAATTTTTGTATTTTTCCGTACGCCACATTTCCCGCGCCCCACCGCGGGGCGGGGATTCGGCGCTGGGCTCTTCCCTGTTCACTCGCCATTACTGAGGGAATCCTGGTTAGTTTCTTTTCCTCCGCTGACAAATATGCTTAAATTCAG	1	0.365664568446417	0.467532148991838	0.526369772984128	N	N	2.78210580157848	3.19343513439813	2.78210580157848	splitr	12	0.0204081632653061	0.0204081632653061	0	N	0.0272108843537415	N	N	0	0	ENSG00000237973	ENSG00000141161	-	-	1	17	567996	33516364	intron	intron	RP5-857K21.6	UNC45B	566454	33474836	+	+	0.0204081632653061	566961	33478097	-	-	Y	1	1	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.521503584468335	0.438725237727329	0.521503584468335	0.438725237727329	1	0	0	0.60524179975777
107393	ATGAAATGAGGTCTCACCATATTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCACGAGCACAGCATGCTACAGTCTCAAGCCTCCCGAGTAGCTAGGACTACAGAGAAAGGGGCTCACTGTGTCACCCAGGCTGGAATGCAGTGGCACAATCACAGCTCCCTGCAGCCTCAAACTCCTGGG|CTCAAGCGATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCTGCCACCACCCCCAGTTAATA	5	1	0.052612117538756	0.0759706397063817	N	Y	3.25360004855864	3.40232489624531	3.25360004855864	splitr	68	0.136986301369863	0.547945205479452	0.5	N	0.534246575342466	N	N	0	0	ENSG00000254248	ENSG00000152954	+	-	8	6	96100152	24156424	intron	utr3p	RP11-320N21.2	NRSN1	96083960	24126350	-	+	0	96090796	24146835	-	-	Y	-	-	N	SKBR3_13_2_1	140	1	71.5	3	2	1	N	N	1	1	2	0.45528090707553	0.438725237727329	0.45528090707553	0.438725237727329	2	-	-	0.60524179975777
115828	CCACATCAAGCCCGAATGATATTTCCTATTCGCCTACACAATTCTCCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTGCCCTATTACTATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATATCCAAACAACAAAGCAT|AATATTAAACACAAACTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATT	1	0.756932456417423	0.612610548302747	0.693969709788871	N	N	2.8973677569025	2.92611057068979	2.8973677569025	splitr	6	0.0540540540540542	0.0540540540540542	0	N	0.0540540540540542	Y	N	37049	3466	ENSG00000198727	ENSG00000228253	+	-	MT	MT	15887	8572	coding	coding	MT-CYB	J01415.25	14747	8366	+	+	0.0540540540540542	15690	8446	+	-	N	1.10137574330458	-	N	SKBR3_13_2_1	4	0	3	2	3	2	Y	N	0	0	3	1.13406335035178	0.877450475454658	1.13406335035178	0.877450475454658	2	2203.66666666667	-	0.60524179975777
134777	AGGCTTTGAATCTCTCAGAAAAAAGGAAAGACAGGAAAGCTCAGAAACAAAGAGACAGAAGGATGAAAAAGAAGAAGAGGGAGGTGGTGGGGACGGCGTCATCCCGCTGGAGGAGCTCAGCTCTGGGATGATGTGGTGGCTGGTGGTCAACCGTCCGCCGCAGGGGGTGGCCATGAAGATGGAGTCGCCG|CAGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCAGTTGAAGATGG	1	1	0.261533274614987	0.233421673643755	N	N	3.36720643949681	3.48846428445067	3.36720643949681	splitr	0	2.22044604925031e-16	2.22044604925031e-16	0	N	0.0476190476190477	N	N	83603	0	ENSG00000130600	ENSG00000251948	-	+	11	19	2022700	24184165	intron	intron	H19	AC092279.1	2016406	24184075	-	-	2.22044604925031e-16	2016941	24184151	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.66666666666667	1	2	1	N	N	0	1	3	0.943673152847462	0.562892757838837	0.943673152847462	0.562892757838837	2	-	0	0.60524179975777
139670	CCTCTAGGACTTGCTTTCTCCGCATAGCCCTTTTGCAGGCTTCAGAGTTCTTTCCATCCAGTAGCCCCGGGACTTCTCTCTGTTAGGTTTTGTTTCCATATGTATTACCTTCACTTGCTTCTTTTTTTTTTTTTTTTTGAGA|TGGAGTCTCGCTCTGTCACCCAGGCAGGAGAGTGCGGTGGTGCGATCTCAGCTCACTGCAACCTTTACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGAACCTGCCACCAGGCCTGGCTAATTTTTGTATTTTCAGTAGAGATGGGGTTTCGCCAAGTTGGCCAGGCTTGTCTCAAACTCCTGACC	1	1	0.899266171301115	0.897571427984624	N	Y	2.63661330195066	3.40016547074969	2.63661330195066	splitr	354	0.183098591549296	0.394366197183099	1	N	0.028169014084507	N	N	944	13173	ENSG00000163463	ENSG00000108344	+	+	1	17	155159747	38154213	intron	intron	KRTCAP2	PSMD3	155141884	38137050	-	+	0.183098591549296	155143891	38152369	-	+	Y	-	-	N	SKBR3_13_2_1	21	1	17.5	14	2	1	N	N	0.289156626506024	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	0	-	-	0.60524179975777
140884	GAGAATGGCTGCTCCGCTCCCTCCTGAAGCCAGGCCTCGGGTGTGACGGGGAGATAGAACCTGGGGGGCACAGAAA|GAGCTGCAGAGTCTGGCTGGGAAGCACGGGGATGACCTGTGGCGCACAAAGACTGAGATCTCTGAGATGAACTGGAACATCAGCCAGCTCCAGGCTGAGATTGAGGGCCTCAAAGGCCAGAGGGCTTCCCTGGAGGCCGCCATTGCAGATGC	1	0.917117481063222	0.899266171301115	0.897571427984624	N	N	3.34152813989903	3.44463079869307	3.34152813989903	splitr	2	0	0	0	N	0	N	N	7371	1367	ENSG00000141522	ENSG00000198363	-	-	17	8	79829282	62627199	utr3p	intron	ARHGDIA	ASPH	79825598	62413115	-	-	0	79826476	62491640	+	-	Y	-	1.15755270340056	N	SKBR3_13_2_1	10	0	6.5	3	2	1	N	N	0	0	2	0.794672128713653	0.827783467410055	0.827783467410055	0.794672128713653	3	-	22.5	0.60524179975777
106784	CTTTATTTCCGCTTTCATTTCGTTATGTACCCAGTAGTCATTCAGGAGCAAGTTGTTCAGTTTCCATGTAGTTGAGCGGTTTTGAGTGAGTTTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGTTCTGAGAGACAGTTTGTTATAATTTCTTTCTTTTACATTTGCTGAGGAGTGCTTT|CAAATTAGAACTCAGGACTAAGAAAATGACTAAAAACCACACAACTACATGGAAACTGAAC	1	1	0.163782765099475	0.102428735043176	N	Y	3.27660329436982	3.19765135186371	3.19765135186371	splitr	243	0.836065573770492	1.11022302462516e-16	0.5	N	0.0819672131147543	N	N	96	1767	ENSG00000148219	ENSG00000129084	+	+	9	11	120177348	14665181	utr3p	intron	ASTN2	PSMA1	119187504	14515329	-	-	0.0655737704918031	119374752	14619638	-	+	Y	-	20.551012046845	N	SKBR3_13_2_1	4	1	3	2	2	1	N	N	1	1	2	0.562892757838837	0.413891733705027	0.562892757838837	0.413891733705027	2	-	1	0.60524179975777
127397	CTGGGTGGAGCTGTCCCAGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCAGT|GTGAAACAGCAGTTGAACACGGGTCAGTCGGTCCTGAGAGATGGGCGAGCGCCGTTCCGAAGGGACAGGCAATGGCCTCCCTTGCCCTCAGCGGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGTGGCGGAGATGGGCGTAGTGGAGTTGATGGCATACGAAGACG	508	1	0.134939173768732	0.557233408874546	N	N	3.45297510534159	3.48912663185998	3.45297510534159	splitr	0	0	0	1	N	0.571428571428572	N	N	0	0	ENSG00000251948	ENSG00000241530	-	+	19	2	24184165	230045666	intron	intron	AC092279.1	AC006368.1	24184075	230045488	-	-	0	24184077	230045634	-	+	Y	1	1	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	0.942307692307692	2	0.571170592512938	0.430447403053228	0.571170592512938	0.430447403053228	0	0	0	0.60524179975777
78339	CACTCCTTAGTGGATTCTGACTTCCATGGCCACCGTCCTGCTGTCTATATCAACCAACACCTTTTCTGGGGTCTGATGAGCGAGTAATC|CGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAA	1	0.0400291925983081	0.390564714822603	0.421349522516249	N	N	3.77001428422878	3.79814505740747	3.77001428422878	splitr	4	0	0	0	N	0.378378378378378	N	N	0	0	ENSG00000252666	ENSG00000243185	-	+	19	4	36066721	70296753	upstream	intron	AD000090.1	AC108078.1	36066627	70296579	+	-	2.22044604925031e-16	36066499	70296728	-	+	Y	-	1	N	SKBR3_13_2_1	2	0.984848484848485	2	2	2	1	N	N	0.984848484848485	0.676470588235294	2	0.546337088490636	0.562892757838837	0.562892757838837	0.546337088490636	2	-	0	0.60524179975777
127469	GAGATCTGGGACTGCAGCTCTGTCAACTCCGTCTCATTGAGGGTCCTGAGGAAGTTGATCTCATCATTCAGGGCATCCACCTTGGCCTCCAGCTCCACCTTGCTCATGTAGGCAGCATCCACATCCTTCTTCAGCACCACAAACTCATTCTCAGCAGCTGTGCGGTGGTTAATTTCATCTTCGTACCTATTCTTGAAGTCCTCCAC|CAGCCCCTGCATGTTGCCAAGCTCCGCCTCCAGCTTCAGCTTCTCCTGGCCCAGAATCTCCAGC	2	1	0.467754455729131	0.564257146108723	N	N	3.60785432895764	3.2452463943403	3.2452463943403	splitr	65	0	0.40625	0	N	0.390625	N	N	34840	0	ENSG00000135480	ENSG00000224520	-	+	12	1	52662180	157044494	coding	intron	KRT7	RP11-110J1.3	52626954	157043049	+	+	0	52629131	157043558	-	+	Y	-	1	N	SKBR3_13_2_1	26	0	20.4	9	10	1	N	N	0	0	10	1.01817366491437	1.04300716893667	1.04300716893667	1.01817366491437	3	-	0	0.60524179975777
111283	CTCAGAGCTGGGCTCCTCCTCCCCCTCCCCCTCCGCCCCCCCCCCCCCCGCCT|CCGTCCCCTCCTCCCCCCCCTCCCCTGCAGCCCCACGGAGTCTACGCCGGGAGGAGTAGGAGGGCCGCTGCGGTAAGCTTTGAAGCCTAGGGTATGGGCCCAGGTGGATAGGCCACAGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAG	1	1	0.741226900104651	0.805084147116216	N	N	1.72959037087189	2.75381341573847	1.72959037087189	splitr	0	0	0	0	N	0	N	N	321	0	ENSG00000228594	ENSG00000252318	+	+	1	2	1535476	133038738	downstream	upstream	RP11-345P4.5	AC097532.1	1533392	133038647	-	-	1.11022302462516e-16	1532872	133038838	+	+	Y	-	-	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0.48	1	2	0.413891733705027	0.513225749794234	0.513225749794234	0.413891733705027	2	-	-	0.60524179975777
136840	AAGTGCTATGCTCGCCTTCACCCTCGTGCTGTCAACTGCCGCAAGAAGAAGTGTGGTCACACCAACAACCTGCGTCCCAAGAAGAAGGTC|TGGTTAGACCCCAATGAGACCAATGAAATCGCCAATGCCAACTCCCGTCAGCAGATCCGGAAGCTCATCAAAGATGGGCTGATCATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAG	2	0.532710337695524	0.075897432469696	0.0528632748897925	N	N	3.46145674063593	3.53718568265298	3.46145674063593	splitr	13	0.144444444444444	0.144444444444444	0	N	0.144444444444444	N	N	5684	129759	ENSG00000221983	ENSG00000108298	+	-	19	17	18688269	37360980	coding	coding	UBA52	RPL19	18682614	37356536	+	+	0.144444444444444	18685954	37357527	+	-	Y	-	-	N	SKBR3_13_2_1	4	0	3.66666666666667	3	3	1	Y	N	0	0	3	0.662226773928044	1.02645149958847	1.02645149958847	0.662226773928044	2	-	-	0.60524179975777
72734	GAAAAGAGGTTTAATTGACTCACAGTTCTGCAGGCTGTACAGGAAGCATGGCTGGGGAGGCCTCAGGAAACTGACAATCACGGCAGAAGGCGAAGGGGAAGCAGGCACGTCT|CTTCTTAATATTCCTTTGAAATTCTTTATGGTGCACAGGTAGCGTAGAAAATAACTGCTTCACACTGACTGTCATCCCTCTGGGGTGGGGGTAGGGGGTTTTCTGGATGATTTTCCCAT	1	1	0.311204357582937	0.306030290211129	N	Y	3.3463227663879	3.50000108636471	3.3463227663879	splitr	231	0.973214285714286	0	0	N	0.964285714285714	N	N	60	0	ENSG00000243566	ENSG00000078319	-	-	7	7	76648340	99939531	utr3p	intron	UPK3B	PMS2P1	76139745	99918615	+	-	0	76157081	99926459	-	-	N	-	1	Y	SKBR3_13_2_1	20	1	14	8	2	1	N	N	1	0	2	0.521503584468335	0.703615947298547	0.703615947298547	0.521503584468335	2	-	0	0.60524179975777
141017	CTGATAAATGCACGCATCCCCCCCGCGAAGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGC|TGGACGCCACTGTGGGGCTCTGAGGGTCCTGAATTCTTACTGGGTTGGTGAAGATTCCACATACAAATTTTTTGAGGTTATCCTCATTGATCCATTCCATAAAGCTATCAGAAGAAATCCTGACACCCAGTGGATCACCAAACCAGTCCACAAGCACAGGGAGATGCGTGGGCTGACATCTGCAGGCC	1	1	0.447538936456759	0.5	N	N	3.63502970664173	3.64297278570613	3.63502970664173	splitr	12	0.11	0.11	0	N	0.12	N	N	0	0	ENSG00000212932	ENSG00000212802	-	-	21	6	48111157	12515006	upstream	intron	RPL23AP4	RPL15P3	48110676	12514342	+	+	0.11	9827130	12514659	-	-	Y	-	1	N	SKBR3_13_2_1	14	1	11.5	9	2	1	N	N	1	0	2	0.794672128713653	0.827783467410055	0.827783467410055	0.794672128713653	2	-	0	0.60524179975777
55609	TGCCTCCCATGCTGCTGGCCCCACCATAGCCTCTGCCCAGGCCAGCCCGGAAGCTGGTGCTGCCCACTCGGGAGAAGCTTAAGGAGCTGAGGTGGGCACCAGGCCCACTCATGTGAGAGCAGCTGCTGAAGGCCCGGAGGCCAGAGGTGGACACCTTGTAGGACTTCTGGGTCACCCTG|ATGGACATGGTGGAGGCAGGAGTGGAGGCAGGCGGGCCGAACCAGGCAGAGATCCTAGAAGGAGCGGAGAAG	2	0.232208135162974	0.0758976243046465	0.0528632748897925	N	Y	3.48167806633553	3.1369689962243	3.1369689962243	splitr	251	0.722222222222222	0.708333333333333	0.666666666666667	N	0.736111111111111	N	N	0	138	ENSG00000227404	ENSG00000168944	-	-	7	5	38696213	122759286	intron	intron	KRT8P20	CEP120	38694805	122680579	+	-	0.722222222222222	38694813	122738029	-	-	Y	1	1.21176927801009	N	SKBR3_13_2_1	17	0	15	12	3	1	N	N	0	0	3	0.844339136758256	0.836061302084155	0.844339136758256	0.836061302084155	2	0	2	0.60524179975777
137004	TGTTTTTGAACACATTCCCCTTCACCTTCAGGTACAGGCTGTGATACATGTGGCGATCGATCTTCTTAGATTCACGGTATCTTCTGAGCAGCCGGCGCAAAATCCTCATTCTCCTCATCCATGTGACCTTCTCTGGCATTCGGGCATTGGCTG|TACCCATGTCTGCAGCAGGTCTCCGAGATGAGCAGACTCTGGCATGTTGGAACAATGTAGGTAAAGGAAGTCCTCAAGCCGGATCCATAACTTC	4	1	0.10838305367332	0.189716164252989	N	N	3.42953077915294	3.58271458558979	3.42953077915294	splitr	5	0.0531914893617023	0.0531914893617023	0	N	0.0851063829787235	N	N	129759	0	ENSG00000108298	ENSG00000252318	-	+	17	2	37360980	133038738	coding	downstream	RPL19	AC097532.1	37356536	133038647	+	-	0.0531914893617023	37359257	133038252	-	+	Y	-	-	N	SKBR3_13_2_1	10	1	9	8	2	3	N	N	0	1	2	0.827783467410055	0.463558741749631	0.827783467410055	0.463558741749631	0	-	-	0.60524179975777
129382	AATGGCGCAATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCC|ATGCTGGAGACCAAGTGGAGCCTCCTGCAGCGGCAGAAGATGGCTCAGAGCAACATGGACAACATGTTCGAGAGCTACATCAACAACCTTAGGAGGCAGTTGGAGACTCTGGGCCAGGAGAAGCTGAAGCTGGAAGCGGAGCTTGGCAACATGCAGGGGCTGGTGGAGGACTTCAAGAACAAGTACGAGGATGAGATCAATAAGCGTACAG	1	1	0.526775457519482	0.600084425908804	N	Y	3.48652612598689	3.5482584762506	3.48652612598689	splitr	271	0.733333333333333	0	0	N	0	N	N	419	0	ENSG00000156531	ENSG00000250221	-	+	X	5	133562820	97729234	utr3p	intron	PHF6	RP11-474J18.4	133507283	97727774	+	-	0	133551792	97728879	-	+	Y	-	1	N	SKBR3_13_2_1	1080	1	940	800	2	1	N	N	1	0	2	0.670504608602144	0.736727285994949	0.736727285994949	0.670504608602144	2	-	0	0.60524179975777
140538	CACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCC|AAGATCGCGCCATTGCACTCTAGCCTGGGCAACAAGAGT	1	0.0266986217489107	0.612610548302747	0.693969709788871	N	Y	3.56232542602083	3.76457638206971	3.56232542602083	splitr	118	0.94871794871795	0.897435897435897	1	N	0.897435897435897	N	N	356	0	ENSG00000111271	ENSG00000220804	-	-	12	2	112194903	243102304	intron	upstream	ACAD10	AC093642.5	112123857	243030784	+	+	0.923076923076923	112142015	126545499	-	-	Y	-	-	N	SKBR3_13_2_1	924	1	591.5	259	2	1	N	N	1	1	2	0.620837600557541	0.662226773928044	0.662226773928044	0.620837600557541	1	-	-	0.60524179975777
68490	TTTCTGGTGGGCCCTCTCTTTGGCCATGGCCAGGGAGATGTTGAAGTCTAGGATGGGGTCGGAGGAGGAGGTAGACGAGGG|GAAGATGGGGTGCTGGAGGAGAGCTTGTGGGAGCCAAGGAGCACCTTGGACATCTGGAGTCTGGCAGGAGTGATGACGGGTGGAGGGGCTAGCTCGAGGCAGGGCTGGTGGGGCCTGAGGCCAGTGAGGAGTGTGGAGTAGGCGCCCAGGCATCGTGCAGACAGGGCGACATCAGCTGGGGACGATGGGCCTGAGCTAGGGCT	2	1	0.258666488296237	0.373143407944048	N	N	3.06415450479316	3.1416492220063	3.06415450479316	splitr	4	0.0493827160493829	0.0493827160493829	0	N	0.0493827160493829	N	N	8913	83603	ENSG00000109062	ENSG00000130600	-	-	17	11	72765498	2022700	coding	intron	SLC9A3R1	H19	72744763	2016406	+	-	0.0493827160493829	72764649	2018995	-	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.579448427187038	0.827783467410055	0.579448427187038	1	-	-	0.60524179975777
125536	GCTGGGTGTGCAGCCCCCGAGGGGTCTCGGCAGCGCCCGGGTCTGGCTTTGCGTATTACAGTTCATCTTTCACAGCTTTCTGATCATCGTCTTCCTCCATGTCTGGCTCCTCTGCTTCTTCCAGGTCCTCGAGATCG|TCATCATCCCCACCATCATAGCCATCATCACCCTCCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACACTACTCCCTATATCTAACAACGTAAAAATAAAATGACAGTTTGAACACACAAAACCCACCCCATTCCTCC	2	0.843493178751266	0.258666488296237	0.373143407944048	N	N	3.46075454043327	2.94586788807298	2.94586788807298	splitr	11	2.22044604925031e-16	0	0	N	0.0072992700729927	N	N	25020	0	ENSG00000185624	ENSG00000225630	-	-	17	1	79818545	566063	coding	intron	P4HB	RP5-857K21.8	79801037	565020	-	+	2.22044604925031e-16	79803020	565846	+	-	Y	-	1	N	SKBR3_13_2_1	2	0	2	2	7	1	N	N	0	0	7	1.08439634230717	1.5562329187309	1.5562329187309	1.08439634230717	1	-	0	0.60524179975777
31157	AGGTGGATGGTGATCATCTGCAACAAGGCGTCTCCGGCAGGCAGCCAGCGGCGCATCACAGCCTTCAGCAGGGGTTTGCCTTCTTTGT|AGCCATCAATTTCATCACAACAATTATTAATATAAAACCCCCTGCCATAACCCAATACCAAACGCCCCTTTTCGTCTGATCCGTCCTAATCACAGCAGTCTTACTTCTC	1	0.286238989745407	0.311204357582937	0.306030290211129	N	N	3.38552945952599	2.95740468998701	2.95740468998701	splitr	0	0	0	0	N	0.0454545454545456	N	N	36789	0	ENSG00000167658	ENSG00000237973	-	-	19	1	3985461	567996	coding	intron	EEF2	RP5-857K21.6	3972316	566454	-	+	0	3981362	566933	+	-	Y	-	1	N	SKBR3_13_2_1	3	0	2.8	2	5	1	N	N	0	0	5	1.09267417698127	0.778116459365451	1.09267417698127	0.778116459365451	1	-	0	0.60524179975777
131657	GTTTCCTGCCGAACTTTCTCAAGCTCTTTAAACATATACGATTCCTCTTTGTATTTCAGGCCAAAGTGTCTCGGGATTGTGGACATCTTGACAAATTTG|ACCTCACTTCCATGAATCCTTGTTCCTCTCCTCATCACTCAGGGCCCCACAGAAAACAGATGGCATACAGGAAAGGGTTTTCCTAGGGAAAAAAATTTG	2	0.636725521399774	0.12528675945291	0.128734512121114	N	Y	3.508977235199	3.13014292531581	3.13014292531581	splitr	198	1	0.0303030303030303	0	N	0.848484848484848	Y	N	34	0	ENSG00000254868	ENSG00000253128	-	+	14	14	38510647	107281252	intron	downstream	CTD-2058B24.1	IGHV4-80	38080456	107281000	+	-	0	38091257	38075949	-	+	N	-	-	N	SKBR3_13_2_1	1	0.746268656716418	1	1	0	1	N	N	0	0.746268656716418	2	0.703615947298547	0.554614923164737	0.703615947298547	0.554614923164737	2	-	-	0.60524179975777
109191	CTATTTATGTGCTCCGGGTCCATCATCCACAACCTTAACAATGAACAAGATATTCGAAAAATAGGAGGACTACTCAAAACCATACCTCTCACTTCAACCTCCCTCACCATTGGCAGCCTAGCATTAGCAGGAATACCTTTCCTCACAGGTTTCTACTCCAAAGACCACATCATCGAAACCGCAAACATATCATACACAAACGCCTGAGCCCTATCTATTACTCTCATCGCTA|CCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGG	1	5.89164717375193e-05	0.20555784636729	0.155228020814782	N	N	3.44040523365767	3.53871326596283	3.44040523365767	splitr	16	0.0370370370370371	0.0370370370370371	0	N	0.0370370370370371	Y	N	54817	58402	ENSG00000198786	ENSG00000198712	+	-	MT	MT	14148	8269	coding	coding	MT-ND5	MT-CO2	12337	7586	+	+	0.0370370370370371	13582	7816	+	-	N	-	-	N	SKBR3_13_2_1	6	0	4.66666666666667	4	3	2	Y	N	0	0	3	0.513225749794234	0.90228397947696	0.90228397947696	0.513225749794234	2	-	-	0.60524179975777
129402	AATGCTAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGATGAAAAAGTGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAAGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCAGGCAGCTGAAGATGATGAAGATGACGATGTCAATACCAGGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGGTAAATT|AAAAAAAAAAAAGGGCCGCACGCGGTGGCTCACGCCTGTAATCC	3	0.695361570913106	0.130715914556096	0.197936974829114	N	Y	3.25256697878875	3.14215308311608	3.14215308311608	splitr	300	0.295454545454545	0	0	N	0.113636363636364	N	N	0	5931	ENSG00000185565	ENSG00000131504	+	-	3	5	117716095	140998622	intron	intron	LSAMP	DIAPH1	115528641	140894583	-	-	0.295454545454545	116745911	140995014	+	-	Y	1	2.10535900143159	N	SKBR3_13_2_1	45	0.843137254901961	31.5	18	2	1	N	N	0.671641791044776	0.843137254901961	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	2	0	70	0.60524179975777
77500	AGCAATCTCAATTACAATATATACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAAAGCCCCCGCACCAATAGGATCCTCCCGAATCAACCCTGACCCCTCTCCTTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAACCACCACCCCATCATACTCTTTCACCCACAGC|CTAATTATTAGCATCATCCCTCTACTATTTTTTAACCAAATCAACAACAACCTATTTAGCTGTTCCCCAACCTTTTCCTCCGACCCCCTAACAACCCCCCTCCTAATACTAACTACCTGACTCCTACCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAGTGAACCACTA	2	1	0.871805782194921	0.0528632748897925	N	N	2.85847416306589	3.07680408206379	2.85847416306589	splitr	10	0	0	0	N	0.149425287356322	Y	N	19641	93473	ENSG00000198695	ENSG00000198886	-	-	MT	MT	14673	12137	coding	coding	MT-ND6	MT-ND4	14149	10760	-	+	0	14365	10853	+	-	N	-	-	N	SKBR3_13_2_1	3	0	1.625	1	4	4	N	N	0	0	8	1.61417776144961	1.43206539861939	1.61417776144961	1.43206539861939	2	-	-	0.60524179975777
133101	GCGCGGCGATATCATCATCCATGGTGAGCTGGCGGCGGGTGTGGACGGGCGGCGGATCGGCAAAGGCGAGGCTCTGTGCTCGCGGGGCGGACGCGGTCT|CGGCGGTAGGCGGCTCGGCGGGCGAGCAGGAGGGAGCCATGGTGGCGGCGACACAGGGGGCAGCGGCGGCGGCGGGAAGCGGAGCCGGGACCGGGGGCGGAACCGCGTCTGGA	1	0.275895398278714	0.447538936456759	0.5	N	N	3.18292205468417	3.02651524775828	3.02651524775828	splitr	24	0.080808080808081	0.272727272727273	0	N	0.0909090909090909	N	N	30285	3280	ENSG00000075624	ENSG00000138668	-	+	7	4	5603415	83295656	utr5p	coding	ACTB	HNRNPD	5566782	83273651	-	-	0.080808080808081	5570225	83294782	+	+	Y	-	0.458567773314338	N	SKBR3_13_2_1	1	0.530054644808743	1	1	0	1	N	N	0	0.530054644808743	2	0.529781419142435	0.827783467410055	0.827783467410055	0.529781419142435	1	-	102.5	0.60524179975777
87413	GAAGGAGGAGATCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGAAATAAAACCTCCCACTTTGTCTGTACATACTGGCCTCTGTGATTACATAGATCAGCCATTAAAATAAAACAAGCCTTAATCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA|CAACGGTGGAGCCTTCGCACTCAATGCCAACTTTTTGTTACAGATTAATTTTTCCAT	4	0.732107692179377	0.807806667617636	0.752892601126868	N	N	1.69577065311683	3.73808832274579	1.69577065311683	splitr	35	0	0	0	N	0.0526315789473686	N	N	129759	6412	ENSG00000108298	ENSG00000136238	+	-	17	7	37360980	6443608	downstream	utr3p	RPL19	RAC1	37356536	6414154	+	+	0	37361010	6442169	+	-	Y	-	-	N	SKBR3_13_2_1	6	0.36	5	4	2	1	N	N	0	0.36	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	2	-	-	0.60524179975777
59098	GACAGATTCTACGGCACTGCTTTCATTTAATTGGGCTTTAGGCACTCCATTCGAATGCAGAACCTCACCTCTAGTTGAGACCAAGAATTGGCAAATTTGCATGAGCTCCTGGAAAGAGTTGCTGACTTTGTATCTAAGACCTGCCAGGGAATACCAAGAGTTGTTTCTAC|AGACTTTTTTTTTTTTTTTGTATTGGAAACTGGCAAGAGGGTTTCTCATCATC	1	0.934324217239705	0.899266171301115	0.897571427984624	N	N	3.68680627146374	2.94430560964297	2.94430560964297	splitr	23	0	0.433962264150943	0	N	0.490566037735849	N	N	1418	0	ENSG00000134294	ENSG00000179873	-	-	12	19	46766645	56348128	utr3p	intron	SLC38A2	NLRP11	46751972	56296770	-	-	0.433962264150943	46752893	56299726	-	-	Y	0.665543527668153	1	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	2	17	0	0.60524179975777
140026	GGGGTCTACATGGAAACTGTGAGGAGGGGAGATTCAGTGTGGTGGGGGACTGAGTGTGGCAGGGACTCCCCAGCA|GCTGAGGGTCACAGTGGCCGGAGGCGTCCACATCTCCGGGCTCCACACTGAGTCGGCCCCGCGGCGGCAGCAGGAGCAGCAGGTGCCC	1	0.210557159634515	0.526775457519482	0.600084425908804	N	N	3.09616017186285	3.49168728493972	3.09616017186285	splitr	10	0	0	0	N	0.04	N	N	0	94538	ENSG00000228232	ENSG00000169710	+	+	X	17	39647390	80056106	downstream	coding	GAPDHP1	FASN	39646386	80036215	-	-	0	39646330	80045104	+	+	Y	-	1.05711213727345	N	SKBR3_13_2_1	22	0	12	2	2	1	N	N	0	0	2	0.745005120669049	0.44700307240143	0.745005120669049	0.44700307240143	3	-	1242.5	0.60524179975777
108916	CAACTACCTAACCAACAAACTTAAAATAAAATCCCCACTATGCACATTTTATTTCTCCAACATACTCGGATTCTACCCTAGCATCACACACCGCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCT|CCACCACACACCACCTGTCCAAAAAGGCCTTCGATACGGGATAATCCTATTTATTACCTCAGAAGTTTTTTTCTTCGCAGGATTTTTCTGAGCCTTTTACCACTCCAGCCTAGCCCCTACCCCCCAATTAGGAGGGCACTGGCCCCCAACAGGCATCACCCCGCTAAATCCCCTAGAAGTCCCAC	2	0.00606082524872058	0.332952788415832	0.5	N	N	3.22064101730576	3.42936294528359	3.22064101730576	splitr	5	0.027027027027027	0.027027027027027	0	N	0.081081081081081	Y	N	54817	33743	ENSG00000198786	ENSG00000198938	+	-	MT	MT	14148	9990	coding	coding	MT-ND5	MT-CO3	12337	9207	+	+	0.027027027027027	14050	9413	+	-	N	-	-	N	SKBR3_13_2_1	2	0	2	2	2	3	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
52375	CAACTAACTACAATTGTATTGGCAGCTAGAGAGGACCCCTATGGTGTAGCCGTGGGTGGAACTGTGGGGCACTGCCTGTGCACGGGATTGGCAGTAATTGGAGGAAGAATGATAGCACAGAAAATCTCTGTCAGAACT|GGTAGTTTCTCTCCCTGGCTCATCTTGCATGCTTGCTCTGATGGAAAAGGTCACCTGGAAAGGAACTGAGGATAGCCTTCAGCCAGCAAGAAACCAAGGCCCTCAGTCCAACTGCCCATGAGGAACTGAAGTGTGCCAGCAACCACTAAGTGAGGTGGAAACAGATGCCACCTCAGTTGAACTTTGAGATGACTGTGGCTCCCACCAACACCTTGATTACAGC	1	0.214698035154845	0.12875022366714	0.0640797573534845	Y	Y	3.4446613039166	3.17142510556349	3.17142510556349	splitr	361	1	0	0	Y	1	N	N	1585	775	ENSG00000134851	ENSG00000134852	+	-	4	4	56292339	56413305	coding	intron	TMEM165	CLOCK	56262124	56298643	+	-	0	56290809	56318405	+	-	N	-	1.65467436028581	N	SKBR3_13_2_1	1	1	1	1	0	1	N	Y	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	9.5	0.60524179975777
141449	GTCGCACGGCGCCGGGCTGGGGGCGGGGGGGGGGGGGGGGGGGGGGGCGCCGTGCACGCGCAGAAACTCACGTCACGGCGGCGCGGCGCAGAGACGGG|AGCACAGGGGTGGCCAGCGTAGGGTCCAGCACGTGGGGTGGTACCCCAGGCCTGGGTCAGACAGGGACATGGCAGGGGACACAGGACAGAGGGGTCCCCAGCTGCCACCTCACCCACCGCAATTCATTTAGTAGCAGGCACAGGGGCAGCTCCGGCACGGCTTTCTCAGGCCTATGCCGGAGCCTCGAGGGCTGGAGAGCGGGAAGACAGGCAGTGCTCGGGGAGTTGCAGCAGGACGTCACCAGGAGGGCGAAGC	1	0.0994266184185896	0.447538936456759	0.5	N	N	3.09077774587819	3.10720246023693	3.09077774587819	splitr	3	0.030612244897959	0.030612244897959	0	N	0.030612244897959	N	N	0	83603	ENSG00000236875	ENSG00000130600	+	+	9	11	14522	2022700	upstream	intron	DDX11L11	H19	11987	2016406	+	-	0.030612244897959	11245	2018405	+	+	Y	-	0.800602019648769	N	SKBR3_13_2_1	4	0.549019607843137	3.5	3	2	1	N	N	0.549019607843137	0	2	0.422169568379128	0.827783467410055	0.827783467410055	0.422169568379128	1	-	3080.5	0.60524179975777
80197	TCGGTCCCAGGCGGGGCCACCAACGGACGTGAAGCCGGTGAGCCGCTCGGGGGGAAGAAGAGGATCGGCGGGCGGCGGGCGGGGAAGAGGGCACAGACGGGCGAGGGCCGGGGACCGTGAGGGCAAGGGCACCCGGGAGCCCGCAGAGGCGGCGGCTCGGGGAGAAACCTCAGGCAC|GGCCGTGTTTTCCTGGTGGCCCGGCCGTGCCTGAGGTTTCTCC	2	0.119894365958451	0.808744637905766	0.564257146108723	N	N	3.13167985619547	3.13656776864017	3.13167985619547	splitr	6	0.116279069767442	0	0	N	0.0930232558139537	N	N	0	1	ENSG00000212932	ENSG00000163046	-	+	21	2	48111157	133015542	upstream	intron	RPL23AP4	ANKRD30BL	48110676	132905164	+	-	0.116279069767442	9825472	133014578	-	+	Y	-	0.81549815498155	N	SKBR3_13_2_1	4	0	2.75	1	3	1	N	N	0	0	4	1.17545252372228	0.736727285994949	1.17545252372228	0.736727285994949	2	-	0	0.60524179975777
13456	CTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTGACCTGTTAGCGGATACCAGGATCCTGCCAATCACCAACCACGTCCACCCACAGGGACACAAACAAGCTCACCCAA|TACCAAACGCCCCTTTTCGTCTGATCCGTCCTAATCACAGCAGTCTTACTTCTCCTATCTCTCCCAGTCCTAGCCGCTGGCATCACTATACTACTAACAGACCGTAACCTCA	3	1	0.762457518543503	0.548268873166959	N	N	2.8835834012102	3.53937561337214	2.8835834012102	splitr	6	0	0	0	N	0.169642857142857	N	N	7494	0	ENSG00000170315	ENSG00000237973	-	-	17	1	16286054	567996	utr5p	intron	UBB	RP5-857K21.6	16284113	566454	+	+	0	16284426	566988	-	-	Y	-	1	N	SKBR3_13_2_1	21	0	7.625	2	8	1	N	N	0	0	8	1.22511953176688	1.00161799556617	1.22511953176688	1.00161799556617	2	-	0	0.60524179975777
141601	ACCGTGCCAGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTC|GGTGATACCACGTTCACGCTCAGCTTTCAGTTTATCCAAGACCCAGGCATACTTGAAGGAGCCCTTTCCCATCTCAGCAGCCTCCTTCTCAAATTTTTCAATGGTTCTTTTGTCGATGCCACCGCATTTATAGATCAGATGGCCAGTAGTGGTGGACTTGCCCGAATCTACGTGTCCAATGACGACAATGTTGATATGAGTCTTTTCCTTTCCCATTTT	1	0.852898793652806	0.311204357582937	0.306030290211129	N	N	3.48809356209009	3.71617157986699	3.48809356209009	splitr	2	1.11022302462516e-16	1.11022302462516e-16	0	N	0.157894736842105	N	N	0	0	ENSG00000226958	ENSG00000196205	-	+	X	9	108297792	135896553	intron	intron	RN28S1	EEF1A1P5	108297361	135894816	-	+	1.11022302462516e-16	108297519	135895088	-	+	Y	1	1	N	SKBR3_13_2_1	85	1	60.6666666666667	40	3	2	N	N	1	0	3	1.20028602774458	0.943673152847462	1.20028602774458	0.943673152847462	4	0	0	0.60524179975777
54792	GGCCATTTCCTTCTTTCGTTTTCCAGGTGCTTCTTTGACAGGCTCTTCCTCCTCCTCTTCTTCCTCCTCCTCATCATCTTCATCATCATCATCATCTTCCTCATCGTCATCGTCATCCTCATCATCTTCGTCATCCTCATCGTCCTCATCCTCTGAGGCAGGGGCAGCAGCTGCTGCTTTCATCGCTGCTGGTTCAATTTCATCTTCATCCTCATCCTCGTCCTCGTCATCCTCCTCATC|CTAACCCTACTCCTAATCACATAATCTATTCCCCCGAGCAATCTCTAGTACAATATACACACCAACAAACAATGTTCAACCAGTAACTACTACTAAT	1	0.456026046492622	0.899266171301115	0.897571427984624	N	N	2.65862240441426	3.30232144676095	2.65862240441426	splitr	8	0.0206185567010311	0.0206185567010311	0	N	0.0206185567010311	N	N	7868	31	ENSG00000115053	ENSG00000132570	-	+	2	5	232348352	134343649	coding	intron	NCL	PCBD2	232318242	134240596	-	+	0.0206185567010311	232326398	134260361	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	2	0.339181286549708	2	2	2	1	N	N	0.339181286549708	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	-	1	0.60524179975777
139946	CTGGAGGCGCTCTTCACGGCGCTTGCGTGCTTCCTTGGTCTTAGACCTGCGGGCCTCAGCCTGGTCAGCCAGGAGCTTCTTGCGGGCCTTGTCTGCCTTCAGCTTGTGGATG|CGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCTGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAG	1	0.522652924309353	0.375556752806067	0.399915574091196	N	N	3.38080938095063	3.5351195431132	3.38080938095063	splitr	5	0.0446428571428573	0	0	N	0.0982142857142857	N	N	129759	0	ENSG00000108298	ENSG00000212932	-	-	17	21	37360980	48111157	coding	upstream	RPL19	RPL23AP4	37356536	48110676	+	+	0.0446428571428573	37360396	9827216	-	-	Y	-	-	N	SKBR3_13_2_1	6	1	4.5	3	2	2	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
122150	GATCAGCACTGTGGTGAGCTCCAAGGAAGTGAATAAGTTTCAGATGGCTTATTCAAACCTCCTTAGAGCTAACATGGATGGGCTGAAGAAGAGAGACAAAAAGAACAAAACTAAGAAGACCAAAGCAGCAGCAGCAGCAGCAGCAGCAGCACCTGCCGCAGCAGCAACAGCACCAACAACAGCAGCAACAACAGCAGCAACAGCAGCA|ACCACCAGCAGCAGCAACAGCAGCAACAGTCCAGGCAACACCTGGTATGAAGAG	1	1	0.704121951840997	0.776581847210919	N	N	2.34878425159547	2.73924260485846	2.34878425159547	splitr	1	0	0	0	N	0.111111111111111	N	N	1977	0	ENSG00000140319	ENSG00000253128	+	+	15	14	40331389	107281252	coding	downstream	SRP14	IGHV4-80	40327891	107281000	-	-	0	40328540	78514865	-	+	Y	-	-	N	SKBR3_13_2_1	30	0	18	6	2	1	N	N	0	0	2	0.44700307240143	0.430447403053228	0.44700307240143	0.430447403053228	2	-	-	0.60524179975777
118353	CGCCGCCCGCTGCGCTCCTCACCCCTGCCTGCACCATCCTCCCTCCTGAGAGCTCATTCACTCCGCCCCGCCCGCCTCGCCTAGTCTGGTCTCGCCCCATGCCCT|TGCCTCCACTTCAACCACAGTGGCATCTGTGAGCTGCACTGCCCAGCCCTGGTCACCTACAACACAGACACGTTTGAGTCCATGCCCAATCCCGAGGGCCGGTATACATTCGGCGCCAGCTGTGTGACTGCCTGTCCCTG	1	1	0.375556752806067	0.399915574091196	N	N	3.01973837721295	3.53568860456667	3.01973837721295	splitr	7	0	0	0	N	0	N	N	83603	74211	ENSG00000130600	ENSG00000141736	-	-	11	17	2022700	37884915	intron	coding	H19	ERBB2	2016406	37844393	-	+	0	2017951	37866596	+	-	Y	-	0.421424380091452	N	SKBR3_13_2_1	1	0	1	1	0	3	N	N	0	0	2	0.438725237727329	0.827783467410055	0.827783467410055	0.438725237727329	1	-	1472	0.60524179975777
98265	CCTTCTTTCACTTTGCCAAACACCACATGCTTGCCATCCAACCACTCAGTCTTGGCAGTGCAGATGAAAAACTGGGAACCATTTGTGTTGGGTCCAGCATTTGCCATGGACAAGATGCCAGGACCCGTATGCTTTAGGATGAAGTTCTCATCTTCAAATTTCTCCCCATAGATGGACTTGCCACCAGTGCCATTATGGCGTGTGAAGTCACCACCCTGA|CCAACATGGTGAAACCCCATCTCTATCAAAAATACAAAAATTAGAATCCCCGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGTGGGGCCCAAGTCCTTCTGATCGAGGCCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTTGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTACGGA	1	9.6845787475032e-08	0.20555784636729	0.155228020814782	N	N	3.65401507408021	3.0521588522359	3.0521588522359	splitr	63	0	0	0	N	0	N	N	31758	0	ENSG00000196262	ENSG00000141161	-	+	7	17	44864163	33516364	coding	intron	PPIA	UNC45B	44836279	33474836	+	+	0	44839076	33478416	-	+	Y	-	1	N	SKBR3_13_2_1	14	1	11.5	9	2	1	N	N	0	1	2	0.827783467410055	0.703615947298547	0.827783467410055	0.703615947298547	1	-	0	0.60524179975777
127223	AGCTCTGTCAACTCCGTCTCATTGAGGGTCCTGAGGAAGTTGATCTCATCATTCAGGGCATCCACCTTGGCCTCCAGCTCCACCTTGCTCATGTAGGCAGCATCCACATCCTTCTTCAGCACCACAAACTCATTCTCAGCAGCTGTGCGGTGGTTAATTTCATCTTCGTACTTATTCTTGAAGTCCTCCACC|ACACTGAATCTCCCCTCCTCACAGTTTCCATGTAGACCCCTTGAAGAGGG	3	0.882828173661898	0.545501448874051	0.0447509784017533	N	N	3.50785087947327	3.31166831795583	3.31166831795583	splitr	14	0	0.0599999999999998	0	N	0.0599999999999998	N	N	34840	0	ENSG00000135480	ENSG00000228232	-	+	12	X	52662180	39647390	coding	downstream	KRT7	GAPDHP1	52626954	39646386	+	-	0	52629130	39646295	-	+	Y	-	-	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.662226773928044	0.827783467410055	0.662226773928044	2	-	-	0.60524179975777
135226	TTGTTTTCTATTAGACTATGGTGAGCTCAGGTGATTGATACCCCTGATGCGAGTAATACGGATGTGTTTAGGAGTGGGACTTCTAGGGGATTTAGCGGGGTGATGCCTGTTGG|GGGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAA	1	0.682698273625937	0.447538936456759	0.5	N	N	3.35513108135285	3.14636930058166	3.14636930058166	splitr	20	0.098901098901099	0.098901098901099	0	N	0.241758241758242	Y	N	3	0	ENSG00000230021	ENSG00000162669	-	+	1	1	659930	91870426	intron	intron	RP5-857K21.4	HFM1	536816	91726323	-	-	0.10989010989011	570107	91853145	-	+	N	0.828962371721779	1	N	SKBR3_13_2_1	3	1	2.33333333333333	2	3	2	N	N	0	1	3	0.894006144802859	0.513225749794234	0.894006144802859	0.513225749794234	1	0	0	0.60524179975777
133965	GTTGTAGCCAATTTTCTTAATGTAAGTGCTGACTTCCTTAACAATTTCCTCATATCTCTTCTGGCTGTAGGGTGGCTCAGTGGAATCCATTTTGTTAACACCGACAATTAGTTGTTTCACACCCAGTGTGTAAGCCAGAAGGGCATGCTCTCGGGTCTGCCCATTCTTGGAGATACCAGCTTCAAATTCACCAACACCAGCAGCAACAATCAGGACAGCACAGTCAGCCTTTAAAGAAAGCAAAGACATATCCCTGTCAACTCTCCAAATGACAAAAC|ATATAGCCTACCCCTTCCTTGTACTATCCCTGTGAGGCATAATTATAACAAGCTCCATCTGCCTGCGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATCCTCATCCAAACCCCCT	1	0.000461274346638459	0.254583648908217	0.223418152789081	N	N	3.28871850530713	3.48656597878024	3.28871850530713	splitr	9	0	0	0	N	0	N	N	108743	31	ENSG00000156508	ENSG00000132570	+	+	6	5	74233520	134343649	intron	intron	EEF1A1	PCBD2	74225473	134240596	-	+	0	74229001	134262960	+	+	Y	1.95697662202676	1.2575464834446	N	SKBR3_13_2_1	36	0	29	22	2	1	N	N	0	0	2	0.827783467410055	0.76156079001725	0.827783467410055	0.76156079001725	3	6303	1	0.60524179975777
108566	CACCCAGCTCCATGGTCCTCACCGTCTCATTGAGGGTCCTGAGGAAGTTGATCTCATCATTCAGGGCATCCACCTTGGCCTCCAGCTCCACCTTGCTCATGTAGGCAGCAT|TCCACCCCACCTTTTTCCTTCTCCCCAATTACTCCCCTGAATCAATGTACAAATCAGCACCCACATCCCCTTTCTTGACAAATGATTTTTCTAGAGAACTATGTTCTTCCCTGACTTTAGGGAAGGTGAATGTGTTCCCGTCCTCCCGCAGTCAGAAAGGAGACTCTGCCTCCCTCCTCCTCACTGAGTGCCTCATCCTACCGGG	1	0.11895248060812	0.447538936456759	0.5	N	N	3.52378108029205	2.83193062756757	2.83193062756757	splitr	11	0.0540540540540541	0.0540540540540541	0	N	0.0540540540540541	N	N	34840	8913	ENSG00000135480	ENSG00000109062	-	-	12	17	52662180	72765498	coding	coding	KRT7	SLC9A3R1	52626954	72744763	+	+	0.0540540540540541	52632471	72764839	-	-	Y	0.821634347458474	0.989112130783199	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.44700307240143	0.587726261861139	0.587726261861139	0.44700307240143	2	3848	422.5	0.60524179975777
129559	ACGGCACGAACTCGGCGGCGTGGACGTTGGGCACGAAGGGCTTGGCGTTGACGTTGAGTTGCCGGCTGAAGGCCGCGCTGAGGTTCTCCCGCTGGGCCTCGGCCGCCGCCGCCAGGGAGCCGCCGCCGCCGCAAGGGCCCGGCCCGGGGGCTTCCATGTCCGCCTGGTCCCAGCAGTCAGGCGCCGAGTCGCTGCTGCTGCTGCCGCTGCTGCTCCCGCCGCCGCCGCCGC|AGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACA	3	0.161522942144834	0.116011632945107	0.165947979709814	N	N	2.34986986771096	3.42680229220385	2.34986986771096	splitr	8	0	0	0	N	0	N	N	3620	0	ENSG00000103342	ENSG00000252318	-	+	16	2	12010519	133038738	coding	intron	GSPT1	AC097532.1	11961987	133038647	-	-	0	12009546	133038722	+	+	Y	-	1	N	SKBR3_13_2_1	4	1	3	2	2	1	N	N	0	1	2	0.554614923164737	0.504947915120133	0.554614923164737	0.504947915120133	3	-	0	0.60524179975777
112060	AAGATCCCTTTGACCAGGATGACTGGGGAGCTTGGCAGAAGTTCACAGCCAGTGCAGGAATCCAGGTAGTGGGGGATGATCTCACAGTGACCAACCCAAAGAGGATCGCCAAGGCCGTGAACGAGAAGTCCTGCAACTGCCTCCTGCTCAAAGTCAACCAGATTGGCTCCGTGACCGAGTCTCTTCAGGCGTAAGTGTCTTCCCAGGCGAGCAGCTTTCCCGCAGCTACGGCTTGTGAATCAG|CGGGGAAAGAAGACTCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACGTGAGAGGTGTAGAATAAGTGGGAGGCCCCCGGCGCCCCCCGGTGTCCCCGCGAGGGGTCCAGGGCGGGGTCTGCCGGCCCTGCGGGCCGCCGGTGAAA	1	0.00406210331598105	0.261533274614987	0.233421673643755	N	N	3.61360747730289	3.40847927217468	3.40847927217468	splitr	7	0	0	0.666666666666667	N	0	N	N	37212	0	ENSG00000074800	ENSG00000226958	-	-	1	X	8939308	108297792	intron	intron	ENO1	RN28S1	8921061	108297361	-	-	0	8923897	108297588	-	-	Y	2.88807447237185	1	N	SKBR3_13_2_1	6	1	3.66666666666667	2	3	1	N	N	0	1	3	1.02645149958847	0.852616971432356	1.02645149958847	0.852616971432356	2	1369	0	0.60524179975777
92619	GACGTGGCGACCCGCTGAATTTAAGCATATTTGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAA|GTCAAATTGAAGAAATTCAATGAAGCACAGGTAAATGGTGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCATGGTGAAGAGACATGAGA	1	0.114802651081098	0.375556752806067	0.399915574091196	N	N	3.45976132345673	3.34615493251855	3.34615493251855	splitr	0	0	0	0.25	N	0.0566037735849058	N	N	0	0	ENSG00000141161	ENSG00000137571	-	+	17	8	33516364	70747299	intron	intron	UNC45B	SLCO5A1	33474836	70584568	+	-	0	33478155	70602564	-	+	Y	1	1	N	SKBR3_13_2_1	5	1	4	3	4	1	N	N	1	1	4	0.885728310128759	1.20028602774458	1.20028602774458	0.885728310128759	2	0	0	0.60524179975777
130646	CCATATTCCCAGCTCCATTATTCAAATCATTTCCCATAGCCCAGCTCCTCTCTGTTCTCCCCCTACTACCAATTCTTTGGCTCTTACACAATTTTTATCCCTCAAAT|ATTAATCCCCTGGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTTTTTACCTGAGTAGGCCTAGAAATAAACATGCTAGCTTTTATTCCAGTTCTAACCAAAAAAATAAACCCTCGTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCA	5	1	0.220718995246473	0.31142126603274	N	N	3.14318615288597	3.36361271664718	3.14318615288597	splitr	20	0	0	0	N	0.0186915887850466	Y	N	13593	0	ENSG00000189334	ENSG00000225630	-	-	1	1	153589462	566063	utr3p	intron	S100A14	RP5-857K21.8	153586731	565020	-	+	0	153587126	565020	+	-	N	-	1	N	SKBR3_13_2_1	2	0	2	2	8	1	N	N	0	0	8	0.943673152847462	1.39067622524889	1.39067622524889	0.943673152847462	2	-	0	0.60524179975777
58981	CTTAACAAGCCACCTGCTCCAGAAGGCCACAGCCTGACCCTCCCAAGTGGAATATAAATGCCCAAGTGCCACATGAAGCCACCTCCTC|CTACTACCTAAAACAATCTCACAACACCAAATCTCCGCCTCCATCATCACCTCAACCCAAAAAGGCATAATCAAACTTTATTTCCTCTCTTTCTTCTTCCCACTCATCCTAACCCTACTCCTAATCACATAATCTATTCCCCCGAGCAATCTCTAGTACAATATACACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAA	4	1	0.131502894125589	0.247107398873132	N	N	3.54975555433691	3.04015804200544	3.04015804200544	splitr	13	0	0	0	Y	0	N	N	16908	31	ENSG00000127022	ENSG00000132570	-	+	5	5	179157926	134343649	coding	intron	CANX	PCBD2	179105629	134240596	+	+	0	179153758	134260469	-	+	N	-	1.2575464834446	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	1	0.60524179975777
124190	TTTCCGGTGACCAACACTGGTGAGGATGGCTTCCAAGGAACTGCGCCTGTTGATGCCTTCCCTCCCAATGGTTATGGCTTATACAACATAGTGGGGAACGCATGGGAATGGACTTCAGACTGGTGGACTGTTCATCATTCTGTTGAAGAAACGCTTAACCCAAAAGGTCCCCCTTCTGGGAAAGACCGAGTGAAGAAAGGTGGATCCTACATGTGCCATAGG|GCAGAGGCAAGGCTGGCAGCAAAACGGGCTGCCCGGGCAGAAGCAAGAGATATACGCATGAGAGAACTGGAACGACAACAAAAAGAGTTGGATGAAAAATCTGACAAACAGTATGCTGAAAATTATACAAGACCTTCATCTCGAAATTCTGCCTCAGCAACAAC	5	1	1	0.744012660474033	N	N	3.65657572715995	2.95910945473602	2.95910945473602	splitr	2	0.00609756097560998	2.22044604925031e-16	0	N	2.22044604925031e-16	Y	Y	481	569	ENSG00000144455	ENSG00000093167	+	-	3	3	4508965	37225180	coding	coding	SUMF1	LRRFIP2	3742498	37094117	-	-	0	4418014	37170640	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	Y	N	0	0	12	1.78801228960572	1.23339736644098	1.78801228960572	1.23339736644098	4	-	-	0.60524179975777
126440	ATATGCATGCATGTGTGGAGCACTGATTGTTGCTTGGAAACCTATTGATTGTGGAGAATCCATGTATGGGTTACATTTTGCATAGTGGGAGCGGTCTGTAGCCAGCATCACTTCAAATACTTTATCTGTCTTGATGATTCCATTTTTGCGGAGATTGTGGATTAGCTCCGAGTGGCTGGCGCCGCCGGATTTCCAGGCCATCGCTAAGCACACTCGGAGCAGGTACAGAACCACCTTCAGCGCGACGACGGTGCCCAGCAGTTTTCCCAAGAGTGAGACCACCTCCCACACCGTCA|CCGCCCCGCACACCGCCAGGCCTCTGGACGCTGA	1	0.0416662358998528	0.311204357582937	0.306030290211129	N	N	3.26360926716282	3.21322829800656	3.21322829800656	splitr	9	0	0.264705882352941	0	N	0.294117647058823	N	N	1692	498	ENSG00000120265	ENSG00000171316	-	-	6	8	150132556	61779465	coding	intron	PCMT1	CHD7	150070579	61591337	+	+	0	150070943	61626985	-	-	Y	-	0.651710862186981	N	SKBR3_13_2_1	8	0.5	5	2	2	1	N	N	0	0.5	2	0.629115435231642	0.430447403053228	0.629115435231642	0.430447403053228	2	-	4	0.60524179975777
116038	CCCACCAACTGCAAAATCTGTTCCTGGCATTAAGCTCCTTCTTCCTTTGCAATTCGGTCTTTCTTCAGTGGTCCCATGAATGCTTTCTTCTCCTCCATGGTCTGGAAGCGGCCATGGCCAAACTTGGAGGTGGTGTCAATGAACTTAAGGTCAA|GCTCCTCCTCGCCCGCCGCTAGGTCCATCCCGGCCCAGCCACCATGTCCATCCACTTCAGCTCCCCGGTATTC	1	1	0.704121951840997	0.776581847210919	N	N	3.62208911259722	3.00397601026352	3.00397601026352	splitr	20	0.136986301369863	0.136986301369863	0	N	0.26027397260274	N	N	22077	34840	ENSG00000100316	ENSG00000135480	-	-	22	12	39716394	52662180	coding	utr5p	RPL3	KRT7	39708887	52626954	-	+	0.136986301369863	39709275	52627038	+	-	Y	-	0.010209161955686	N	SKBR3_13_2_1	6	0	5.5	5	2	1	N	N	0	0	2	0.612559765883441	0.422169568379128	0.612559765883441	0.422169568379128	1	-	69.5	0.60524179975777
123032	AATAAGCTTTTACAAACTGATGATGAAGAGGAAGCCGGCTTATTGGAGCTCTTAAAATCCCAGATTTGTGATAATGCCGCACTCTATGCACAAAAGTACGATGAAGAATTCCAGCGATACCTGCCTCGTTTTGTTACAGCCATCTGGAATTTACTAGTTACAACGGGTCAAGAGGTTAAATATGATTT|GGAACAAGATGTGGCTGTGGCAAGCGGCCAGCCATCCCCGGTGCCGAGGGACCTGGGAGAAGCTAGGGCAGCTCCGGCATTGTTCCTGCCCTGTGGTCCACAGCCTCGTCTTCATCTAGCGTCTGCACCCCCTAACCGTCTTTCCAAAGCCTCGGGGATGGCAGGGAAACTGCAGGGCTTGGGATCCCGCAGAACCAAAGAGT	15	1	0.849326852155235	0.327816183702836	N	Y	3.39384326095097	3.58271458558979	3.39384326095097	splitr	168	0	0	0	Y	0	N	N	4856	0	ENSG00000124207	ENSG00000255697	+	-	20	20	47713489	62959443	coding	downstream	CSE1L	AL137028.1	47662838	62956710	+	-	0	47688989	47956856	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	22	1.59762209210141	1.481732406664	1.59762209210141	1.481732406664	1	-	-	0.60524179975777
123039	AGGAACCGTACCTTGTCTATGAAGGAGGCAAACTTGTTGTTGAGGGTCTTGATCTGCTCCTTCTCCTGGGTGCGCACGGCCTGGATGTTGGGGTCCACCTCCAGGACAAGGGGGCTCAGCAGGCTCTGGTTGACCGTAACTGCGGTGATGCCTCCCATGCCGCTGGCCCCACCATA|GCCGCCGCCCCCGCGCCCGCTCGCTCCCTCCCGTCCGCCCGTCCGCGGCCCGTCCGTCCGTCCGTCCGTCGTCCTCCTCGCTTGCGGGGCGCCGGGCCCGTCCTCGCGAGGCCCCCCGGCCGGCCGTCCGGCCGCGTCGGGGCCTCGCCGCGCTCTACCTACCTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC	1	2.09275417489665e-13	0.467532148991838	0.526369772984128	N	N	3.45041445226185	2.18292463352077	2.18292463352077	splitr	22	0.0511363636363636	0	0	N	0	N	N	64916	0	ENSG00000170421	ENSG00000212932	-	-	12	21	53298868	48111157	coding	upstream	KRT8	RPL23AP4	53290971	48110676	-	+	0.0511363636363636	53298606	9826842	+	-	Y	-	-	N	SKBR3_13_2_1	72	1	40.3333333333333	1	2	1	N	N	0	1	3	0.827783467410055	0.745005120669049	0.827783467410055	0.745005120669049	2	-	-	0.60524179975777
140864	AGTATTTTCGATCTCTGTGCATGCATCAGGGAAATATGCCATCACAACTTCTTCTGATACAGCACAATTATGGGACTTGGATACCTTTCAGAGAAAAAGAAAGCTGAATATTCGCCAGTCTGTGGGTATACAGA|AGGTGGGGAGCATTAAGCGGGAAATGACCTTCACATTTCAGTCAGAGGACTTAAAACGTGACTGTGGTAAAAAAATGTCTCATCAACACGTGTTTTCCTTGGCCATGGAGGAAGA	3	1	0.672179231214042	0.357980465865342	N	N	3.65384724021086	3.588962247475	3.588962247475	splitr	6	0.0347826086956522	0.0347826086956522	0	N	0.0347826086956522	N	Y	1318	5752	ENSG00000156787	ENSG00000164684	+	+	8	8	124164393	81787016	coding	intron	WDR67	ZNF704	124054208	81540686	+	-	0.0347826086956522	124096580	81733850	+	+	N	-	3.93346262580527	Y	SKBR3_13_2_1	1	0	1	1	0	1	Y	N	0	0	2	0.703615947298547	0.471836576423731	0.703615947298547	0.471836576423731	4	-	25.5	0.60524179975777
82281	CAACAATTATATTACTACCACTGACATGACTTTCCAAAAAACACATAATTTGAATCAACACAACCACCCACAGCCTAATTATTAGCATCATCCCTCTACTATTTTTTAACCAAATCAACAACAACCTATTTAGCTGTTCCCCAACCTTTTCCTCCGACCCCCTAACAACCCCCCTCCTAATACTAACTACCT|AACAATCCCCCTCTACCTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTCTAACAGCCCTAGACCTCAACTACCTAACCAACAAACTTAAAATAAAATC	1	0.456026046492622	0.375556752806067	0.399915574091196	N	Y	2.77845864556636	3.20807114562183	2.77845864556636	splitr	297	1	1.11022302462516e-16	0	Y	0.219047619047619	N	N	93473	54817	ENSG00000198886	ENSG00000198786	+	-	MT	MT	12137	14148	coding	coding	MT-ND4	MT-ND5	10760	12337	+	+	0	10970	13776	+	-	N	-	-	N	SKBR3_13_2_1	2	0	1.5	1	1	1	N	N	0	0	2	0.827783467410055	0.44700307240143	0.827783467410055	0.44700307240143	2	-	-	0.60524179975777
74014	AGAGAAGATGCCCTAAGGCTTCTTCAGACTGGTCAAGAAAGAGCTAGACCTGGTGCTTGGAGAAGAGACATCTTTGGAAGAATCATCTGGCACAAGTTCAAGCAGTGGGTTATACCTTGGCACCTAAATAAAAGATACAATAGGAAACGATTCTTTGCCTTGCCTTATGTGGACCATTTTCT|CAGAGGTAAGCATCAGAAGCACATGGGAGCTTTTCCAAAACACATATGCTAAGCCCTTCCCAAATAAAAATAAATTACTACTTATAAGCAGTGT	2	1	0.686645868634774	0.128734512121114	Y	Y	3.50000108636471	3.42936294528359	3.42936294528359	splitr	276	1	0.0425531914893617	0	Y	0.319148936170213	N	N	963	1220	ENSG00000136522	ENSG00000136518	+	+	3	3	179322442	179306196	coding	intron	MRPL47	ACTL6A	179306073	179280668	-	+	0	179310435	179300290	-	+	N	-	0.864156325817691	N	SKBR3_13_2_1	1	0.611764705882353	1	1	0	1	N	Y	0	0.611764705882353	4	1.36584272122659	0.703615947298547	1.36584272122659	0.703615947298547	1	-	39.25	0.60524179975777
48793	TTATGATGAGCCCGTTTGTCAGCGTCGCTCTCCACCTCGATGTCATCGTTATCGCTCATTTCCTACGGCCCAGGGAGCGGCCACTGCAGCGGCGGCGGGGAGGGGAAGGGGTGAAGGGGAGGGGGAAGTCACCGACAACAACAAGCCGAGTCCCCCCCACACACACACTCACTCACTCACTCACTCGCTCTCTCACTCAC|CCACCACATTAACAACATAAAACCCTCATTCACACGAGAAAACACTCTCATGTTCATACACCTATCCCCTATCCTCCTCCTA	1	0.721684973445008	0.899266171301115	0.897571427984624	N	N	2.23906232173876	3.14843544012144	2.23906232173876	splitr	5	0	0	0	N	0.0243902439024392	N	N	522	31	ENSG00000125952	ENSG00000132570	-	+	14	5	65569227	134343649	utr5p	intron	MAX	PCBD2	65472892	134240596	-	+	0	65569198	134262467	+	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	2	0.0106382978723404	2	2	2	1	N	N	0.0106382978723404	0	2	0.778116459365451	0.504947915120133	0.778116459365451	0.504947915120133	2	-	1	0.60524179975777
70344	TAGCCAGCTGCTTCAGGAAAACCACCCTCTTGCCCCTGTGGCGTCCAGTGAGGATGATCAGAATGGTCCCGGGGGTAATGCTGGCTCGCAGTTTTCTCACGTGCTGACTGAAGGG|TTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGTAGTGGTGTGATCCCGGCTCACTGCACCAGTAGACAGGTATGACAGATATTCCAAAAGTAGATGAGTCACCTTTTCCCCTGAAACATCAAGAATCCCCACCCCCCCAACCCCCCCCCCCCCGCCCCCCGCCGCAGGCTAAAGATCCTCTTTCCTAAC	1	0.0436407812110598	0.12875022366714	0.0640797573534845	N	N	3.63040291402221	2.2938958234657	2.2938958234657	splitr	85	0	0	0	N	0	N	N	0	0	ENSG00000243199	ENSG00000020219	-	-	4	7	66440046	152144235	intron	downstream	RP11-408P14.1	CCT8L1	66439177	152142562	+	+	0	66439573	152148576	-	-	Y	1	-	N	SKBR3_13_2_1	55	0.351851851851852	18.6	4	5	1	N	N	0	0.351851851851852	5	0.720171616646748	0.44700307240143	0.720171616646748	0.44700307240143	2	0	-	0.60524179975777
115667	GTTGTCTTCTATGAAGTGTTTTTTTTGTTGGTTTTTTTTTTTTTTTTT|TTTAAACAGTTTTCAAAAGTTCTTAAAGGCAAGAGTGAATTTCTGTGGATTTTACTGGTCCCAGCTTTTAGGTTCTTTAAGACACTAACAGGACTACATAGAGGCTTTTTCAGCATTACTGTGTCGTCTCCGTGCCAGATGTGGCAAGATCACCATTAGCAAATGGAAATTACATTTGAAAGCCATTAGACTTATAGGTGATGCAAGCATCTAAGAGAGAGGTTAATCACACT	1	1	0.800133926999915	0.844771979185218	N	Y	2.15091143057202	3.21704729445613	2.15091143057202	splitr	25	0.4375	0.4375	0	N	0.479166666666666	N	N	1098	5525	ENSG00000066777	ENSG00000108953	+	-	8	17	68255912	1303505	intron	utr3p	ARFGEF1	YWHAE	68085747	1247566	-	-	0.4375	68120867	1248586	-	+	Y	-	-	N	SKBR3_13_2_1	21	1	12	3	2	1	N	N	1	0	2	0.413891733705027	0.827783467410055	0.827783467410055	0.413891733705027	2	-	-	0.60524179975777
110992	TTAGTCTTCATGGTGTTCCCCTCCTGGGATCCCAGAATCGTGTTGCTCTTCTTTTCTTGCCAATGTATCTTAATAACATCAGGGAAAAATTTCTCAAGAAGACAAAGGTATGTTCCAGCCTTCTGGAGCTTTGTTTCAGCAATTGAAGGAAGAAAAATAGTGGGCTTGGGGGAAACATCTGCATCAAGTTGTTTAT|CTGTGACAACAAGTGTTGTTCCACTGCCAAAGAGTTTCTTATAATAATTCCACAGTGATTCAGTCCATATCAAAAACTCTAATTCAGTTTCCCTGAGTTCTTCAAATTCTGGTGGTCTGGGATTCTCAAAAGACCAGGG	13	0.66962807899935	0.426254738896006	0.614423546536068	Y	Y	3.40215706237596	3.36720643949681	3.36720643949681	splitr	335	1	0	0	Y	0.985611510791367	N	N	0	0	ENSG00000211689	ENSG00000211690	+	-	7	7	38305279	38309141	coding	coding	TRGC1	TRGJ1	38297480	38309092	-	-	0	38305279	38309092	+	-	N	1	1	N	SKBR3_13_2_1	4	0.201492537313433	4	4	3	1	N	Y	0	0.201492537313433	3	1.21684169709278	1.04300716893667	1.21684169709278	1.04300716893667	4	0	0	0.60524179975777
138124	CCTAGGATTGTGGGGGCAATGAATGAAGTGAACAGATTTTCGTTCATTT|CGGTTTAATCTAGTGTGTGACTGGGTCTGTGTGAGGGAGAGAGTGTGTGTGGTGTGGAGGTGAAACGGAGGCAAGAAAGGGGGCTACCTCAGGAGCGAGGGACAAAGGGGGCGTGAGGCACCTA	1	0.280696313700176	0.612610548302747	0.693969709788871	N	N	3.31998211938081	3.19761149907036	3.19761149907036	splitr	8	0.0612244897959185	0.0612244897959185	0	N	0.0612244897959185	N	N	3	20564	ENSG00000230021	ENSG00000167258	-	-	1	17	659930	37690800	intron	utr5p	RP5-857K21.4	CDK12	536816	37617739	-	+	0.0612244897959185	569074	37617750	-	-	Y	0.828962371721779	0.0734292410199027	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.480114411097832	0.827783467410055	0.827783467410055	0.480114411097832	1	0	21.5	0.60524179975777
138397	ATATCTTTAAACTGACCATCTGGCATAACAGCTGTGGCTTTGAAGTTGGGGGCAGGGTGCCCAATTTTAGCATTTCCTGAAGACATCTTCCTATCAGCAGTCCCAACACAAGTCGCAGAAACTAAC|CACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATTACCACCCAACAATGACTAATCCAACTAACCTCAAAACAAATGAT	1	0.221307271943572	1	0.935920242646516	N	N	3.46910819465161	2.80150174417089	2.80150174417089	splitr	12	0.0238095238095239	0	0	N	0.0555555555555557	Y	N	9078	3	ENSG00000117450	ENSG00000230021	-	-	1	1	45988719	659930	utr5p	intron	PRDX1	RP5-857K21.4	45976708	536816	-	-	0.0238095238095239	45987529	569014	+	-	N	-	0.828962371721779	N	SKBR3_13_2_1	4	0	3.5	3	2	1	N	N	0	0	2	0.60428193120934	0.827783467410055	0.827783467410055	0.60428193120934	3	-	0	0.60524179975777
141243	GCTTCAGGAGCTGCTTTCTGTTTGGCCATTTCCTTCTTTCGTTTTCCAGGTGCTTCTTTGACAGGCTCTTCCTCCTCCTCT|TCTCTCCTACTCCTGCTTGCATCTGCTATAGTGGAGGCCGGCGCAGGAACAGGTTGAACAGTCTACCCTCCCTTGGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTATCTCCTCTATCTTAGGAGCCATCAATTTCATCACAACAATTATTAATATAAAACCCCCTGCCATAACCCAATACCAAACGCCCCTTTTCGTCTGATCCGTCCTAATCACAGCAGTCTTACTTCTCCTATCTCTCCCAGTCCTAGCCGCTGGC	1	0.000806154181878339	0.447538936456759	0.5	N	N	3.13586556843752	3.56439156556061	3.13586556843752	splitr	16	2.22044604925031e-16	0	0	N	0	N	N	7868	0	ENSG00000115053	ENSG00000237973	-	-	2	1	232348352	567996	coding	intron	NCL	RP5-857K21.6	232318242	566454	-	+	2.22044604925031e-16	232325393	566775	+	-	Y	-	1	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.438725237727329	0.463558741749631	0.463558741749631	0.438725237727329	1	-	0	0.60524179975777
57835	TGGGAGAACTCTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAGTCACAGCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAAAC|CCTCATCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCATATCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAACCCACC	7	0.384701265022116	0.141308049313376	0.3665541737335	N	N	3.08355044738558	2.84437670807212	2.84437670807212	splitr	6	0.0413793103448276	0.0413793103448276	0	N	0.103448275862069	Y	N	93473	24767	ENSG00000198886	ENSG00000198763	+	-	MT	MT	12137	5511	coding	coding	MT-ND4	MT-ND2	10760	4470	+	+	0.0413793103448276	12041	5294	+	-	N	-	-	N	SKBR3_13_2_1	4	0	3.33333333333333	2	3	4	N	N	0	0	3	0.736727285994949	0.844339136758256	0.844339136758256	0.736727285994949	2	-	-	0.60524179975777
138306	GCTGGCCTTCTCTGTACCCTCCAATGACATCTGGGGGTTGCTCAGGGTCAGTACCAAGTCATCGGCCCCAAAGGTGGCAGCAGGGGGAACAGAGGCCAGGGTGGAGTCCTCCG|CAGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTT	68	0.660087552081805	0.172034356020356	0.639790954653328	N	N	3.28808666312136	3.43614916339873	3.28808666312136	splitr	3	0	0	0	N	0	N	N	4385	0	ENSG00000163435	ENSG00000252318	-	+	1	2	201986316	133038738	coding	intron	ELF3	AC097532.1	201977073	133038647	+	-	0	201980326	133038723	-	+	Y	-	1	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.720171616646748	0.413891733705027	0.720171616646748	0.413891733705027	1	-	0	0.60524179975777
53836	TCGGAAAAGCGCAGTATTCGGGTGGGAGTGACCCGATTTTCCAGTGAGATGAACCCGGT|ACCTCCGATGGAAATGCAGAAATCACCCATTTTCCGCGTCGCTCACGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTTGGCCATCTTGGCTCCTCCCCGGCATTTTTCTTACTTTTTATTTAGGACCAGTTTGTTGTCTTGC	3	0.45948705132764	0.951795713797723	0.862493518840099	N	Y	3.22895481873075	3.50575423470996	3.22895481873075	splitr	177	0.864406779661017	0.169491525423729	1	N	0.305084745762712	N	N	13	0	ENSG00000249894	ENSG00000246228	+	+	5	8	67185924	128494384	intron	intron	RP11-434D9.2	RP11-382A18.1	67096568	128302062	-	-	0.864406779661017	67185533	128323919	-	+	Y	-	1	N	SKBR3_13_2_1	43	0.610619469026549	24.6666666666667	3	3	1	N	N	0.582089552238806	0.610619469026549	3	0.554614923164737	0.935395318173362	0.935395318173362	0.554614923164737	1	-	0	0.60524179975777
135777	ACCTACTAGCCCTACCTACTAACCCTACCTACTAGCCCTACCTACTAGCCC|ATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCC	1	0.00659032161289579	0.447538936456759	0.5	N	N	2.41165565113716	2.66445102704406	2.41165565113716	splitr	15	0.235294117647059	0	0	N	0.431372549019608	N	N	1179	3	ENSG00000129657	ENSG00000230021	-	-	17	1	75213183	659930	utr3p	intron	SEC14L1	RP5-857K21.4	75084831	536816	+	-	0.235294117647059	75212395	569038	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	14	1	10.6666666666667	8	3	1	N	N	1	0	3	0.60428193120934	0.827783467410055	0.827783467410055	0.60428193120934	1	-	0	0.60524179975777
121762	ATCATTGCTCCTCCTGAGCGCAAGTACTCCGTGTGGATCGGCGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGACGAGTCCGGCCCCTCCATCGTCCACCGCAAATGCTTCTAGGCGGACTATGACTTAGTTGCGTTACACCCTTTCTTGACAAAACCTAACTTGCGCAGAAAACAAGATGAGATTGGCATGGCTTTATTTGTTTTTTTTGTTTTG|TTTTTTTTTTTTTTTTTTTTTGGCTTGAACAACCTGAGAGCAGAGTCTGCAG	6	1	0.573180702964477	0.9213972590231	N	Y	2.81087912058931	2.50546516763251	2.50546516763251	splitr	42	0.519230769230769	0.519230769230769	0.25	N	0.653846153846154	N	N	30285	0	ENSG00000075624	ENSG00000095110	+	-	7	11	5603415	114430617	utr3p	intron	ACTB	FAM55A	5566782	114392437	-	-	0.519230769230769	5567277	114411587	-	-	Y	-	1	N	SKBR3_13_2_1	60	1	25	12	4	1	N	N	0	1	4	1.35756488655249	0.45528090707553	1.35756488655249	0.45528090707553	2	-	0	0.60524179975777
124444	CTTCTCTGGCATTCGGGCATTGGCTGTACCCTTCCGCTTACCTATGCCCATGTGCCTGCCCTTCCGGCGGGCCAAGGTGTTTTTCCGGCATCGAGCCCGGGAATGGACCGTCACAGGCTTGCGGATGATCAGCCCATCTTTGATGAGCTTCCGGATCTGCTGACGGGAGTTGGCATTGGCGATTTCATTGGTCTCATTGGGGTCTAACCAGACCTTCTTCTTGCCACAGCGGAGGACACTAGAGGCGAGCCTCTT|CCGCAGCCATGAGTATGCTCAGGCTTCAGAAGAGGCTCGCCTCTTCTGTC	13	0.234960422600382	0.899276252317835	0.98088745497055	N	N	3.56761456604966	3.66273010308932	3.56761456604966	splitr	1	0.02	0.02	0	N	0.24	N	N	129759	458	ENSG00000108298	ENSG00000114126	-	+	17	3	37360980	141868386	coding	intron	RPL19	TFDP2	37356536	141663277	+	-	0.02	37357482	141763048	-	+	Y	-	1.33362700623785	N	SKBR3_13_2_1	1	0.0980392156862745	1	1	0	1	N	N	0	0.0980392156862745	2	0.45528090707553	0.422169568379128	0.45528090707553	0.422169568379128	2	-	4	0.60524179975777
141519	TGGGGAGGGAAGGGACTCACCTGCCCGGCAGATGGGGTCCTCACCTGCCCGCTGCTGCCAGCTACACCTCCGTTGCCCAGGCCCTGGGATCAAACCCTGCCCACCAGCTCCCCTCGTCCAACCAGCTGCCACGTCCTGTAACCAAAAGTGACCGGGATGAATGCCTGGCTCCCCCTTCTTTCCAGCCCTAGCTCAGGCCCATCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCC|CTCCTCACAGTTTCCATGTAGACCCCTTGAAGAGGGGAGGGGCCTAG	1	0.0092426618622061	0.899266171301115	0.897571427984624	N	N	3.14740237035155	3.4780843434859	3.14740237035155	splitr	7	0.0851063829787231	0.0851063829787231	0	N	0.0851063829787231	N	N	83603	0	ENSG00000130600	ENSG00000228232	-	+	11	X	2022700	39647390	intron	downstream	H19	GAPDHP1	2016406	39646386	-	-	0.0851063829787231	2018910	39646281	+	+	Y	-	-	N	SKBR3_13_2_1	2	0	2	2	2	3	N	N	0	0	2	0.827783467410055	0.44700307240143	0.827783467410055	0.44700307240143	3	-	-	0.60524179975777
99566	TCTGAACAAATGCCTGAGTGCTGGGGCACTTTTTTTTTTTTTTTTTTT|AGACAGAGTTTTGCTTTTGTTGCCCAAGGTGGAGTGCAATGGTGTGATCTCGGCTCACTGCAACCTCTGCCTCCCTGGGTTCAAGCAATTCTCTTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCACATCCGGCTAATTTTGTATTTTCAGTAGGGACAGAATTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCTGCCTCAGCCTCCT	1	0.511211649793655	0.704121951840997	0.776581847210919	N	Y	2.69839908537686	3.31233066536513	2.69839908537686	splitr	229	0.5	0.5	0	N	0.5	N	N	0	2051	ENSG00000165478	ENSG00000146223	+	+	11	6	124806308	42857663	utr3p	utr3p	HEPACAM	RPL7L1	124789089	42847356	-	+	0.5	124790587	42857178	-	+	Y	-	-	N	SKBR3_13_2_1	1344	1	702	60	2	1	N	N	0.584905660377358	1	2	0.438725237727329	0.554614923164737	0.554614923164737	0.438725237727329	2	-	-	0.60524179975777
94559	CTCGGTCTCCTCCGTAGCCCCCACCTCGGTCTCCTCCATAGCCGCCACCACTCCTGTCTCCTCCATAGCCTCCACTTCGGTCTCCACCGTAGCCACTGCCACCACCACGGTCTCCTCCATAGCCCCCCCGGCTT|CTGTCCTTTCTCTCTCCCCGGACAGCATGAGCTTCACCACTCGCTCCACCTTCTCCACCAACTACCGGTCCCTGGGCTCTGTCCAGGCGCCCAGCTACGGCGCCCGGCCGGTCAGCAGCGC	1	0.773213797860988	0.261533274614987	0.233421673643755	N	N	3.30165909935164	3.43039601505348	3.30165909935164	splitr	5	0.0413223140495866	0.0413223140495866	0	N	0.0578512396694216	N	N	1731	31732	ENSG00000172660	ENSG00000111057	-	-	17	12	34174237	53346684	coding	utr5p	TAF15	KRT18	34136488	53342655	+	+	0.0413223140495866	34171881	53342932	-	-	Y	1.07891494729288	0.0757771824411444	N	SKBR3_13_2_1	4	0.229050279329609	2.5	1	1	1	N	N	0.229050279329609	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	3	97.5	991.5	0.60524179975777
129381	GAGGTCATCCTTGAAAAGTGGCAGAAAAAGAAAATAGCAGAGATGGGTCCAGTGCAGTGGCTTGCCACTCAAAAGAAGGCAGCAGACAAAGTCGTCTTCCTTCTTTCCAATGACGTCAACAGTGTGTGCGATGGTACC|AAGAAGCTTGTTTTTGGTCTTCGGCAGTGACATTTCCTCCCCATTCACCACACAAACGCAGCCCGCTCTCGTAACA	1	0.891382498953717	1	0.935920242646516	Y	Y	3.75913982972405	3.58064844605001	3.58064844605001	splitr	214	0	0	0	Y	0	N	N	14	346	ENSG00000056736	ENSG00000113812	+	+	3	3	53899827	53916229	coding	utr3p	IL17RB	ACTR8	53880607	53901093	+	-	0	53899047	53902702	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	2	0.711893781972647	0.521503584468335	0.711893781972647	0.521503584468335	1	-	-	0.60524179975777
80335	GTGTATTCGTAGGTTCAGTACCATTGATGGCCAATTGATTTGATGGTAAAGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGTAGGGATGGGAGGGCGA|TGACGGACGAGGAGATGGCGGCGCTAGGCAAGGAAGAGCTAGTGCGGCGCCTGCGGCGGGAGGAGGCGGCGCGCCTGGCGGCACTG	2	0.547013857249903	0.808744637905766	0.0727055885476373	N	N	3.33255199106474	3.27820542559317	3.27820542559317	splitr	21	0.209302325581395	0.186046511627907	0	N	0.279069767441861	N	N	3	795	ENSG00000230021	ENSG00000175602	-	-	1	11	659930	65659105	intron	coding	RP5-857K21.4	CCDC85B	536816	65657875	-	+	0.209302325581395	568363	65658286	-	-	Y	0.828962371721779	0.252948560977731	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.538059253816536	0.438725237727329	0.538059253816536	0.438725237727329	1	0	77.5	0.60524179975777
132445	GTCGCCGCCCGCGAGGCCCGCCTTGGCCACGGGCTCTGGAGGCCAGTGCCTCCCGCTCGCCGCCCGCTGCGCTCCTCACCCCTGCCTGCACCATCCTCCCTCCTGAGAGCTCATTCACTCCGCCCCG|CCCGCCATCATCCTAGTCCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCC	3	0.480654837201658	1	0.92722806243242	N	N	3.23164345288648	3.08507803069543	3.08507803069543	splitr	19	0.00787401574803137	0	0	N	0.015748031496063	N	N	83603	3	ENSG00000130600	ENSG00000230021	-	-	11	1	2022700	659930	intron	intron	H19	RP5-857K21.4	2016406	536816	-	-	0.00787401574803137	2017916	568341	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	5	7	N	N	0	0	5	1.37412055590069	0.985062326217965	1.37412055590069	0.985062326217965	1	-	0	0.60524179975777
84355	GCTTCGAGCCAATGGTGAGCTCCTTCTGGATCAGCTCCTTCAGCTCCTTCTTGCTCAGGGTGTGCTTGTCACCCTCCCTGCCGGAGTACTTGTGGAAGATGGCCACGAGGAGGCCAATGGCCTGATCCAGGGGGCATGCCATGGCTGAGGGCTGGGCTTGGAGCTGGCAGCAGAGGGC|AGCCAGGTCTCCAGCTGGGGTGGACGTGCCCACCAGCTGCCGAAGGCCAAGACGCCAGGTCCGGTGGACGTGACAAGCAGGACATGACATGGTCCGGTGTGACGGCGAGGACAGAGGAGGCGCGTCCGGCCTTCCTGAACACCTTAGGCTGGTGGGGCTGCGGCAAGAAGCGGGTCTGTTTCTTTACTTCCTCCACGGAGTCGGCACACTATGGCTGCCCTCTGGGCTCCCAGAACCCACAACATGAAAGAAATGGTGCTACCCAGCTCAAGCCTGGGCCTTTGAATCCG	1	1.75103478448013e-06	0.612610548302747	0.693969709788871	N	N	2.93292729402847	3.3446273492087	2.93292729402847	splitr	1	0.0056179775280899	0.0056179775280899	0	N	0.0056179775280899	N	N	24283	83603	ENSG00000197956	ENSG00000130600	-	-	1	11	153508720	2022700	intron	intron	S100A6	H19	153507075	2016406	-	-	0.0056179775280899	153507851	2017653	+	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	2	N	N	0	0	2	0.827783467410055	0.728449451320848	0.827783467410055	0.728449451320848	4	-	-	0.60524179975777
68548	CACACAGCTTGTGCCAGCGATGAAGGAGAAGTAATTGTTTTTGGTGGATGTGCCAACAACTTGCTTGTCCATCACAGAGCTGCACACAGTAATGAAATACTAATATTTTCAGTTCAACCAAAATCTCTTGTACG|TTACATTTAAGAGAAAGAAGGCCCAGGAGCAGTGGTTCACGCCTATAATCCTAGGACTCTGGAAGGCTCAGGCTGAGGCGGGTGGATCGCTTGAGCCCAGGAGTTCAAGACCAGCCTAAGCAACATGGAGAAACACCATCTCTACAAAA	1	1	0.899266171301115	0.897571427984624	Y	Y	3.34359427943881	3.39380340815762	3.34359427943881	splitr	283	1	0	0	Y	1	N	N	676	641	ENSG00000165516	ENSG00000165525	+	-	14	14	50249909	50319539	coding	intron	KLHDC2	NEMF	50234326	50249997	+	-	0	50249312	50252298	+	-	N	-	0.339906813231044	N	SKBR3_13_2_1	11	1	6.5	2	2	1	N	Y	0	1	2	0.827783467410055	0.579448427187038	0.827783467410055	0.579448427187038	4	-	15	0.60524179975777
132131	CCACACCCCTTTTGATCAAAAAAAAAAAAAAAAAAAAAAAAAAG|AGGCCGCCGTGACCTATTCACCCTCCACTTCCCGTCTCAGAATCTAAACGTGGTCACCTTCGAGTAGAGAGGCCCGCCCGCCCACCGTGGGCAGTGCCACCCGCAGATGACACGCGCTCTCCACCACCCAACCCAAACCATGAGAATTTGCAACAGGGGAGGAAAAAAGAACCAAAACTTCCAAGGCCCTGC	2	1	0.14642513198438	0.165868294288181	N	N	2.05203433681338	3.54296933622177	2.05203433681338	splitr	22	0.204545454545454	0.204545454545454	0	N	0.590909090909091	N	N	8	14698	ENSG00000133874	ENSG00000187514	-	-	8	2	33424643	232578251	utr3p	utr3p	RNF122	PTMA	33405273	232571605	-	+	0.227272727272728	33405525	232577597	+	-	Y	-	0.431293384017557	N	SKBR3_13_2_1	154	0.377358490566038	96	8	3	1	N	N	0.377358490566038	0	3	0.438725237727329	0.703615947298547	0.703615947298547	0.438725237727329	2	-	934.333333333333	0.60524179975777
54315	GTCGGTTGTTGATGAGATATTTGGAGGTGGGGATCAATAGAGGGGGAAATAGAATGATCAGTACTGCGGCGGGTAGGCCTAGGATTGTGGGGGCAATGAATGAAGTGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTTTGTTATAGTTTTTTATTTTTATGGGCTTTGGTGAGGGAGGTAGGTGGTAATTTGTATTTAATATTTTTAGTTGGGTGATGAGGAATAGTGTAAGGAGTATGGGGGTAATTATGGTGGGTCATACGGTAGTATTTAGTTGGGGCATTTCACTGTAAAG|TTTAGTTTAAAAGTTGTAGGTGATTAAAATAATTTGAAGGCGATCTTTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACGCAGGGAGAATTGCGTCATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACTGGAAGACAGAAGTACGGGAAGGCGAAGAAAAGAATAGAGAAGATA	1	5.83327177825026e-17	0.375556752806067	0.399915574091196	N	N	3.3844963897561	2.85807293548177	2.85807293548177	splitr	5	0	0	0	N	0.643122676579926	N	N	0	0	ENSG00000242368	ENSG00000251562	-	-	1	11	568913	65273940	intron	intron	AC114498.6	MALAT1	568844	65265233	+	+	0	568903	65266915	-	-	Y	1	1	N	SKBR3_13_2_1	4	1	3.33333333333333	3	3	1	N	N	0	1	3	0.852616971432356	0.463558741749631	0.852616971432356	0.463558741749631	2	0	0	0.60524179975777
140835	CTTGGGTTCTTTCAAAAAATTCGTGAGGAGAGCTGTCTACAGTGGAATAGGGGGTCTCCCTGGGGAATGCAGGCCAAGTCCTTTTATTTTAACATGATGTCCATGAAGAGGTTTGCCGTCTGGGCAGCCCTGTCGGCAAGGAGCGTGCATACTGCGTTTGTGTAATTGTTTGCTGTATCTCCCTTCCCTCTGAGCTGTATTGTTCTTTAATGGCTGTCTTGCCCTTCCAAAAAAAATTGA|AAAAAAAAAAAAAAAAAAAAACCCGAAACAACAATAGTGTAGATCTAAGA	2	1	1	0.97388564551795	N	Y	3.1825606798934	2.20116041208418	2.20116041208418	splitr	40	0	0.54	0	N	0.56	N	N	805	679	ENSG00000136026	ENSG00000168781	+	+	12	15	106641908	43982283	utr3p	intron	CKAP4	PPIP5K1	106631659	43825660	-	-	0.54	106631791	43958887	-	+	Y	-	3.94405734138064	N	SKBR3_13_2_1	43	0.882352941176471	24.5	17	4	1	N	N	0	0.882352941176471	4	1.5479550840568	0.422169568379128	1.5479550840568	0.422169568379128	2	-	1	0.60524179975777
102441	GCGTCGCGGTTCTGGCGGCATCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGAGGGTGTAAATC|TCGCGCCCGGCTGTACCCATATCCACAGCATTCCTCCCTCTGGAACT	69	0.0266986217489107	0.745584204245449	0.961148249186554	N	Y	3.34984194132402	3.40488554932505	3.34984194132402	splitr	118	0	0	1	N	0.723404255319149	N	N	0	0	ENSG00000239935	ENSG00000252194	+	+	5	1	71146942	108113552	intron	downstream	AC116340.1	AC114491.2	71146740	108113461	+	-	0.808510638297872	71146940	108113108	+	+	Y	1	-	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	0.96	1	2	0.413891733705027	0.422169568379128	0.422169568379128	0.413891733705027	1	0	-	0.60524179975777
77512	TTGGCGCTGGGGGAGGAGTTGCCCCCTAGGGCAGCCAGCAGGTAGGAGGCGACGTAGCGCATCGCGGCGGCGTCTGCGGCGGAGGCGGCGGAGAAG|AAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTACGG	8	0.00597929201818144	0.0720679470936723	0.172246535076178	N	N	3.02335325771631	3.75744441254485	3.02335325771631	splitr	9	0.09375	0	0.125	N	0.09375	N	N	10215	0	ENSG00000177600	ENSG00000141161	-	+	11	17	812880	33516364	utr5p	intron	RPLP2	UNC45B	809647	33474836	+	+	0.09375	810007	33478212	-	+	Y	-	1	N	SKBR3_13_2_1	4	1	1.75	1	4	1	N	N	0	1	8	1.10095201165537	1.19200819307048	1.19200819307048	1.10095201165537	2	-	0	0.60524179975777
126559	GGTCTGGTGTGGGTTTGTAGTGGAGGCTGCTCCTGTGTGTCTGGTTCCGCTGGCTGCAGAAGCGAAAGTCTTCCCTGTGGCCCCTGCCGTGGGCACCTTGGACCAGGAAGAGCAGACTCAGCAGGAACAGTGTCGTCTGCAGCAGCGACTGGGGAGTCATTTTCCTCCGACGGAGTCACTCTTGGAAGTCACCACCTGTGGTCCCAGCTACTAGGGAGGCTGAGGTGGAAGGATCACTTGAGCCCAGGAGGTCGAGGCTGCAGTGAGCTATAACTGCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACCC|TCCAGGTCTGGGCAGGTCCCTCACCGGCCTGTGCCTGTGTGGCCTGCTCCTCCCCTTCCACCTCCTCCCAGGGCCACAGGCACCCAGTCTGAG	9	0.00325712915392599	0.88071931041499	0.343798764929579	N	Y	3.31270138772572	3.21079963257092	3.21079963257092	splitr	407	1	0.021505376344086	0	N	0.741935483870968	Y	N	2685	18	ENSG00000205336	ENSG00000203451	-	+	16	16	57698944	90233540	utr5p	upstream	GPR56	AC133919.1	57662419	90232651	+	+	0	57683714	57654047	-	+	N	-	-	N	SKBR3_13_2_1	1	0.101382488479263	1	1	0	4	N	N	0.101382488479263	0	42	1.79629012427982	0.819505632735954	1.79629012427982	0.819505632735954	1	-	-	0.60524179975777
136976	AACTTCGAAGACACCATTGTCAATGGTGAGAAGAGACACATCGAAGGTTCCGCCACCCAGGTCAAACACCAGGATGTTCTTC|TCCCCCACCACACTGAATCTCCCCTCCTCACAGTTTCCATGTAGACCCCTTGAAGAGGGGAGGGGCCTAGGGAGCCCCACCTTGTCATATACCATCAATAAAGTACCCTGTGCTCA	1	0.300464945855085	0.447538936456759	0.5	N	N	3.59425138750382	2.98251392813132	2.98251392813132	splitr	6	0	0	0	N	0.097560975609756	N	N	7273	0	ENSG00000044574	ENSG00000228232	-	+	9	X	128003622	39647390	coding	downstream	HSPA5	GAPDHP1	127997132	39646386	-	-	0	128001565	39646304	+	+	Y	-	-	N	SKBR3_13_2_1	12	0	8	4	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	-	0.60524179975777
141518	GATTCAAAGGCCCAGGCTTGAGCTGGGTAGCACCATTTCTTTCATGTTGTGGGTTCTGGGAGCCCAGAGGGCAGCCATAGTGTGCCGACTCCGTGGAGGAAGTAAAGAAACAGACCCGCTTCTTGCCGCAGCC|CCACCAGCCCCAGTAAGAGCACAAGAGGAAGAGAGAGACCCTCACTGCTGGGGAGTCCCTGCCACACTCAGTCCCCCACCACACTGAATCTCCCCTCCTCACAGTTTCCATGTAGACCCCTTGAAGAGGGGA	1	1	0.526775457519482	0.600084425908804	N	N	3.56807857436608	2.90372981949456	2.90372981949456	splitr	9	0.0681818181818182	0.0681818181818182	0	N	0.128787878787879	N	N	83603	0	ENSG00000130600	ENSG00000228232	-	+	11	X	2022700	39647390	intron	downstream	H19	GAPDHP1	2016406	39646386	-	-	0.0681818181818182	2017403	39646375	+	+	Y	-	-	N	SKBR3_13_2_1	3	0	2.5	2	2	3	N	N	0	0	2	0.827783467410055	0.720171616646748	0.827783467410055	0.720171616646748	1	-	-	0.60524179975777
138556	CACCTCTTCCTCCTCCTCCACCGCCGCCGCCGCCTCCACCTCCTCCTCGTCCACGACCTCTAAAGCCTCCGCCTCGACCTCGGCCCCCGCCAAAGCCCCCTCGGCCTCCACG|ACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAG	1	1	0.254583648908217	0.223418152789081	N	N	2.92548807607384	2.78470630745157	2.78470630745157	splitr	26	0.044642857142857	0.044642857142857	0	N	0.044642857142857	N	N	3323	3	ENSG00000105202	ENSG00000230021	-	-	19	1	40337054	659930	coding	intron	FBL	RP5-857K21.4	40325094	536816	-	-	0.044642857142857	40331368	569012	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	4	0.476190476190476	3	2	3	1	N	N	0.476190476190476	0	3	0.869172640780558	0.538059253816536	0.869172640780558	0.538059253816536	1	-	0	0.60524179975777
137097	GGAGGTGGCACTTTTGATGTGTCAATCCTCACTATTGAGGATGGAATCTTTGAGGTCAAGTCTACAGCTGGAGACACCCACTTGGGTGGAGAAGATTTTGACAACCGAATGGTCAACCATTTTATTGCTGAGTTTAAGC|ATATTTGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGG	2	0.525604192486025	0.0902043147701342	0.0727055885476373	N	N	3.73808832274579	3.57639237579107	3.57639237579107	splitr	16	1.11022302462516e-16	1.11022302462516e-16	0	N	0.183673469387755	N	N	37875	0	ENSG00000109971	ENSG00000141161	+	+	11	17	122933938	33516364	coding	intron	HSPA8	UNC45B	122928197	33474836	-	+	1.11022302462516e-16	122930562	33478234	-	+	Y	-	1	N	SKBR3_13_2_1	3	1	3	3	2	1	N	N	0	1	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	1	-	0	0.60524179975777
76826	GGCACGCGCTTGGGTGTGCTGGCGGGGGAGCTGTGGTTGGTGGCCGGAGAGGACACGGGGGACGACTCGCTGCTCAGTGAGGACCCT|GAGCCCGCAGGTACACACGGCGGGGCACCGCGCTCACACCAGGCTTGGGTTCCTGCCAACGCTCTCCAACCACTGCGTAAATCAGGGGTCCCCAGCGGCAGCCCCGGGGTCCCTGCTAAATGCAGCGGCTTCAAATGACAGTTGAACTCCCGGAATACGATACCCTAGAGAAAAGCTA	2	1	0.075897432469696	0.0528632748897925	N	Y	3.24103017687471	3.14528279764928	3.14528279764928	splitr	265	0	0	0	N	0.103448275862069	Y	N	4520	18	ENSG00000131149	ENSG00000203451	-	+	16	16	85709810	90233540	coding	upstream	KIAA0182	AC133919.1	85645023	90232651	+	+	0	85667737	85587598	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	4	N	N	0	0	2	0.587726261861139	0.579448427187038	0.587726261861139	0.579448427187038	2	-	-	0.60524179975777
122884	ACCAACCTGACCTACATGGAGAAACTCCGCCTCTAGTAAAAATACAAAATTAGCCGGGCATGGTGGTGCACGCCTCTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAAGTGGAGGTTGCAGTGAGCCAAGAGTACACCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCG|TCTTAAAAAAAAAAAAAAAAGAAAGAGACAAAAAAAAAAAAAAAAAAA	4	1	0.961195691255898	0.98765403301614	N	Y	3.35823029066252	1.91301830198167	1.91301830198167	splitr	242	0.729166666666667	0.5	0.333333333333333	N	0.5625	N	N	6037	0	ENSG00000197879	ENSG00000060982	+	-	17	12	1395995	25102393	utr3p	intron	MYO1C	BCAT1	1367480	24964295	-	-	0.583333333333334	1368129	24986776	-	+	Y	-	-	N	SKBR3_13_2_1	30	1	20	6	3	1	N	N	1	1	3	0.488392245771932	0.438725237727329	0.488392245771932	0.438725237727329	1	-	-	0.60524179975777
133316	CCCGGACACGGGAGGCGCTACGCCAGGACCGACGGGAAGGTTTTCCAGTTTCTTAATGCGAAATGCGAGTCGGCTTTCCTTTCCAAGAGGAATCCTCGGCAGATAAACTGGACTGTCCTCTACAGAAGGAAGCACAAAAAGGGACAGTCGGAAGAAATT|AAAAAAAAAAAAACCCGCAGAGCTAACGTGGTGTCAGGGAGAAAAGTC	2	0.606132694473333	0.419771231117896	0.626856592055952	N	N	3.20128492750669	3.09451818784614	3.09451818784614	splitr	23	0.333333333333333	0.395833333333334	0	N	0.395833333333334	N	N	5060	719	ENSG00000114391	ENSG00000197417	+	+	3	17	101405626	3539616	coding	intron	RPL24	SHPK	101399935	3511893	-	-	0.333333333333333	101401743	3515105	-	+	Y	-	0.923092465992757	N	SKBR3_13_2_1	16	0.788461538461538	10	4	2	1	N	N	0	0.788461538461538	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	2	-	28.5	0.60524179975777
135567	GCCTGGCTCCCCCTTCTTTCCAGCCCTAGCTCAGGCCCATCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTG|GTTTCCTCCTCCCTGTCCCCTGAGGGCACACTGACCGTGGAGGCCCCCATGCCCAAGCTAGCCACGCAGTCCAACGAGATCACCATCCCAGTCACCTTCGAGTCGCGGGCCCAGCTTGGGGGCCCAGAAGCTGCAAAATCCGATGAGACTGCCGCCAAGTAAAGCCTTAGCCCGGATGCCCACCCCTGCTGC	2	0.000175864341402874	0.332952788415832	0.5	N	N	3.05740813947137	3.23999710710482	3.05740813947137	splitr	3	0.0156249999999999	0.0156249999999999	0	N	0.0208333333333331	N	N	83603	6424	ENSG00000130600	ENSG00000106211	-	-	11	7	2022700	75933612	intron	coding	H19	HSPB1	2016406	75931861	-	+	0.0156249999999999	2019000	75933329	+	-	Y	-	0.306845991851069	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.612559765883441	0.827783467410055	0.827783467410055	0.612559765883441	3	-	969.5	0.60524179975777
136097	CATAGGACCTCATACCCTTCCCCAACACTACCTGGAAGTTGTGCCTTCCTCATGAAACTGGCAGAAACCCCTTCCCAAGCTTCTGTATTGAAAAACAATTAGGAATCATTGCAGATTTTTTTTTATTCTGCTCCCACCTCCCACCCGGGACTACTTGCTGGTGACT|TTTTTTTTTTTTTTTTTTTTAAATAGAGACAGGGTCTTGCTCTACTGCC	1	0.908528142172785	1	0.935920242646516	N	N	3.20443756997885	2.5944263287428	2.5944263287428	splitr	32	0.489795918367347	0.489795918367347	0	N	0.530612244897959	N	N	2451	127	ENSG00000181789	ENSG00000167595	+	+	3	19	128996614	36260766	utr3p	intron	COPG	C19orf55	128968449	36249044	+	+	0.489795918367347	128996445	36253651	+	+	Y	-	-	N	SKBR3_13_2_1	6	0.509803921568627	5	4	2	1	N	N	0	0.509803921568627	2	0.728449451320848	0.422169568379128	0.728449451320848	0.422169568379128	2	-	-	0.60524179975777
19472	CGCAGGTCGCCTGGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTATTCGTAGGTTCAGTACCATTGATGGCCAATTGATTTGATGGTAAAGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGTAGGGATGGGAGGGCGATAAGGACTAGGATGATGGCGGGCAGGATAGTTCAGACGGTTTCTATTTCCTGAGCGTCTGAGATGTTAGTATTAGT|CAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCG	1	0.0889970248462776	0.800133926999915	0.844771979185218	N	N	3.44040523365767	3.52680574168822	3.44040523365767	splitr	7	0	0	0	N	0.10752688172043	N	N	3	0	ENSG00000230021	ENSG00000141161	-	+	1	17	659930	33516364	intron	intron	RP5-857K21.4	UNC45B	536816	33474836	-	+	0	568287	33478226	-	+	Y	0.828962371721779	1	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	1	0	0	0.60524179975777
131590	AACCCCGGTCCCAGCGGAGCGCCCGGCACGCGCCGACACTTCAGCACCAGTCGCGGTGGCCACCACTGTGCGCGGAGATGGCTGCGACGCGTGCGCAGATCTCGATCCCAAACTCCCTCCTGCCAGAATCTGGACCCGAATCCACCCATTGCCCATTTTCCGCTGCCGCTGGAGAGAATCTCTGAGGTCCCCAGGACAGCCTGCCTGCACGGAAGAGATGCCTCCTC|GGGAAATTTGTGCACAGAGATAACACAGGGGATATGCCATATGAAGATGAAGGCAGAATTCTACAAGCCCAGGAATGCCAAAGATTGCCAGCAAA	2	1	0.332952788415832	0.5	N	Y	3.46335504630636	3.30128837699106	3.30128837699106	splitr	322	1	1.11022302462516e-16	0	Y	0.91578947368421	N	Y	8	3	ENSG00000237357	ENSG00000226007	+	-	9	9	44404440	46846357	intron	downstream	RP11-475I24.3	RP11-211N8.2	44401766	46843638	+	+	0	44402090	46844104	+	-	N	-	-	N	SKBR3_13_2_1	30	1	28	24	3	1	N	N	0	1	3	0.894006144802859	0.45528090707553	0.894006144802859	0.45528090707553	4	-	-	0.60524179975777
141299	GGGTTGGACCTTCTCAAACAGGGCGCGGGTCTGTGCTGTATCCGTGAGATCGGCGTCTTTAGAGGAGACAAACACCCAGTCCTCTCCAGGAAGTCCAGCTCCATCTGCTACCACCTTCTGGATGGCTTTGCCTACCAGCCCAGAGCCCCCTGTCACTAGAATCCGCATGGATCCCTGGGGTTCACCCATGTCAGTTGCACCTGCGTCCAGCCCCA|CCGCCCCCCCCCCCCGCCGGCCTCCTGAAGTGTTGGGATTAC	1	1	0.261533274614987	0.233421673643755	N	N	3.32423818963975	2.99831614787411	2.99831614787411	splitr	10	0	0.119047619047619	0	N	0.119047619047619	N	N	952	1098	ENSG00000104522	ENSG00000137815	-	-	8	15	144700218	41775761	utr5p	intron	TSTA3	RTF1	144694788	41709302	-	+	0	144699658	41718901	+	-	Y	-	0.774034318017078	N	SKBR3_13_2_1	50	1	26	2	2	1	N	N	0	1	2	0.786394294039552	0.488392245771932	0.786394294039552	0.488392245771932	2	-	30	0.60524179975777
71108	CGAAGGCCCGCGGCGGGTGTTGATGCCATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCACGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTTGTCATCTAATTAGTGACGCACATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAATGGGCTTGGCGGAATCAG|CGGGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCT	1	1.32958830449624e-12	0.612610548302747	0.693969709788871	N	N	3.47486134299686	3.21700744166278	3.21700744166278	splitr	30	0	0	0.2	N	0.970338983050847	N	N	356	0	ENSG00000149262	ENSG00000162669	+	+	11	1	77705724	91870426	intron	intron	INTS4	HFM1	77589766	91726323	-	-	0.652542372881356	77597713	91853146	+	+	Y	1.69881089015784	1	N	SKBR3_13_2_1	6	1	3.8	2	5	1	N	N	1	1	5	0.860894806106457	1.62245559612371	1.62245559612371	0.860894806106457	2	3	0	0.60524179975777
6368	GCCTGGTCAGCCAGGAGCTTCTTGCGGGCCTTGTCTGCCTTCAGCTTGTGGATGTGTTCCATGAGAATCCGCTTGTTTTTGAACACATTCCCCTTCACCTTCAGGTACAGGCTGTGATACATGTGGCGATCGATCTTCTTAGATTCACGGTATCTTCTGAGCAGCCGGCGCAAAAT|CCCCATACTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAAATACAAATTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTC	1	0.0126967582323892	0.800133926999915	0.844771979185218	N	N	3.80297331548166	2.98272161479402	2.98272161479402	splitr	2	0	0	0	N	0	N	N	129759	3	ENSG00000108298	ENSG00000230021	-	-	17	1	37360980	659930	coding	intron	RPL19	RP5-857K21.4	37356536	536816	+	-	0	37359307	568956	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	39	0	16	3	3	2	N	N	0	0	3	1.22511953176688	0.811227798061854	1.22511953176688	0.811227798061854	3	-	0	0.60524179975777
140945	TCCGTTATGGTAGCGCTGCAGTAGCGACTCGCTTGCAGAGGAACCCTCCTCAGCTTCCCCCTCGACGGGGTGACGGGGGGAGAGCGAGGGTTCCGCCGGCCACCGCGGTGGTGGCCGAGCGCGGCTCGTCGCCTACTGTGG|CCCGCGCCTCCCCCTTCCGAGTCGGGGGAGGATCCCGCCGGGCCGGGCCGGCGTCCTAGCGGTTGGGAGGC	10	0.515696929012364	0.96360050745325	0.928919422870223	N	Y	3.32948747687522	2.8972397758265	2.8972397758265	splitr	212	0.887323943661972	0	0	N	0.845070422535211	N	N	0	1	ENSG00000227195	ENSG00000256642	-	-	20	16	26189869	33962503	intron	coding	RP3-410C9.1	NCRNA00273	26167655	33961052	-	-	0.887323943661972	26189311	33961278	-	-	Y	1	0.924642049736247	N	SKBR3_13_2_1	2	0	1.25	1	1	1	N	N	0	0	4	0.852616971432356	0.471836576423731	0.852616971432356	0.471836576423731	1	0	0	0.60524179975777
137911	TTAAGCATATTTGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGC|GGGACAAGTGGCCTTCAGCCACCCGAAATTGAGCAATAACAGATCTGTGATGCCCTTAGATGTCCGGGACTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTACC	1	0.95156169173627	0.254583648908217	0.223418152789081	N	N	3.02700976129824	3.65384724021086	3.02700976129824	splitr	4	0.0185185185185185	0	0.5	N	0.0648148148148148	N	N	0	1	ENSG00000141161	ENSG00000256642	-	-	17	16	33516364	33962503	intron	upstream	UNC45B	NCRNA00273	33474836	33961052	+	-	0.0185185185185185	33478133	33963949	-	-	Y	1	-	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	1	2	0.463558741749631	0.695338112624446	0.695338112624446	0.463558741749631	1	0	-	0.60524179975777
115311	TTCTGGCCACAGCACTTAAACACATCTCTGCCAAACCCCAAAAACAAAGAACCCTAACACCAGCCTAACCAGATTTCAAATTT|TATCAATATAAAACCCCCTGCCATAACCCAATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAGCTGCTGGCATCACTATACTACTAACAGAC	1	0.219940592763899	1	0.935920242646516	N	Y	3.13127862861135	2.90679433368408	2.90679433368408	splitr	216	0	0.0120481927710844	0	Y	0.0963855421686747	N	N	0	121749	ENSG00000210049	ENSG00000198804	+	-	MT	MT	647	7445	upstream	coding	J01415.2	MT-CO1	577	5904	+	+	0	400	6407	+	-	N	-	-	N	SKBR3_13_2_1	6	0	3.16666666666667	1	5	1	N	N	0	0	6	0.678782443276245	1.30789787850789	1.30789787850789	0.678782443276245	2	-	-	0.60524179975777
133045	CTTCTTGGTATCGACATCGTCATCCTCATCATCTTCAGCTGCCCGCTTGCCCGTAGCTGACTCAGCTTCCTCATCTTCATCTCCATCCTCTTCCTCACCATCACCTTCTTCTTCCTCCTCCTCTTCCTCCCCACCTTCT|TCCTCTTCTTCCTCCTCCTCTTCCTCTTCTTCTTCTTCCTCCTCATCTTCCTCCTCCTCGTCGTCTTCCTCCCCTTCCCCTGCTAAGCCTGGCCCTCAGGCCTTGCCCAAACCTGCAAGCCCCAAGAAGCCA	9	1	0.344144581189242	0.621845331294053	N	N	2.43069440883542	1.91687165141613	1.91687165141613	splitr	95	0.401515151515151	0.0909090909090909	0	N	0.340909090909091	N	N	14698	5610	ENSG00000187514	ENSG00000167978	-	-	2	16	232578251	2821411	coding	coding	PTMA	SRRM2	232571605	2802330	+	+	0.0909090909090909	232576653	2819137	-	-	Y	-	1.15092201878691	N	SKBR3_13_2_1	8	0.568	6	5	3	1	N	N	0	0.568	3	0.75328295534315	0.869172640780558	0.869172640780558	0.75328295534315	1	-	22.6666666666667	0.60524179975777
82080	CTCCCGGTTCAATTCTTCAGTCCGGCTGGTGAACCAGGCTTCAGCATCCTTCCGGTTCTGCTCGGCCATGACCTCATATTGGCTTCGCATGTCACTCAGGATCTTGGCGAGATCGGTGCCCGGAGCGGAATCCACCTCCACACT|GAATCTCCCCTCCTCACAGTTGCCATGTAGACCCCTTGAAGAGGGGAGGGGCCTAGGGAGCCGCACCTTGTCATGTACCATCAATAAA	1	0.537752179758311	1	0.935920242646516	N	N	3.63655728995158	3.53296011761759	3.53296011761759	splitr	9	0.0227272727272727	0.0227272727272727	0	N	0.0227272727272727	N	N	58670	62936	ENSG00000171345	ENSG00000111640	-	-	17	12	39684560	6647537	coding	utr3p	KRT19	GAPDH	39679869	6643093	-	+	0.0227272727272727	39680753	6647432	+	-	Y	-	0.328476626016815	N	SKBR3_13_2_1	4	0	2.5	1	2	1	N	N	0	0	4	1.15061901969998	0.885728310128759	1.15061901969998	0.885728310128759	2	-	3244.25	0.60524179975777
77646	GAGCAGGTGCTTTCTGGGCTGGAGCTTTTTGACCCTTCTGAGCTTTTGGAGCAGGCGCTGCTTTCTGGCCTGTGGCTTTCTGGGCAGGAACCTTCTGGGCTGGAGCCTTTTTACTCGCGGCGGTGATCTTTTTTGCTGGAACTTTAGCAGCAGCAGCAGCAGCAGC|AGCAGCAGCAGCAGCAGCAGCAGCAGCACCTGCCGCAGCAGCAACAGCACCAACAACAGCAGCAACAACAGCAGCAACAGCAGCACAGTAAAGGGCATACATTTCCTGCTTTCACCAATTAACCACTGAATTGCTATTTTTTCCTTTTGGCCAGATAGCTAGGTTTC	23	0.951426227598714	0.410781130913321	0.84520064304131	N	N	2.98354699790121	2.30354122495102	2.30354122495102	splitr	11	0.0602409638554217	0.0602409638554217	0	N	0.831325301204819	N	N	7767	1977	ENSG00000188846	ENSG00000140319	-	+	3	15	40506549	40331389	coding	coding	RPL14	SRP14	40498783	40327891	+	-	0.0602409638554217	40503532	40328624	-	+	Y	-	0.454049911349353	N	SKBR3_13_2_1	352	0.456989247311828	54.1428571428571	1	6	1	N	N	0	0.456989247311828	7	1.15061901969998	1.4651767373158	1.4651767373158	1.15061901969998	2	-	78.4285714285714	0.60524179975777
23239	CACCATAGTTACCACCGCCAAAATTTCCTCCTTCATTGTAACCATCATATCCTCCACCTCCACCATATCCACCACCTTGGTTTCCATATCCTGGTCCACCACCACCATAGCCCCCTCTACTACTATAACCAGGACCACCGCCATAGTTGCCACCATCACCTCCAAATCCATTATATCCACCATCACCTCCTCCATAACTACCTCTGCTGCCACCA|TCACCCTCCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACACTACTCCCTATATCTAACAACGTAAAAATAAAATGACAGTTTGAACACACAAAACCCACCCCATTCCTCC	1	0.47428738458176	0.899266171301115	0.897571427984624	N	N	3.07415014302821	3.16633430462754	3.07415014302821	splitr	7	0	0	0	N	0	N	N	3091	0	ENSG00000170144	ENSG00000225630	-	-	2	1	178086111	566063	coding	intron	HNRNPA3	RP5-857K21.8	178077291	565020	+	+	0	178081607	565873	-	-	Y	-	1	N	SKBR3_13_2_1	20	0.172972972972973	9.75	4	8	1	N	N	0.172972972972973	0	8	1.5313994147086	1.05128500361077	1.5313994147086	1.05128500361077	1	-	0	0.60524179975777
2492	CCCATCACTGGCCTCCAGGATTTCATCAAACCTCCGAACCCCCTCATGATTCTCGATTTTGCTGATAATCTTGATGTTCTTTCCCTTCTCTCCCAG|TCCTAGCCGCTGGCATCACTATACTACTAACAGACCGTAACCTCAACACCACCTTCTTCGACCCAGCCGGAGGAGGAGACCCCATTCTATACCAAC	1	0.350448464919845	0.205558172728075	0.155228020814782	N	N	3.1206375678214	3.67017866861376	3.1206375678214	splitr	10	0.104166666666667	0.0729166666666666	0	N	0.104166666666667	N	N	21606	0	ENSG00000067225	ENSG00000237973	-	-	15	1	72524163	567996	coding	intron	PKM2	RP5-857K21.6	72491370	566454	-	+	0.104166666666667	72501026	567055	+	-	Y	-	1	N	SKBR3_13_2_1	4	0	2.5	2	4	1	N	N	0	0	4	1.00161799556617	0.869172640780558	1.00161799556617	0.869172640780558	3	-	0	0.60524179975777
136629	ATCCAATACAGGGGCATAGCCGGCGCTTATTTGGCCTGGATGGTTCAGGATAATCACCTGAGCAGTGAAGCCAGCTGCTTCCATTGGTGGGTCATTTTTGCTGTCACCAGCAACGTTGCCACGACG|AACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAA	2	1	0.14642513198438	0.165868294288181	N	N	3.49744043328497	3.31017123986951	3.31017123986951	splitr	0	0.10655737704918	0.0983606557377048	0	N	0.180327868852459	N	N	108743	3	ENSG00000156508	ENSG00000230021	-	-	6	1	74233520	659930	coding	intron	EEF1A1	RP5-857K21.4	74225473	536816	-	-	0.10655737704918	74228145	569322	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	42	0	22.6666666666667	12	6	1	N	N	0	0	6	0.75328295534315	1.14234118502588	1.14234118502588	0.75328295534315	1	-	0	0.60524179975777
124200	GTTTAGTAATGGGGTTTGTGGGGTTTTCTTCTAAGCCTTCTCCTATTTATGGGGGTTTAGTATTGATTGTTAGCGGTGTGGTCGGGTGTGTTATTATTCTGAATTTTGGGGGAGGTTATATGGGTTTAATAGTTTTTTTAATTTATTTAGGGGGAATGATGGTTGTCTTTGGATATACTACAGCGATGGCTATTGAGGAGTATCCTGAGGCATGGGGGTCAGGGGTTGA|GGTAGCGGAGGTGAAATATGCTCGTGTGTCTACGTCTATTCCTACTGTAAATATATGGTGTGCTCACACGATAAACCCTAGGAAGCCAATTGATATCATAGCTCAGA	1	0.470460098137837	0.704121951840997	0.776581847210919	N	Y	3.36551102231762	3.57848902055439	3.36551102231762	splitr	336	1	0.0280373831775701	0	Y	0.0280373831775701	N	N	19641	121749	ENSG00000198695	ENSG00000198804	+	+	MT	MT	14673	7445	coding	coding	MT-ND6	MT-CO1	14149	5904	-	+	0	14414	6830	-	+	N	-	-	N	SKBR3_13_2_1	16	0	8.66666666666667	4	3	1	N	N	0	0	3	1.24167520111508	0.736727285994949	1.24167520111508	0.736727285994949	3	-	-	0.60524179975777
7710	CTCCGAGTTGCTGCTGTCCTCCTCGCCCTCC|CATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTT	3	0.0819678715386806	0.226651492638844	0.404166281443956	N	N	3.00203321050398	3.60426060610801	3.00203321050398	splitr	16	0.387096774193549	0.387096774193549	0	N	0.516129032258064	Y	N	3926	3	ENSG00000188976	ENSG00000230021	-	-	1	1	894689	659930	coding	intron	NOC2L	RP5-857K21.4	879584	536816	-	-	0.387096774193549	880468	568372	+	-	N	-	0.828962371721779	N	SKBR3_13_2_1	6	0.483516483516484	4	2	2	1	N	N	0.483516483516484	0	2	0.75328295534315	0.827783467410055	0.827783467410055	0.75328295534315	1	-	0	0.60524179975777
140363	GCTCCGTCGCCGCCCGCGAGGCCCGCCTTGGCCACGGGCTCTGGAGGCCAGTGCCTCCCGCTCGCCGCCCGCTGCGCTCCTCACCCCTGCCTGCACCATCCTCCCTCCTGAGAGCTCATTCACTCCGCCCCGCCCGCCTCGCCTAG|CCTGGTGTCGCCATGGGCCGCCGCCCCGCCCGTTGTTACCGGTATTGTAAGAACAAGCCGTACCCAAAGTCTCGCTTCTGCCGAGGTGTCCCTGATGCCAAGATTCGCATTTTTGACCTGGGGCGGAAAAAGGCAAAAGTGGATGAGTTTCCGCTCTGTGGCCACATGGTGTCAGATGAATATG	1	0.365664568446417	0.205558172728075	0.155228020814782	N	N	3.28036485108879	3.15526151102993	3.15526151102993	splitr	12	0	0	0	N	0	N	N	83603	0	ENSG00000130600	ENSG00000178464	+	+	11	19	2022700	12754733	intron	upstream	H19	CTD-2192J16.15	2016406	12754089	-	-	0	2017930	12754745	+	+	Y	0.715446407421329	-	N	SKBR3_13_2_1	4	0	3.5	3	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	2230.5	-	0.60524179975777
123621	CCGGAGTACTTGTGGAAGATGGCCACGAGGAGGCCAATGGCCTGATCCAGGGGGCATGCCATGGCTGAGGGCTGGGCTTGGAGCGGTAGGGAGGCGG|CCAACGGCGAGCTAGAGGTGAAGATCCGCGACTGGTACCAGAAGCAGGGGCCTGGGCCCTCCCGCGACTACAGCCACTA	2	0.202771646894377	0.467754455729131	0.686272108117709	N	N	3.16038281718941	3.78208964237274	3.16038281718941	splitr	12	0	0.0506329113924051	0	N	0.177215189873418	N	N	24283	58670	ENSG00000197956	ENSG00000171345	-	+	1	17	153508720	39684560	utr5p	coding	S100A6	KRT19	153507075	39679869	-	-	0	153508438	39684189	+	+	Y	-	0.807997511525299	N	SKBR3_13_2_1	2	0	1.5	1	1	1	N	N	0	0	2	0.827783467410055	0.562892757838837	0.827783467410055	0.562892757838837	1	-	3305	0.60524179975777
139827	TGTTCATTGTGGATGTTAAAGCCAACAAGCACCAGATTAAACAGGCTGTGAAGAAGCTGTATGACATTGATGTGGCCAAGGTCAACACCCTGATTCGGCCTGATGGAGAGAAGAAGGCATATGTTCGACTGGCTCCTGATTACGATGCTTTGGATGTTGCCAACAAAATTGGGATCATCTAAACTGAGTCCAGCTGCCTAATTCTGA|ATATATATATATATCTTTTGTCTCTATCTCTGTCTTCCTAT	5	1	0.369157863776355	0.744012660474033	N	Y	3.62039369541802	2.68685712578963	2.68685712578963	splitr	34	0.341463414634146	0.341463414634146	0	N	0.536585365853658	N	N	23502	0	ENSG00000198242	ENSG00000184319	+	+	17	22	27051377	51239737	utr3p	upstream	RPL23A	AC002055.4	27046411	51195376	+	+	0.512195121951219	27050924	35849806	+	+	Y	-	-	N	SKBR3_13_2_1	1305	0.528301886792453	590.666666666667	110	3	1	N	N	0	0.528301886792453	3	0.629115435231642	0.438725237727329	0.629115435231642	0.438725237727329	3	-	-	0.60524179975777
137723	AGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTT|GGGTCGCTTTGCTGTACATCGTATTACACCTGAGGAGGCCAAGTACAAGTTGTGCAAAGTGAGAAAGATCTTTGTGGGCACAAAAGGAATCCCTCATCTGGTGACTCATGATGCCCGCACCATCCGCTACCCCGATCCCCTCATCAAGGTGAATGATACCATTCAGATTGATTT	1	0.256540803678956	1	0.935920242646516	N	N	3.51360402781852	3.75065819442972	3.51360402781852	splitr	15	0	0	0	N	0.0692307692307692	N	N	108743	21038	ENSG00000156508	ENSG00000198034	+	-	6	X	74233520	71497150	coding	coding	EEF1A1	RPS4X	74225473	71475529	-	-	0	74227755	71494945	-	+	Y	-	-	N	SKBR3_13_2_1	24	0	18	12	2	1	Y	N	0	0	2	0.720171616646748	0.711893781972647	0.720171616646748	0.711893781972647	2	-	-	0.60524179975777
91735	GGTGCCACGATGCGGTGAGCGATGTCAGACAGCTCCTTCTTCTGCTCCGGGGTCAGTGCTGGATATTGGTAGGGCATGGTGCTGGTAGTAG|CAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCAGTTGAAGA	3	0.0160465230054181	0.468195265123822	0.766610165601278	N	N	3.30016202126533	3.48064499656564	3.30016202126533	splitr	12	0.0535714285714287	0.0535714285714287	0	N	0.0714285714285715	N	N	37145	0	ENSG00000149925	ENSG00000251948	-	+	16	19	30081741	24184165	coding	intron	ALDOA	AC092279.1	30064444	24184075	+	-	0.0535714285714287	30078562	24184126	-	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.8	1	4	1	N	N	0	1	5	1.04300716893667	0.620837600557541	1.04300716893667	0.620837600557541	2	-	0	0.60524179975777
139738	CTGCTGGCTCTGTCCTGGCTCTTGGCCCGAGGAAAAAAAAAAAAAAA|GAAATGAAAAATCAGTGGCTCAAGTATTCTGTGTCATGAGGGGTGGGCTGGGGTACCTGGGCCCAGCCCAGGAGATGTCCTCTCCATCTGGAGGGGCCAGCTCAAAGAGGCTGGAATTTGGCAGATGGCTTCGGTTTGGGGGCTAGGGAAGGTTGGCAACCAGGTAGCAGGCTCGGAGAAGTTATTTGATCTTCTGGGCCCATTTCATGTCATCTGCCCGAGGCTTCT	5	0.885594410479535	0.414263412500737	0.793809624211707	N	Y	2.88004311152306	3.34359427943881	2.88004311152306	splitr	21	0.425531914893617	0.425531914893617	0.333333333333333	N	0.48936170212766	N	N	183	1241	ENSG00000185347	ENSG00000240849	+	+	14	20	105965585	48770335	coding	utr3p	C14orf80	TMEM189	105953536	48697663	+	-	0.425531914893617	105958594	48741414	+	-	Y	-	-	N	SKBR3_13_2_1	67	0	44	6	3	1	N	N	0	0	3	0.44700307240143	0.90228397947696	0.90228397947696	0.44700307240143	2	-	-	0.60524179975777
67408	CTGAGAAAGCCGTGCCGGAGCTGCCCCTGTGCCTGCTACTAAATGAATTGCGGTGGGTGAGGTGGCAGCTGGGGACCCCTCTGTCCTGTGTCCCCTGCCATGTCCCTGTCTGACCCAGGCCTGGGGTACCACCCCACGTGCTGGACCCTACGCTGGCCACCCCTGTGCTCCCTCCCTGCCCTCTTGCTCTTTCTGCCTGGAACGGGCCCATAACCCCCCAGCCTTGCGCAGTCTCGGCTCCCCCCGAGAAGATGTCACCTTTGCTAACTCTCCTGCCCCCATCCTGCCCCTCTGCTGGGAGGGTGTCTGCTTC|TCCATGCCATCACTGCCACCCAACGGGAAGCTCACTGGCATGGCCTTCCGTGTCCCCACTGCCAACGTGTCAGTGGTGGACCTGACCTGCCGTCTAGAAAAACCTGCCAAATATGATGACATCAAGAAGGTGGTGAAGCAGGCGTCGGAGGGCCCCCTCAAGGGCATCCTGGGCTACACTGGGGAGTCCCTGCCACACTCAGTCCCCCACCACACTGAATCTCCCCT	1	5.93417918021636e-12	0.375556752806067	0.399915574091196	N	N	3.00190987072374	3.37548038812845	3.00190987072374	splitr	3	0.0132158590308369	0.0132158590308369	0	N	0.0132158590308369	N	N	83603	62936	ENSG00000130600	ENSG00000111640	-	-	11	12	2022700	6647537	intron	coding	H19	GAPDH	2016406	6643093	-	+	0.0132158590308369	2018549	6646757	+	-	Y	-	-	N	SKBR3_13_2_1	3	0	2.5	2	2	2	N	N	0	0	2	0.430447403053228	0.827783467410055	0.827783467410055	0.430447403053228	2	-	-	0.60524179975777
78627	GTCCACTCCTGTGAGTAGGGCATTCCTGTCTCCTCGTAGCCCCACAGTTCGATGGTGATGGTCTGCGTGGGCAGCGACTTGACATGCCAGGTCAGGCTGAGGTTGCCTGAGGTGTTGGCGGTGCCGTAGTATTGCCAACGCGTCTCGTTCAC|CCACTCGCTCCACCTTCTCCACCAACTACCGGTCCCTGG	2	0.0858475883823683	0.14642513198438	0.165868294288181	N	N	3.67952553980864	3.25770467341602	3.25770467341602	splitr	26	0.41025641025641	0.41025641025641	0	N	0.41025641025641	N	N	18054	31732	ENSG00000099994	ENSG00000111057	-	-	22	12	24585078	53346684	coding	coding	SUSD2	KRT18	24577227	53342655	+	+	0.41025641025641	24580145	53342968	-	-	Y	-	-	N	SKBR3_13_2_1	25	0	13	1	1	1	N	N	0	0	2	0.827783467410055	0.480114411097832	0.827783467410055	0.480114411097832	1	-	-	0.60524179975777
118737	TCCGCATGATGAAACTTCGGCTCACTCCTTGGCGCCTGCCTGATCCTCC|TAATCACCACCCAACAATGACTAATCAAACTAACCTCAAAACAAATGATAACCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGG	1	1	0.205558172728075	0.155228020814782	N	N	3.38396202342278	2.96997456167094	2.96997456167094	splitr	11	0.0204081632653064	0.0204081632653064	0	N	0.183673469387755	Y	N	37049	38194	ENSG00000198727	ENSG00000198899	+	-	MT	MT	15887	9207	coding	coding	MT-CYB	MT-ATP6	14747	8527	+	+	0.0204081632653064	14876	8651	+	-	N	0.934747796145319	-	N	SKBR3_13_2_1	3	0	2.5	2	2	3	Y	N	0	0	2	0.471836576423731	0.637393269905742	0.637393269905742	0.471836576423731	3	3299	-	0.60524179975777
137593	CCTTGGCCTTCGGCTGCCCGCCGGGCGGCGGCGGCGGGGGCTGCCCTGGCGGGGGCGGCGGCGGC|CGCGGCGCACGGACCTCACCGTGCTGGTGGCCCACAACGATGACCCCACCGACCAGATGTTTGTGTTCTTT	1	0.0360141933837055	0.390564714822603	0.421349522516249	N	N	2.06232427403673	3.34888341946764	2.06232427403673	splitr	11	0.0923076923076923	0.0923076923076923	0	N	0.430769230769231	N	N	1002	1713	ENSG00000169991	ENSG00000099817	+	-	1	19	19283180	1095391	coding	coding	IFFO2	POLR2E	19230774	1086578	-	-	0.0923076923076923	19282731	1093977	-	+	Y	-	-	N	SKBR3_13_2_1	2	0.9	1.5	1	1	1	N	N	0.9	0	2	0.413891733705027	0.827783467410055	0.827783467410055	0.413891733705027	1	-	-	0.60524179975777
141188	TCAAACCTTTATGAGAAGCATAGCTGTTTTGTTTAAAAAAAAAAAAAAAAGA|AATAGGAAGGCGAGAGAGCAATCGAGAGGACGCGAGGTCTGGAGAAACCAGCAGCACCAAAAAAGAGGACGCTAGAGATTGCAGTAAGATCGGGTCTTTATCAGAAATGTTATCGCTTGTCAGGACCTCAGTCTCCGCGCATTACGTCAGTTTCAAGACACCAACACTATTAATATCAAAGGAGCCTTCGCGGAGGAAAG	3	0.990669415545057	0.808929210062517	0.955249021598247	N	N	2.68007606534769	3.29797209054617	2.68007606534769	splitr	28	0.461538461538461	0	1	N	0	N	N	0	6019	ENSG00000238909	ENSG00000104447	+	-	12	8	103632253	116821899	upstream	utr5p	AC068643.1	TRPS1	103632176	116420724	-	-	0.461538461538461	103634979	116681058	+	-	Y	-	3.1972254276693	N	SKBR3_13_2_1	122	0	91.3333333333333	30	3	1	N	N	0	0	3	0.44700307240143	0.985062326217965	0.985062326217965	0.44700307240143	1	-	25	0.60524179975777
139905	CTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACAGCCCCAGTCAAACTCCCCACCTGGCACTG|ACATGTTGCCAAGCTCCGCCTCCAGCTTCAGTTTCTCCTAGCCCAGAGTCTCCAGCTGCCGCCTAAGGTTGTTGATGTAGCTCTTGAACATGTTGTCCATG	1	0.151187511277554	0.205558172728075	0.155228020814782	N	N	3.24425317736376	3.50016892023405	3.24425317736376	splitr	3	1.11022302462516e-16	0	0	N	0.0693069306930693	N	N	0	138	ENSG00000162669	ENSG00000168944	+	-	1	5	91870426	122759286	intron	intron	HFM1	CEP120	91726323	122680579	-	-	1.11022302462516e-16	91853140	122737533	+	-	Y	1	1.21176927801009	N	SKBR3_13_2_1	25	1	19.5	14	2	1	N	N	1	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	0	3	0.60524179975777
22180	AGGAGTCATAGTGAACAATAAAGGCGAGATGAAAGGTTCTGCCATTACAGGACCAGTAGCAAAGGAGTGTGCAGACTTGTGGCCCCGGATTGCATCCAATGCTGGCAGCATTGCATGATTCTCCAGTATATTTG|AAAAAAAAAAAAAAAAACTAAACATGCAACTACCATACATCCTACCA	3	0.361022535448337	0.672179231214042	0.908925693435289	N	N	3.50272957331379	2.41598384969821	2.41598384969821	splitr	28	0.446808510638298	0.48936170212766	0	N	0.51063829787234	N	N	4838	0	ENSG00000125691	ENSG00000153930	+	-	17	17	37010064	54560007	utr3p	intron	RPL23	ANKFN1	37004118	54230836	-	+	0.446808510638298	37006369	54466370	-	-	N	-	1	Y	SKBR3_13_2_1	80	1	36.6666666666667	10	3	1	N	N	0	1	3	0.894006144802859	0.422169568379128	0.894006144802859	0.422169568379128	1	-	0	0.60524179975777
139996	GTTCTTTTGTTTTTTGTTGTTGTTGTTGTTGTTGTTTTGTTTTGTTTTTTTTTTTTTTTT|TTGGCTTGACTCAGGATTTAAAAACTGGAACGGTGAAGGTGACAGCAGTCGGTTGGAGCGAGCATCCCCCAAAGTTCACAATGTGGCCGAGGACTTTGATTGCACATTGTTGTTTTTTTAATAGTCATTCCAAATATGAGAT	4	0.525604192486025	0.592534894166156	0.810283835747011	N	N	1.41689993992464	3.49744043328497	1.41689993992464	splitr	60	0.616666666666667	0.616666666666667	0	N	0.666666666666667	N	N	1098	30285	ENSG00000128487	ENSG00000075624	+	-	17	7	20222339	5603415	utr3p	utr3p	SPECC1	ACTB	19912614	5566782	+	-	0.616666666666667	20140644	5567256	+	+	Y	-	-	N	SKBR3_13_2_1	28	0.566037735849057	16.5	5	2	1	N	N	0.566037735849057	0	2	0.438725237727329	0.827783467410055	0.827783467410055	0.438725237727329	2	-	-	0.60524179975777
130886	ATTTATTTGGGGGGAATGATGGTTGTTTTTGGATATACTACAGCGGTGGCTATTGAGGAGTATCCTGAGGCATGGGGGTCAGGGGTTGAGGTCTTGGTAAGTGTTTTAGTGGGGTTGGTGATGGAAGTAGGATT|GGTGCTTGATGGTGGAGGCCATCTCCTGGGCCCCCTGGCGGCCATCGTGGCTAACTAGGTACTGCTGGGCTGGAAGGTGGTTGTCGTACGCTGGGAGGGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGTACCTGGCTTTCCCCCGCAAGCGGATGAACACCAACCCTTCCCGAGGTCCCTACCACTTCCCGGCCCCCAGCC	1	0.00833161262538407	0.205558172728075	0.155228020814782	N	N	2.9584377597569	3.26294691975352	2.9584377597569	splitr	7	0.00746268656716442	0	0	N	0.00746268656716442	N	N	0	9	ENSG00000249119	ENSG00000162894	+	-	5	1	134260334	207096592	intron	intron	MTND6P4	FAIM3	134259813	207077731	+	-	0.00746268656716442	134260117	207080984	+	-	Y	1	2.02062868213109	N	SKBR3_13_2_1	30	0	22.5	15	2	1	N	N	0	0	2	0.504947915120133	0.670504608602144	0.670504608602144	0.504947915120133	1	0	0.5	0.60524179975777
139387	TTCTTCAGGTAGGCCAGCTCTTCCTTCAGGCCTTCGATCTGCATCTCCAGGTCGGTCCTGGCCAGGGTCAGCTCATCCAGCACCCTGCGCAGGCCGTTGATGTCGGCCTCCACGCTCATGCGCAGAGCCTGTTCCGTCTCAAACTTGGTTCGGAAGTCATCTGCAGCCAGACGGGCATTGTCGATCTGCAGGACAATCCTGGAGTTCTCAATGGTGGCACCAAGAATC|TGGATGGCAGCCATGCCAGCTCCTCTCAGTTCCATTGGCATGGGTTTCTTCTCCCTGATATGTCCACCCTGACCCGCTCAGGCTGGGTCAGCATTCCCACCCCCACCCACTTGCCCAGCACTTACCACAGCTCTGTCTCCCCATCTAGACTTGGAGCTTCTGTATCTAGCCCCAGGG	5	0.0487687213245933	0.713331449201005	0.402874838687458	N	Y	3.67952553980864	3.43568515508231	3.43568515508231	splitr	405	1	0.00564971751412424	0	Y	0.0508474576271185	N	N	58670	31	ENSG00000171345	ENSG00000232938	-	-	17	17	39684560	81188573	coding	upstream	KRT19	AC139099.1	39679869	81174666	-	+	0	39684173	39693225	+	-	N	-	-	N	SKBR3_13_2_1	4	0	2	1	4	3	N	N	0	0	7	1.13406335035178	1.07611850763307	1.13406335035178	1.07611850763307	1	-	-	0.60524179975777
99064	GGGCATGGTGCTGGTAGTAGCAAGTTCCTGGCACAGGAGAGGGGCGGGTGTGCAGGGTGCGGCGG|TACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAA	1	0.788889046631574	0.163782765099475	0.102428735043176	N	N	3.13846607431061	3.68105312311849	3.13846607431061	splitr	1	0.0153846153846152	0	0	N	0.184615384615385	N	N	37145	0	ENSG00000149925	ENSG00000162669	-	+	16	1	30081741	91870426	utr5p	intron	ALDOA	HFM1	30064444	91726323	+	-	0.0153846153846152	30077211	91853109	-	+	Y	-	1	N	SKBR3_13_2_1	1	1	1	1	0	2	N	N	0	1	2	0.703615947298547	0.538059253816536	0.703615947298547	0.538059253816536	1	-	0	0.60524179975777
121230	GCCTCCGGACTCTGGAAATAAATATTGAAAGAAACGGCATCAAGTGTTATGGTTGAGTGATGGCACGCAGCGGGCCCCAGAAACCTCTCAGGGGAGCGTCGCTGTGTC|GGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGT	1	0.814164307171395	0.375556752806067	0.399915574091196	N	N	3.36447795254773	3.16935896602371	3.16935896602371	splitr	16	0.151515151515151	0.151515151515151	0	N	0.181818181818182	N	N	36789	0	ENSG00000167658	ENSG00000162669	+	+	19	1	3985461	91870426	coding	intron	EEF2	HFM1	3972316	91726323	-	-	0.151515151515151	3976458	91853144	+	+	Y	1.16129267973776	1	N	SKBR3_13_2_1	2	1	1.33333333333333	1	1	1	N	N	0	1	3	0.844339136758256	0.662226773928044	0.844339136758256	0.662226773928044	2	668.333333333333	0	0.60524179975777
109589	CCTGACTCCCCTCAGCCATAGAAGGCCCCACCCCAGTCTCAGCCCTACTCCACTCAAGCACTATAGTTGTAGCAGGAATCTTCTTACTCATCCGCTTCCACCCCCTAGCAGAAAATAGCCCACTAA|TCCTCATCACCCAACTAAAAATATTAAACACAAACTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCC	1	1	1	0.935920242646516	N	N	3.32320511986986	2.82192140896338	2.82192140896338	splitr	9	0.0396825396825398	0.0396825396825398	0	N	0.0714285714285714	Y	N	54817	3466	ENSG00000198786	ENSG00000228253	+	-	MT	MT	14148	8572	coding	coding	MT-ND5	J01415.25	12337	8366	+	+	0.0396825396825398	13153	8427	+	-	N	-	-	N	SKBR3_13_2_1	8	0	6	4	2	4	Y	N	0	0	2	0.620837600557541	0.794672128713653	0.794672128713653	0.620837600557541	2	-	-	0.60524179975777
112834	ATCACGTCCTCCGTCACCAGGTTCTTGGAGTAATCCACCAGGATATGCCCATGGTTGGTGTTGAGGGTCAAGCTGAAGTGGTTGAAGCGGTCCTTGTTGGCATCGAAGAGGCGGCGCAGGTTCAGCTCGGAGCGGTGCTCGCGGTACCATTGCTGCAGCTTCTGGAACTGGGGGTCCCGGGTGAGAGCGGCC|CCAGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCAGTTGAAGATGGGTCACTC	808	0.96986908066308	0.0277049845162603	0.10455093342124	N	N	3.38127338926705	3.53974633573272	3.38127338926705	splitr	1	0	0	0	Y	0.0108695652173914	N	N	11003	0	ENSG00000105220	ENSG00000251948	-	+	19	19	34893318	24184165	coding	intron	GPI	AC092279.1	34855645	24184075	+	-	0	34856174	24184152	-	+	N	-	1	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	0	1	2	0.827783467410055	0.44700307240143	0.827783467410055	0.44700307240143	3	-	0	0.60524179975777
79129	GGCGTGGTGGCGGGCGCTTGTAGTCCCAGCTACTCGGGAGGCTGAGGTAGGAGAATGGCTTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCT|AAAAAAAAAAAAAAAAAGTGTAAGCCTGGAAGTAAATTGCTAGCTTCAT	1	0.457463809245613	0.899266171301115	0.897571427984624	N	Y	3.47080361183081	2.62163221165043	2.62163221165043	splitr	190	0.510204081632653	0.448979591836735	0	N	0.469387755102041	N	N	604	0	ENSG00000169756	ENSG00000228114	+	+	2	4	109303702	191010176	utr3p	upstream	LIMS1	DUX4L3	109150857	191008560	+	+	0.530612244897959	109303230	19129050	+	+	Y	-	-	N	SKBR3_13_2_1	1248	1	899.5	551	2	1	N	N	1	0	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	2	-	-	0.60524179975777
133687	CCTGCCTGATGCAGTCGATGTAGTAGGCAGCCAGGCTGTGGATGCTGTCAAGGGGCGCAGCTCGGGTGCACTGCAGGCCATAGGTGGGGATGCTGAGCCGGGAGGCCAGGCTGTGGAACACGGTGGTGGAGCCCTCGATTGGGTGCACCAGGAACAGGGGCCGCTCCGAGCTCTGCACGGAGTTGAGCCGCATCAGGGTGGGGCCCTCCGGGTTCACCAGCAGGGAGCGCAGGTTCAGCTGAGTCTGCTGCTGGGCCAGACCATCCTCCTTGGGCGTGGGGCATGCCAGC|AGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAA	1	0.0099308969087879	0.254583648908217	0.223418152789081	N	N	3.39231567764112	3.42680229220385	3.39231567764112	splitr	6	1.11022302462516e-16	1.11022302462516e-16	0	N	1.11022302462516e-16	N	N	94538	0	ENSG00000169710	ENSG00000252318	-	+	17	2	80056106	133038738	coding	intron	FASN	AC097532.1	80036215	133038647	-	-	1.11022302462516e-16	80038797	133038722	+	+	Y	-	1	N	SKBR3_13_2_1	2	1	2	2	3	2	N	N	0	1	3	0.90228397947696	0.45528090707553	0.90228397947696	0.45528090707553	2	-	0	0.60524179975777
140215	CCAGTAGGCAAAATAAAATGACAGGCATGCTAGTTTTTTTTTTTTTTTTTTT|CCAATAAAAAGACCATTAACTTAAAGTGGTGTTAAATGCTTTGTAAAGCTGAGATCTAAATGGGGACAAGGCAGGTGGAGGGGAGGCCAGTGTACATGTAAATGCCCACAGCCCAGCATTGGGTTTCCCTCCCAAGGCCCCAGCACCAACCTCTGAGCCCAAGACCTTGCCTGAAAACAAGCAGATACCGATTGCTTCATCCTATTTATGGACATGTAGGTCTAGTTGCATTTTCACTG	5	1	0.80651551095101	0.874431436609912	N	Y	2.76903722645797	3.39640391403072	2.76903722645797	splitr	26	0.442307692307692	0.442307692307692	0	N	0.480769230769231	N	N	202	9025	ENSG00000164124	ENSG00000198668	+	-	4	14	159176563	90874617	utr3p	utr3p	TMEM144	CALM1	159122756	90863327	+	+	0.442307692307692	159175606	90871930	+	-	Y	-	2.67744978314686	N	SKBR3_13_2_1	9	0.461538461538462	6	3	2	1	N	N	0.461538461538462	0	2	0.430447403053228	0.827783467410055	0.827783467410055	0.430447403053228	2	-	89.5	0.60524179975777
139272	TGCTGAAGCGGCTGCTGAGCGATGGGTTGGGAACCCCAGTTCTGTTGGTTGTTGGTCTGACGACGCTTGGAATCAGGCTGGTTGTACCCATCTGCCTTTCTCTTGCCTCCTACATTGCCCCCACGAT|CCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCA	1	0.47981448704376	0.205558172728075	0.155228020814782	N	N	3.21744852204025	3.54872248456702	3.21744852204025	splitr	15	0	0	0	N	0	Y	N	3237	3	ENSG00000125944	ENSG00000230021	-	-	1	1	23670829	659930	coding	intron	HNRNPR	RP5-857K21.4	23630264	536816	-	-	0	23637158	569117	+	-	N	-	0.828962371721779	N	SKBR3_13_2_1	3	0	3	3	3	1	N	N	0	0	3	0.670504608602144	0.45528090707553	0.670504608602144	0.45528090707553	2	-	0	0.60524179975777
125759	GTGGTGGTGGGTTCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGAATTGTATGAACCTGGGAGGCAGAGGTTGCAGTGAACTGAGATCACACCACTGTACTCCAGTTGAGGCGACAGAGTGAGACCCAGTCTC|AAAAAAAAAAAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	2	0.310689151653693	0.935695919090345	0.96241881209261	N	Y	3.50529022639353	1.62672529568926	1.62672529568926	splitr	189	0.66	0.56	1	N	0.5	N	N	1344	8	ENSG00000184992	ENSG00000248124	+	-	12	16	125515684	21831716	utr3p	upstream	BRI3BP	AC092375.1	125478246	21812126	+	-	0.62	125514077	21833343	+	-	Y	-	-	N	SKBR3_13_2_1	595	1	318.5	42	2	1	N	N	1	0.784313725490196	2	0.827783467410055	0.422169568379128	0.827783467410055	0.422169568379128	2	-	-	0.60524179975777
141735	GGAACACATCCACAAGCTGAAGGCAGACAAGGCCCGCAAGAAGCTCCTGGCTGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGAAATAAAACCTCCCACTTTGTCTGTACATACTGGCCTCTGTGATTACA|CTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGACTTGGCGGAATCAGCGGGGAAAGAAGACTCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACGTGAGAG	1	0.87589452313036	0.390564714822603	0.421349522516249	N	N	3.40169305405954	3.51679652308403	3.40169305405954	splitr	3	1.11022302462516e-16	1.11022302462516e-16	0.333333333333333	N	0.0168067226890757	N	N	129759	0	ENSG00000108298	ENSG00000226958	+	-	17	X	37360980	108297792	utr3p	intron	RPL19	RN28S1	37356536	108297361	+	-	1.11022302462516e-16	37360943	108297529	+	-	Y	-	1	N	SKBR3_13_2_1	28	1	16	8	3	1	N	N	0	1	3	0.836061302084155	1.18373035839638	1.18373035839638	0.836061302084155	0	-	0	0.60524179975777
61043	ACTAAAAATACAAAAATTAACAGCAGAGCGAGACTCTGTCTCAAAAAAAAAA|AAAAAAAGGAATTTGCCCCTGGCCCGATTCTCCTGCCTCAGCCTCTTGAGTAGCTCGGACTACAGGCGTGCACCACCATGACCAGCTAATTTTTGTATTTTTAGTTGAGAGGGAGTTTCACCATGTTGGCCAGGATGGTCACGATCTCTTGACCTCGTGATCAGCCTGCCTCAGCC	2	0.652261869951164	0.686645868634774	0.871265487878886	N	Y	3.19702885724776	3.19343513439813	3.19343513439813	splitr	228	0.807692307692308	0	0.5	N	0	N	N	254	23502	ENSG00000168434	ENSG00000198242	+	-	16	17	23464501	27051377	utr3p	intron	COG7	RPL23A	23399814	27046411	-	+	0.807692307692308	23399954	27049275	-	-	Y	-	0.377846444377266	N	SKBR3_13_2_1	232	0.961538461538462	124.5	17	2	1	N	N	0.696428571428571	0.961538461538462	2	0.463558741749631	0.827783467410055	0.827783467410055	0.463558741749631	2	-	4969	0.60524179975777
117073	GCACCAATAGGATCCTCCCGAATCAACCCTGACCCCTCTCCTTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAACCACCACCCCATCATACTCTTTCACCCACAGCACCAATCCTACCTCCATCGCT|GTTCATTATAGCTACTCTCATAACCCTCAACACCCACTCCCTCTTAGCCAATATTGTGCCTATTGCCATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGCCCTACTAGTCTCAATCTCCAACACATATGGCCTAGACTACGTACATAACCTAAAC	1	1	0.704121951840997	0.776581847210919	N	N	3.20145276137604	3.27209090245715	3.20145276137604	splitr	6	0.0434782608695652	0.0434782608695652	0	N	0.0797101449275363	Y	N	19641	8764	ENSG00000198695	ENSG00000212907	+	-	MT	MT	14673	10766	coding	coding	MT-ND6	MT-ND4L	14149	10470	-	+	0.0434782608695652	14386	10589	+	-	N	1.15012104632563	-	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	5062.5	-	0.60524179975777
136918	CTGACAATGAGGTAGACGAAGAAGAGGAAGAAG|ATTAAGGAAAAGTACATCGATCAAGAAGAGCTCAACAAAACAAAGCCCATCTGGACCAGAAATCCCGACGATATTACTAATGAGGAGTACGGAGAATTCTATAAGAGCTTG	2	0.00394758255817777	0.332952788415832	0.5	N	N	3.08558984597375	3.3446273492087	3.08558984597375	splitr	16	0.454545454545455	0.454545454545455	0	N	0.636363636363636	N	N	14698	26619	ENSG00000187514	ENSG00000080824	+	-	2	14	232578251	102606086	coding	coding	PTMA	HSP90AA1	232571605	102547073	+	-	0.454545454545455	232576657	102551161	+	+	Y	-	-	N	SKBR3_13_2_1	10	0.471698113207547	7	3	3	1	Y	N	0.471698113207547	0.335570469798658	3	0.877450475454658	1.03472933426257	1.03472933426257	0.877450475454658	4	-	-	0.60524179975777
24574	GCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGA|GGATCACGAGGTCAGGAGATGGAGACCATCTTGGCCAACATGGTGAAATGTTGTCTCTACTAAAAACACAAAAATTAGCTGGGCGTGGTGGCGCTTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAAAATCACTTGAACCAGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGTGCCACTGCACTCCAGCCCGGGCAACAGAATGAGACTCT	1	0.0194088978113578	0.704121951840997	0.776581847210919	N	Y	3.45144752203174	3.61889661733171	3.45144752203174	splitr	365	0.843537414965986	0.54421768707483	1	N	0.687074829931973	N	N	12	419	ENSG00000197291	ENSG00000156531	+	+	17	X	40913275	133562820	utr3p	intron	AC100793.1	PHF6	40905951	133507283	-	+	0	40906025	133536266	-	+	Y	-	2.47521041526583	N	SKBR3_13_2_1	1218	1	717	216	2	1	N	N	1	1	2	0.827783467410055	0.538059253816536	0.827783467410055	0.538059253816536	1	-	12.5	0.60524179975777
138825	CAGCGTCAAAGGTGGAGGAGTGGGTGTCGCTGTTGAAGTCAGAGGAGACCACCTGGTGCTCAGTGTAGCCCAGGATGCCCTTGAGGGGGCCCTCCGACGCCTGCTTCACC|CAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCTATA	1	1	0.447538936456759	0.5	N	N	3.36191729946799	3.48656597878024	3.36191729946799	splitr	4	0.0363636363636364	0.0181818181818183	0	N	0.154545454545454	N	N	62936	3	ENSG00000111640	ENSG00000230021	-	-	12	1	6647537	659930	coding	intron	GAPDH	RP5-857K21.4	6643093	536816	+	-	0.0363636363636364	6647007	569364	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	6	0	4	2	2	1	N	N	0	0	2	0.488392245771932	0.769838624691351	0.769838624691351	0.488392245771932	2	-	0	0.60524179975777
56702	GCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCC|TGCCATGAGCCCTACAAACAACTAACTTACCACTAATAGTCACATCGTCCCTCTTATTAATCATCATCCTAGCCCTAAGTCTGGCCTACGAATGATTATAAAAAGGGTTAGACTGAGCCGAATTGGTATATAGTTCAAACAAAACGAATGATTTCGACTCATTAAATTATGATAATCATATTTACCAAATGCCTCTCATTTACATAAATATTATACTAGAATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCTGATATCCTCCCTACTATGCCTAGAAGGAATAATACTATCACTATTCATTATAGCCACTCTCATAACCCTCAACACCCACT	1	8.09508457513587e-09	1	0.935920242646516	N	N	3.23527702852946	3.37655331069169	3.23527702852946	splitr	5	0.023529411764706	0	0	N	0	N	N	83603	31	ENSG00000130600	ENSG00000132570	+	+	11	5	2022700	134343649	intron	intron	H19	PCBD2	2016406	134240596	-	+	0.023529411764706	2018989	134264204	+	+	Y	3.20438210445699	1.2575464834446	N	SKBR3_13_2_1	2	0	2	2	12	3	N	N	0	0	12	1.63073343079781	1.28306437448558	1.63073343079781	1.28306437448558	2	900.333333333333	0.166666666666667	0.60524179975777
95585	CATCCCCTTATGAGCGGGCACAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATC|AGCCAACGCCACTTATCCAGTGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATAACATTCACAGCCACAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACACCCTAGGCTCACTAAACATTCTACTACTCACTCTCACT	2	0.000318510057768876	0.258666488296237	0.373143407944048	N	Y	3.26360926716282	3.59847695253922	3.26360926716282	splitr	436	1	1.11022302462516e-16	0	Y	0.0472440944881892	N	N	38194	93473	ENSG00000198899	ENSG00000198886	+	-	MT	MT	9207	12137	coding	coding	MT-ATP6	MT-ND4	8527	10760	+	+	0	8967	10997	+	-	N	-	-	N	SKBR3_13_2_1	4	0	3	2	2	3	Y	N	0	0	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	1	-	-	0.60524179975777
97656	GATGAATGCCTGGCTCCCCCTTCTTTCCAGCCCTAGCTCAGGCCCATCGTCCCCAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTGGTTGCCC|CTCAGTCCCCCACCACACTGAATCTCCCCTCCTCACAGTTGCCATGTAGACCCCTTGAAGAGGGGAGGGGCCTAGGGAGCCGCACCTTGTCATGTACCATCAATAAAG	2	0.796550103535549	0.196734923242299	0.258789252325421	N	N	3.24740581983591	3.08039780491342	3.08039780491342	splitr	3	0.0277777777777777	0.0277777777777777	0	N	0.101851851851852	N	N	83603	62936	ENSG00000130600	ENSG00000111640	-	-	11	12	2022700	6647537	intron	utr3p	H19	GAPDH	2016406	6643093	-	+	0.0277777777777777	2019007	6647413	+	-	Y	-	0.316881894104192	N	SKBR3_13_2_1	24	0	4.64285714285714	1	13	2	N	N	0	0	14	1.25823087046328	1.27478653981148	1.27478653981148	1.25823087046328	2	-	1006.35714285714	0.60524179975777
136225	CGGGGGAAACAGAGTCGTGGAGGCTTTGAATCTCTCAGAAAAAAGGAAAGACAGGAAAGCTCAGAAACAAAGAGACAGAAGGATGAAAAAGAAGAAGAGGGAGGTGGTGGGG|GGAATGACAACTTCGGTCGTGGAGGAAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAGCCATGGTGGTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGTAATGATGGAAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAACAATCAGTCTTCAAATTTT	1	1	0.254583648908217	0.223418152789081	N	N	2.64396858151927	3.54400240599166	2.64396858151927	splitr	13	0.107142857142857	0.0892857142857143	0	N	0.0892857142857143	N	N	83603	0	ENSG00000130600	ENSG00000197332	-	+	11	19	2022700	11797382	intron	intron	H19	ZNF833P	2016406	11750591	-	+	0.107142857142857	2016843	11777211	+	+	Y	-	1	N	SKBR3_13_2_1	41	0.752688172043011	28	9	3	1	N	N	0	0.752688172043011	3	0.836061302084155	1.24167520111508	1.24167520111508	0.836061302084155	1	-	0	0.60524179975777
141512	CTTCTTGGCCTTCTTCTCCGCGTACTGCCGTAGCCGCTCCTCCCGCAGCTGTGCCGCCTCCTTG|TCCTCCTCCTCTTCCTCCCCA	2	0.00190956929505153	0.174603456520587	0.217484245625152	N	N	3.10968340772996	1.97437216598846	1.97437216598846	splitr	0	0.523809523809524	0.523809523809524	0	N	0.809523809523809	N	N	6439	0	ENSG00000104529	ENSG00000197744	-	+	8	5	144681711	118309817	coding	intron	EEF1D	CTB-161M19.3	144661867	118309491	-	+	0.523809523809524	144662784	118309687	+	+	Y	-	1	N	SKBR3_13_2_1	8	0.692307692307692	7	6	2	1	N	N	0	0.692307692307692	2	0.827783467410055	0.645671104579843	0.827783467410055	0.645671104579843	1	-	0	0.60524179975777
20853	CCTACTCACCTGCCGGTTCTGAATCTTTATCCTCACCAGCCAGCTTCTGGCTGTCCATCCCTCTCTCCGACTGGGCAGGGCCCTCTCGGGGAG|ACCTCTTCACAGGGCGATCCAGAAATCCTCATCCGAGAACATGGCCAGAGCCCGGGCCGCTCCCCGACCTCCAACCGCCAGAGCGATCACAGCCGCCCCCCGCACGGGGGGGCTTAGGGGGGCCAAGAACGGTAAATCCAGGTCGGAGTGGCCACCCTCCCCCCACAAAAAAACAGCAAGAAGCCAAAGAGGGGTTCT	3	0.499902573113691	0.250730182331237	0.451731126833041	Y	Y	3.03954912775862	3.41103992525442	3.03954912775862	splitr	291	0	0	0	Y	1.11022302462516e-16	N	N	2327	5	ENSG00000167548	ENSG00000167550	+	-	12	12	49449107	49463775	upstream	downstream	MLL2	RHEBL1	49415361	49458468	-	-	0	49449142	49453394	+	-	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	1	N	Y	0	0	2	0.579448427187038	0.769838624691351	0.769838624691351	0.579448427187038	2	-	-	0.60524179975777
137300	GCGAGCGGGGGCGCGGGTGGCGCGGCGGGACGCGAGCGGCGAGCCGGAGCGCGGAGCCCGGCTCCCGCACCATGGAGGAGGACGACAGCTAC|GTCCAATATCAGATGGAAATGATGCGGAGCCTTCGCCATGTAAACATTGATCATCTTCACGTGGGCTGGTATCAGTCCACATACTATGGCTCATTCGTTACCCGGGCACTCCTGGACTCTCAGTTTAGTTACCAGCATGCCATTGAAGAATCTGTCGTTCTCATTTATGATCCCATAAAAACTGCCCAAGGATCTCTCTCACTAAAG	1	1	0.526775457519482	0.600084425908804	N	N	3.38656252929588	3.6491271616355	3.38656252929588	splitr	2	0	0	0	N	0.0652173913043477	N	Y	554	11199	ENSG00000108669	ENSG00000147677	+	-	17	8	76778379	117779164	coding	coding	CYTH1	EIF3H	76670130	117654369	-	-	0	76778284	117671219	-	+	Y	-	-	N	SKBR3_13_2_1	1	0	1	1	0	3	N	N	0	0	10	0.745005120669049	1.29134220915969	1.29134220915969	0.745005120669049	4	-	-	0.60524179975777
131558	ACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTGGTTGCCCC|ACCTTTTTCCTTCTCCCCAATTACTCCCCTGAATCAATGTACAAATCAGCACCCACATCCCCTTTCTTGACAAATGATTTTTCTAGAGAACTATGTTCTTCCCTGACTTTAGGGAAGGTGAATGTGTTCCCGTCCTCCCGCAGTCAGAAAGGAGACTCTGCCTCCCTCCTCCTCACTGAGTGCCTCATCCTAC	1	0.154873326257949	0.205558172728075	0.155228020814782	N	N	3.18718747251292	3.1474422231449	3.1474422231449	splitr	4	0.0272108843537416	0.0272108843537416	0	N	0.095238095238095	N	N	83603	8913	ENSG00000130600	ENSG00000109062	+	-	11	17	2022700	72765498	intron	coding	H19	SLC9A3R1	2016406	72744763	-	+	0.0272108843537416	2019008	72764847	+	-	Y	6.03916052289248	0.989032479870199	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	3	1.15061901969998	0.927117483499261	1.15061901969998	0.927117483499261	1	2874.66666666667	276.333333333333	0.60524179975777
134042	TCTGCAATGGGCAGGGATGTATGGAATAGAAAGAGCTTCCCTGCACACTCAGCAGCCTTCAGAGCCTCCATTCCAGCCTGGATAACTGGTACAAATACTGTCTCTGTTTCCCTTGTGTCTGCAAACATTTCTGGAATCTGATCCAATAAGCTGGTGATAACTGCCCGAGACTCATTGACGTTGACCA|TCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGGTTGAAGCCCCCATTCGTATAATAATTACATCACA	1	0.0125319436984963	0.447538936456759	0.5	N	N	3.76592604783919	3.65657572715995	3.65657572715995	splitr	4	0	0	0	N	0	N	N	5228	3	ENSG00000176986	ENSG00000230021	-	-	10	1	75531919	659930	coding	intron	SEC24C	RP5-857K21.4	75504120	536816	+	-	0	75526263	568426	-	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	3	0	3	3	2	1	N	N	0	0	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	1	-	0	0.60524179975777
141774	GGCAGTGATGGCATGGACTGTGGTCATGAGTCCTTCCACGATACCAAAGTTGTCATGGATGACCTTGGCCAGGGGTGCTAAGCAGTTGGTGGTGCAGGAGGCATTGCTGATGATCTTGAGGCTGTTGTCATACTTCTCATGGTTCACACCCATGACGAACATGGGGGCATCAGCAGAGGGGGCAG|AGATGATGAGGATGATGATGTCGATACCAAGAAGCAGAAGACCGACAAGGATGACTAGAC	1	1	0.20555784636729	0.155228020814782	N	N	3.07147508924161	3.28762265480494	3.07147508924161	splitr	15	0.15	0.15	0	N	0.166666666666667	N	N	62936	0	ENSG00000111640	ENSG00000232063	-	+	12	9	6647537	97123230	coding	intron	GAPDH	RP11-307E17.8	6643093	97094758	+	+	0.15	6646304	97109573	-	+	Y	-	1	N	SKBR3_13_2_1	128	0.0631578947368421	91	64	3	1	N	N	0	0.0631578947368421	3	0.90228397947696	0.786394294039552	0.90228397947696	0.786394294039552	1	-	0	0.60524179975777
91976	CAGCTGATGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCAC|CCCACAATGACATCATCCACAACGAGAACATGAGGCAAGGCCGGGACAAGTACAAGACGCTGCGGCAGATCCGGCAGGGCAACACCAAGCAGCGCATCGACGAGTTCGAGGCCCTGTAACAGCCAGGCCAGGACCAAGGGCAGAGGGGTGCTCATAGCGGGCGCTGCCAGCCCCGCCACGCTTGTGTCTTTAGTGCTCCAAGTCTAGGAACTCCCTCAGATCCCAGTTCCTTTAGAAAGCAGTTACCCAACAGAAACATTCTGGGCTGGGAACCAGGGAGGCGCCC	1	3.9236044063687e-07	0.526775457519482	0.600084425908804	N	N	3.32696667658884	3.29437836769654	3.29437836769654	splitr	4	0	0	0	N	0	N	N	83603	7461	ENSG00000130600	ENSG00000092820	+	+	11	6	2022700	159240444	intron	coding	H19	EZR	2016406	159186773	-	-	0	2018986	159188064	+	+	Y	2.98703083079424	0.731432649896326	N	SKBR3_13_2_1	1	0	1	1	0	1	N	N	0	0	2	0.728449451320848	0.413891733705027	0.728449451320848	0.413891733705027	1	5495.5	222.5	0.60524179975777
134896	GCACTTCCCCCACATCTCTGGCTTCATGTAGGTTGCCAGGTTGGGGTTGTAGTCATAGAGAGAGGCGATGATATTGAACTTGATCTTGACAATGACGCCCTCTCCCAGGTTGTTTTCCGCTGCAATCTGAACCAGCAGTTGCAGCAGCTCAATCTGGGCAGCACGATCAGTTCCCTTCTTGCCTCGTGCCTGTAGGATCTCATTCAGTTTCTTGATAACAACAGCATGGGTGATCTCAGTTCCCTTGGCAAACATTTTTGGCTTCTCCTTAACCAACGGCACTCCGCCCCGGACCC|CTCGCGGGGACACCGGGGGGCGCCGGGGGCCTCCCACTTATTCTACACCTCTCACGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTGATTCCGCCAAGTCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCCTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCTGCCGTTTACCCGCGCTTCATT	18	1.01597390698738e-06	0.0318197919436199	0.0812179343653568	N	N	3.35872480420248	2.91403521254583	2.91403521254583	splitr	13	0	0	0	N	0.00367647058823528	N	N	6971	0	ENSG00000205609	ENSG00000226958	-	+	16	X	28415200	108297792	coding	intron	EIF3CL	RN28S1	28390900	108297361	-	-	0	28403329	108297695	+	+	Y	-	1	N	SKBR3_13_2_1	10	1	8	6	2	1	N	N	0	1	2	0.827783467410055	0.827783467410055	0.827783467410055	0.827783467410055	2	-	0	0.60524179975777
109889	GCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACCTCCA|AATATCTCATCAACAACCGACTAATCACCACCCAACAATGACTAATCAAACTAACCTCAAAACAAATGATAACCATACACAACACTAAAGGACGAACCTGATCTCTTATA	2	0.91811788111445	0.238534101605131	0.336508538426427	N	N	3.09355966598976	3.12332620197713	3.09355966598976	splitr	21	0.0545454545454545	0.0545454545454545	0	N	0.881818181818182	Y	N	54817	38194	ENSG00000198786	ENSG00000198899	+	-	MT	MT	14148	9207	coding	coding	MT-ND5	MT-ATP6	12337	8527	+	+	0.0545454545454545	14059	8630	+	-	N	-	-	N	SKBR3_13_2_1	6	0	3.25	1	3	6	Y	N	0	0	4	0.993340160892066	0.521503584468335	0.993340160892066	0.521503584468335	0	-	-	0.60524179975777
140350	GATCGCTTGCAGCTTGCTAGCTGTGTGGGCTGGGAGGTCTGGTAGGGCTGAGCTTGCAAGAGGATCAACATGCCTTTGGCTAGAGATTTACTACATCCGTCCTTGGAAGAGGAA|AAAAAAAAAAAAAAAAAAAAACGCCCTGTGTGGTGGGGAGTACCTCTAGT	1	0.218556686777496	1	0.935920242646516	N	N	3.71617157986699	2.35837958861744	2.35837958861744	splitr	27	0.4	0.4	0	N	0.42	N	N	217	80	ENSG00000185088	ENSG00000104490	+	-	15	8	63450220	103137135	coding	intron	RPS27L	NCALD	63445539	102698771	-	-	0.4	63448682	102705567	-	+	Y	-	-	N	SKBR3_13_2_1	55	1	29	3	2	1	N	N	0	1	2	0.811227798061854	0.413891733705027	0.811227798061854	0.413891733705027	2	-	-	0.60524179975777
133862	CCAGAGGGTGTGGGCAGGTCCCTGGAGCCGGGGGGGGGGGGGGG|AGCGGGGAGGGGGGAGGCCCTGAGAACAGGAGGCCCTGAGGAGGAGAAGGGCCCAGAGAATGAGGAATTGAGGCACAGAGGCGAGACCCTTGCAAGAGGATAGGGGACTTAGCGGGGTGCAAGGCTCACGCCTGTAATCCCCCCACTTTGGGAGGCTGAAGCGGGCTGATCATTTGAGGCCAGGAGTTGGAGACCAG	1	1	0.254583648908217	0.223418152789081	N	N	2.48610907783345	2.81506483283135	2.48610907783345	splitr	21	0.0681818181818185	0.454545454545455	0	N	0	N	N	6	2061	ENSG00000163884	ENSG00000180921	+	+	3	8	126076285	144815971	utr3p	utr3p	KLF15	FAM83H	126061478	144806103	-	-	0.0681818181818185	126062008	144807375	-	-	Y	-	-	N	SKBR3_13_2_1	18	0.804878048780488	11	4	2	1	N	N	0.5	0.804878048780488	2	0.44700307240143	0.678782443276245	0.678782443276245	0.44700307240143	2	-	-	0.60524179975777
129322	AAGAGGATGATGAGGACGAGGATGACGACGACGACGAAGATGATGAAGATGATGATGATGA|TGAAGAAGGAGAAGGAGAAGAAGATGATGATGATGATGAAGAGGAGGAAGGATTAGAAGATATTGATGAATAAGGGGATGAGGATGAAGGTGAAGAAGATGAAGATAATGATGAAGGGGAGGAAGGAGAGGAGGATGAAGGAGAAGATGACTAAATAGAACACTGATGGATTCCAACCTTCCTTTTTTTAAATTTTCTCCAGTTCCTGGGAG	1	1	0.899266171301115	0.897571427984624	N	N	2.53133336643557	2.4036998785205	2.4036998785205	splitr	0	0.0163934426229508	0.0163934426229508	0	N	0.0163934426229508	N	N	7868	0	ENSG00000115053	ENSG00000240489	+	-	2	3	232348352	155705965	coding	intron	NCL	RP11-111F10.2	232318242	155705093	-	+	0.0819672131147539	232325415	155705812	-	-	Y	-	1	N	SKBR3_13_2_1	6	0.77027027027027	4	2	2	1	N	N	0.77027027027027	0.380952380952381	2	0.612559765883441	0.827783467410055	0.827783467410055	0.612559765883441	1	-	0	0.60524179975777
141178	ATTATAGCCATCCCCAAATCCACGTCCACTGCCATATCCATCAGATCCTCCTCTAAAGTTA|CTTCCTAGTCCTGTACGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCTTTACCATCAAATCAATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGGCGGACTAATCTTCAACTCCTACATACT	1	1	0.899266171301115	0.897571427984624	N	N	3.56335849579072	3.35719722089263	3.35719722089263	splitr	13	0	0	0	N	0	N	N	13407	3	ENSG00000122566	ENSG00000230021	-	-	7	1	26241149	659930	coding	intron	HNRNPA2B1	RP5-857K21.4	26229547	536816	-	-	0	26236040	568241	+	-	Y	-	0.828962371721779	N	SKBR3_13_2_1	2	0	2	2	3	3	N	N	0	0	3	1.01817366491437	1.24167520111508	1.24167520111508	1.01817366491437	2	-	0	0.60524179975777
56705	TGTCGCCCTGTCTGCACGATGCCTGGGCGCCTACTCCACACTCCTCACTGGCCTCAGGCCCCACCAGCCCTGCCTCGAGCTAGCCCCTCCACCCGTCATCACTCCTGCCAGACTCCAGATGTCCAAGGTGCTCCTTGGCTCCCACAAGCTCTCCTCCAGCACCCCATCTTCCCCTGGTTGCCCCTCGGTTCCCCACTTCCCCAGTTTCCCCCGTTACCCCCC|TAACGACCCCCCTCCTAATACTAACTACCTGACTCCTGCCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAATGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTAT	1	0.785024857285754	0.526775457519482	0.600084425908804	N	N	2.7476590398091	3.03545154379922	2.7476590398091	splitr	20	0.0563380281690141	0.0563380281690141	0	N	0.0563380281690141	N	N	83603	31	ENSG00000130600	ENSG00000132570	+	+	11	5	2022700	134343649	intron	intron	H19	PCBD2	2016406	134240596	-	+	0.0563380281690141	2019046	134263545	+	+	Y	140.476651873066	1.2575464834446	N	SKBR3_13_2_1	3	0	2.66666666666667	2	6	3	N	N	0	0	6	1.4403432332935	1.01817366491437	1.4403432332935	1.01817366491437	2	115	0.333333333333333	0.60524179975777
141059	AACTGGGGAAGTGGGGAACCGAGGGGCAACCAGGGGAAGATGGGGTGCTGGAGGAGAGCTTGTGGGAGCCAAGGAGCACCTTGGACATCTGGAGTCTGGCAGGAGTGATGACGGGTGGAGGGGCTAGCTCGAGGCAGGGCTGGTGGGGCCTGA|ATCCCGTTCATCCATTCATGCGCGTCACTAATTAGATGACA	1	0.184229590710448	0.209527252024466	0.160545729398276	N	N	3.06104171511436	3.64656650855576	3.06104171511436	splitr	2	0	0	0	N	0.0731707317073172	N	N	83603	0	ENSG00000130600	ENSG00000252967	-	+	11	7	2022700	68527662	intron	upstream	H19	AC093693.2	2016406	68527589	-	+	0	2018878	68527559	-	+	Y	1.45577615144376	-	N	SKBR3_13_2_1	5	1	5	5	2	1	N	N	0	1	2	0.827783467410055	0.645671104579843	0.827783467410055	0.645671104579843	1	7661	-	0.60524179975777
134548	GAATAGGTCACGGCGGCCTTTTTTTTTTTAGTTTAACTTTTCCTTTTTTGCTGTCTAGTCATCCTCGTCGGTCTTCTGCTTCTTGGTATCGACATCGTCATCCTCATCATCTTCAGCTGCCCGCTTGCCCGTAGCTGACTCAGCTTCCTCATCTTCATC|TCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCATCATCACCCTCCTTAACCTCTACTTCTACCTGCGCCTAATCTACTCCACCTCAATCACACTACTCCCTATATCTAACAACGTAAAAATAAAATGACAGTTTGAACACACAAAACCCACCCCAT	2	0.0831001888611359	0.302388701630595	0.449626899543942	N	N	3.44296588673741	3.10550704305773	3.10550704305773	splitr	17	2.22044604925031e-16	0	0	N	0.00628930817610063	N	N	14698	0	ENSG00000187514	ENSG00000225630	-	-	2	1	232578251	566063	coding	intron	PTMA	RP5-857K21.8	232571605	565020	+	+	2.22044604925031e-16	232577170	565751	-	-	Y	-	1	N	SKBR3_13_2_1	16	0	9.66666666666667	2	6	1	N	N	0	0	6	1.33273138253019	0.935395318173362	1.33273138253019	0.935395318173362	2	-	0	0.60524179975777
91212	CAACGGCCTGCACGATCCCTCATCCACCTACATCAGGCAACTGGAGAGCAAAGTGAGGCTGCTGGAGGGTGACAAGCTCCTCGCAC|AGACCCATCCTCATGCCAACAAACTACCCTTGAAGGATTCTTTCACTTACGAGGACTACAGGTGGGCAGTCTCTTCTGTTATGACGAGGCAAAACCAAATTCCCACAGAGGATGGTTCCCGCGTGACCCTGGCTCTGATTCCTTTATGGGATATGTGTAACCACACCAACGGCCTGATCACTACTGGTTACAACC	6	1	0.805314160568972	0.689729940015595	Y	N	3.43784458057793	3.50000108636471	3.43784458057793	splitr	3	0	0.0116279069767442	0	Y	0.0116279069767442	N	Y	287	440	ENSG00000205476	ENSG00000183576	+	-	14	14	100070727	99947216	coding	coding	CCDC85C	SETD3	99977603	99864083	-	-	0	100002352	99880271	-	+	N	-	-	N	SKBR3_13_2_1	1	0	1	1	0	2	Y	Y	0	0	3	0.645671104579843	0.90228397947696	0.90228397947696	0.645671104579843	4	-	-	0.60524179975777
135725	TCTGAAGTAGTCGGTTGGTCATGAACTTTCTAGTGCGGATAGTTACGGTGTCGTTCATGATGGCGATCTAT|CTTCAAGACACCCAAAGAGGCTACTGAGGGCACCTACATTGACAAGAAATGCCCCTTCACTGGTGATGTCTCCATTCGAGGGCGGATCCTCTCTGGCGTGGTGACCAAGATGAAGACGCAGAGGACCACTGTCATCCGCCGAGACTACCTGCACTACATCCGCAAGTACAACCACTTCGAGAAGCACCACAAGAA	3	1	0.951795713797723	0.642019534134658	N	N	3.63825270713077	3.44359772892318	3.44359772892318	splitr	20	2.22044604925031e-16	0	0	N	0	N	N	25185	0	ENSG00000138326	ENSG00000232888	-	-	10	12	79816570	133402772	utr5p	intron	RPS24	RPS11P5	79793518	133402287	+	+	2.22044604925031e-16	79793647	133402415	-	-	Y	-	1	N	SKBR3_13_2_1	3	0	2.75	2	4	1	N	N	0	0	4	0.645671104579843	0.985062326217965	0.985062326217965	0.645671104579843	2	-	0	0.60524179975777
110340	CGCTTAAATTCATCCAACACAAAGGTACTCTTGGGCAGGTGAGCGAAGGGGTCCTTGGCCTTGGGCTCAGCAGCCAGCGCCTGCTCACATTCATCCATCTCCTCCTCAGGAGCAGGGGCAGCCGCCTTTTTCTCCTCCTTCCGCTCAGCCTGGGGCTTCTGCTTCTCTTCCCGTGAACCCTTCTCTTTCCGTGGTGTG|ATTCCGTCCTGCGCGGTTGTTCTCTGGAGCAGCGTTCTTTTATCTCCGTCCGCCTTCTCTCCTACCTAAGTGCGTGCCGCCACCCGATGGAAGATTCGATGGACATGGACATGAGCCCCCT	2	0.414403001072419	0.258666488296237	0.373143407944048	N	N	3.0961203190695	3.45823374014688	3.0961203190695	splitr	14	0	0	0	N	0.0413223140495868	N	N	7063	14119	ENSG00000255508	ENSG00000181163	-	-	11	5	62359003	170838141	utr3p	utr5p	RP11-864I4.1	NPM1	62327075	170814120	-	+	0	62334448	170814867	+	-	Y	-	0.00605898139027505	N	SKBR3_13_2_1	12	0	8	4	2	1	N	N	0	0	2	0.827783467410055	0.728449451320848	0.827783467410055	0.728449451320848	1	-	36	0.60524179975777
128263	CCCGCTTTGTGTCCTCGTCCTCCTCGGGGGCCTACGGCGGCGGCTACGGCGGCGTCCTGACCGCGTCCGACGGGCTGCTGGCGGGCAACGAGAAGCTAACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGCGGCCAACGGCGAGCTAGAGATTCTTGGTGCCACCATTGAGAACTCCAGGATTGTCCTGCAGATCGACAA|CTGCCCCCCCCCCCGCCCCCCAGCCACCACTCCCAAACTCCCCAGCCATTTCTGCA	1	0.549316987523204	0.311204357582937	0.306030290211129	N	N	3.72146071989581	2.46778605780428	2.46778605780428	splitr	6	0.0892857142857143	0.0892857142857143	0	N	0.107142857142857	N	N	58670	427	ENSG00000171345	ENSG00000185596	+	+	17	15	39684560	102516768	coding	upstream	KRT19	WASH1	39679869	102501356	-	+	0	39681476	94708896	-	+	Y	-	-	N	SKBR3_13_2_1	2	0.54	1.33333333333333	1	1	1	N	N	0	0.54	3	0.728449451320848	0.413891733705027	0.728449451320848	0.413891733705027	1	-	-	0.60524179975777
137244	GGATCTCCCATGTTCATTGCTCCTCCGCCACCCATTCGCATGTCTCTTTCCCGTG|CCCATAAAAATAAAAAACTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCACTTCATTCATTGCCCCCACAATCCTAGGC	1	0.0746351488733827	0.261533274614987	0.233421673643755	N	N	3.19553177916145	2.72663803805438	2.72663803805438	splitr	1	0.0181818181818182	0	0	N	0.0909090909090909	Y	N	2945	3	ENSG00000116560	ENSG00000230021	-	-	1	1	35658749	659930	coding	intron	SFPQ	RP5-857K21.4	35641979	536816	-	-	0.0181818181818182	35653575	569035	+	-	N	-	0.828962371721779	N	SKBR3_13_2_1	3	0	2.5	2	2	1	N	N	0	0	2	0.463558741749631	0.827783467410055	0.827783467410055	0.463558741749631	3	-	0	0.60524179975777
136465	TGCCCCCAGCTGTCCCTCTTAATCATGGC|AAGCCAACGCCACTTATCCAATGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATGACATTCACAGCCATAGAACTAATCATATTTTATATCTTCTTCGAAAC	3	0.144894855282744	0.304103290313703	0.548268873166959	N	N	3.30033698359367	3.52208566311286	3.30033698359367	splitr	0	0.310344827586207	0.206896551724138	0	N	0.379310344827586	N	N	1	31	ENSG00000256642	ENSG00000132570	-	+	16	5	33962503	134343649	upstream	intron	NCRNA00273	PCBD2	33961052	134240596	-	+	0.310344827586207	33963406	134263490	-	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	4	1	3.5	3	2	1	N	N	1	0	2	0.513225749794234	0.827783467410055	0.827783467410055	0.513225749794234	3	-	1	0.60524179975777
23960	AACTGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACC|TGGGGGGCGGGGGCGGGGGAAGGCAGAGAAACAAAAATCTTATTCAGA	1	0.0332330159187843	0.321839855309698	0.321669634186996	N	N	3.5010341561346	2.776856514343	2.776856514343	splitr	4	0	0	0	N	0.395833333333333	N	N	0	0	ENSG00000251948	ENSG00000255512	+	-	19	11	24184165	134945793	intron	downstream	AC092279.1	AP005135.2	24184075	134931675	-	-	0.0833333333333335	24184149	91252628	+	-	Y	1	-	N	SKBR3_13_2_1	6	1	4	2	2	1	N	N	1	1	2	0.430447403053228	0.422169568379128	0.430447403053228	0.422169568379128	1	0	-	0.60524179975777
111132	CATCTTCAACTGGAACCCTTCTCCACTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCTGGGACAG|AGTAGGAGGGCCGCTGCGGTGAGTCTTGAAGCCCAGGGCTGGGCCCGGGCAGAGCCGCCGCAGGTGCAGATGTTGGTGGTAGTAGCACATATTCTAAAGAGAACTTCAAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGGACATGGGTCATTCG	1	0.836395228829137	0.899266171301115	0.897571427984624	N	N	3.54296933622177	3.38809011260573	3.38809011260573	splitr	0	0	0	0.2	N	1.11022302462516e-16	N	N	0	0	ENSG00000251948	ENSG00000252194	+	+	19	1	24184165	108113552	intron	upstream	AC092279.1	AC114491.2	24184075	108113461	-	-	1.11022302462516e-16	24184157	108113597	+	+	Y	1	-	N	SKBR3_13_2_1	2	1	1.8	1	4	1	N	N	1	1	5	0.538059253816536	0.836061302084155	0.836061302084155	0.538059253816536	2	0	-	0.60524179975777
121423	ACAGCACGGCGAAGCCCTTCAAGCGCACAGAGATCCGCCTGCCTGGGGCCCTGGCCTTGGGTCGCCGGCCCGAGGTAACCTCGCGAGTGCGAGCGCGCGGCCCTG|TAGTCCCAGCTACCTGGGAGGCTGAGGGAGAAGAATCACTTGAACCTGGGAGGTGGAGGCTGCAGTGAGCTGAGATCGTACCACTGCACTCCAGCCTGGGCGACGAACGGC	2	0.918205766724633	0.196734923242299	0.258789252325421	Y	Y	3.25356019576528	3.44615838200292	3.25356019576528	splitr	216	1	0.0380952380952381	0	Y	0.0380952380952381	N	N	192	217	ENSG00000228672	ENSG00000170476	+	-	5	5	138730885	138725770	coding	intron	AC135457.1	RP11-1280I22.1	138727635	138723169	-	-	0	138728502	138724699	-	+	N	-	-	N	SKBR3_13_2_1	82	1	29.6666666666667	1	2	1	N	Y	0	1	3	0.720171616646748	0.918839648825161	0.918839648825161	0.720171616646748	2	-	-	0.60524179975777
91924	TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGA|CGCTCATCAGACCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATGGAAGTCAGAATCCACTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCTGAAAATGGATGGCACTGGAGCATCAGGCCCATACCCGGCCATCGCCAGCAGTCAATGGAATGTGAGTGCCTTAGAGGTCTTGGGGCCGAAACGATCTCAACCTATTCTCAAACTTTAAATGGGCAAG	1	0.00412673149114698	0.12875022366714	0.0640797573534845	N	N	3.82080182197087	3.75744441254485	3.75744441254485	splitr	2	0	0	0.5	N	0	N	N	0	0	ENSG00000212932	ENSG00000252666	+	-	21	19	48111157	36066721	upstream	upstream	RPL23AP4	AD000090.1	48110676	36066627	+	+	1.11022302462516e-16	9827185	36066506	+	-	Y	-	-	N	SKBR3_13_2_1	2	1	2	2	2	1	N	N	1	0.698744769874477	2	0.596004096535239	0.827783467410055	0.827783467410055	0.596004096535239	1	-	-	0.60524179975777
133954	CTCCAGTCCAGCATTCCTCCTTCTTCCCTTGATTGGGTGGGGCCACATGATGGGCAGCCAGGCTCTGGGCTGTCCCACTAGAGCAGGCTGCAAACACAGCCATGTTTCAGTGAGGCGTTGATCTTCTTCCC|ACTGTCCCTACCTACTATCCAGCGAAACCACAGCCAAGGGAACGGACTTGGCGGAATCAGCGGGGAAAGAAGACTCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACGTGAGAG	4	1	0.592534894166156	0.810283835747011	N	N	3.58999531724489	3.47552369040616	3.47552369040616	splitr	20	0.1	0.1	0	N	0.141666666666667	N	N	21606	0	ENSG00000067225	ENSG00000226958	-	-	15	X	72524163	108297792	utr3p	intron	PKM2	RN28S1	72491370	108297361	-	-	0.1	72491867	108297528	+	-	Y	-	1	N	SKBR3_13_2_1	15	1	9.8	5	5	1	N	N	0	1	5	0.943673152847462	1.00989583024027	1.00989583024027	0.943673152847462	1	-	0	0.60524179975777
31337	ATAGCGCCGCCGCCGCGCCCCTCCCCCGCCCCCGCCCCCGCCCCCCCCCCCCGCCTCCCCCGGATTCCGGGCCTGGGACCCGCACCTCGGAAGCGCTCGGGGTTCGTGCGGACCCGGCAGGGCCCGGGCGCCGCCGCCGCGGCAGGGAGCACACACGCGCTCGCGCAAGCAGCTAAATCCATCAAAGCCCCGCGCCCGGCTCCGCGCCGGGGCTCCGCGCCCCTCCCTCGAGCTTGCCCACCCTCCAGTGCCAGCTGCAATCCTGCGGCACCGGGTGGGGAGGGAGGAGGCCGCCGCAG|GTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAAC	250	0.000745343086398216	0.0231587287395443	0.0792579578160557	N	N	3.23739660123173	3.44871903508266	3.23739660123173	splitr	10	0	0	0	N	0	N	N	13	0	ENSG00000197461	ENSG00000252318	+	+	7	2	559933	133038738	coding	intron	PDGFA	AC097532.1	536895	133038647	-	-	2.22044604925031e-16	559810	133038720	+	+	Y	1.32322227747389	1	N	SKBR3_13_2_1	6	1	4	2	2	1	N	N	0.524590163934426	1	2	0.504947915120133	0.480114411097832	0.504947915120133	0.480114411097832	2	0	0	0.60524179975777
138502	GGTTGATCTGCCGCTCAGGAGGAGGCCCACCACGAGGCTGACCTCGGACAATGATGGCGCACCCTGAGAGGACCATCTTGATGATGCCCCGCTGCACGGTGGGGACCGCGGGTCCCCCGGAGGAGCCGCCGC|AGGTGCAGATCTTGGTGGTAGTAGCAAATTTTCAAATGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAACATGGGT	1263	0.539829588595621	0.110132368929645	0.484891997721166	N	N	3.02552203078174	3.42680229220385	3.02552203078174	splitr	10	0	0	0	N	0	N	N	13658	0	ENSG00000197157	ENSG00000252318	-	+	7	2	127732661	133038738	coding	intron	SND1	AC097532.1	127292234	133038647	+	-	0	127292447	133038722	-	+	Y	-	1	N	SKBR3_13_2_1	2	1	1.5	1	1	1	N	N	0	1	2	0.827783467410055	0.480114411097832	0.827783467410055	0.480114411097832	2	-	0	0.60524179975777
137064	AACCCGCGGTGGAGTCCGCGGCGGCGGGGGGGGGGGGGGGGGGGGGGGCGGGGCGGCGCGCGCAGGCGCAGAGGCCGCCAGGTTGGGCCGAGGAGGCGCCCTGCTCCACACCTGATGCAATCAGCCTTCCGGAAACGGGTCCCGCTGCCGCGCTCACCCAGGAAACACTTCCGCGCCCTCCTCTGGCCGCTGAGCTCCCG|AAGGCTTATTCCATCCGGACCGCATCCGCCAGTCGCAGGAGTGCCCGCGACTGAGCCGCCTCCCACCACTCCACTCCTCCAGCCACCACCCACAATCACAAGAAGATTCCCACCCCTGCCTCCCATGCCTGGTCCCAAGA	1	0.0152647093967595	0.375556752806067	0.399915574091196	N	N	3.27039548527796	3.6988816296077	3.27039548527796	splitr	7	0	0	0	N	0	N	N	129	34840	ENSG00000163697	ENSG00000135480	+	-	4	12	41218731	52662180	intron	coding	APBB2	KRT7	40812044	52626954	-	+	0	41218611	52642491	+	-	Y	2.00365673383646	3.22754464830166	N	SKBR3_13_2_1	12	0.549019607843137	10.5	9	2	1	N	N	0.549019607843137	0	2	0.422169568379128	0.521503584468335	0.521503584468335	0.422169568379128	2	0	2356	0.60524179975777
139360	GTATCTTCTGAGCAGCCGGCGCAAAATCCTCATTCTCCTCATCCATGTGACCTTCTCTGGCATTCGGGCATT|TCACATCCATGAAGCAGGAATTGGGGCTCTGCACCAGGCGTTTCTTCTTGTGTTTCCTCTTCTCC	1	0.06949475921708	0.163782765099475	0.102428735043176	N	N	3.38652267650252	3.59784511035345	3.38652267650252	splitr	7	0	0	0	N	0.0923076923076922	N	N	129759	0	ENSG00000108298	ENSG00000234268	-	-	17	11	37360980	116906767	coding	intron	RPL19	AP000936.1	37356536	116906513	+	-	0	37359262	116906662	-	-	Y	0.618252763067681	1	N	SKBR3_13_2_1	30	0	28	26	2	1	N	N	0	0	2	0.44700307240143	0.546337088490636	0.546337088490636	0.44700307240143	2	17340.5	0	0.60524179975777
140436	CCTCCACCCAGGCGCATGGCTCCATGAAGCAAGAGGAGGAGGCAGAGCGCGAGAGATCCCGTCCGCCCCAGCCGCGTCTGGGCCAGGAGAAAAGCAAAACCATATTCCTGCTGCTGTCAGTTTTGATGCACTGAGAAAACTTCAGAGACCTAAGCTTTTTCCAGAGAAGAGAAGCTTTACTGGTGTTCCAGCCCTAA|GAAACCTTTGTTCAACAAAACTGCAGATGCTCTGTTGAATCCACTGGAGATTGTTCTGATACTAAGGACAAGTATCAAACATCTTTCCTGTGAAAAATTCCCTCTCCTAGTACTTTAGTTCTGTGGATCCAAAATTTATAGCATTCTTCTACCACCACAGGGGCTCATATGACATTAACAGA	7	0.00185563290765623	0.804250667023514	0.840356220040761	N	Y	3.48064499656564	3.38552945952599	3.38552945952599	splitr	268	0.89010989010989	0.521978021978022	0	N	0.93956043956044	N	Y	150	18	ENSG00000223482	ENSG00000244733	+	-	10	10	89102369	81436855	intron	intron	RP11-322M19.1	RP11-506M13.3	88963610	81420645	-	+	0	89090649	81429244	-	-	N	-	-	Y	SKBR3_13_2_1	3	0	3	3	2	1	N	N	0	0	2	0.554614923164737	0.827783467410055	0.827783467410055	0.554614923164737	4	-	-	0.60524179975777
126939	CTTTTAAATTGGCTCAGAAAGCAATTTTGTAATTTCAGAGAGTGTTTTGAGCCATGGCCACGTTGTCATTGTGAGTCTATAGCTTGACTCCTTGGAGAACAATATTCATTTGGTTGTGGAGACTGATTTGCTGGGAGAAATCTGTCCTGTTACTTTCTGGTCATCCCAGGTTCTGACTTTTACCAGGGGC|AAAAAAAAAAAAAAAAAGCAAGAGGGAAAACGGCGTTATCGTGAGATGCCT	1	0.732107692179377	0.899266171301115	0.897571427984624	N	N	3.42254622194492	2.62738535999568	2.62738535999568	splitr	27	0	0.450980392156863	0	N	0.529411764705882	N	N	279	634	ENSG00000186918	ENSG00000038532	+	+	8	16	28260218	11276046	utr3p	intron	ZNF395	CLEC16A	28203102	11038345	-	+	0.450980392156863	28203294	11149449	-	+	Y	-	0.596475859235536	N	SKBR3_13_2_1	36	0.94767441860465	23.5	11	2	1	N	N	0.94767441860465	0.8	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	2	-	11.5	0.60524179975777
108914	CACCATTGGCAGCCTAGCATTAGCAGGAATACCTTTCCTCACAGGTTTCTACTCCAAAGACCACATCATCGAAACCGCAAACATATCATACACAAACGCCTGAGCCCTATCTATTACTCTCATCGCTACCTCCCTGACAAGCGCCTATAGCACTCGAATAATTCTTCTCACCCTAACAGGTCAACCTCGCT|TCCCCTAGAAGTCCCACTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAATAGAA	1	1	1	0.935920242646516	N	N	3.56591914887046	3.34103362635907	3.34103362635907	splitr	5	0.0588235294117648	0.0588235294117648	0	N	0.0588235294117648	Y	N	54817	33743	ENSG00000198786	ENSG00000198938	+	-	MT	MT	14148	9990	coding	coding	MT-ND5	MT-CO3	12337	9207	+	+	0.0588235294117648	13645	9581	+	-	N	-	-	N	SKBR3_13_2_1	9	0	6	3	2	3	N	N	0	0	2	0.827783467410055	0.488392245771932	0.827783467410055	0.488392245771932	1	-	-	0.60524179975777
132950	TTTGAGGAATCATATCGACAGGTCATGAAAATGAGACCAAAAGATCTCTGGAAGCGATTAATGATAAAATTTCGTGGAGAAGAAGGCCTTGACTATGGAGGCGTTGCCAGGG|TGATGACAACTCCGTGAGGGTGGAGATTATACATCTCTCATCATTTCAGCAACAAGGAAATAAATTAGTGGCAGAGTAAGGGTGACTTGGTGAGTACATCCAATTGTTGACATAGTTTTGGGTGGGAGAAATTTTGCTATTATATCAACTTCTTAAAATGGTCTAGTGGGATTAACTTTGTTTCAATTCACAGAGATCTCTTGGAAGCGAGGATCCTTTAAAAATCCTGGAATATACACTGCAGTAAAAGAACAAAGCATACCTCAGCCTTAAACGA	10	0.000247589788491406	0.891099579895066	0.86451716728654	N	Y	3.62208911259722	3.66592259835483	3.62208911259722	splitr	389	0.955357142857143	0	0	N	0.875	N	N	211	31	ENSG00000108854	ENSG00000232938	+	-	17	17	62658386	81188573	coding	upstream	SMURF2	AC139099.1	62540735	81174666	-	+	0	62553839	66121533	-	-	N	-	-	Y	SKBR3_13_2_1	10	0	10	10	2	1	N	N	0	0	2	0.703615947298547	0.422169568379128	0.703615947298547	0.422169568379128	1	-	-	0.60524179975777
136949	AGCCTGGGTGACAGAGCGAGACTCCATCTCCCAAAAAAAAAAAAAAAAAAA|CAACAACAAAAAAACTGTCCTCTGAGGAGGCACAGGTGTGACAGATAAGGAACCTGCAGCTCAGATTCAACAGGCACCTGCCAAGTCCACACTCAGGACTGTGACAGCCTCAACAACATGAGGTCCAGACACATTCACTGTGGAAGGCTCTGCCCACGCGAACAAAGCTGTCAGCTCTAGCAAAAGGGACACTGCCTTCTTCCTCCCTCACTTCTCACCTGGTAAGCCCGGGAATCA	4	1	0.330537974952343	0.651968193672452	N	Y	2.60840485449668	3.28296535696188	2.60840485449668	splitr	288	0	0.509803921568627	0	N	0.529411764705882	N	N	0	1336	ENSG00000223256	ENSG00000089685	+	+	9	17	141150148	76221715	upstream	utr3p	U6.928	BIRC5	141150045	76210277	+	+	0	66176254	76220135	+	+	Y	-	1.44294131891194	N	SKBR3_13_2_1	118	0.745098039215686	89.5	61	2	1	N	N	0.745098039215686	0	2	0.422169568379128	0.827783467410055	0.827783467410055	0.422169568379128	1	-	34	0.60524179975777
131185	GCGCTTGCGTGCTTCCTTGGTCTTAGACCTGCGGGCCTCAGCCTGGTCAGCCAGGAGCTTCTTGCGGGCCTTGTCTGCCTTCAGCTTGTGGATGTGTTCCATGAGAATCCGCTTGTTTTTGAACACATTCCCCTTCACCTTCAGGTACAGGCTGTGATACATGTGGCGATCG|ATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGC	1	1	1	0.935920242646516	N	N	3.83593234673454	3.70512929149291	3.70512929149291	splitr	6	0.0135135135135135	0.0675675675675675	0.5	N	0.0675675675675675	N	N	129759	0	ENSG00000108298	ENSG00000162669	-	+	17	1	37360980	91870426	coding	intron	RPL19	HFM1	37356536	91726323	+	-	0.0135135135135135	37359351	91853019	-	+	Y	-	1	N	SKBR3_13_2_1	10	1	9	8	2	2	N	N	0	1	2	0.653948939253943	0.827783467410055	0.827783467410055	0.653948939253943	2	-	0	0.60524179975777
131548	CCAGTGCAAATGACTTAGTGCAAATTAAATTCAGAAGGGACGGGGGAAACAGAGTCGTGGAGGCTTTGAATCTCTCAGAAAAAAGGAAAGACAGGAAAGCTCAGAAACAAAGAGACAGAAGGATGAAAAAGAAGAAGAGGGAGGTGGTGGGGACGGCGTCATCCCGCTGGAGGAGCTCAGCTCTGGGATGATGTGGTGGCTGGTGGTCAACCGTCCGCCGCAGGGGGTGGCCATGAAGAT|ACCGTGAATCTAAGAAGATCGATCGCCACATGTAAGCACACCCTCTTGG	1	0.545923654950605	0.321839855309698	0.321669634186996	N	N	3.47911741325579	3.72079837248651	3.47911741325579	splitr	6	0	0	0	N	0	N	N	83603	129759	ENSG00000130600	ENSG00000108298	+	-	11	17	2022700	37360980	intron	coding	H19	RPL19	2016406	37356536	-	+	0	2016931	37359332	+	-	Y	0.889767318741929	0.706315302677446	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.703615947298547	0.480114411097832	0.703615947298547	0.480114411097832	3	2926	18292.5	0.60524179975777
99332	TAGTAAGTCTGGCTAGGCCTTGTGTTGCCTTTTTTTTTTTTTTTT|AACTTCCTGCCTATACACACGCAGCCATCAGCCCACAAAGACATGACTACCAACGCGGGCCCCTTGCACCCATACTGGCCTCAGCACCTAAGACTGGACAACTTTGTACCTAATGACCGCCCCACCTGGCATATACTGGCTGGCCTCTTCTCTGTCACAGGGGTCTTAGTCG	1	0.518564084005852	0.612610548302747	0.693969709788871	N	N	2.67702089872798	3.35356364524965	2.67702089872798	splitr	16	0.355555555555556	0.355555555555556	0	N	0.622222222222222	N	N	3	971	ENSG00000134245	ENSG00000147155	+	-	1	X	113065288	48387104	utr3p	utr5p	WNT2B	EBP	113009163	48379546	+	+	0.355555555555556	113063949	48382118	+	-	Y	-	-	N	SKBR3_13_2_1	41	0.649122807017544	34.5	28	2	1	N	N	0.649122807017544	0	2	0.471836576423731	0.827783467410055	0.827783467410055	0.471836576423731	2	-	-	0.60524179975777
53558	CGTGCTGGACCCTACGCTGGCCACCCCTGTGCTCCCTCCCTGCCCTCTTGCTCTTTCTGCCTGGAACGGGCCCATAACCCCCCAGCCTTGCGCAGTCTCGGCTCCCCCCGAGAAGATGTCACCTTTGCTAACTCTCC|TACCCCTCACAATCATGGCAAGCCAGCGCCACCTATCCAACGAACCACTATCACGAAAAAAACTCTACCTCTCTATGCTAATCTCCCTCCAAATCTCCTTAATTATAACATTCACAGCCACGGAGCTAATCATATTTTATATCTTCTT	1	0.599572149176471	1	0.935920242646516	N	N	3.55617105009146	3.40165320126619	3.40165320126619	splitr	16	0.0145985401459854	0.0145985401459854	0	N	0.0364963503649635	N	N	83603	0	ENSG00000130600	ENSG00000232177	+	-	11	X	2022700	125607264	intron	intron	H19	RP11-10B2.3	2016406	125606868	-	+	0.0145985401459854	2018509	125607085	+	-	Y	0.835469501515853	1	N	SKBR3_13_2_1	4	0	3.33333333333333	3	3	1	N	N	0	0	3	0.76156079001725	0.794672128713653	0.794672128713653	0.76156079001725	1	2148.33333333333	0	0.60524179975777
69061	CTCAAACTTGGTCTGGTACCAGGCTTCAGCCTCAGCCCGGCTGCATTTGGCCATCTCCTCATACTGCGCCTTGACCTCAGCGATGATGCCGTCCAGGTCCAGGGAGCGACTGTTGTCCATGGACAGCACCACAGATGTGTCGGAGATCTGGGACTGCAGCTCTGTCAACTCCGTCTCATTGAGGGTCCTGAGGAAGTTGATCTCATCATTCAGGGCATCCACCTTGGCCTCCAGCTCCACCTTGCTCATGTAGGCAGCATCCACATCCTTCTTCAGCACCACAAACTCATTCTCAGC|CATAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCCTGGCTATCATCACCCGATGAGGCAACCAACCAGAACGCCTGAACGCAGGTACATACTTCCTATTCTACACCCTAGTAGGCTCCCTCCCCCTACTCATCGCACTAATCTACAC	1	0.0028455291248237	0.375556752806067	0.399915574091196	N	N	3.03589262417669	3.28655907981151	3.03589262417669	splitr	10	2.22044604925031e-16	2.22044604925031e-16	0	N	2.22044604925031e-16	N	N	34840	31	ENSG00000135480	ENSG00000132570	-	+	12	5	52662180	134343649	coding	intron	KRT7	PCBD2	52626954	134240596	+	+	0	52631324	134263391	-	+	Y	-	1.2575464834446	N	SKBR3_13_2_1	8	0	4	2	3	2	N	N	0	0	3	1.24167520111508	1.22511953176688	1.24167520111508	1.22511953176688	2	-	0.666666666666667	0.60524179975777
135216	GTCGGTGTATTCGTAGGTTCAGTACCATTGATGGCCAATTGATTTGATGGTAAAGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGTAGGGATGGGAGGGCGATAAGGACTAGGATGATGGCGGGCAGGATAGTTCAGACGGTTTCTATTTCCTGAGCGTCTGAGATGTTAGTATTAGTTAGTTT|TGTTGTTTTTTTTTTTTTTCTTCTGTGTTCGTCCGCAGTGGCCAAGTTGAATGATGCTGCCCGGGGCTCTGCCAGATCCTGAGACGCTTCCCCTCCCTGCCCCACCCGGGTCCTGTGCT	1	0.606255779003841	0.254583648908217	0.223418152789081	N	N	3.28466077414108	2.61742504602094	2.61742504602094	splitr	6	0.0504201680672268	0.0084033613445378	0	N	0.0252100840336134	Y	N	3	3151	ENSG00000230021	ENSG00000143420	-	+	1	1	659930	150602088	intron	intron	RP5-857K21.4	ENSA	536816	150573327	-	-	0.0504201680672268	568281	150595373	-	+	N	0.828962371721779	1.70307947400971	N	SKBR3_13_2_1	2	0	2	2	2	1	N	N	0	0	2	0.827783467410055	0.430447403053228	0.827783467410055	0.430447403053228	2	0	197.5	0.60524179975777
89693	CAAGCCTTGATGACCTCCCCTTTTCCCAGGTCAAAGGAGAATTTGTCCTTGCGATCCAGACTGGAGTCAAACTTTGTGCCATCTAATAGCCAGCCAGTGTAGTGGACAAAGACTCGGTCCCCAATCATGGGCATCTCTGTACCTGTGCCC|AAATGGTGCCCGCTGTGCCACCTGGTTTCAAGACCCTACCCGCTTCACTGGCACCATGGTGA	2	0.613719197459347	0.0528227949490863	0.0261143544820491	N	N	3.44615838200292	3.50641658211926	3.44615838200292	splitr	16	0	0	0	N	0	N	N	8359	1356	ENSG00000004478	ENSG00000013306	-	+	12	17	2914576	42402238	coding	coding	FKBP4	SLC25A39	2904119	42396993	+	-	0	2906318	42399844	-	+	Y	-	1.2827786922359	N	SKBR3_13_2_1	9	0	5	1	1	1	N	N	0	0	2	0.827783467410055	0.413891733705027	0.827783467410055	0.413891733705027	1	-	90.5	0.60524179975777
30253	GGTGACCAGCGGCGGCGGGGGCACCAGCAGGATGTACTATTCTCGGCGCGGCGTGATCACCGACCAGAACTCGGACGGCTACT|GTGCCCATCCTACTGGATCACAGCTGCCCGGTCACTATTCAGCACATACAGGCACTAAGCAAAGCACAGAACTGGACACTGCAGAGGAAACAAGAACAAAAGTTCCTGCAGCCGCTCAAAATCCAACAA	1	0.286238989745407	0.704121951840997	0.776581847210919	N	N	3.59268395140062	3.63552422018169	3.59268395140062	splitr	2	0	0	0	N	0	N	N	6001	0	ENSG00000096696	ENSG00000219814	+	+	6	6	7586950	171055065	coding	upstream	DSP	XX-C2158C6.2	7541808	171054606	+	+	0	7542317	8210081	+	+	N	0.614068370446485	-	Y	SKBR3_13_2_1	1	0.2109375	1	1	0	2	N	N	0	0.2109375	5	0.488392245771932	0.968506656869764	0.968506656869764	0.488392245771932	1	21.2	-	0.60524179975777
69125	CTTGAAACATGGTCCAAAGGGTCTAACACGTGTGCGAGTCAGGGGCTCGCACGAAAGCCACTGTGGCGCAATGAAGGTGAAGGCTGATGCGCTGGCTGGCTGAGGCGGGATCCTGAGGCCTCTCCAGTTTGCCAAGGGAGCACCACCGTCCACTCTCGCCCACTGTGCTGGGCAGGTGGAGAATGAGCGC|ACGTGTTAGGACCCCAAAGATGGTGAACTGTGCCTGAGGAGGGCGAAGC	1	1	0.205558172728075	0.155228020814782	N	N	3.52105259334297	3.52361324642271	3.52105259334297	splitr	24	0	0	0	N	0	N	N	0	0	ENSG00000251948	ENSG00000242517	-	+	19	8	24184165	56755341	upstream	intron	AC092279.1	AC018607.3	24184075	56755033	-	-	0.346938775510204	24184850	56755320	-	+	Y	-	1	N	SKBR3_13_2_1	1	1	1	1	0	1	N	N	1	0.9	2	0.471836576423731	0.413891733705027	0.471836576423731	0.413891733705027	2	-	0	0.60524179975777
141133	GTTCTCCTCGGTGTTCTCGGTGCCAATGGACTGCAGCCGCTTGGCAATGCTCCCAGTGGACTCATCTGCAGCCAGGATGCCCTTGCCAGGTGCCACGATGCGGTGAGCGATGTCAGACAGCTCCTTCTTCTGCTCCGGGGTCAGTGC|CAGGTGGGGAGTTTGACTGGGGCTGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGG	91	0.575375903705653	0.0649501312124915	0.26631997588262	N	N	3.58849823915857	3.39128260787123	3.39128260787123	splitr	14	0	0	0.142857142857143	N	0.01	N	N	37145	0	ENSG00000149925	ENSG00000162669	-	+	16	1	30081741	91870426	coding	intron	ALDOA	HFM1	30064444	91726323	+	-	0	30078594	91853134	-	+	Y	-	1	N	SKBR3_13_2_1	4	1	2	1	5	2	N	N	0	1	7	1.5313994147086	0.869172640780558	1.5313994147086	0.869172640780558	1	-	0	0.60524179975777
141094	AATCCAATACAGGGGCATAGCCGGCGCTTATTTGGCCTGGATGGTTCAGGATAATCACCTGAGCAGTGAAGCCAGCTGCTTCCATTGGTGGGTCATTTTTGCTGTCACCAGCAACGTTGCCACGACGAACATCCTTGACAGACACATTCTTGACATTGAAGCCCACATTGTCCCCAGGAAGAGCTTCACTCAAAGCTTCA|ATTGGTGGGTCATTATGTGTTGTCGTGCAGGTAGAGGCTTACTAGAAGTGTAAAAACGTAGGCTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATTGTGAAGATGATAAGTGTAGAGGGAAGGTTAATAGTTGATATTGCTAGTGTGGCGCTTCCAATTAGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGGTTAGGCGTACGGCCAGGGCTATTGGTTGAATGAGT	1	6.33745598621336e-05	0.20555784636729	0.155228020814782	N	N	3.42936294528359	3.38908332958227	3.38908332958227	splitr	7	0	0	0	N	0	N	N	108743	3	ENSG00000156508	ENSG00000230021	-	+	6	1	74233520	659930	coding	intron	EEF1A1	RP5-857K21.4	74225473	536816	-	-	0	74228218	569768	+	+	Y	-	0.828962371721779	N	SKBR3_13_2_1	32	0	24	14	4	1	N	N	0	0	4	0.645671104579843	1.34928705187839	1.34928705187839	0.645671104579843	1	-	0	0.60524179975777
26271	GATCGTCCTTAGCCAGTCCAATCTCTACGAGGAACTGGCATATGTTCTTGCGTTGGTCACCCTGTAGCTGAATTACTTCTCCATATTCCGGATGCTCAATTACAGTACCATTGCAGGCAAACTTTTTCTTAAACGCCTTCACTAGTTTCTTTTTATCGTAATCATCAGCGATCCCTTG|GTCACCCTGTAGCTGAATTACTTCTCCATATTCTGGATGCTCAATTACAGTACCATTGCAGGCAAACTTCTTAAACGCCTTCACTGGTTTCTTTTTGGTGTAATCATCAGCGATCCCTTGGACAGTAGTAAGGGCCTTCCTGCCGTT	1	1	0.800133926999915	0.844771979185218	N	N	3.41576000382978	3.68527868815389	3.41576000382978	splitr	0	0.129251700680272	0.17687074829932	1	N	0.183673469387755	N	N	8885	0	ENSG00000173812	ENSG00000213772	-	-	17	2	39848920	9411757	coding	intron	EIF1	RP11-385J23.1	39845137	9411421	+	-	0.129251700680272	39846140	9411497	-	-	Y	-	1	N	SKBR3_13_2_1	3	0	2	1	2	1	N	N	0	0	3	1.15061901969998	0.918839648825161	1.1