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Items 1 - 20 of 162
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1:

The Adaptive Evolution Database (TAED).

Liberles DA, Schreiber DR, Govindarajan S, Chamberlin SG, Benner SA.

Genome Biol. 2001;2(4):PREPRINT0003. Epub 2001 Mar 9.

PMID: 11305934 [PubMed - indexed for MEDLINE]

2:

The adaptive evolution database (TAED).

Liberles DA, Schreiber DR, Govindarajan S, Chamberlin SG, Benner SA.

Genome Biol. 2001;2(8):RESEARCH0028. Epub 2001 Jul 24.

PMID: 11532212 [PubMed - indexed for MEDLINE]

3:

The Adaptive Evolution Database (TAED): a phylogeny based tool for comparative genomics.

Roth C, Betts MJ, Steffansson P, Saelensminde G, Liberles DA.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D495-7.

PMID: 15608245 [PubMed - indexed for MEDLINE]

4:

Vestige: maximum likelihood phylogenetic footprinting.

Wakefield MJ, Maxwell P, Huttley GA.

BMC Bioinformatics. 2005 May 29;6:130.

PMID: 15921531 [PubMed - indexed for MEDLINE]

5:

Pandit: a database of protein and associated nucleotide domains with inferred trees.

Whelan S, de Bakker PI, Goldman N.

Bioinformatics. 2003 Aug 12;19(12):1556-63.

PMID: 12912837 [PubMed - indexed for MEDLINE]

7:

PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees.

Whelan S, de Bakker PI, Quevillon E, Rodriguez N, Goldman N.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D327-31.

PMID: 16381879 [PubMed - indexed for MEDLINE]

8:

Evaluation of whether accelerated protein evolution in chordates has occurred before, after, or simultaneously with gene duplication.

Johnston CR, O'Dushlaine C, Fitzpatrick DA, Edwards RJ, Shields DC.

Mol Biol Evol. 2007 Jan;24(1):315-23. Epub 2006 Oct 25.

PMID: 17065596 [PubMed - indexed for MEDLINE]

9:

Molecular evolution of the human SRPX2 gene that causes brain disorders of the Rolandic and Sylvian speech areas.

Royer B, Soares DC, Barlow PN, Bontrop RE, Roll P, Robaglia-Schlupp A, Blancher A, Levasseur A, Cau P, Pontarotti P, Szepetowski P.

BMC Genet. 2007 Oct 18;8:72.

PMID: 17942002 [PubMed - indexed for MEDLINE]

11:

On the quality of tree-based protein classification.

Lazareva-Ulitsky B, Diemer K, Thomas PD.

Bioinformatics. 2005 May 1;21(9):1876-90. Epub 2005 Jan 12.

PMID: 15647305 [PubMed - indexed for MEDLINE]

12:

Evolution of vertebrate genes related to prion and Shadoo proteins--clues from comparative genomic analysis.

Premzl M, Gready JE, Jermiin LS, Simonic T, Marshall Graves JA.

Mol Biol Evol. 2004 Dec;21(12):2210-31. Epub 2004 Sep 1.

PMID: 15342797 [PubMed - indexed for MEDLINE]

13:

Bayesian coestimation of phylogeny and sequence alignment.

Lunter G, Miklós I, Drummond A, Jensen JL, Hein J.

BMC Bioinformatics. 2005 Apr 1;6:83.

PMID: 15804354 [PubMed - indexed for MEDLINE]

14:

ZPS: visualization of recent adaptive evolution of proteins.

Chattopadhyay S, Dykhuizen DE, Sokurenko EV.

BMC Bioinformatics. 2007 Jun 7;8:187.

PMID: 17555597 [PubMed - indexed for MEDLINE]

15:

A survey of the molecular evolutionary dynamics of twenty-five multigene families from four grass taxa.

Zhang L, Pond SK, Gaut BS.

J Mol Evol. 2001 Feb;52(2):144-56.

PMID: 11231894 [PubMed - indexed for MEDLINE]

16:

Exploring the relationship between sequence similarity and accurate phylogenetic trees.

Cantarel BL, Morrison HG, Pearson W.

Mol Biol Evol. 2006 Nov;23(11):2090-100. Epub 2006 Aug 4.

PMID: 16891377 [PubMed - indexed for MEDLINE]

17:

Adaptive evolution and functional divergence of pepsin gene family.

Carginale V, Trinchella F, Capasso C, Scudiero R, Riggio M, Parisi E.

Gene. 2004 May 26;333:81-90.

PMID: 15177683 [PubMed - indexed for MEDLINE]

18:

Reconstruction of ancestral protein sequences and its applications.

Cai W, Pei J, Grishin NV.

BMC Evol Biol. 2004 Sep 17;4:33.

PMID: 15377393 [PubMed - indexed for MEDLINE]

19:

Mammalian BEX, WEX and GASP genes: coding and non-coding chimaerism sustained by gene conversion events.

Winter EE, Ponting CP.

BMC Evol Biol. 2005 Oct 12;5:54.

PMID: 16221301 [PubMed - indexed for MEDLINE]

20:

Molecular phylogenies and evolution of crt genes in algae.

Chen Q, Jiang JG, Wang F.

Crit Rev Biotechnol. 2007 Apr-Jun;27(2):77-91. Review.

PMID: 17578704 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 162
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