Transcription of the genome: don't read it all at once.

Crossley M.

Genome Biol. 2001;2(4):REPORTS4008. Epub 2001 Apr 4. No abstract available.

PMID: 11305935 [PubMed - indexed for MEDLINE]

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[Studies of regulation of gene expression developed from genomic science]

Nagase T.

Tanpakushitsu Kakusan Koso. 2000 Jun;45(9 Suppl):1645-53. Review. Japanese. No abstract available.

PMID: 10879146 [PubMed - indexed for MEDLINE]

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A genome-wide and nonredundant mouse transcription factor database.

Kanamori M, Konno H, Osato N, Kawai J, Hayashizaki Y, Suzuki H.

Biochem Biophys Res Commun. 2004 Sep 24;322(3):787-93.

PMID: 15336533 [PubMed - indexed for MEDLINE]

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Revealing the structure and dynamics of cis-regulation using heterogeneous, genome-wide, multi-species data.

Shamir R.

Genome Inform. 2004;15(2):300-1. No abstract available.

PMID: 16312049 [PubMed - indexed for MEDLINE]

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Teamed up for transcription.

von Mering C, Bork P.

Nature. 2002 Jun 20;417(6891):797-8. No abstract available.

PMID: 12075329 [PubMed - indexed for MEDLINE]

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Mechanisms of gene regulation in Plasmodium.

Deitsch K, Duraisingh M, Dzikowski R, Gunasekera A, Khan S, Le Roch K, Llinás M, Mair G, McGovern V, Roos D, Shock J, Sims J, Wiegand R, Winzeler E.

Am J Trop Med Hyg. 2007 Aug;77(2):201-8. Review. No abstract available.

PMID: 17690387 [PubMed - indexed for MEDLINE]

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The expanding transcriptome: the genome as the 'Book of Sand'.

Mendes Soares LM, Valcárcel J.

EMBO J. 2006 Mar 8;25(5):923-31. Epub 2006 Mar 2. Review.

PMID: 16511566 [PubMed - indexed for MEDLINE]

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[Orthologue, paralogue and comparative genomics for gene network analysis]

Kawagashira N.

Tanpakushitsu Kakusan Koso. 2004 Dec;49(17 Suppl):2909-15. Review. Japanese. No abstract available.

PMID: 15669275 [PubMed - indexed for MEDLINE]

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[Epigenetic gene regulation by non-coding RNA]

Kageyama Y.

Tanpakushitsu Kakusan Koso. 2004 Dec;49(16):2529-41. Review. Japanese. No abstract available.

PMID: 15609716 [PubMed - indexed for MEDLINE]

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Non-coding RNAs: hope or hype?

Hüttenhofer A, Schattner P, Polacek N.

Trends Genet. 2005 May;21(5):289-97. Review.

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Transcriptional control thrown for a loop.

Fraser P.

Curr Opin Genet Dev. 2006 Oct;16(5):490-5. Epub 2006 Aug 9. Review.

PMID: 16904310 [PubMed - indexed for MEDLINE]

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Integrative genetic analysis of transcription modules: towards filling the gap between genetic loci and inherited traits.

Li H, Chen H, Bao L, Manly KF, Chesler EJ, Lu L, Wang J, Zhou M, Williams RW, Cui Y.

Hum Mol Genet. 2006 Feb 1;15(3):481-92. Epub 2005 Dec 21.

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Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms.

Lapidot M, Pilpel Y.

EMBO Rep. 2006 Dec;7(12):1216-22. Review.

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[Mouse natural antisense RNA]

Kiyosawa H.

Tanpakushitsu Kakusan Koso. 2007 May;52(5):441-8. Review. Japanese. No abstract available.

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The transcriptional regulatory code of eukaryotic cells--insights from genome-wide analysis of chromatin organization and transcription factor binding.

Barrera LO, Ren B.

Curr Opin Cell Biol. 2006 Jun;18(3):291-8. Epub 2006 May 2. Review.

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[Transcription regulation of Hox genes on genome]

Kondo T.

Tanpakushitsu Kakusan Koso. 2005 May;50(6 Suppl):557-62. Review. Japanese. No abstract available.

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An abundance of bidirectional promoters in the human genome.

Trinklein ND, Aldred SF, Hartman SJ, Schroeder DI, Otillar RP, Myers RM.

Genome Res. 2004 Jan;14(1):62-6.

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Noncoding RNA transcripts.

Szymański M, Barciszewska MZ, Zywicki M, Barciszewski J.

J Appl Genet. 2003;44(1):1-19. Review.

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Report on the tenth international workshop on the identification of transcribed sequences 2000. Heidelberg, Germany, October 28-31, 2000.

Korn B, Weissman S, Werner T, Gardiner K.

Cytogenet Cell Genet. 2001;92(1-2):49-58. No abstract available.

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Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity.

Yamashita R, Suzuki Y, Sugano S, Nakai K.

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