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Items 1 - 20 of 212
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1:

A clustering method for repeat analysis in DNA sequences.

Volfovsky N, Haas BJ, Salzberg SL.

Genome Biol. 2001;2(8):RESEARCH0027. Epub 2001 Aug 1.

PMID: 11532211 [PubMed - indexed for MEDLINE]

2:

A draft sequence of the rice genome (Oryza sativa L. ssp. indica).

Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, Cao M, Liu J, Sun J, Tang J, Chen Y, Huang X, Lin W, Ye C, Tong W, Cong L, Geng J, Han Y, Li L, Li W, Hu G, Huang X, Li W, Li J, Liu Z, Li L, Liu J, Qi Q, Liu J, Li L, Li T, Wang X, Lu H, Wu T, Zhu M, Ni P, Han H, Dong W, Ren X, Feng X, Cui P, Li X, Wang H, Xu X, Zhai W, Xu Z, Zhang J, He S, Zhang J, Xu J, Zhang K, Zheng X, Dong J, Zeng W, Tao L, Ye J, Tan J, Ren X, Chen X, He J, Liu D, Tian W, Tian C, Xia H, Bao Q, Li G, Gao H, Cao T, Wang J, Zhao W, Li P, Chen W, Wang X, Zhang Y, Hu J, Wang J, Liu S, Yang J, Zhang G, Xiong Y, Li Z, Mao L, Zhou C, Zhu Z, Chen R, Hao B, Zheng W, Chen S, Guo W, Li G, Liu S, Tao M, Wang J, Zhu L, Yuan L, Yang H.

Science. 2002 Apr 5;296(5565):79-92.

PMID: 11935017 [PubMed - indexed for MEDLINE]

3:

Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals.

Reneker J, Shyu CR.

BMC Bioinformatics. 2005 May 3;6:111.

PMID: 15869708 [PubMed - indexed for MEDLINE]

4:

A BAC end view of the Musa acuminata genome.

Cheung F, Town CD.

BMC Plant Biol. 2007 Jun 11;7:29.

PMID: 17562019 [PubMed - indexed for MEDLINE]

5:

Synteny between Arabidopsis thaliana and rice at the genome level: a tool to identify conservation in the ongoing rice genome sequencing project.

Salse J, PiƩgu B, Cooke R, Delseny M.

Nucleic Acids Res. 2002 Jun 1;30(11):2316-28.

PMID: 12034818 [PubMed - indexed for MEDLINE]

6:

A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).

Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, Moughamer T, Xia Y, Budworth P, Zhong J, Miguel T, Paszkowski U, Zhang S, Colbert M, Sun WL, Chen L, Cooper B, Park S, Wood TC, Mao L, Quail P, Wing R, Dean R, Yu Y, Zharkikh A, Shen R, Sahasrabudhe S, Thomas A, Cannings R, Gutin A, Pruss D, Reid J, Tavtigian S, Mitchell J, Eldredge G, Scholl T, Miller RM, Bhatnagar S, Adey N, Rubano T, Tusneem N, Robinson R, Feldhaus J, Macalma T, Oliphant A, Briggs S.

Science. 2002 Apr 5;296(5565):92-100.

PMID: 11935018 [PubMed - indexed for MEDLINE]

7:

GATA: a graphic alignment tool for comparative sequence analysis.

Nix DA, Eisen MB.

BMC Bioinformatics. 2005 Jan 17;6:9.

PMID: 15655071 [PubMed - indexed for MEDLINE]

8:

The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice.

Vandepoele K, Saeys Y, Simillion C, Raes J, Van De Peer Y.

Genome Res. 2002 Nov;12(11):1792-801.

PMID: 12421767 [PubMed - indexed for MEDLINE]

9:

FORRepeats: detects repeats on entire chromosomes and between genomes.

Lefebvre A, Lecroq T, Dauchel H, Alexandre J.

Bioinformatics. 2003 Feb 12;19(3):319-26.

PMID: 12584116 [PubMed - indexed for MEDLINE]

10:

Genome cluster database. A sequence family analysis platform for Arabidopsis and rice.

Horan K, Lauricha J, Bailey-Serres J, Raikhel N, Girke T.

Plant Physiol. 2005 May;138(1):47-54.

PMID: 15888677 [PubMed - indexed for MEDLINE]

11:

Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis.

Yavatkar AS, Lin Y, Ross J, Fann Y, Brody T, Odenwald WF.

BMC Genomics. 2008 Feb 28;9:106.

PMID: 18307801 [PubMed - indexed for MEDLINE]

12:

PILER: identification and classification of genomic repeats.

Edgar RC, Myers EW.

Bioinformatics. 2005 Jun;21 Suppl 1:i152-8.

PMID: 15961452 [PubMed - indexed for MEDLINE]

13:

Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey.

Swaminathan K, Varala K, Hudson ME.

BMC Genomics. 2007 May 24;8:132.

PMID: 17524145 [PubMed - indexed for MEDLINE]

14:

Specialized microbial databases for inductive exploration of microbial genome sequences.

Fang G, Ho C, Qiu Y, Cubas V, Yu Z, Cabau C, Cheung F, Moszer I, Danchin A.

BMC Genomics. 2005 Feb 7;6(1):14.

PMID: 15698474 [PubMed - indexed for MEDLINE]

15:

De novo repeat classification and fragment assembly.

Pevzner PA, Tang H, Tesler G.

Genome Res. 2004 Sep;14(9):1786-96. Erratum in: Genome Res. 2004 Dec;14(12):2510. Pevzner, Paul A [corrected to Pevzner, Pavel A].

PMID: 15342561 [PubMed - indexed for MEDLINE]

16:

[A new method for EST clustering]

Zhang LD, Yuan DJ, Zhang JW, Wang SP, Zhang QF.

Yi Chuan Xue Bao. 2003 Feb;30(2):147-53. Chinese.

PMID: 12776603 [PubMed - indexed for MEDLINE]

17:

Comparison of rice and Arabidopsis annotation.

Schoof H, Karlowski WM.

Curr Opin Plant Biol. 2003 Apr;6(2):106-12. Review.

PMID: 12667865 [PubMed - indexed for MEDLINE]

18:

Comparative genomics between rice and Arabidopsis shows scant collinearity in gene order.

Liu H, Sachidanandam R, Stein L.

Genome Res. 2001 Dec;11(12):2020-6.

PMID: 11731491 [PubMed - indexed for MEDLINE]

19:

454 sequencing put to the test using the complex genome of barley.

Wicker T, Schlagenhauf E, Graner A, Close TJ, Keller B, Stein N.

BMC Genomics. 2006 Oct 26;7:275.

PMID: 17067373 [PubMed - indexed for MEDLINE]

20:

Large-scale genomic correlations in Arabidopsis thaliana relate to chromosomal structure.

Kendal WS, Suomela BP.

BMC Genomics. 2005 Jun 2;6(1):82.

PMID: 15932642 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 212
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