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1:

Comparison of complete nuclear receptor sets from the human, Caenorhabditis elegans and Drosophila genomes.

Maglich JM, Sluder A, Guan X, Shi Y, McKee DD, Carrick K, Kamdar K, Willson TM, Moore JT.

Genome Biol. 2001;2(8):RESEARCH0029. Epub 2001 Jul 24.

PMID: 11532213 [PubMed - indexed for MEDLINE]

2:

Nuclear receptors in nematodes: themes and variations.

Sluder AE, Maina CV.

Trends Genet. 2001 Apr;17(4):206-13. Review.

PMID: 11275326 [PubMed - indexed for MEDLINE]

3:

The nuclear receptor superfamily has undergone extensive proliferation and diversification in nematodes.

Sluder AE, Mathews SW, Hough D, Yin VP, Maina CV.

Genome Res. 1999 Feb;9(2):103-20.

PMID: 10022975 [PubMed - indexed for MEDLINE]

4:

Comparative analysis of function and interaction of transcription factors in nematodes: extensive conservation of orthology coupled to rapid sequence evolution.

Haerty W, Artieri C, Khezri N, Singh RS, Gupta BP.

BMC Genomics. 2008 Aug 27;9:399.

PMID: 18752680 [PubMed - indexed for MEDLINE]

5:

Whole-genome analysis of animal A- and B-type cyclins.

Nieduszynski CA, Murray J, Carrington M.

Genome Biol. 2002;3(12):RESEARCH0070. Epub 2002 Nov 15.

PMID: 12537559 [PubMed - indexed for MEDLINE]

6:

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.

Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, Griffiths-Jones S, Harris TW, Hillier LW, Kamath R, Kuwabara PE, Mardis ER, Marra MA, Miner TL, Minx P, Mullikin JC, Plumb RW, Rogers J, Schein JE, Sohrmann M, Spieth J, Stajich JE, Wei C, Willey D, Wilson RK, Durbin R, Waterston RH.

PLoS Biol. 2003 Nov;1(2):E45. Epub 2003 Nov 17.

PMID: 14624247 [PubMed - indexed for MEDLINE]

7:

Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes.

Echols N, Harrison P, Balasubramanian S, Luscombe NM, Bertone P, Zhang Z, Gerstein M.

Nucleic Acids Res. 2002 Jun 1;30(11):2515-23.

PMID: 12034841 [PubMed - indexed for MEDLINE]

9:

Molecular phylogeny of the kelch-repeat superfamily reveals an expansion of BTB/kelch proteins in animals.

Prag S, Adams JC.

BMC Bioinformatics. 2003 Sep 17;4:42. Epub 2003 Sep 17.

PMID: 13678422 [PubMed - indexed for MEDLINE]

10:

The Drosophila melanogaster flightless-I gene involved in gastrulation and muscle degeneration encodes gelsolin-like and leucine-rich repeat domains and is conserved in Caenorhabditis elegans and humans.

Campbell HD, Schimansky T, Claudianos C, Ozsarac N, Kasprzak AB, Cotsell JN, Young IG, de Couet HG, Miklos GL.

Proc Natl Acad Sci U S A. 1993 Dec 1;90(23):11386-90.

PMID: 8248259 [PubMed - indexed for MEDLINE]

11:

Cadherin superfamily proteins in Caenorhabditis elegans and Drosophila melanogaster.

Hill E, Broadbent ID, Chothia C, Pettitt J.

J Mol Biol. 2001 Feb 2;305(5):1011-24.

PMID: 11162110 [PubMed - indexed for MEDLINE]

12:

Large-scale taxonomic profiling of eukaryotic model organisms: a comparison of orthologous proteins encoded by the human, fly, nematode, and yeast genomes.

Mushegian AR, Garey JR, Martin J, Liu LX.

Genome Res. 1998 Jun;8(6):590-8.

PMID: 9647634 [PubMed - indexed for MEDLINE]

13:

Functional genomics of ionotropic acetylcholine receptors in Caenorhabditis elegans and Drosophila melanogaster.

Sattelle DB, Culetto E, Grauso M, Raymond V, Franks CJ, Towers P.

Novartis Found Symp. 2002;245:240-57; discussion 257-60, 261-4. Review.

PMID: 12027012 [PubMed - indexed for MEDLINE]

14:

Sampling the genomic pool of protein tyrosine kinase genes using the polymerase chain reaction with genomic DNA.

Oates AC, Wollberg P, Achen MG, Wilks AF.

Biochem Biophys Res Commun. 1998 Aug 28;249(3):660-7.

PMID: 9731193 [PubMed - indexed for MEDLINE]

15:

Evidence suggesting that a fifth of annotated Caenorhabditis elegans genes may be pseudogenes.

Mounsey A, Bauer P, Hope IA.

Genome Res. 2002 May;12(5):770-5.

PMID: 11997343 [PubMed - indexed for MEDLINE]

17:

Mystery of intron gain.

Fedorov A, Roy S, Fedorova L, Gilbert W.

Genome Res. 2003 Oct;13(10):2236-41. Epub 2003 Sep 15.

PMID: 12975308 [PubMed - indexed for MEDLINE]

18:

Multiple ribonuclease H-encoding genes in the Caenorhabditis elegans genome contrasts with the two typical ribonuclease H-encoding genes in the human genome.

Arudchandran A, Cerritelli SM, Bowen NJ, Chen X, Krause MW, Crouch RJ.

Mol Biol Evol. 2002 Nov;19(11):1910-9.

PMID: 12411600 [PubMed - indexed for MEDLINE]

19:

Surfeit locus gene homologs are widely distributed in invertebrate genomes.

Armes N, Fried M.

Mol Cell Biol. 1996 Oct;16(10):5591-6.

PMID: 8816471 [PubMed - indexed for MEDLINE]

20:

Expression and function of members of a divergent nuclear receptor family in Caenorhabditis elegans.

Miyabayashi T, Palfreyman MT, Sluder AE, Slack F, Sengupta P.

Dev Biol. 1999 Nov 15;215(2):314-31.

PMID: 10545240 [PubMed - indexed for MEDLINE]

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