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Items 1 - 20 of 172
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1:

Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application.

Li C, Hung Wong W.

Genome Biol. 2001;2(8):RESEARCH0032. Epub 2001 Aug 3.

PMID: 11532216 [PubMed - indexed for MEDLINE]

2:

Theoretical and experimental comparisons of gene expression indexes for oligonucleotide arrays.

Lemon WJ, Palatini JJ, Krahe R, Wright FA.

Bioinformatics. 2002 Nov;18(11):1470-6.

PMID: 12424118 [PubMed - indexed for MEDLINE]

3:

Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model.

Sásik R, Calvo E, Corbeil J.

Bioinformatics. 2002 Dec;18(12):1633-40.

PMID: 12490448 [PubMed - indexed for MEDLINE]

4:

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

PMID: 15117752 [PubMed - indexed for MEDLINE]

5:

How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results.

Millenaar FF, Okyere J, May ST, van Zanten M, Voesenek LA, Peeters AJ.

BMC Bioinformatics. 2006 Mar 15;7:137.

PMID: 16539732 [PubMed - indexed for MEDLINE]

6:

Exploration, normalization, and summaries of high density oligonucleotide array probe level data.

Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP.

Biostatistics. 2003 Apr;4(2):249-64.

PMID: 12925520 [PubMed - indexed for MEDLINE]

7:

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection.

Li C, Wong WH.

Proc Natl Acad Sci U S A. 2001 Jan 2;98(1):31-6.

PMID: 11134512 [PubMed - indexed for MEDLINE]

8:

Including probe-level uncertainty in model-based gene expression clustering.

Liu X, Lin KK, Andersen B, Rattray M.

BMC Bioinformatics. 2007 Mar 21;8:98.

PMID: 17376221 [PubMed - indexed for MEDLINE]

9:

Combining gene expression data from different generations of oligonucleotide arrays.

Hwang KB, Kong SW, Greenberg SA, Park PJ.

BMC Bioinformatics. 2004 Oct 25;5:159.

PMID: 15504239 [PubMed - indexed for MEDLINE]

10:

Correlation test to assess low-level processing of high-density oligonucleotide microarray data.

Ploner A, Miller LD, Hall P, Bergh J, Pawitan Y.

BMC Bioinformatics. 2005 Mar 31;6:80.

PMID: 15799785 [PubMed - indexed for MEDLINE]

11:

Empirical validation of the S-Score algorithm in the analysis of gene expression data.

Kennedy RE, Archer KJ, Miles MF.

BMC Bioinformatics. 2006 Mar 17;7:154.

PMID: 16545131 [PubMed - indexed for MEDLINE]

12:

An expression index for Affymetrix GeneChips based on the generalized logarithm.

Zhou L, Rocke DM.

Bioinformatics. 2005 Nov 1;21(21):3983-9. Epub 2005 Sep 13.

PMID: 16159924 [PubMed - indexed for MEDLINE]

14:

Algorithm to model gene expression on Affymetrix chips without the use of MM cells.

Lauren PD.

IEEE Trans Nanobioscience. 2003 Sep;2(3):163-70.

PMID: 15376951 [PubMed - indexed for MEDLINE]

15:

Reproducibility, sources of variability, pooling, and sample size: important considerations for the design of high-density oligonucleotide array experiments.

Han ES, Wu Y, McCarter R, Nelson JF, Richardson A, Hilsenbeck SG.

J Gerontol A Biol Sci Med Sci. 2004 Apr;59(4):306-15.

PMID: 15071073 [PubMed - indexed for MEDLINE]

16:

Comparison of the predictive accuracy of DNA array-based multigene classifiers across cDNA arrays and Affymetrix GeneChips.

Stec J, Wang J, Coombes K, Ayers M, Hoersch S, Gold DL, Ross JS, Hess KR, Tirrell S, Linette G, Hortobagyi GN, Fraser Symmans W, Pusztai L.

J Mol Diagn. 2005 Aug;7(3):357-67.

PMID: 16049308 [PubMed - indexed for MEDLINE]

17:

Bayesian infinite mixture model based clustering of gene expression profiles.

Medvedovic M, Sivaganesan S.

Bioinformatics. 2002 Sep;18(9):1194-206.

PMID: 12217911 [PubMed - indexed for MEDLINE]

18:

A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips.

Liu X, Milo M, Lawrence ND, Rattray M.

Bioinformatics. 2005 Sep 15;21(18):3637-44. Epub 2005 Jul 14.

PMID: 16020470 [PubMed - indexed for MEDLINE]

19:

Gene selection for oligonucleotide array: an approach using PM probe level data.

Chen DT, Lin SH, Soong SJ.

Bioinformatics. 2004 Apr 12;20(6):854-62. Epub 2004 Jan 29.

PMID: 14752002 [PubMed - indexed for MEDLINE]

20:

Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data.

Shedden K, Chen W, Kuick R, Ghosh D, Macdonald J, Cho KR, Giordano TJ, Gruber SB, Fearon ER, Taylor JM, Hanash S.

BMC Bioinformatics. 2005 Feb 10;6:26.

PMID: 15705192 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 172
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