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Items 1 - 20 of 193
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1:

A functional update of the Escherichia coli K-12 genome.

Serres MH, Gopal S, Nahum LA, Liang P, Gaasterland T, Riley M.

Genome Biol. 2001;2(9):RESEARCH0035. Epub 2001 Aug 20.

PMID: 11574054 [PubMed - indexed for MEDLINE]

2:

Gene fusions and gene duplications: relevance to genomic annotation and functional analysis.

Serres MH, Riley M.

BMC Genomics. 2005 Mar 9;6(1):33.

PMID: 15757509 [PubMed - indexed for MEDLINE]

4:

Genomic peculiarity of coding sequences and metabolic potential of probiotic Escherichia coli strain Nissle 1917 inferred from raw genome data.

Sun J, Gunzer F, Westendorf AM, Buer J, Scharfe M, Jarek M, Gössling F, Blöcker H, Zeng AP.

J Biotechnol. 2005 May 4;117(2):147-61.

PMID: 15823404 [PubMed - indexed for MEDLINE]

5:

MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products.

Serres MH, Riley M.

Microb Comp Genomics. 2000;5(4):205-22.

PMID: 11471834 [PubMed - indexed for MEDLINE]

6:

Widespread protein sequence similarities: origins of Escherichia coli genes.

Labedan B, Riley M.

J Bacteriol. 1995 Mar;177(6):1585-8.

PMID: 7883716 [PubMed - indexed for MEDLINE]

7:

Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli.

Tatusov RL, Mushegian AR, Bork P, Brown NP, Hayes WS, Borodovsky M, Rudd KE, Koonin EV.

Curr Biol. 1996 Mar 1;6(3):279-91.

PMID: 8805245 [PubMed - indexed for MEDLINE]

9:

Functions of the gene products of Escherichia coli.

Riley M.

Microbiol Rev. 1993 Dec;57(4):862-952. Review.

PMID: 7508076 [PubMed - indexed for MEDLINE]

10:

The complete genome sequence of Escherichia coli K-12.

Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y.

Science. 1997 Sep 5;277(5331):1453-74.

PMID: 9278503 [PubMed - indexed for MEDLINE]

11:

Reannotation of Shewanella oneidensis genome.

Daraselia N, Dernovoy D, Tian Y, Borodovsky M, Tatusov R, Tatusova T.

OMICS. 2003 Summer;7(2):171-5.

PMID: 14506846 [PubMed - indexed for MEDLINE]

12:

Sequence similarity analysis of Escherichia coli proteins: functional and evolutionary implications.

Koonin EV, Tatusov RL, Rudd KE.

Proc Natl Acad Sci U S A. 1995 Dec 5;92(25):11921-5.

PMID: 8524875 [PubMed - indexed for MEDLINE]

13:

Colibri: a functional data base for the Escherichia coli genome.

Médigue C, Viari A, Hénaut A, Danchin A.

Microbiol Rev. 1993 Sep;57(3):623-54. Review.

PMID: 8246843 [PubMed - indexed for MEDLINE]

14:

Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli.

Daubin V, Ochman H.

Genome Res. 2004 Jun;14(6):1036-42.

PMID: 15173110 [PubMed - indexed for MEDLINE]

15:

Genome-wide localization of mobile elements: experimental, statistical and biological considerations.

Martinez-Vaz BM, Xie Y, Pan W, Khodursky AB.

BMC Genomics. 2005 Jun 1;6(1):81.

PMID: 15929794 [PubMed - indexed for MEDLINE]

16:

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005.

Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G 3rd, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL.

Nucleic Acids Res. 2006 Jan 5;34(1):1-9. Print 2006.

PMID: 16397293 [PubMed - indexed for MEDLINE]

18:

Detection of genes in Escherichia coli sequences determined by genome projects and prediction of protein production levels, based on multivariate diversity in codon usage.

Kanaya S, Kudo Y, Nakamura Y, Ikemura T.

Comput Appl Biosci. 1996 Jun;12(3):213-25.

PMID: 8872390 [PubMed - indexed for MEDLINE]

19:

Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12.

Thieffry D, Salgado H, Huerta AM, Collado-Vides J.

Bioinformatics. 1998 Jun;14(5):391-400.

PMID: 9682052 [PubMed - indexed for MEDLINE]

20:

Structural domains, protein modules, and sequence similarities enrich our understanding of the Shewanella oneidensis MR-1 proteome.

Serres MH, Riley M.

OMICS. 2004 Winter;8(4):306-21.

PMID: 15703478 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 193
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