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Items 1 - 20 of 138
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1:

Evaluation of normalization procedures for oligonucleotide array data based on spiked cRNA controls.

Hill AA, Brown EL, Whitley MZ, Tucker-Kellogg G, Hunter CP, Slonim DK.

Genome Biol. 2001;2(12):RESEARCH0055. Epub 2001 Nov 21.

PMID: 11790258 [PubMed - indexed for MEDLINE]

2:

Contrast normalization of oligonucleotide arrays.

Astrand M.

J Comput Biol. 2003;10(1):95-102.

PMID: 12676053 [PubMed - indexed for MEDLINE]

3:

Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model.

Sásik R, Calvo E, Corbeil J.

Bioinformatics. 2002 Dec;18(12):1633-40.

PMID: 12490448 [PubMed - indexed for MEDLINE]

4:

Normalization of single-channel DNA array data by principal component analysis.

Stoyanova R, Querec TD, Brown TR, Patriotis C.

Bioinformatics. 2004 Jul 22;20(11):1772-84. Epub 2004 Mar 22.

PMID: 15037508 [PubMed - indexed for MEDLINE]

5:

Normalization of low-density microarray using external spike-in controls: analysis of macrophage cell lines expression profile.

Fardin P, Moretti S, Biasotti B, Ricciardi A, Bonassi S, Varesio L.

BMC Genomics. 2007 Jan 17;8:17.

PMID: 17229315 [PubMed - indexed for MEDLINE]

6:

Evaluation of methods for oligonucleotide array data via quantitative real-time PCR.

Qin LX, Beyer RP, Hudson FN, Linford NJ, Morris DE, Kerr KF.

BMC Bioinformatics. 2006 Jan 17;7:23.

PMID: 16417622 [PubMed - indexed for MEDLINE]

7:

Using generalized procrustes analysis (GPA) for normalization of cDNA microarray data.

Xiong H, Zhang D, Martyniuk CJ, Trudeau VL, Xia X.

BMC Bioinformatics. 2008 Jan 16;9:25.

PMID: 18199333 [PubMed - indexed for MEDLINE]

8:

Orthogonal projections to latent structures as a strategy for microarray data normalization.

Bylesjö M, Eriksson D, Sjödin A, Jansson S, Moritz T, Trygg J.

BMC Bioinformatics. 2007 Jun 18;8:207.

PMID: 17577396 [PubMed - indexed for MEDLINE]

9:

Normalization and experimental design for ChIP-chip data.

Peng S, Alekseyenko AA, Larschan E, Kuroda MI, Park PJ.

BMC Bioinformatics. 2007 Jun 25;8:219.

PMID: 17592629 [PubMed - indexed for MEDLINE]

10:

A new non-linear normalization method for reducing variability in DNA microarray experiments.

Workman C, Jensen LJ, Jarmer H, Berka R, Gautier L, Nielser HB, Saxild HH, Nielsen C, Brunak S, Knudsen S.

Genome Biol. 2002 Aug 30;3(9):research0048. Epub 2002 Aug 30.

PMID: 12225587 [PubMed - indexed for MEDLINE]

11:

Novel design and controls for focused DNA microarrays: applications in quality assurance/control and normalization for the Health Canada ToxArray.

Yauk CL, Williams A, Boucher S, Berndt LM, Zhou G, Zheng JL, Rowan-Carroll A, Dong H, Lambert IB, Douglas GR, Parfett CL.

BMC Genomics. 2006 Oct 19;7:266.

PMID: 17052352 [PubMed - indexed for MEDLINE]

12:

Ranking: a closer look on globalisation methods for normalisation of gene expression arrays.

Kroll TC, Wölfl S.

Nucleic Acids Res. 2002 Jun 1;30(11):e50.

PMID: 12034851 [PubMed - indexed for MEDLINE]

13:

A high-performance, small-scale microarray for expression profiling of many samples in Arabidopsis-pathogen studies.

Sato M, Mitra RM, Coller J, Wang D, Spivey NW, Dewdney J, Denoux C, Glazebrook J, Katagiri F.

Plant J. 2007 Feb;49(3):565-77. Epub 2006 Dec 20.

PMID: 17181774 [PubMed - indexed for MEDLINE]

14:

An adaptive method for cDNA microarray normalization.

Zhao Y, Li MC, Simon R.

BMC Bioinformatics. 2005 Feb 11;6:28.

PMID: 15707486 [PubMed - indexed for MEDLINE]

15:

Pre-processing Agilent microarray data.

Zahurak M, Parmigiani G, Yu W, Scharpf RB, Berman D, Schaeffer E, Shabbeer S, Cope L.

BMC Bioinformatics. 2007 May 1;8:142.

PMID: 17472750 [PubMed - indexed for MEDLINE]

16:

Microarray and EST database estimates of mRNA expression levels differ: the protein length versus expression curve for C. elegans.

Munoz ET, Bogarad LD, Deem MW.

BMC Genomics. 2004 May 10;5(1):30.

PMID: 15134588 [PubMed - indexed for MEDLINE]

17:

Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application.

Li C, Hung Wong W.

Genome Biol. 2001;2(8):RESEARCH0032. Epub 2001 Aug 3.

PMID: 11532216 [PubMed - indexed for MEDLINE]

18:

[Technology and application of DNA array]

Hashimoto Y.

Rinsho Byori. 2000 Oct;48(10):948-54. Japanese.

PMID: 11215109 [PubMed - indexed for MEDLINE]

19:

Effect of various normalization methods on Applied Biosystems expression array system data.

Barbacioru CC, Wang Y, Canales RD, Sun YA, Keys DN, Chan F, Poulter KA, Samaha RR.

BMC Bioinformatics. 2006 Dec 15;7:533.

PMID: 17173684 [PubMed - indexed for MEDLINE]

20:

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR.

BMC Genomics. 2006 Mar 21;7:59.

PMID: 16551369 [PubMed - indexed for MEDLINE]

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