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Items 1 - 20 of 113
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1:

Tools and resources for identifying protein families, domains and motifs.

Mulder NJ, Apweiler R.

Genome Biol. 2002;3(1):REVIEWS2001. Epub 2001 Dec 19. Review.

PMID: 11806833 [PubMed - indexed for MEDLINE]

2:

Identifying property based sequence motifs in protein families and superfamilies: application to DNase-1 related endonucleases.

Mathura VS, Schein CH, Braun W.

Bioinformatics. 2003 Jul 22;19(11):1381-90.

PMID: 12874050 [PubMed - indexed for MEDLINE]

3:

MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

BMC Bioinformatics. 2006 Oct 17;7:459.

PMID: 17044936 [PubMed - indexed for MEDLINE]

4:

In silico characterization of proteins: UniProt, InterPro and Integr8.

Mulder NJ, Kersey P, Pruess M, Apweiler R.

Mol Biotechnol. 2008 Feb;38(2):165-77. Epub 2007 Oct 4. Review.

PMID: 18219596 [PubMed - indexed for MEDLINE]

5:

MEME: discovering and analyzing DNA and protein sequence motifs.

Bailey TL, Williams N, Misleh C, Li WW.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W369-73.

PMID: 16845028 [PubMed - indexed for MEDLINE]

6:

Computational prediction of protein-protein interactions.

Obenauer JC, Yaffe MB.

Methods Mol Biol. 2004;261:445-68. Review.

PMID: 15064475 [PubMed - indexed for MEDLINE]

7:

Probabilistic alignment of motifs with sequences.

Gonnet P, Lisacek F.

Bioinformatics. 2002 Aug;18(8):1091-101.

PMID: 12176832 [PubMed - indexed for MEDLINE]

8:

BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.

Thompson JD, Koehl P, Ripp R, Poch O.

Proteins. 2005 Oct 1;61(1):127-36.

PMID: 16044462 [PubMed - indexed for MEDLINE]

9:

Minimotif Miner: a tool for investigating protein function.

Balla S, Thapar V, Verma S, Luong T, Faghri T, Huang CH, Rajasekaran S, del Campo JJ, Shinn JH, Mohler WA, Maciejewski MW, Gryk MR, Piccirillo B, Schiller SR, Schiller MR.

Nat Methods. 2006 Mar;3(3):175-7.

PMID: 16489333 [PubMed - indexed for MEDLINE]

10:

Protein consensus sequence motifs.

Aitken A.

Mol Biotechnol. 1999 Oct;12(3):241-53. Review.

PMID: 10631681 [PubMed - indexed for MEDLINE]

11:

The role of pattern databases in sequence analysis.

Attwood TK.

Brief Bioinform. 2000 Feb;1(1):45-59.

PMID: 11466973 [PubMed - indexed for MEDLINE]

12:

3MOTIF: visualizing conserved protein sequence motifs in the protein structure database.

Bennett SP, Nevill-Manning CG, Brutlag DL.

Bioinformatics. 2003 Mar 1;19(4):541-2.

PMID: 12611811 [PubMed - indexed for MEDLINE]

14:

MyHits: a new interactive resource for protein annotation and domain identification.

Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Falquet L.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W332-5.

PMID: 15215405 [PubMed - indexed for MEDLINE]

15:

EVEREST: automatic identification and classification of protein domains in all protein sequences.

Portugaly E, Harel A, Linial N, Linial M.

BMC Bioinformatics. 2006 Jun 2;7:277.

PMID: 16749920 [PubMed - indexed for MEDLINE]

16:

Tree Gibbs Sampler: identifying conserved motifs without aligning orthologous sequences.

Cai X, Hu H, Li XS.

Bioinformatics. 2007 Aug 1;23(15):2013-4. Epub 2007 May 31.

PMID: 17540681 [PubMed - indexed for MEDLINE]

17:

FASSM: enhanced function association in whole genome analysis using sequence and structural motifs.

Gaurav K, Gupta N, Sowdhamini R.

In Silico Biol. 2005;5(5-6):425-38.

PMID: 16268788 [PubMed - indexed for MEDLINE]

18:

Computational identification of novel chitinase-like proteins in the Drosophila melanogaster genome.

Zhu Q, Deng Y, Vanka P, Brown SJ, Muthukrishnan S, Kramer KJ.

Bioinformatics. 2004 Jan 22;20(2):161-9.

PMID: 14734306 [PubMed - indexed for MEDLINE]

19:

3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs.

Bennett SP, Lu L, Brutlag DL.

Nucleic Acids Res. 2003 Jul 1;31(13):3328-32.

PMID: 12824319 [PubMed - indexed for MEDLINE]

20:

SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs.

Chakrabarti S, Anand AP, Bhardwaj N, Pugalenthi G, Sowdhamini R.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W274-6.

PMID: 15980468 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 113
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