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Items 1 - 20 of 152
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1:

Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions.

Enright AJ, Ouzounis CA.

Genome Biol. 2001;2(9):RESEARCH0034.

PMID: 11820254 [PubMed - indexed for MEDLINE]

2:

The comparative genomics of protein interactions.

Peregrín-Alvarez JM, Ouzounis CA.

Genome Inform. 2007;19:131-41.

PMID: 18546511 [PubMed - indexed for MEDLINE]

3:

Denoising inferred functional association networks obtained by gene fusion analysis.

Kamburov A, Goldovsky L, Freilich S, Kapazoglou A, Kunin V, Enright AJ, Tsaftaris A, Ouzounis CA.

BMC Genomics. 2007 Dec 14;8:460.

PMID: 18081932 [PubMed - indexed for MEDLINE]

4:

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.

Remm M, Storm CE, Sonnhammer EL.

J Mol Biol. 2001 Dec 14;314(5):1041-52.

PMID: 11743721 [PubMed - indexed for MEDLINE]

5:

Evolution of gene fusions: horizontal transfer versus independent events.

Yanai I, Wolf YI, Koonin EV.

Genome Biol. 2002;3(5):research0024. Epub 2002 Apr 26.

PMID: 12049665 [PubMed - indexed for MEDLINE]

7:

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

PMID: 14759257 [PubMed - indexed for MEDLINE]

8:

Protein interaction maps for complete genomes based on gene fusion events.

Enright AJ, Iliopoulos I, Kyrpides NC, Ouzounis CA.

Nature. 1999 Nov 4;402(6757):86-90.

PMID: 10573422 [PubMed - indexed for MEDLINE]

9:

Fusion and fission of genes define a metric between fungal genomes.

Durrens P, Nikolski M, Sherman D.

PLoS Comput Biol. 2008 Oct;4(10):e1000200. Epub 2008 Oct 24.

PMID: 18949021 [PubMed - indexed for MEDLINE]

10:

An improved method for identifying functionally linked proteins using phylogenetic profiles.

Cokus S, Mizutani S, Pellegrini M.

BMC Bioinformatics. 2007 May 22;8 Suppl 4:S7.

PMID: 17570150 [PubMed - indexed for MEDLINE]

11:

Molecular phylogeny of the kelch-repeat superfamily reveals an expansion of BTB/kelch proteins in animals.

Prag S, Adams JC.

BMC Bioinformatics. 2003 Sep 17;4:42. Epub 2003 Sep 17.

PMID: 13678422 [PubMed - indexed for MEDLINE]

12:

Interkingdom gene fusions.

Wolf YI, Kondrashov AS, Koonin EV.

Genome Biol. 2000;1(6):RESEARCH0013. Epub 2000 Dec 4.

PMID: 11178267 [PubMed - indexed for MEDLINE]

13:

Using the COG database to improve gene recognition in complete genomes.

Natale DA, Galperin MY, Tatusov RL, Koonin EV.

Genetica. 2000;108(1):9-17.

PMID: 11145426 [PubMed - indexed for MEDLINE]

14:

Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping.

Fujibuchi W, Ogata H, Matsuda H, Kanehisa M.

Nucleic Acids Res. 2000 Oct 15;28(20):4029-36.

PMID: 11024184 [PubMed - indexed for MEDLINE]

15:

Comparative assessment of performance and genome dependence among phylogenetic profiling methods.

Snitkin ES, Gustafson AM, Mellor J, Wu J, DeLisi C.

BMC Bioinformatics. 2006 Sep 27;7:420.

PMID: 17005048 [PubMed - indexed for MEDLINE]

16:

Mapping Functional Associations in the Entire Genome of Drosophila melanogaster Using Fusion Analysis.

Iliopoulos I, Enright AJ, Poullet P, Ouzounis CA.

Comp Funct Genomics. 2003;4(3):337-41.

PMID: 18629289 [PubMed - in process]

17:

Relative rates of gene fusion and fission in multi-domain proteins.

Kummerfeld SK, Teichmann SA.

Trends Genet. 2005 Jan;21(1):25-30.

PMID: 15680510 [PubMed - indexed for MEDLINE]

18:

FusionDB: a database for in-depth analysis of prokaryotic gene fusion events.

Suhre K, Claverie JM.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D273-6.

PMID: 14681411 [PubMed - indexed for MEDLINE]

19:

Comprehensive analysis of gene expression patterns of hedgehog-related genes.

Hao L, Johnsen R, Lauter G, Baillie D, Bürglin TR.

BMC Genomics. 2006 Oct 31;7:280.

PMID: 17076889 [PubMed - indexed for MEDLINE]

20:

The extracellular leucine-rich repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns.

Dolan J, Walshe K, Alsbury S, Hokamp K, O'Keeffe S, Okafuji T, Miller SF, Tear G, Mitchell KJ.

BMC Genomics. 2007 Sep 14;8:320.

PMID: 17868438 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 152
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