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Items 1 - 20 of 108
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1:

Rosetta Stone proteins: "chance and necessity"?

Veitia RA.

Genome Biol. 2002;3(2):INTERACTIONS1001. Epub 2002 Jan 8. Review. No abstract available.

PMID: 11864366 [PubMed - indexed for MEDLINE]

2:

Novel approaches to map protein interactions.

Figeys D.

Curr Opin Biotechnol. 2003 Feb;14(1):119-25. Review.

PMID: 12566011 [PubMed - indexed for MEDLINE]

3:

Large-scale co-evolution analysis of protein structural interlogues using the global protein structural interactome map (PSIMAP).

Kim WK, Bolser DM, Park JH.

Bioinformatics. 2004 May 1;20(7):1138-50. Epub 2004 Feb 5.

PMID: 14764552 [PubMed - indexed for MEDLINE]

4:

BIOVERSE: enhancements to the framework for structural, functional and contextual modeling of proteins and proteomes.

McDermott J, Guerquin M, Frazier Z, Chang AN, Samudrala R.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W324-5.

PMID: 15980482 [PubMed - indexed for MEDLINE]

5:

The relationship between domain duplication and recombination.

Vogel C, Teichmann SA, Pereira-Leal J.

J Mol Biol. 2005 Feb 11;346(1):355-65. Epub 2004 Dec 23.

PMID: 15663950 [PubMed - indexed for MEDLINE]

6:

[Prediction of protein interaction networks based on genome information]

Kawashima S, Kanehisa M.

Tanpakushitsu Kakusan Koso. 2001 Dec;46(16 Suppl):2521-5. Review. Japanese. No abstract available.

PMID: 11802423 [PubMed - indexed for MEDLINE]

7:

The genesis and evolution of homeobox gene clusters.

Garcia-Fernàndez J.

Nat Rev Genet. 2005 Dec;6(12):881-92. Review.

PMID: 16341069 [PubMed - indexed for MEDLINE]

8:

Detection of peptides, proteins, and drugs that selectively interact with protein targets.

Serebriiskii IG, Mitina O, Pugacheva EN, Benevolenskaya E, Kotova E, Toby GG, Khazak V, Kaelin WG, Chernoff J, Golemis EA.

Genome Res. 2002 Nov;12(11):1785-91.

PMID: 12421766 [PubMed - indexed for MEDLINE]

9:

Innovation from reduction: gene loss, domain loss and sequence divergence in genome evolution.

Braun EL.

Appl Bioinformatics. 2003;2(1):13-34. Review.

PMID: 15130831 [PubMed - indexed for MEDLINE]

10:

Protein modules and protein-protein interaction. Introduction.

Janin J, Wodak SJ.

Adv Protein Chem. 2002;61:1-8. Review. No abstract available.

PMID: 12461819 [PubMed - indexed for MEDLINE]

11:

Analysis of shuffled gene libraries.

Joern JM, Meinhold P, Arnold FH.

J Mol Biol. 2002 Feb 22;316(3):643-56.

PMID: 11866523 [PubMed - indexed for MEDLINE]

12:

Evolving protein interaction networks through gene duplication.

Pastor-Satorras R, Smith E, Solé RV.

J Theor Biol. 2003 May 21;222(2):199-210.

PMID: 12727455 [PubMed - indexed for MEDLINE]

13:

Principles of protein-protein interactions.

Teichmann SA.

Bioinformatics. 2002;18 Suppl 2:S249.

PMID: 12386009 [PubMed - indexed for MEDLINE]

14:

Human protein reference database--2006 update.

Mishra GR, Suresh M, Kumaran K, Kannabiran N, Suresh S, Bala P, Shivakumar K, Anuradha N, Reddy R, Raghavan TM, Menon S, Hanumanthu G, Gupta M, Upendran S, Gupta S, Mahesh M, Jacob B, Mathew P, Chatterjee P, Arun KS, Sharma S, Chandrika KN, Deshpande N, Palvankar K, Raghavnath R, Krishnakanth R, Karathia H, Rekha B, Nayak R, Vishnupriya G, Kumar HG, Nagini M, Kumar GS, Jose R, Deepthi P, Mohan SS, Gandhi TK, Harsha HC, Deshpande KS, Sarker M, Prasad TS, Pandey A.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D411-4.

PMID: 16381900 [PubMed - indexed for MEDLINE]

15:

Is optimal gene order impossible?

Poyatos JF, Hurst LD.

Trends Genet. 2006 Aug;22(8):420-3. Epub 2006 Jun 27.

PMID: 16806566 [PubMed - indexed for MEDLINE]

16:

The structure of the protein universe and genome evolution.

Koonin EV, Wolf YI, Karev GP.

Nature. 2002 Nov 14;420(6912):218-23. Review.

PMID: 12432406 [PubMed - indexed for MEDLINE]

17:

Initial sequencing and comparative analysis of the mouse genome.

Mouse Genome Sequencing Consortium, Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, Barlow K, Beck S, Berry E, Birren B, Bloom T, Bork P, Botcherby M, Bray N, Brent MR, Brown DG, Brown SD, Bult C, Burton J, Butler J, Campbell RD, Carninci P, Cawley S, Chiaromonte F, Chinwalla AT, Church DM, Clamp M, Clee C, Collins FS, Cook LL, Copley RR, Coulson A, Couronne O, Cuff J, Curwen V, Cutts T, Daly M, David R, Davies J, Delehaunty KD, Deri J, Dermitzakis ET, Dewey C, Dickens NJ, Diekhans M, Dodge S, Dubchak I, Dunn DM, Eddy SR, Elnitski L, Emes RD, Eswara P, Eyras E, Felsenfeld A, Fewell GA, Flicek P, Foley K, Frankel WN, Fulton LA, Fulton RS, Furey TS, Gage D, Gibbs RA, Glusman G, Gnerre S, Goldman N, Goodstadt L, Grafham D, Graves TA, Green ED, Gregory S, Guigó R, Guyer M, Hardison RC, Haussler D, Hayashizaki Y, Hillier LW, Hinrichs A, Hlavina W, Holzer T, Hsu F, Hua A, Hubbard T, Hunt A, Jackson I, Jaffe DB, Johnson LS, Jones M, Jones TA, Joy A, Kamal M, Karlsson EK, Karolchik D, Kasprzyk A, Kawai J, Keibler E, Kells C, Kent WJ, Kirby A, Kolbe DL, Korf I, Kucherlapati RS, Kulbokas EJ, Kulp D, Landers T, Leger JP, Leonard S, Letunic I, Levine R, Li J, Li M, Lloyd C, Lucas S, Ma B, Maglott DR, Mardis ER, Matthews L, Mauceli E, Mayer JH, McCarthy M, McCombie WR, McLaren S, McLay K, McPherson JD, Meldrim J, Meredith B, Mesirov JP, Miller W, Miner TL, Mongin E, Montgomery KT, Morgan M, Mott R, Mullikin JC, Muzny DM, Nash WE, Nelson JO, Nhan MN, Nicol R, Ning Z, Nusbaum C, O'Connor MJ, Okazaki Y, Oliver K, Overton-Larty E, Pachter L, Parra G, Pepin KH, Peterson J, Pevzner P, Plumb R, Pohl CS, Poliakov A, Ponce TC, Ponting CP, Potter S, Quail M, Reymond A, Roe BA, Roskin KM, Rubin EM, Rust AG, Santos R, Sapojnikov V, Schultz B, Schultz J, Schwartz MS, Schwartz S, Scott C, Seaman S, Searle S, Sharpe T, Sheridan A, Shownkeen R, Sims S, Singer JB, Slater G, Smit A, Smith DR, Spencer B, Stabenau A, Stange-Thomann N, Sugnet C, Suyama M, Tesler G, Thompson J, Torrents D, Trevaskis E, Tromp J, Ucla C, Ureta-Vidal A, Vinson JP, Von Niederhausern AC, Wade CM, Wall M, Weber RJ, Weiss RB, Wendl MC, West AP, Wetterstrand K, Wheeler R, Whelan S, Wierzbowski J, Willey D, Williams S, Wilson RK, Winter E, Worley KC, Wyman D, Yang S, Yang SP, Zdobnov EM, Zody MC, Lander ES.

Nature. 2002 Dec 5;420(6915):520-62.

PMID: 12466850 [PubMed - indexed for MEDLINE]

18:

The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms.

Akhunov ED, Goodyear AW, Geng S, Qi LL, Echalier B, Gill BS, Miftahudin, Gustafson JP, Lazo G, Chao S, Anderson OD, Linkiewicz AM, Dubcovsky J, La Rota M, Sorrells ME, Zhang D, Nguyen HT, Kalavacharla V, Hossain K, Kianian SF, Peng J, Lapitan NL, Gonzalez-Hernandez JL, Anderson JA, Choi DW, Close TJ, Dilbirligi M, Gill KS, Walker-Simmons MK, Steber C, McGuire PE, Qualset CO, Dvorak J.

Genome Res. 2003 May;13(5):753-63. Epub 2003 Apr 14.

PMID: 12695326 [PubMed - indexed for MEDLINE]

19:

Comparative analysis of protein domain organization.

Ye Y, Godzik A.

Genome Res. 2004 Mar;14(3):343-53.

PMID: 14993202 [PubMed - indexed for MEDLINE]

20:

Identification of functional modules from conserved ancestral protein-protein interactions.

Dutkowski J, Tiuryn J.

Bioinformatics. 2007 Jul 1;23(13):i149-58.

PMID: 17646291 [PubMed - indexed for MEDLINE]

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